organic compounds
Ethyl 7-oxo-7H-benzo[de]imidazo[5,1-a]isoquinoline-11-carboxylate–trifluoroacetic acid (1/1)
aDepartment of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, New Jersey 08854, USA
*Correspondence e-mail: dzsquared@aol.com
The structure of the title trifluoroacetic acid adduct, C17H12N2O3·C2HF3O2, contains a trifluoroacetic acid molecule hydrogen bonded to the imine N atom of the imidazole ring of a nearly planar four-fused-ring system (r.m.s. deviatiation = 0.013 Å). The carboxylic acid group of the triflouroacetic acid molecule is twisted with respect to the mean plane of the four-fused-ring sytem by 75.9 (2)°. A short intramolecular C—H⋯O hydrogen bond occurs. In the crystal, the adduct molecules are arranged into stacks along the b axis via π–π interactions between imidazole rings and between imidazole and one of the benzene rings [centroid–centroid distances 3.352 (2) and 3.485 (2) Å, respectively]. Molecules are linked via C—H⋯O hydrogen bonds, forming an alternating polymeric head-to-head/tail-to-tail stepped chain approximately along the a-axis direction and tilted on an axis bisecting the b and c axes.
Related literature
For 19F NMR studies of related compounds, see: Stibrany (2003). For polymerization studies, see: Stibrany et al. (2003). For their use as agents to study see: Knapp et al. (1990). For related structures, see: Baugh et al. (2006); Stibrany (2003); Stibrany et al. (2002, 2004); Stibrany & Potenza (2008, 2009); Gorun et al. (1996).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996) and ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S1600536813013834/gk2567sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813013834/gk2567Isup2.hkl
The title compound was isolated as a minor side product in the condensation of acenaphthaquinone in place of phenanthroquinone (Stibrany & Potenza, 2009). A small yellow–orange band was isolated by
on silica gel using ethyl acetate as the Two X-ray quality crystals were obtained by slow evaporation of a 10:1 v/v methanol/trifluoroacetic acid solution of the title compound.Hydrogen atoms were positioned geometrically and refined using a riding model, with C—H = 0.97 (methylene), 0.96 (methyl) and 0.93 Å (aromatic), and with Uiso(H) = 1.2–1.5Ueq (C). The carboxylic hydrogen atom was freely refined.
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996) and ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound showing the atom-numbering scheme. Displacement ellipsoids are shown at the 40% probability level. H atoms are shown as spheres of arbitrary radius. | |
Fig. 2. Packing of the π-π stacked imidazole dimers approximately along the b axis in the unit cell viewed approximately down the a axis. |
C17H12N2O3·C2HF3O2 | Z = 2 |
Mr = 406.31 | F(000) = 416 |
Triclinic, P1 | Dx = 1.583 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.642 (3) Å | Cell parameters from 800 reflections |
b = 8.111 (4) Å | θ = 2.5–26.0° |
c = 14.043 (6) Å | µ = 0.14 mm−1 |
α = 97.539 (8)° | T = 100 K |
β = 98.055 (8)° | Spike, yellow |
γ = 92.695 (8)° | 0.48 × 0.10 × 0.07 mm |
V = 852.6 (6) Å3 |
Bruker SMART CCD area-detector diffractometer | 3380 independent reflections |
Radiation source: fine-focus sealed tube | 2642 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
ϕ and ω scans | θmax = 26.2°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2000; Blessing, 1995) | h = −9→9 |
Tmin = 0.711, Tmax = 1.00 | k = −10→10 |
7689 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.140 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0934P)2 + 0.124P] where P = (Fo2 + 2Fc2)/3 |
3380 reflections | (Δ/σ)max < 0.001 |
267 parameters | Δρmax = 0.42 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
C17H12N2O3·C2HF3O2 | γ = 92.695 (8)° |
Mr = 406.31 | V = 852.6 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.642 (3) Å | Mo Kα radiation |
b = 8.111 (4) Å | µ = 0.14 mm−1 |
c = 14.043 (6) Å | T = 100 K |
α = 97.539 (8)° | 0.48 × 0.10 × 0.07 mm |
β = 98.055 (8)° |
Bruker SMART CCD area-detector diffractometer | 3380 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000; Blessing, 1995) | 2642 reflections with I > 2σ(I) |
Tmin = 0.711, Tmax = 1.00 | Rint = 0.032 |
7689 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.140 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.42 e Å−3 |
3380 reflections | Δρmin = −0.28 e Å−3 |
267 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F1 | 0.25760 (19) | 0.12397 (17) | 0.05463 (9) | 0.0435 (4) | |
F2 | 0.0782 (2) | 0.27375 (17) | −0.01973 (9) | 0.0460 (4) | |
F3 | −0.0070 (2) | 0.13711 (19) | 0.08785 (10) | 0.0550 (5) | |
O1 | 0.1872 (2) | 0.51438 (18) | 0.12697 (11) | 0.0390 (4) | |
O2 | 0.2409 (2) | 0.32127 (17) | 0.22686 (10) | 0.0300 (4) | |
O11 | 0.79755 (19) | 0.70261 (18) | 0.38002 (10) | 0.0310 (4) | |
O12 | 0.60779 (18) | 0.52898 (16) | 0.27167 (9) | 0.0242 (3) | |
O30 | 0.08434 (17) | 0.69206 (16) | 0.60128 (9) | 0.0250 (3) | |
N11 | 0.3148 (2) | 0.69116 (18) | 0.51474 (11) | 0.0185 (3) | |
N13 | 0.3464 (2) | 0.54546 (18) | 0.37627 (11) | 0.0201 (4) | |
C1 | 0.1900 (3) | 0.3743 (2) | 0.14513 (13) | 0.0242 (4) | |
C2 | 0.1289 (3) | 0.2258 (3) | 0.06570 (14) | 0.0276 (5) | |
C11 | 0.4856 (2) | 0.7380 (2) | 0.49858 (13) | 0.0183 (4) | |
C12 | 0.5023 (2) | 0.6433 (2) | 0.41081 (12) | 0.0189 (4) | |
C13 | 0.2372 (2) | 0.5763 (2) | 0.43870 (12) | 0.0199 (4) | |
H13 | 0.1230 | 0.5272 | 0.4325 | 0.024* | |
C20 | 0.5334 (3) | 1.1120 (2) | 0.80732 (13) | 0.0260 (5) | |
H20 | 0.5971 | 1.1923 | 0.8543 | 0.031* | |
C21 | 0.5911 (2) | 0.8628 (2) | 0.57107 (12) | 0.0185 (4) | |
C22 | 0.7608 (2) | 0.9217 (2) | 0.56293 (13) | 0.0217 (4) | |
H22 | 0.8127 | 0.8794 | 0.5096 | 0.026* | |
C23 | 0.8557 (3) | 1.0438 (2) | 0.63361 (14) | 0.0248 (4) | |
H23 | 0.9689 | 1.0822 | 0.6262 | 0.030* | |
C24 | 0.7837 (3) | 1.1071 (2) | 0.71340 (14) | 0.0247 (4) | |
H24 | 0.8483 | 1.1877 | 0.7599 | 0.030* | |
C25 | 0.6110 (3) | 1.0504 (2) | 0.72550 (13) | 0.0224 (4) | |
C26 | 0.5131 (2) | 0.9275 (2) | 0.65349 (13) | 0.0193 (4) | |
C27 | 0.3396 (3) | 0.8738 (2) | 0.66789 (13) | 0.0205 (4) | |
C28 | 0.2685 (3) | 0.9367 (2) | 0.74925 (13) | 0.0241 (4) | |
H28 | 0.1553 | 0.8993 | 0.7573 | 0.029* | |
C29 | 0.3665 (3) | 1.0565 (2) | 0.81947 (14) | 0.0281 (5) | |
H29 | 0.3188 | 1.0986 | 0.8744 | 0.034* | |
C30 | 0.2317 (2) | 0.7487 (2) | 0.59630 (13) | 0.0191 (4) | |
C41 | 0.6521 (2) | 0.6321 (2) | 0.35499 (13) | 0.0206 (4) | |
C42 | 0.7451 (3) | 0.5121 (3) | 0.20891 (14) | 0.0274 (5) | |
H42A | 0.8381 | 0.4469 | 0.2358 | 0.033* | |
H42B | 0.7970 | 0.6210 | 0.2027 | 0.033* | |
C43 | 0.6566 (3) | 0.4257 (3) | 0.11143 (14) | 0.0346 (5) | |
H43A | 0.6112 | 0.3161 | 0.1181 | 0.052* | |
H43B | 0.7413 | 0.4172 | 0.0668 | 0.052* | |
H43C | 0.5610 | 0.4886 | 0.0872 | 0.052* | |
H2O | 0.284 (4) | 0.419 (4) | 0.281 (2) | 0.061 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.0536 (9) | 0.0426 (8) | 0.0288 (7) | 0.0170 (6) | −0.0016 (6) | −0.0117 (6) |
F2 | 0.0704 (10) | 0.0429 (8) | 0.0192 (6) | 0.0082 (7) | −0.0094 (6) | −0.0009 (5) |
F3 | 0.0627 (10) | 0.0589 (9) | 0.0352 (8) | −0.0337 (8) | 0.0193 (7) | −0.0232 (7) |
O1 | 0.0595 (11) | 0.0267 (8) | 0.0269 (8) | 0.0030 (7) | −0.0062 (7) | 0.0029 (6) |
O2 | 0.0476 (9) | 0.0231 (7) | 0.0164 (7) | −0.0031 (6) | −0.0007 (6) | −0.0004 (6) |
O11 | 0.0297 (8) | 0.0378 (8) | 0.0236 (7) | −0.0072 (6) | 0.0089 (6) | −0.0049 (6) |
O12 | 0.0290 (7) | 0.0273 (7) | 0.0157 (6) | 0.0000 (6) | 0.0065 (5) | −0.0020 (5) |
O30 | 0.0243 (7) | 0.0270 (7) | 0.0231 (7) | −0.0040 (6) | 0.0063 (5) | 0.0000 (5) |
N11 | 0.0216 (8) | 0.0182 (8) | 0.0153 (7) | −0.0011 (6) | 0.0027 (6) | 0.0016 (6) |
N13 | 0.0258 (8) | 0.0189 (8) | 0.0149 (7) | −0.0004 (6) | 0.0013 (6) | 0.0025 (6) |
C1 | 0.0257 (10) | 0.0276 (11) | 0.0189 (9) | 0.0026 (8) | 0.0027 (7) | 0.0021 (8) |
C2 | 0.0310 (11) | 0.0327 (11) | 0.0188 (10) | 0.0023 (9) | 0.0038 (8) | 0.0023 (8) |
C11 | 0.0205 (9) | 0.0189 (9) | 0.0162 (9) | 0.0016 (7) | 0.0023 (7) | 0.0049 (7) |
C12 | 0.0228 (9) | 0.0183 (9) | 0.0149 (8) | 0.0000 (7) | 0.0002 (7) | 0.0027 (7) |
C13 | 0.0229 (9) | 0.0201 (9) | 0.0156 (9) | −0.0016 (7) | 0.0002 (7) | 0.0029 (7) |
C20 | 0.0382 (12) | 0.0202 (10) | 0.0166 (9) | 0.0002 (8) | −0.0010 (8) | −0.0023 (7) |
C21 | 0.0239 (9) | 0.0167 (9) | 0.0140 (8) | 0.0004 (7) | −0.0002 (7) | 0.0027 (7) |
C22 | 0.0254 (10) | 0.0217 (9) | 0.0179 (9) | 0.0017 (7) | 0.0024 (7) | 0.0036 (7) |
C23 | 0.0237 (10) | 0.0239 (10) | 0.0259 (10) | −0.0004 (8) | −0.0004 (8) | 0.0054 (8) |
C24 | 0.0291 (11) | 0.0193 (9) | 0.0225 (10) | −0.0035 (8) | −0.0042 (8) | 0.0009 (7) |
C25 | 0.0306 (10) | 0.0183 (9) | 0.0173 (9) | 0.0024 (8) | −0.0009 (8) | 0.0027 (7) |
C26 | 0.0249 (10) | 0.0167 (9) | 0.0160 (9) | 0.0012 (7) | 0.0010 (7) | 0.0038 (7) |
C27 | 0.0272 (10) | 0.0191 (9) | 0.0156 (9) | 0.0027 (8) | 0.0023 (7) | 0.0041 (7) |
C28 | 0.0291 (11) | 0.0244 (10) | 0.0201 (9) | 0.0025 (8) | 0.0064 (8) | 0.0045 (7) |
C29 | 0.0398 (12) | 0.0272 (11) | 0.0166 (9) | 0.0052 (9) | 0.0053 (8) | −0.0016 (8) |
C30 | 0.0222 (10) | 0.0209 (9) | 0.0153 (8) | 0.0029 (7) | 0.0046 (7) | 0.0039 (7) |
C41 | 0.0277 (10) | 0.0185 (9) | 0.0158 (9) | 0.0001 (8) | 0.0036 (7) | 0.0027 (7) |
C42 | 0.0315 (11) | 0.0321 (11) | 0.0209 (10) | 0.0041 (9) | 0.0109 (8) | 0.0038 (8) |
C43 | 0.0412 (13) | 0.0452 (13) | 0.0183 (10) | 0.0076 (10) | 0.0086 (9) | 0.0013 (9) |
F1—C2 | 1.326 (3) | C20—H20 | 0.9300 |
F2—C2 | 1.322 (2) | C21—C22 | 1.386 (3) |
F3—C2 | 1.332 (2) | C21—C26 | 1.426 (3) |
O1—C1 | 1.197 (2) | C22—C23 | 1.402 (3) |
O2—C1 | 1.294 (2) | C22—H22 | 0.9300 |
O2—H2O | 1.03 (3) | C23—C24 | 1.368 (3) |
O11—C41 | 1.210 (2) | C23—H23 | 0.9300 |
O12—C41 | 1.338 (2) | C24—C25 | 1.418 (3) |
O12—C42 | 1.462 (2) | C24—H24 | 0.9300 |
O30—C30 | 1.211 (2) | C25—C26 | 1.425 (3) |
N11—C13 | 1.368 (2) | C26—C27 | 1.425 (3) |
N11—C11 | 1.399 (2) | C27—C28 | 1.381 (3) |
N11—C30 | 1.423 (2) | C27—C30 | 1.463 (3) |
N13—C13 | 1.302 (3) | C28—C29 | 1.397 (3) |
N13—C12 | 1.390 (2) | C28—H28 | 0.9300 |
C1—C2 | 1.537 (3) | C29—H29 | 0.9300 |
C11—C12 | 1.390 (3) | C42—C43 | 1.506 (3) |
C11—C21 | 1.461 (2) | C42—H42A | 0.9700 |
C12—C41 | 1.475 (3) | C42—H42B | 0.9700 |
C13—H13 | 0.9300 | C43—H43A | 0.9600 |
C20—C29 | 1.373 (3) | C43—H43B | 0.9600 |
C20—C25 | 1.410 (3) | C43—H43C | 0.9600 |
C1—O2—H2O | 111.3 (16) | C23—C24—C25 | 120.26 (17) |
C41—O12—C42 | 115.50 (15) | C23—C24—H24 | 119.9 |
C13—N11—C11 | 108.78 (15) | C25—C24—H24 | 119.9 |
C13—N11—C30 | 124.09 (15) | C20—C25—C24 | 121.70 (17) |
C11—N11—C30 | 127.13 (15) | C20—C25—C26 | 118.99 (18) |
C13—N13—C12 | 107.70 (15) | C24—C25—C26 | 119.30 (18) |
O1—C1—O2 | 129.19 (18) | C25—C26—C27 | 117.75 (17) |
O1—C1—C2 | 120.89 (18) | C25—C26—C21 | 119.44 (17) |
O2—C1—C2 | 109.92 (17) | C27—C26—C21 | 122.81 (16) |
F2—C2—F1 | 107.05 (17) | C28—C27—C26 | 121.52 (17) |
F2—C2—F3 | 107.57 (17) | C28—C27—C30 | 118.02 (18) |
F1—C2—F3 | 107.45 (18) | C26—C27—C30 | 120.46 (17) |
F2—C2—C1 | 112.15 (17) | C27—C28—C29 | 120.05 (19) |
F1—C2—C1 | 111.43 (16) | C27—C28—H28 | 120.0 |
F3—C2—C1 | 110.95 (16) | C29—C28—H28 | 120.0 |
C12—C11—N11 | 103.93 (15) | C20—C29—C28 | 119.86 (19) |
C12—C11—C21 | 138.42 (17) | C20—C29—H29 | 120.1 |
N11—C11—C21 | 117.65 (16) | C28—C29—H29 | 120.1 |
C11—C12—N13 | 109.43 (16) | O30—C30—N11 | 119.32 (16) |
C11—C12—C41 | 130.92 (17) | O30—C30—C27 | 126.38 (17) |
N13—C12—C41 | 119.64 (16) | N11—C30—C27 | 114.30 (16) |
N13—C13—N11 | 110.16 (16) | O11—C41—O12 | 123.27 (17) |
N13—C13—H13 | 124.9 | O11—C41—C12 | 125.94 (17) |
N11—C13—H13 | 124.9 | O12—C41—C12 | 110.78 (16) |
C29—C20—C25 | 121.82 (17) | O12—C42—C43 | 106.77 (16) |
C29—C20—H20 | 119.1 | O12—C42—H42A | 110.4 |
C25—C20—H20 | 119.1 | C43—C42—H42A | 110.4 |
C22—C21—C26 | 119.02 (16) | O12—C42—H42B | 110.4 |
C22—C21—C11 | 123.35 (17) | C43—C42—H42B | 110.4 |
C26—C21—C11 | 117.63 (17) | H42A—C42—H42B | 108.6 |
C21—C22—C23 | 121.24 (18) | C42—C43—H43A | 109.5 |
C21—C22—H22 | 119.4 | C42—C43—H43B | 109.5 |
C23—C22—H22 | 119.4 | H43A—C43—H43B | 109.5 |
C24—C23—C22 | 120.73 (19) | C42—C43—H43C | 109.5 |
C24—C23—H23 | 119.6 | H43A—C43—H43C | 109.5 |
C22—C23—H23 | 119.6 | H43B—C43—H43C | 109.5 |
O1—C1—C2—F2 | 0.6 (3) | C20—C25—C26—C27 | 0.5 (3) |
O2—C1—C2—F2 | −178.97 (17) | C24—C25—C26—C27 | −179.78 (16) |
O1—C1—C2—F1 | 120.6 (2) | C20—C25—C26—C21 | −179.23 (16) |
O2—C1—C2—F1 | −59.0 (2) | C24—C25—C26—C21 | 0.5 (3) |
O1—C1—C2—F3 | −119.7 (2) | C22—C21—C26—C25 | −0.1 (3) |
O2—C1—C2—F3 | 60.7 (2) | C11—C21—C26—C25 | −179.51 (16) |
C13—N11—C11—C12 | −0.7 (2) | C22—C21—C26—C27 | −179.83 (16) |
C30—N11—C11—C12 | 178.48 (16) | C11—C21—C26—C27 | 0.8 (3) |
C13—N11—C11—C21 | 179.02 (15) | C25—C26—C27—C28 | −0.7 (3) |
C30—N11—C11—C21 | −1.8 (3) | C21—C26—C27—C28 | 178.95 (17) |
N11—C11—C12—N13 | 0.52 (19) | C25—C26—C27—C30 | 179.58 (16) |
C21—C11—C12—N13 | −179.2 (2) | C21—C26—C27—C30 | −0.7 (3) |
N11—C11—C12—C41 | −178.54 (17) | C26—C27—C28—C29 | 0.4 (3) |
C21—C11—C12—C41 | 1.8 (4) | C30—C27—C28—C29 | −179.91 (17) |
C13—N13—C12—C11 | −0.1 (2) | C25—C20—C29—C28 | −0.5 (3) |
C13—N13—C12—C41 | 179.07 (16) | C27—C28—C29—C20 | 0.2 (3) |
C12—N13—C13—N11 | −0.4 (2) | C13—N11—C30—O30 | 1.5 (3) |
C11—N11—C13—N13 | 0.7 (2) | C11—N11—C30—O30 | −177.63 (16) |
C30—N11—C13—N13 | −178.53 (15) | C13—N11—C30—C27 | −179.09 (15) |
C12—C11—C21—C22 | 0.7 (3) | C11—N11—C30—C27 | 1.8 (3) |
N11—C11—C21—C22 | −178.98 (16) | C28—C27—C30—O30 | −0.8 (3) |
C12—C11—C21—C26 | 180.0 (2) | C26—C27—C30—O30 | 178.88 (17) |
N11—C11—C21—C26 | 0.4 (2) | C28—C27—C30—N11 | 179.81 (15) |
C26—C21—C22—C23 | −0.5 (3) | C26—C27—C30—N11 | −0.5 (2) |
C11—C21—C22—C23 | 178.86 (16) | C42—O12—C41—O11 | −2.9 (3) |
C21—C22—C23—C24 | 0.7 (3) | C42—O12—C41—C12 | 178.27 (15) |
C22—C23—C24—C25 | −0.3 (3) | C11—C12—C41—O11 | 3.7 (3) |
C29—C20—C25—C24 | −179.62 (18) | N13—C12—C41—O11 | −175.24 (18) |
C29—C20—C25—C26 | 0.1 (3) | C11—C12—C41—O12 | −177.52 (18) |
C23—C24—C25—C20 | 179.44 (17) | N13—C12—C41—O12 | 3.5 (2) |
C23—C24—C25—C26 | −0.3 (3) | C41—O12—C42—C43 | −166.99 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
C22—H22···O11 | 0.93 | 2.15 | 2.981 (3) | 148 |
O2—H2O···N13 | 1.03 (3) | 1.58 (3) | 2.597 (2) | 170 (3) |
C13—H13···O30i | 0.93 | 2.28 | 3.143 (3) | 154 |
C23—H23···O11ii | 0.93 | 2.46 | 3.320 (3) | 155 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+2, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C17H12N2O3·C2HF3O2 |
Mr | 406.31 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 7.642 (3), 8.111 (4), 14.043 (6) |
α, β, γ (°) | 97.539 (8), 98.055 (8), 92.695 (8) |
V (Å3) | 852.6 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.48 × 0.10 × 0.07 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000; Blessing, 1995) |
Tmin, Tmax | 0.711, 1.00 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7689, 3380, 2642 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.620 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.140, 1.00 |
No. of reflections | 3380 |
No. of parameters | 267 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.42, −0.28 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEPIII (Burnett & Johnson, 1996) and ORTEP-3 for Windows (Farrugia, 2012), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C22—H22···O11 | 0.93 | 2.15 | 2.981 (3) | 148 |
O2—H2O···N13 | 1.03 (3) | 1.58 (3) | 2.597 (2) | 170 (3) |
C13—H13···O30i | 0.93 | 2.28 | 3.143 (3) | 154 |
C23—H23···O11ii | 0.93 | 2.46 | 3.320 (3) | 155 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+2, −y+2, −z+1. |
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound, Fig. 1, was isolated as part of our long-term interest in the chemistry of bis (imidazoles), bis(benzimidazoles), and their complexes with metal ions. These species have demonstrated their usefulness as proton sponges (Stibrany et al., 2002), geometrically constraining ligands (Stibrany et al., 2004), agents to study electron transfer (Knapp et al., 1990), polymerization catalysts (Stibrany et al., 2003; Baugh et al., 2006), 19F NMR polymerization catalyst probes (Stibrany, 2003), and in the formation of metal-organic copolymers (Stibrany & Potenza, 2008). Previously, we have shown that 1-methylbenzimidazole can be used in the synthesis of bis(benzimidazole)ketones, which were found to be useful ligands for the chelation of metals (Gorun et al., 1996).
Our investigation into the synthesis of acenapthoimidazoles as building blocks for higher dentate ligands led us to attempt a similar method of preparation as for phenanthroimidazoles (Stibrany & Potenza, 2009). The title compound was isolated by chromatography as a side product of that preparation. The trifluoroacetic acid adduct [C18H12N2O3][C2HF3O2] contains trifluoroacetic acid molecule, hydrogen bonded to the imine nitrogen of the imidazole ring of a nearly-planar, four-fused-ring system (r.m.s. deviatiation = 0.013 Å). A carbonyl-centroid interaction is formed by C41-O11 to the centroid formed by C20, C25/C29 (-x+1, -y, -z+1) with a O11-Cg distance of 3.567 (2) Å and a C41-O11···Cg angle of 78.0 (1)°. In the space group P1 , the adduct molecules are centrosymmetrically disposed about the origin, and form π-π dimers through the imidazole rings along the b cell direction Fig 2. The first Cg-Cg interaction is the imidazole ring (N11, N13, C11/C13) paired to a symmetry related imidazole (-x+1, -y+1, -z+1) at a distance of 3.352 (2) Å. A second Cg-Cg interaction is formed by the imidazole ring and the centroid C21/C26 (-x+1, -y, 1-z) at a distance of 3.485 (2) Å. There are three short intermolecular hydrogen bonds and one short intramolecular hydrogen bond found in the structure and are listed in the hydrogen-bond Table 1. No additional electron density was located near N13 in the difference Fourier maps, likely due to the electron-withdrawing effect of the adjacent ethyl ester group.