organic compounds
3,4-Difluoro-2-hydroxybenzoic acid
aDepartment of Chemistry, U.C.S., Tumkur University, Tumkur, Karnataka 572 103, India, bDepartment of Studies and Research in Physics, U.C.S., Tumkur University, Tumkur, Karnataka 572 103, India, and cDepartment of Chemistry, G.F.G.C., Tumkur, Karnataka, 572 102, India
*Correspondence e-mail: vijaykumargr18@yahoo.co.in
In the title compound, C7H4F2O3, an intramolecular O—H⋯O hydrogen bond is observed. In the crystal, inversion dimers linked by pairs of O—H⋯O hydrogen bonds generate R22(8) ring motifs. These dimers are linked by C—H⋯O and C—H⋯F hydrogen bonds, forming sheets lying parallel to (30-1). The sheets are linked by aromatic π–π stacking interactions [inter-centroid distance = 3.7817 (9) Å], forming a three-dimensional structure.
CCDC reference: 994805
Related literature
For antibody and gene-directed enzyme prodrug therapy, see: Springer et al. (1994); Davies et al. (2005). For the antimicrobial activity of fluorinated benzoic acid derivatives, see: Rajasekhar et al. (2013).
Experimental
Crystal data
|
Data collection: APEX2 (Bruker, 2009); cell APEX2 and SAINT-Plus (Bruker, 2009); data reduction: SAINT-Plus and XPREP (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97.
Supporting information
CCDC reference: 994805
10.1107/S1600536814007211/jj2185sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814007211/jj2185Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814007211/jj2185Isup3.cml
To an ice cooled and stirred solution of 2,3,4-trifluorobenzoic acid (0.028 mmol) in dimethylimidazolidinone (10 ml), solid sodium hydroxide (0.113 mmol) was added in portions, and the mixture was heated to 120°C for 2 h. The reaction was monitored by TLC. After the reaction was completed, the mixture was cooled to room temperature and neutralized (pH 5–6) with 2 N hydrochloric acid (7.5 ml). The title compound was separated out as white solid, filtered, washed with excess of water and dried. Colourless prisms of the title compound were grown in ethanol by slow the evaporation technique.
The hydroxy H-atoms were located in a difference Fourier map, and were refined isotropically with the O–H distance restrained to 0.82±0.01 Å. H atoms were positioned with idealized geometry using a riding model with C—H = 0.93 Å and were refined with isotropic displacement parameters (set to 1.2 times of the Ueq of the parent atom).
Data collection: APEX2 (Bruker, 2009); cell
APEX2 and SAINT-Plus (Bruker, 2009); data reduction: SAINT-Plus and XPREP (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. Molecular structure of the title compound, showing displacement ellipsoids drawn at the 50% probability level. | |
Fig. 2. Molecular packing of the title compound viewed along the b axis. Dashed lines indicate O—H···O intramolecular and pairs of O—H···O intermolecular hydrogen bonds forming R22(8) ring motifs and weak C—H···O and C—H···F intermolecular interactions along [010]. | |
Fig. 3. Molecules displaying weak π-π interactions [centroid-centroid separation = 3.7817 (9) Å]. |
C7H4F2O3 | Prism |
Mr = 174.10 | Dx = 1.699 Mg m−3 |
Monoclinic, P21/n | Melting point: 448 K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 9.4252 (8) Å | Cell parameters from 1045 reflections |
b = 6.8145 (5) Å | θ = 2.3–26.5° |
c = 11.0391 (8) Å | µ = 0.17 mm−1 |
β = 106.257 (5)° | T = 296 K |
V = 680.67 (9) Å3 | Prism, colourless |
Z = 4 | 0.20 × 0.16 × 0.12 mm |
F(000) = 352 |
Bruker APEXII CCD area-detector diffractometer | 1344 independent reflections |
Radiation source: fine-focus sealed tube | 1045 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
Detector resolution: 1.6 pixels mm-1 | θmax = 26.0°, θmin = 2.5° |
phi and ω scans | h = −11→11 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | k = −8→8 |
Tmin = 0.967, Tmax = 0.980 | l = −13→13 |
6362 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.031 | H-atom parameters constrained |
wR(F2) = 0.094 | w = 1/[σ2(Fo2) + (0.0514P)2 + 0.0514P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max < 0.001 |
1344 reflections | Δρmax = 0.19 e Å−3 |
112 parameters | Δρmin = −0.14 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 constraints | Extinction coefficient: 0.018 (3) |
Primary atom site location: structure-invariant direct methods |
C7H4F2O3 | V = 680.67 (9) Å3 |
Mr = 174.10 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.4252 (8) Å | µ = 0.17 mm−1 |
b = 6.8145 (5) Å | T = 296 K |
c = 11.0391 (8) Å | 0.20 × 0.16 × 0.12 mm |
β = 106.257 (5)° |
Bruker APEXII CCD area-detector diffractometer | 1344 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | 1045 reflections with I > 2σ(I) |
Tmin = 0.967, Tmax = 0.980 | Rint = 0.037 |
6362 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 0 restraints |
wR(F2) = 0.094 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.19 e Å−3 |
1344 reflections | Δρmin = −0.14 e Å−3 |
112 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.55955 (13) | 0.54118 (17) | 0.18180 (14) | 0.0376 (3) | |
C2 | 0.60924 (12) | 0.57452 (17) | 0.31759 (13) | 0.0357 (3) | |
C3 | 0.64443 (13) | 0.41737 (18) | 0.40234 (13) | 0.0400 (3) | |
H3 | 0.6343 | 0.2897 | 0.3713 | 0.046 (4)* | |
C4 | 0.69337 (14) | 0.44745 (19) | 0.52991 (15) | 0.0458 (4) | |
H4 | 0.7180 | 0.3420 | 0.5854 | 0.065 (5)* | |
C5 | 0.70534 (14) | 0.63748 (19) | 0.57424 (14) | 0.0443 (3) | |
C6 | 0.67106 (15) | 0.79441 (18) | 0.49292 (15) | 0.0441 (4) | |
C7 | 0.62456 (13) | 0.76688 (16) | 0.36434 (14) | 0.0380 (3) | |
O1 | 0.53519 (11) | 0.67798 (13) | 0.10424 (9) | 0.0482 (3) | |
O2 | 0.54221 (10) | 0.35741 (12) | 0.14643 (10) | 0.0503 (3) | |
H2 | 0.5139 | 0.3516 | 0.0692 | 0.075* | |
O3 | 0.59795 (11) | 0.92951 (13) | 0.29161 (10) | 0.0543 (3) | |
H3A | 0.5708 | 0.8976 | 0.2170 | 0.081* | |
F1 | 0.75075 (11) | 0.67350 (13) | 0.69839 (8) | 0.0676 (3) | |
F2 | 0.68666 (12) | 0.97767 (11) | 0.54053 (10) | 0.0686 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0438 (6) | 0.0373 (7) | 0.0310 (9) | −0.0007 (5) | 0.0095 (6) | −0.0010 (5) |
C2 | 0.0417 (6) | 0.0361 (7) | 0.0292 (9) | −0.0008 (4) | 0.0096 (6) | −0.0007 (5) |
C3 | 0.0536 (7) | 0.0331 (6) | 0.0325 (9) | 0.0016 (5) | 0.0107 (6) | 0.0007 (5) |
C4 | 0.0604 (8) | 0.0391 (7) | 0.0356 (10) | 0.0030 (5) | 0.0095 (7) | 0.0064 (5) |
C5 | 0.0544 (7) | 0.0511 (8) | 0.0248 (9) | −0.0034 (5) | 0.0065 (6) | −0.0039 (6) |
C6 | 0.0569 (7) | 0.0347 (7) | 0.0395 (10) | −0.0068 (5) | 0.0113 (7) | −0.0071 (5) |
C7 | 0.0470 (7) | 0.0337 (6) | 0.0323 (10) | −0.0032 (5) | 0.0097 (6) | 0.0017 (5) |
O1 | 0.0712 (6) | 0.0401 (5) | 0.0296 (7) | −0.0009 (4) | 0.0077 (5) | 0.0017 (4) |
O2 | 0.0771 (6) | 0.0378 (5) | 0.0319 (7) | −0.0016 (4) | 0.0087 (5) | −0.0040 (4) |
O3 | 0.0836 (7) | 0.0340 (5) | 0.0402 (7) | −0.0031 (4) | 0.0091 (6) | 0.0042 (4) |
F1 | 0.0996 (7) | 0.0677 (6) | 0.0287 (6) | −0.0032 (5) | 0.0065 (5) | −0.0070 (4) |
F2 | 0.1113 (7) | 0.0403 (5) | 0.0474 (7) | −0.0096 (4) | 0.0111 (6) | −0.0140 (4) |
C1—O1 | 1.2429 (15) | C4—H4 | 0.9300 |
C1—O1 | 1.2429 (15) | C5—F1 | 1.3392 (16) |
C1—O2 | 1.3083 (14) | C5—C6 | 1.375 (2) |
C1—C2 | 1.458 (2) | C6—F2 | 1.3469 (14) |
C2—C3 | 1.3994 (18) | C6—C7 | 1.376 (2) |
C2—C7 | 1.4014 (17) | C7—O3 | 1.3502 (16) |
C3—C4 | 1.369 (2) | O2—H2 | 0.8200 |
C3—H3 | 0.9300 | O3—H3A | 0.8200 |
C4—C5 | 1.3777 (19) | ||
O1—C1—O2 | 121.92 (13) | C5—C4—H4 | 120.8 |
O1—C1—O2 | 121.92 (13) | F1—C5—C6 | 118.35 (12) |
O1—C1—C2 | 122.39 (11) | F1—C5—C4 | 120.45 (12) |
O1—C1—C2 | 122.39 (11) | C6—C5—C4 | 121.21 (14) |
O2—C1—C2 | 115.69 (11) | F2—C6—C5 | 119.09 (14) |
C3—C2—C7 | 119.27 (13) | F2—C6—C7 | 119.82 (12) |
C3—C2—C1 | 121.06 (11) | C5—C6—C7 | 121.06 (12) |
C7—C2—C1 | 119.66 (11) | O3—C7—C6 | 117.00 (12) |
C4—C3—C2 | 121.45 (12) | O3—C7—C2 | 124.47 (14) |
C4—C3—H3 | 119.3 | C6—C7—C2 | 118.53 (12) |
C2—C3—H3 | 119.3 | C1—O2—H2 | 109.5 |
C3—C4—C5 | 118.46 (13) | C7—O3—H3A | 109.5 |
C3—C4—H4 | 120.8 | ||
O1—C1—C2—C3 | −176.05 (11) | F1—C5—C6—C7 | 179.65 (11) |
O1—C1—C2—C3 | −176.05 (11) | C4—C5—C6—C7 | −0.5 (2) |
O2—C1—C2—C3 | 3.89 (17) | F2—C6—C7—O3 | 0.61 (19) |
O1—C1—C2—C7 | 2.86 (17) | C5—C6—C7—O3 | −177.90 (11) |
O1—C1—C2—C7 | 2.86 (17) | F2—C6—C7—C2 | −179.95 (10) |
O2—C1—C2—C7 | −177.19 (10) | C5—C6—C7—C2 | 1.5 (2) |
C7—C2—C3—C4 | 0.05 (18) | C3—C2—C7—O3 | 178.06 (11) |
C1—C2—C3—C4 | 178.97 (10) | C1—C2—C7—O3 | −0.87 (18) |
C2—C3—C4—C5 | 1.03 (19) | C3—C2—C7—C6 | −1.33 (18) |
C3—C4—C5—F1 | 179.05 (11) | C1—C2—C7—C6 | 179.74 (10) |
C3—C4—C5—C6 | −0.8 (2) | O2—C1—O1—O1 | 0.00 (14) |
F1—C5—C6—F2 | 1.1 (2) | C2—C1—O1—O1 | 0.00 (14) |
C4—C5—C6—F2 | −178.98 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O1 | 0.82 | 1.92 | 2.6231 (14) | 144 |
O2—H2···O1i | 0.82 | 1.85 | 2.6679 (14) | 175 |
C3—H3···O3ii | 0.93 | 2.60 | 3.5269 (16) | 177 |
C4—H4···F2ii | 0.93 | 2.53 | 3.2047 (16) | 129 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x, y−1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O1 | 0.82 | 1.92 | 2.6231 (14) | 143.9 |
O2—H2···O1i | 0.82 | 1.85 | 2.6679 (14) | 174.5 |
C3—H3···O3ii | 0.93 | 2.60 | 3.5269 (16) | 177.2 |
C4—H4···F2ii | 0.93 | 2.53 | 3.2047 (16) | 129.4 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x, y−1, z. |
Acknowledgements
The authors thank the DST–SERB (SR/FT/CS-145/2010) for finacial support and Dr S. Karmakar and Kibriya Siddique, SAIF, Gauhati University, Guwahati, India, for their help with the data collection.
References
Bruker (2009). APEX2, SAINT-Plus and XPREP. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Davies, L. C., Frank, F., Douglas, H., Jan, M., Ogilvie, L. M., Scanlon, I. J. & Springer, C. J. (2005). J. Med. Chem. 48, 5321–5328. Web of Science CrossRef PubMed CAS Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470. Web of Science CrossRef CAS IUCr Journals Google Scholar
Rajasekhar, N., Chandrasekhar, K. B., Sandeep, M., Rameswara Rao, M. & Balram, B. (2013). J. Appl. Chem. 2, 1489–1498. Google Scholar
Sheldrick, G. M. (2007). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Springer, C. J., Ion, N. D. & Barbara, P. R. (1994). J. Med. Chem. 37, 2361–2370. CrossRef CAS PubMed Web of Science Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Fluorinated benzoic acids have been used for the preparation of potential prodrugs intended for antibody and gene directed enzyme prodrugtherapy (Springer et al., 1994; Davies et al., 2005). Derivatives of fluorinated benzoic acid exhibit antimicrobial activity (Rajasekhar et al., 2013). In particular 3,4-difluoro-2-hydroxybenzoic acid has been used in the synthesis of benzisoxazole containing barbiturate derivatives, which shows prominent anticancer activity (our unpublished results). Hence, the crystal structure of the title compound, (I), C7H4F2O3, is determined.
In (I), the molecule is planar (r.m.s. deviation in the benzene ring = 0.006 (1)Å with a maximum deviation of 0.009 (1)Å for carbon) (Fig. 1). An intramolecular O3—H3A···O1 hydrogen bond in observed. In the crystal, inversion dimers linked by pairs of O2—H2···O1 hydrogen bonds are formed and generate R22(8) ring motifs (Fig. 2). Weak C3—H3···O3 and C4—H4···F2 intermolecular interactions and aromatic π-π stacking interactions [centroid-centroid separation = 3.7817 (9) Å] (Fig. 3) are also observed and contribute to packing stability.