organic compounds
6-Fluoro-4-oxo-4H-chromene-3-carbaldehyde
aSchool of Pharmaceutical Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
*Correspondence e-mail: ishi206@u-shizuoka-ken.ac.jp
In the title compound, C10H5FO3, the non-H atoms are essentially coplanar (r.m.s. deviation = 0.0071 Å), with the largest deviation from the mean plane [0.0203 (15) Å] being found for the ring C atom in the 2-position. In the crystal, molecules are linked into a three-dimensional architecture via C—H⋯O hydrogen bonds and π–π stacking interactions between the chromone units along the a-axis direction [centroid–centroid distance between the benzene and pyran rings = 3.707 (2) Å].
CCDC reference: 997449
Related literature
For related structures, see: Ishikawa (2014a,b). For halogen bonding, see: Auffinger et al. (2004); Metrangolo et al. (2005); Wilcken et al. (2013); Sirimulla et al. (2013).
Experimental
Crystal data
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Data collection: WinAFC Diffractometer Control Software (Rigaku, 1999); cell WinAFC Diffractometer Control Software; data reduction: WinAFC Diffractometer Control Software; program(s) used to solve structure: SIR2008 (Burla et al., 2007); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure.
Supporting information
CCDC reference: 997449
10.1107/S1600536814008502/tk5307sup1.cif
contains datablocks General, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536814008502/tk5307Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814008502/tk5307Isup3.cml
Halogen bonds have been found to occur in organic, inorganic and biological systems, and have recently attracted much attention in medicinal chemistry, chemical biology and supramolecular chemistry (Auffinger et al., 2004, Metrangolo et al., 2005, Wilcken et al., 2013, Sirimulla et al., 2013). We have recently reported the crystal structures of monohalogenated 3-formylchromone derivatives 6-bromo-4-oxo-4H-chromene-3-carbaldehyde (Ishikawa, 2014a) and 6-chloro-4-oxo-4H-chromene-3-carbaldehyde (Ishikawa, 2014b). Halogen bonding is observed in the former, but is not observed in the latter. As part of our interest in this type of chemical bonding, we herein report the
of a monofluorinated 3-formylchromone derivative, 6-fluoro-4-oxo-4H-chromene-3-carbaldehyde. The objective of this study is to reveal whether halogen bond(s) can be formed in the of this compound with a fluorine atom at the 6-position.The mean deviation of the least-square planes for the non-hydrogen atoms is 0.0071 Å, and the largest deviation is 0.0203 (15) Å for C1 (Fig. 1). This mean that the atoms are essentially coplanar. In the crystal, the molecules are linked via C—H···O hydrogen bonds and are further linked by π—π stacking interactions between the chromone units [centroid–centroid distance between the benzene and pyran rings = 3.707 (2) Å], into a three-dimensional architectureFig. 1. The distance between the fluorine and proximal formyl oxygen atoms [3.498 (2) Å, Fig.2 (bottom)] is far from halogen bonding. The fact that halogen bonding is observed in the of 6-bromo-4-oxo-4H-chromene-3-carbaldehyde (Fig. 2 (top)) but is not observed in those of 6-chloro-4-oxo-4H-chromene-3-carbaldehyde (Fig. 2 (middle)) and the title compound demonstrates the trend of the size of σ-hole on halogens (Br > Cl > F; Sirimulla et al., 2013).
Single crystals suitable for X-ray diffraction were obtained by slow evaporation at room temperature of an ethyl acetate solution of the commercially available title compound.
Data collection: WinAFC Diffractometer Control Software (Rigaku, 1999); cell
WinAFC Diffractometer Control Software (Rigaku, 1999); data reduction: WinAFC Diffractometer Control Software (Rigaku, 1999); program(s) used to solve structure: SIR2008 (Burla et al., 2007); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure (Rigaku, 2010).C10H5FO3 | F(000) = 392.00 |
Mr = 192.15 | Dx = 1.619 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: -P 2yn | Cell parameters from 25 reflections |
a = 7.8530 (19) Å | θ = 15.2–17.3° |
b = 5.6020 (17) Å | µ = 0.14 mm−1 |
c = 17.987 (5) Å | T = 100 K |
β = 95.09 (2)° | Plate, colourless |
V = 788.2 (4) Å3 | 0.30 × 0.20 × 0.12 mm |
Z = 4 |
Rigaku AFC-7R diffractometer | θmax = 27.5° |
ω–2θ scans | h = −10→10 |
2412 measured reflections | k = −4→7 |
1815 independent reflections | l = −23→13 |
1496 reflections with F2 > 2σ(F2) | 3 standard reflections every 150 reflections |
Rint = 0.024 | intensity decay: 3.4% |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.036 | H-atom parameters constrained |
wR(F2) = 0.106 | w = 1/[σ2(Fo2) + (0.0562P)2 + 0.3686P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
1815 reflections | Δρmax = 0.37 e Å−3 |
128 parameters | Δρmin = −0.22 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008) |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.011 (3) |
Secondary atom site location: difference Fourier map |
C10H5FO3 | V = 788.2 (4) Å3 |
Mr = 192.15 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 7.8530 (19) Å | µ = 0.14 mm−1 |
b = 5.6020 (17) Å | T = 100 K |
c = 17.987 (5) Å | 0.30 × 0.20 × 0.12 mm |
β = 95.09 (2)° |
Rigaku AFC-7R diffractometer | Rint = 0.024 |
2412 measured reflections | 3 standard reflections every 150 reflections |
1815 independent reflections | intensity decay: 3.4% |
1496 reflections with F2 > 2σ(F2) |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.37 e Å−3 |
1815 reflections | Δρmin = −0.22 e Å−3 |
128 parameters |
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
F1 | 0.24629 (11) | −0.31171 (17) | 0.68919 (5) | 0.0261 (3) | |
O1 | 0.33585 (12) | 0.28450 (17) | 0.45542 (5) | 0.0178 (3) | |
O2 | 0.05794 (13) | −0.32557 (18) | 0.41030 (5) | 0.0205 (3) | |
O3 | 0.13190 (13) | 0.13025 (19) | 0.23839 (5) | 0.0226 (3) | |
C1 | 0.26630 (17) | 0.2332 (3) | 0.38638 (8) | 0.0169 (3) | |
C2 | 0.17422 (16) | 0.0346 (3) | 0.36799 (7) | 0.0155 (3) | |
C3 | 0.14094 (16) | −0.1427 (3) | 0.42424 (7) | 0.0147 (3) | |
C4 | 0.19425 (16) | −0.2340 (3) | 0.56069 (7) | 0.0163 (3) | |
C5 | 0.26679 (17) | −0.1674 (3) | 0.62980 (7) | 0.0185 (3) | |
C6 | 0.36078 (17) | 0.0417 (3) | 0.64257 (8) | 0.0191 (3) | |
C7 | 0.38313 (17) | 0.1905 (3) | 0.58328 (8) | 0.0182 (3) | |
C8 | 0.21614 (16) | −0.0827 (3) | 0.50018 (7) | 0.0142 (3) | |
C9 | 0.30989 (16) | 0.1270 (3) | 0.51258 (7) | 0.0147 (3) | |
C10 | 0.10652 (17) | −0.0034 (3) | 0.28948 (7) | 0.0187 (3) | |
H1 | 0.2830 | 0.3442 | 0.3478 | 0.0203* | |
H2 | 0.1311 | −0.3782 | 0.5541 | 0.0195* | |
H3 | 0.4087 | 0.0810 | 0.6914 | 0.0229* | |
H4 | 0.4472 | 0.3338 | 0.5904 | 0.0218* | |
H5 | 0.0388 | −0.1414 | 0.2783 | 0.0224* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.0315 (5) | 0.0312 (5) | 0.0153 (5) | −0.0033 (4) | 0.0012 (4) | 0.0069 (4) |
O1 | 0.0222 (5) | 0.0154 (5) | 0.0157 (5) | −0.0035 (4) | 0.0014 (4) | 0.0000 (4) |
O2 | 0.0223 (5) | 0.0183 (5) | 0.0204 (5) | −0.0056 (4) | −0.0003 (4) | −0.0014 (4) |
O3 | 0.0293 (6) | 0.0222 (6) | 0.0161 (5) | 0.0045 (5) | 0.0013 (4) | 0.0016 (4) |
C1 | 0.0186 (7) | 0.0171 (7) | 0.0153 (6) | 0.0018 (5) | 0.0033 (5) | 0.0010 (5) |
C2 | 0.0146 (6) | 0.0166 (7) | 0.0154 (7) | 0.0024 (5) | 0.0026 (5) | −0.0014 (5) |
C3 | 0.0125 (6) | 0.0151 (6) | 0.0167 (7) | 0.0024 (5) | 0.0021 (5) | −0.0014 (5) |
C4 | 0.0149 (6) | 0.0163 (7) | 0.0178 (7) | 0.0001 (5) | 0.0029 (5) | −0.0001 (6) |
C5 | 0.0192 (7) | 0.0215 (7) | 0.0152 (7) | 0.0032 (6) | 0.0042 (5) | 0.0033 (6) |
C6 | 0.0177 (6) | 0.0246 (8) | 0.0147 (6) | 0.0027 (6) | −0.0003 (5) | −0.0034 (6) |
C7 | 0.0163 (7) | 0.0177 (7) | 0.0204 (7) | 0.0002 (5) | 0.0010 (5) | −0.0051 (6) |
C8 | 0.0120 (6) | 0.0154 (6) | 0.0154 (7) | 0.0019 (5) | 0.0023 (5) | −0.0015 (5) |
C9 | 0.0146 (6) | 0.0151 (7) | 0.0149 (6) | 0.0016 (5) | 0.0032 (5) | 0.0002 (5) |
C10 | 0.0190 (7) | 0.0197 (7) | 0.0171 (7) | 0.0024 (6) | 0.0005 (5) | −0.0015 (6) |
F1—C5 | 1.3606 (17) | C4—C8 | 1.4020 (19) |
O1—C1 | 1.3427 (17) | C5—C6 | 1.393 (2) |
O1—C9 | 1.3835 (17) | C6—C7 | 1.377 (2) |
O2—C3 | 1.2282 (17) | C7—C9 | 1.3946 (19) |
O3—C10 | 1.2155 (17) | C8—C9 | 1.394 (2) |
C1—C2 | 1.352 (2) | C1—H1 | 0.950 |
C2—C3 | 1.4579 (19) | C4—H2 | 0.950 |
C2—C10 | 1.4796 (18) | C6—H3 | 0.950 |
C3—C8 | 1.4780 (18) | C7—H4 | 0.950 |
C4—C5 | 1.3723 (18) | C10—H5 | 0.950 |
O1···C3 | 2.8691 (18) | C4···H3 | 3.2823 |
O2···C1 | 3.576 (2) | C5···H4 | 3.2513 |
O2···C4 | 2.8658 (17) | C6···H2 | 3.2881 |
O2···C10 | 2.8760 (18) | C8···H4 | 3.2937 |
O3···C1 | 2.8344 (19) | C9···H1 | 3.1941 |
C1···C7 | 3.587 (3) | C9···H2 | 3.2746 |
C1···C8 | 2.760 (2) | C9···H3 | 3.2509 |
C2···C9 | 2.7704 (19) | C10···H1 | 2.5600 |
C4···C7 | 2.813 (2) | H1···H5 | 3.4953 |
C5···C9 | 2.721 (2) | H3···H4 | 2.3436 |
C6···C8 | 2.796 (2) | F1···H3i | 2.6307 |
F1···F1i | 3.5513 (16) | F1···H4vi | 3.1761 |
F1···F1ii | 3.5513 (16) | F1···H5iv | 3.4684 |
F1···O2iii | 3.5044 (15) | F1···H5v | 2.6941 |
F1···O3iv | 3.4981 (16) | O1···H2vii | 3.1318 |
F1···O3v | 3.5584 (16) | O1···H4xiv | 2.8987 |
F1···C6i | 3.315 (2) | O2···H1vi | 2.8570 |
F1···C7vi | 3.5947 (19) | O2···H2iii | 2.3533 |
F1···C10iv | 3.3360 (18) | O3···H1x | 2.3664 |
F1···C10v | 3.3800 (18) | O3···H3xii | 2.4781 |
O1···O2vii | 3.1431 (15) | O3···H4xii | 2.9229 |
O1···C3vii | 3.5781 (19) | O3···H5xi | 2.9244 |
O1···C4vii | 3.5315 (19) | C1···H2iv | 3.4844 |
O1···C6viii | 3.5869 (19) | C1···H3viii | 3.4931 |
O1···C7viii | 3.5649 (19) | C1···H4xiv | 3.3095 |
O2···F1iii | 3.5044 (15) | C1···H5xi | 3.5228 |
O2···O1vi | 3.1431 (15) | C2···H2iv | 3.4665 |
O2···C1vi | 3.0162 (19) | C2···H3viii | 3.5928 |
O2···C4iii | 3.2351 (19) | C3···H1vi | 3.4163 |
O2···C7iv | 3.5572 (19) | C3···H2iii | 3.4741 |
O2···C9iv | 3.4951 (19) | C3···H4viii | 3.4389 |
O3···F1iv | 3.4981 (16) | C4···H4vi | 3.1477 |
O3···F1ix | 3.5584 (16) | C5···H4vi | 3.2399 |
O3···O3x | 3.3650 (17) | C5···H5iv | 3.4912 |
O3···O3xi | 3.3650 (17) | C5···H5v | 3.4391 |
O3···C1x | 3.3077 (19) | C6···H1viii | 3.5277 |
O3···C2xi | 3.4099 (18) | C6···H5v | 3.5118 |
O3···C6xii | 3.1985 (18) | C7···H2vii | 3.1377 |
O3···C7xii | 3.4120 (19) | C8···H4viii | 3.5193 |
O3···C10xi | 2.9773 (19) | C9···H2vii | 3.2243 |
C1···O2vii | 3.0162 (19) | C10···H1x | 2.8205 |
C1···O3xi | 3.3077 (19) | C10···H3xii | 3.2620 |
C1···C6viii | 3.390 (2) | H1···O2vii | 2.8570 |
C2···O3x | 3.4099 (18) | H1···O3xi | 2.3664 |
C2···C4iv | 3.453 (2) | H1···C3vii | 3.4163 |
C2···C5iv | 3.546 (2) | H1···C6viii | 3.5277 |
C3···O1vi | 3.5781 (19) | H1···C10xi | 2.8205 |
C3···C4iv | 3.403 (2) | H1···H3viii | 3.5122 |
C3···C8iv | 3.461 (2) | H1···H4xiv | 2.9261 |
C4···O1vi | 3.5315 (19) | H1···H5xi | 2.7690 |
C4···O2iii | 3.2351 (19) | H2···O1vi | 3.1318 |
C4···C2iv | 3.453 (2) | H2···O2iii | 2.3533 |
C4···C3iv | 3.403 (2) | H2···C1iv | 3.4844 |
C4···C7vi | 3.557 (3) | H2···C2iv | 3.4665 |
C5···C2iv | 3.546 (2) | H2···C3iii | 3.4741 |
C5···C10iv | 3.517 (2) | H2···C7vi | 3.1377 |
C6···F1ii | 3.315 (2) | H2···C9vi | 3.2243 |
C6···O1viii | 3.5869 (19) | H2···H2iii | 3.0288 |
C6···O3xiii | 3.1985 (18) | H2···H4vi | 2.9843 |
C6···C1viii | 3.390 (2) | H3···F1ii | 2.6307 |
C7···F1vii | 3.5947 (19) | H3···O3xiii | 2.4781 |
C7···O1viii | 3.5649 (19) | H3···C1viii | 3.4931 |
C7···O2iv | 3.5572 (19) | H3···C2viii | 3.5928 |
C7···O3xiii | 3.4120 (19) | H3···C10xiii | 3.2620 |
C7···C4vii | 3.557 (3) | H3···H1viii | 3.5122 |
C7···C9viii | 3.562 (2) | H3···H5v | 3.0440 |
C8···C3iv | 3.461 (2) | H4···F1vii | 3.1761 |
C8···C8iv | 3.518 (2) | H4···O1xiv | 2.8987 |
C9···O2iv | 3.4951 (19) | H4···O3xiii | 2.9229 |
C9···C7viii | 3.562 (2) | H4···C1xiv | 3.3095 |
C9···C9viii | 3.374 (2) | H4···C3viii | 3.4389 |
C10···F1iv | 3.3360 (18) | H4···C4vii | 3.1477 |
C10···F1ix | 3.3800 (18) | H4···C5vii | 3.2399 |
C10···O3x | 2.9773 (19) | H4···C8viii | 3.5193 |
C10···C5iv | 3.517 (2) | H4···H1xiv | 2.9261 |
F1···H2 | 2.5447 | H4···H2vii | 2.9843 |
F1···H3 | 2.5415 | H5···F1iv | 3.4684 |
O1···H4 | 2.5219 | H5···F1ix | 2.6941 |
O2···H2 | 2.6151 | H5···O3x | 2.9244 |
O2···H5 | 2.5814 | H5···C1x | 3.5228 |
O3···H1 | 2.5100 | H5···C5iv | 3.4912 |
C1···H5 | 3.2808 | H5···C5ix | 3.4391 |
C3···H1 | 3.2935 | H5···C6ix | 3.5118 |
C3···H2 | 2.6889 | H5···H1x | 2.7690 |
C3···H5 | 2.6767 | H5···H3ix | 3.0440 |
C1—O1—C9 | 118.43 (11) | C4—C8—C9 | 118.99 (12) |
O1—C1—C2 | 124.57 (13) | O1—C9—C7 | 116.03 (12) |
C1—C2—C3 | 121.05 (12) | O1—C9—C8 | 121.94 (11) |
C1—C2—C10 | 119.43 (13) | C7—C9—C8 | 122.02 (13) |
C3—C2—C10 | 119.53 (12) | O3—C10—C2 | 124.30 (13) |
O2—C3—C2 | 123.45 (12) | O1—C1—H1 | 117.713 |
O2—C3—C8 | 122.66 (12) | C2—C1—H1 | 117.717 |
C2—C3—C8 | 113.89 (12) | C5—C4—H2 | 121.008 |
C5—C4—C8 | 117.98 (13) | C8—C4—H2 | 121.007 |
F1—C5—C4 | 118.76 (13) | C5—C6—H3 | 120.543 |
F1—C5—C6 | 117.91 (12) | C7—C6—H3 | 120.538 |
C4—C5—C6 | 123.32 (13) | C6—C7—H4 | 120.618 |
C5—C6—C7 | 118.92 (13) | C9—C7—H4 | 120.626 |
C6—C7—C9 | 118.76 (13) | O3—C10—H5 | 117.845 |
C3—C8—C4 | 120.90 (12) | C2—C10—H5 | 117.850 |
C3—C8—C9 | 120.11 (12) | ||
C1—O1—C9—C7 | −179.22 (10) | C8—C4—C5—F1 | 179.77 (11) |
C1—O1—C9—C8 | 0.80 (17) | C8—C4—C5—C6 | −0.1 (2) |
C9—O1—C1—C2 | −1.26 (19) | H2—C4—C5—F1 | −0.2 |
C9—O1—C1—H1 | 178.7 | H2—C4—C5—C6 | 179.9 |
O1—C1—C2—C3 | 0.9 (2) | H2—C4—C8—C3 | 0.3 |
O1—C1—C2—C10 | −179.01 (11) | H2—C4—C8—C9 | −179.9 |
H1—C1—C2—C3 | −179.1 | F1—C5—C6—C7 | −179.98 (11) |
H1—C1—C2—C10 | 1.0 | F1—C5—C6—H3 | 0.0 |
C1—C2—C3—O2 | 179.92 (12) | C4—C5—C6—C7 | −0.1 (2) |
C1—C2—C3—C8 | 0.01 (18) | C4—C5—C6—H3 | 179.9 |
C1—C2—C10—O3 | 2.2 (2) | C5—C6—C7—C9 | 0.4 (2) |
C1—C2—C10—H5 | −177.8 | C5—C6—C7—H4 | −179.6 |
C3—C2—C10—O3 | −177.66 (12) | H3—C6—C7—C9 | −179.6 |
C3—C2—C10—H5 | 2.3 | H3—C6—C7—H4 | 0.4 |
C10—C2—C3—O2 | −0.21 (19) | C6—C7—C9—O1 | 179.57 (11) |
C10—C2—C3—C8 | 179.87 (11) | C6—C7—C9—C8 | −0.5 (2) |
O2—C3—C8—C4 | −0.5 (2) | H4—C7—C9—O1 | −0.4 |
O2—C3—C8—C9 | 179.68 (12) | H4—C7—C9—C8 | 179.6 |
C2—C3—C8—C4 | 179.39 (11) | C3—C8—C9—O1 | 0.01 (19) |
C2—C3—C8—C9 | −0.40 (17) | C3—C8—C9—C7 | −179.97 (11) |
C5—C4—C8—C3 | −179.74 (11) | C4—C8—C9—O1 | −179.78 (11) |
C5—C4—C8—C9 | 0.05 (19) | C4—C8—C9—C7 | 0.24 (19) |
Symmetry codes: (i) −x+1/2, y−1/2, −z+3/2; (ii) −x+1/2, y+1/2, −z+3/2; (iii) −x, −y−1, −z+1; (iv) −x, −y, −z+1; (v) x+1/2, −y−1/2, z+1/2; (vi) x, y−1, z; (vii) x, y+1, z; (viii) −x+1, −y, −z+1; (ix) x−1/2, −y−1/2, z−1/2; (x) −x+1/2, y−1/2, −z+1/2; (xi) −x+1/2, y+1/2, −z+1/2; (xii) x−1/2, −y+1/2, z−1/2; (xiii) x+1/2, −y+1/2, z+1/2; (xiv) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···O3xi | 0.95 | 2.37 | 3.308 (2) | 171 |
C4—H2···O2iii | 0.95 | 2.35 | 3.235 (2) | 154 |
C6—H3···O3xiii | 0.95 | 2.48 | 3.198 (2) | 133 |
Symmetry codes: (iii) −x, −y−1, −z+1; (xi) −x+1/2, y+1/2, −z+1/2; (xiii) x+1/2, −y+1/2, z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···O3i | 0.95 | 2.37 | 3.308 (2) | 171 |
C4—H2···O2ii | 0.95 | 2.35 | 3.235 (2) | 154 |
C6—H3···O3iii | 0.95 | 2.48 | 3.198 (2) | 133 |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) −x, −y−1, −z+1; (iii) x+1/2, −y+1/2, z+1/2. |
Acknowledgements
The author acknowledges the University of Shizuoka for instrumental support.
References
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