organic compounds
6-Chloro-7-fluoro-4-oxo-4H-chromene-3-carbaldehyde
aSchool of Pharmaceutical Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
*Correspondence e-mail: ishi206@u-shizuoka-ken.ac.jp
In the title compound, C10H4ClFO3, a chlorinated and fluorinated 3-formylchromone derivative, all atoms are essentially coplanar (r.m.s. = 0.0336 Å for the non-H atoms), with the largest deviation from the least-squares plane [0.062 (2) Å] being for a benzene-ring C atom. In the crystal, molecules are linked through stacking interactions [centroid–centroid distance between the benzene and pyran rings = 3.958 (3) Å and interplanar distance = 3.259 (3) Å], C—H⋯O hydrogen bonds, and short C⋯O contacts [2.879 (3) Å]. Unsymmetrical halogen–halogen interactions between the Cl and F atoms [Cl⋯F = 3.049 (3) Å, C—Cl⋯F = 148.10 (9)° and C—F⋯Cl = 162.06 (13)°] are also formed, giving a meandering two-dimensional network along the a axis.
Keywords: crystal structure.
CCDC reference: 1009489
Related literature
For related structures, see: Ishikawa & Motohashi (2013); Ishikawa (2014). For halogen bonding, see: Auffinger et al. (2004); Metrangolo et al. (2005); Wilcken et al. (2013); Sirimulla et al. (2013). For halogen–halogen interactions, see: Hathwar & Guru Row (2011); Metrangolo & Resnati (2014); Mukherjee & Desiraju (2014).
Experimental
Crystal data
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Data collection: WinAFC Diffractometer Control Software (Rigaku, 1999; cell WinAFC Diffractometer Control Software; data reduction: WinAFC Diffractometer Control Software; program(s) used to solve structure: SIR2008 (Burla et al., 2007); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure.
Supporting information
CCDC reference: 1009489
https://doi.org/10.1107/S1600536814014706/zl2593sup1.cif
contains datablocks General, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536814014706/zl2593Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536814014706/zl2593Isup3.cml
5-Chloro-4-fluoro-2-hydroxyacetophenone was prepared from 4-chloro-3-fluorophenol by Fries rearrangement reaction. To a solution of 5-chloro-4-fluoro-2-hydroxyacetophenone (2.4 mmol) in N,N-dimethylformamide (10 ml) was added dropwise POCl3 (6.0 mmol) at 0 °C. After the mixture was stirred for 14 h at room temperature, water (30 ml) was added. The precipitates were collected, washed with water, and dried in vacuo (yield: 58%). 1H NMR (400 MHz, CDCl3): δ = 7.36 (d, 1H, J = 8.3 Hz), 8.37 (d, 1H, J = 8.3 Hz), 8.52 (s, 1H), 10.36 (s, 1H). DART-MS calcd for [C10H4Cl1F1O3 + H+]: 226.991, found 227.014. Single crystals suitable for X-ray diffraction were obtained by slow evaporation of an ethyl acetate/chloroform solution of the title compound at room temperature.
The C(sp2)-bound hydrogen atoms were placed in geometrical positions [C–H 0.95 Å, Uiso(H) = 1.2Ueq(C)], and refined using a riding model.
Halogen bonding and halogen···halogen interactions have recently attracted much attention in medicinal chemistry, chemical biology, supramolecular chemistry and crystal engineering (Auffinger et al., 2004, Metrangolo et al., 2005, Wilcken et al., 2013, Sirimulla et al., 2013, Mukherjee et al., 2014, Metrangolo et al., 2014). We have recently reported the crystal structures of chlorinated 3-formylchromone derivatives 6,8-dichloro-4-oxochromene-3-carbaldehyde (Ishikawa & Motohashi, 2013) and 6-chloro-4-oxo-4H-chromene-3-carbaldehyde (Ishikawa, 2014). Halogen bonding between the formyl oxygen atom and the chlorine atom at the 8-position and type I halogen···halogen interaction between the chlorine atoms at 6-position are observed in 6,8-dichloro-4-oxochromene-3-carbaldehyde (Fig.3 (top)). On the other hand, a van der Waals contact between the formyl oxygen atom and the chlorine atom at 6-position is found in 6-chloro-4-oxo-4H-chromene-3-carbaldehyde (Fig.3 (middle)). As part of our interest in these types of chemical bonding, we herein report the
of a monochlorinated and monofluorinated 3-formylchromone derivative, 6-chloro-7-fluoro-4-oxo-4H-chromene-3-carbaldehyde. The objective of this study is to reveal the of the vicinal electron-withdrawing substituent on the chlorine atom at 6-position and the interaction mode(s).The mean deviation of the least-square planes for the non-hydrogen atoms is 0.0336 Å, and the largest deviations is 0.062 (2) Å for C4. These mean that these atoms are essentially coplanar (Fig.1).
In the crystal, the molecules are linked through stacking interaction between the translation-symmetry equivalenti molecules [centroid–centroid distance between the benzene and pyran rings of the 4H-chromene units = 3.958 (3) Å, interplanar distance 3.259 (3) Å, i: x, y, z + 1], and through C–H···O hydrogen bonds (see hydrogen bonding table).
A contact between the formyl oxygen atom and the chlorine atom at 6-position is not found in the title compound. Instead, unsymmetrical halogen···halogen interactions are formed between the chlorine and fluorine atoms [Cl1···F1 = 3.049 (3) Å, C5–Cl1···F1 = 148.10 (9)°, C6–F1···Cl1 = 162.06 (13)°] to give a meandering two-dimensional-network along the a axis, as shown in Fig.2 and Fig.3 (bottom). It is suggested that the electron-withdrawing substituent at 7-position should make the σ-hole of the chlorine atom at 6-position larger, and the electropositive region of the chlorine atom should contact the electronegative region of the fluorine atom (Hathwar et al., 2011). Symmetrical halogen···halogen interactions (F···F and Cl···Cl) are not observed in the title compound, which might support that the unsymmetrical Cl···F interaction is more favorable than the symmetrical ones.
Furthermore, short contacts between the formyl C10 and O3ii atoms [2.879 (3) Å, ii: –x + 1/2, –y + 1, z + 1/2] are observed. This interesting feature might be caused by strong dipole-dipole interaction between the formyl groups polarized by introduction of the chlorine and fluorine atoms into the chromone ring. These findings should be helpful to understand interaction of halogenated ligands with proteins, and are thus valuable for rational drug design.
For related structures, see: Ishikawa & Motohashi (2013); Ishikawa (2014). For halogen bonding, see: Auffinger et al. (2004); Metrangolo et al. (2005); Wilcken et al. (2013); Sirimulla et al. (2013). For halogen–halogen interactions, see: Hathwar & Guru Row (2011); Metrangolo & Resnati (2014); Mukherjee & Desiraju (2014).
Data collection: WinAFC Diffractometer Control Software (Rigaku, 1999); cell
WinAFC Diffractometer Control Software (Rigaku, 1999); data reduction: WinAFC Diffractometer Control Software (Rigaku, 1999); program(s) used to solve structure: SIR2008 (Burla et al., 2007); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure (Rigaku, 2010).C10H4ClFO3 | F(000) = 456.00 |
Mr = 226.59 | Dx = 1.715 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 25 reflections |
a = 5.725 (3) Å | θ = 15.0–17.5° |
b = 32.57 (3) Å | µ = 0.43 mm−1 |
c = 4.706 (4) Å | T = 100 K |
V = 877.4 (11) Å3 | Prismatic, yellow |
Z = 4 | 0.40 × 0.25 × 0.08 mm |
Rigaku AFC-7R diffractometer | Rint = 0.009 |
ω scans | θmax = 27.5° |
Absorption correction: ψ scan (North et al., 1968) | h = −4→7 |
Tmin = 0.894, Tmax = 0.966 | k = 0→42 |
1692 measured reflections | l = −3→6 |
1346 independent reflections | 3 standard reflections every 150 reflections |
1249 reflections with F2 > 2σ(F2) | intensity decay: −0.1% |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.027 | H-atom parameters constrained |
wR(F2) = 0.074 | w = 1/[σ2(Fo2) + (0.0395P)2 + 0.3855P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max < 0.001 |
1346 reflections | Δρmax = 0.29 e Å−3 |
136 parameters | Δρmin = −0.25 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 105 Friedel Pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.31 (9) |
Secondary atom site location: difference Fourier map |
C10H4ClFO3 | V = 877.4 (11) Å3 |
Mr = 226.59 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 5.725 (3) Å | µ = 0.43 mm−1 |
b = 32.57 (3) Å | T = 100 K |
c = 4.706 (4) Å | 0.40 × 0.25 × 0.08 mm |
Rigaku AFC-7R diffractometer | 1249 reflections with F2 > 2σ(F2) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.009 |
Tmin = 0.894, Tmax = 0.966 | 3 standard reflections every 150 reflections |
1692 measured reflections | intensity decay: −0.1% |
1346 independent reflections |
R[F2 > 2σ(F2)] = 0.027 | H-atom parameters constrained |
wR(F2) = 0.074 | Δρmax = 0.29 e Å−3 |
S = 1.09 | Δρmin = −0.25 e Å−3 |
1346 reflections | Absolute structure: Flack (1983), 105 Friedel Pairs |
136 parameters | Absolute structure parameter: 0.31 (9) |
0 restraints |
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.39186 (10) | 0.273972 (16) | 1.18743 (14) | 0.02563 (15) | |
F1 | −0.0630 (3) | 0.29836 (4) | 1.4050 (3) | 0.0262 (4) | |
O1 | −0.1743 (3) | 0.41526 (4) | 0.8442 (4) | 0.0170 (4) | |
O2 | 0.4433 (3) | 0.39789 (5) | 0.4232 (4) | 0.0197 (4) | |
O3 | 0.0422 (3) | 0.49703 (5) | 0.2146 (4) | 0.0221 (4) | |
C1 | −0.1015 (4) | 0.44135 (6) | 0.6415 (5) | 0.0164 (5) | |
C2 | 0.1017 (4) | 0.43740 (6) | 0.4982 (5) | 0.0150 (4) | |
C3 | 0.2589 (4) | 0.40294 (6) | 0.5529 (5) | 0.0151 (5) | |
C4 | 0.3078 (4) | 0.34031 (6) | 0.8557 (5) | 0.0166 (5) | |
C5 | 0.2284 (4) | 0.31479 (6) | 1.0679 (5) | 0.0179 (5) | |
C6 | 0.0125 (4) | 0.32307 (6) | 1.1954 (5) | 0.0179 (5) | |
C7 | −0.1221 (4) | 0.35619 (6) | 1.1204 (5) | 0.0168 (5) | |
C8 | 0.1766 (4) | 0.37479 (6) | 0.7742 (5) | 0.0146 (5) | |
C9 | −0.0373 (4) | 0.38186 (6) | 0.9084 (5) | 0.0139 (5) | |
C10 | 0.1639 (4) | 0.46812 (6) | 0.2808 (5) | 0.0174 (5) | |
H1 | −0.1991 | 0.4640 | 0.5960 | 0.0197* | |
H2 | 0.4520 | 0.3346 | 0.7640 | 0.0200* | |
H3 | −0.2678 | 0.3614 | 1.2100 | 0.0202* | |
H4 | 0.3094 | 0.4650 | 0.1861 | 0.0208* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0256 (3) | 0.0191 (3) | 0.0322 (3) | 0.0053 (3) | −0.0045 (3) | 0.0062 (3) |
F1 | 0.0290 (8) | 0.0242 (7) | 0.0256 (8) | −0.0050 (7) | −0.0003 (7) | 0.0083 (6) |
O1 | 0.0134 (7) | 0.0183 (7) | 0.0194 (8) | 0.0035 (6) | 0.0028 (7) | 0.0013 (7) |
O2 | 0.0160 (8) | 0.0231 (8) | 0.0199 (8) | 0.0032 (7) | 0.0050 (8) | 0.0007 (7) |
O3 | 0.0219 (8) | 0.0194 (7) | 0.0250 (9) | 0.0017 (7) | −0.0026 (8) | 0.0047 (7) |
C1 | 0.0170 (10) | 0.0144 (9) | 0.0180 (11) | 0.0007 (8) | −0.0019 (11) | −0.0003 (9) |
C2 | 0.0160 (10) | 0.0143 (9) | 0.0146 (10) | 0.0003 (9) | −0.0007 (10) | −0.0016 (8) |
C3 | 0.0150 (10) | 0.0159 (10) | 0.0144 (10) | −0.0004 (9) | −0.0025 (10) | −0.0029 (9) |
C4 | 0.0161 (10) | 0.0170 (10) | 0.0169 (11) | 0.0015 (9) | −0.0019 (10) | −0.0031 (9) |
C5 | 0.0193 (11) | 0.0136 (10) | 0.0207 (11) | 0.0023 (9) | −0.0049 (10) | −0.0004 (9) |
C6 | 0.0208 (11) | 0.0168 (10) | 0.0162 (11) | −0.0050 (9) | −0.0007 (11) | 0.0007 (10) |
C7 | 0.0152 (10) | 0.0202 (10) | 0.0150 (10) | −0.0022 (9) | 0.0002 (10) | −0.0025 (9) |
C8 | 0.0157 (10) | 0.0142 (9) | 0.0137 (10) | −0.0001 (8) | −0.0013 (9) | −0.0026 (9) |
C9 | 0.0137 (10) | 0.0134 (9) | 0.0147 (10) | −0.0004 (8) | −0.0034 (9) | −0.0029 (9) |
C10 | 0.0175 (10) | 0.0191 (10) | 0.0156 (10) | −0.0009 (9) | −0.0010 (10) | −0.0013 (9) |
Cl1—C5 | 1.720 (3) | C4—C5 | 1.377 (4) |
F1—C6 | 1.344 (3) | C4—C8 | 1.405 (3) |
O1—C1 | 1.344 (3) | C5—C6 | 1.400 (4) |
O1—C9 | 1.375 (3) | C6—C7 | 1.372 (3) |
O2—C3 | 1.231 (3) | C7—C9 | 1.389 (3) |
O3—C10 | 1.212 (3) | C8—C9 | 1.397 (3) |
C1—C2 | 1.351 (4) | C1—H1 | 0.950 |
C2—C3 | 1.461 (3) | C4—H2 | 0.950 |
C2—C10 | 1.474 (3) | C7—H3 | 0.950 |
C3—C8 | 1.465 (3) | C10—H4 | 0.950 |
Cl1···F1 | 2.908 (2) | F1···H3 | 2.5356 |
F1···C9 | 3.589 (4) | O1···H3 | 2.5157 |
O1···C3 | 2.862 (3) | O2···H2 | 2.6126 |
O1···C6 | 3.590 (4) | O2···H4 | 2.5720 |
O2···C1 | 3.576 (4) | O3···H1 | 2.5075 |
O2···C4 | 2.874 (3) | C1···H4 | 3.2741 |
O2···C10 | 2.870 (3) | C3···H1 | 3.2973 |
O3···C1 | 2.828 (3) | C3···H2 | 2.6768 |
C1···C7 | 3.576 (4) | C3···H4 | 2.6745 |
C1···C8 | 2.761 (4) | C5···H3 | 3.2890 |
C2···C9 | 2.763 (4) | C6···H2 | 3.2547 |
C4···C7 | 2.806 (4) | C8···H3 | 3.2967 |
C5···C9 | 2.766 (4) | C9···H1 | 3.1900 |
C6···C8 | 2.766 (4) | C9···H2 | 3.2681 |
Cl1···F1i | 3.380 (3) | C10···H1 | 2.5568 |
Cl1···F1ii | 3.049 (3) | H1···H4 | 3.4924 |
F1···Cl1iii | 3.380 (3) | Cl1···H2v | 3.3732 |
F1···Cl1iv | 3.049 (3) | Cl1···H3i | 3.4511 |
F1···C4v | 3.297 (3) | F1···H2vi | 3.4577 |
F1···C5v | 3.577 (4) | F1···H2v | 3.5970 |
F1···C8v | 3.331 (3) | O1···H2iii | 3.4090 |
O1···O2iii | 3.006 (3) | O1···H3viii | 3.5035 |
O1···O2vi | 3.540 (3) | O1···H4v | 3.5895 |
O1···O3v | 3.416 (3) | O2···H1i | 3.0802 |
O1···C2v | 3.533 (4) | O2···H3vii | 2.2707 |
O1···C3iii | 3.545 (3) | O3···H1viii | 3.3969 |
O1···C10v | 3.307 (3) | O3···H1xi | 2.4042 |
O2···O1vii | 3.540 (3) | O3···H4ix | 2.9039 |
O2···O1i | 3.006 (3) | O3···H4x | 2.6777 |
O2···C1i | 3.138 (3) | C1···H3viii | 3.4372 |
O2···C4viii | 3.354 (4) | C1···H4v | 3.5633 |
O2···C5viii | 3.411 (4) | C1···H4x | 3.4837 |
O2···C7vii | 3.173 (3) | C2···H3viii | 3.5279 |
O2···C8viii | 3.496 (4) | C2···H4v | 3.5642 |
O3···O1viii | 3.416 (3) | C2···H4x | 3.3373 |
O3···O3ix | 3.352 (3) | C3···H3vii | 3.4320 |
O3···O3x | 3.352 (3) | C4···H3i | 3.0253 |
O3···C1viii | 3.353 (4) | C5···H2v | 3.5757 |
O3···C1xi | 3.242 (3) | C5···H3i | 3.3268 |
O3···C2ix | 3.123 (3) | C7···H2iii | 3.0416 |
O3···C3ix | 3.534 (4) | C9···H2iii | 3.3732 |
O3···C10ix | 2.879 (3) | C10···H1xi | 3.5669 |
O3···C10x | 3.349 (4) | C10···H4ix | 3.5488 |
C1···O2iii | 3.138 (3) | C10···H4x | 2.8982 |
C1···O3v | 3.353 (4) | H1···O2iii | 3.0802 |
C1···O3xii | 3.242 (3) | H1···O3v | 3.3969 |
C1···C10v | 3.481 (4) | H1···O3xii | 2.4042 |
C2···O1viii | 3.533 (4) | H1···C10xii | 3.5669 |
C2···O3x | 3.123 (3) | H1···H1xi | 3.3725 |
C2···C7viii | 3.435 (4) | H1···H1xii | 3.3725 |
C2···C9viii | 3.407 (4) | H1···H4iii | 3.4116 |
C3···O1i | 3.545 (3) | H1···H4x | 3.2403 |
C3···O3x | 3.534 (4) | H2···Cl1viii | 3.3732 |
C3···C6viii | 3.404 (4) | H2···F1viii | 3.5970 |
C3···C7viii | 3.349 (4) | H2···F1vii | 3.4577 |
C3···C9viii | 3.542 (4) | H2···O1i | 3.4090 |
C4···F1viii | 3.297 (3) | H2···C5viii | 3.5757 |
C4···O2v | 3.354 (4) | H2···C7i | 3.0416 |
C4···C6viii | 3.581 (4) | H2···C9i | 3.3732 |
C4···C7i | 3.531 (4) | H2···H3vii | 3.1828 |
C5···F1viii | 3.577 (4) | H2···H3i | 2.7815 |
C5···O2v | 3.411 (4) | H3···Cl1iii | 3.4511 |
C6···C3v | 3.404 (4) | H3···O1v | 3.5035 |
C6···C4v | 3.581 (4) | H3···O2vi | 2.2707 |
C6···C8v | 3.337 (4) | H3···C1v | 3.4372 |
C7···O2vi | 3.173 (3) | H3···C2v | 3.5279 |
C7···C2v | 3.435 (4) | H3···C3vi | 3.4320 |
C7···C3v | 3.349 (4) | H3···C4iii | 3.0253 |
C7···C4iii | 3.531 (4) | H3···C5iii | 3.3268 |
C7···C8v | 3.571 (4) | H3···H2iii | 2.7815 |
C8···F1viii | 3.331 (3) | H3···H2vi | 3.1828 |
C8···O2v | 3.496 (4) | H4···O1viii | 3.5895 |
C8···C6viii | 3.337 (4) | H4···O3ix | 2.6777 |
C8···C7viii | 3.571 (4) | H4···O3x | 2.9039 |
C9···C2v | 3.407 (4) | H4···C1viii | 3.5633 |
C9···C3v | 3.542 (4) | H4···C1ix | 3.4837 |
C9···C10v | 3.506 (4) | H4···C2viii | 3.5642 |
C10···O1viii | 3.307 (3) | H4···C2ix | 3.3373 |
C10···O3ix | 3.349 (4) | H4···C10ix | 2.8982 |
C10···O3x | 2.879 (3) | H4···C10x | 3.5488 |
C10···C1viii | 3.481 (4) | H4···H1i | 3.4116 |
C10···C9viii | 3.506 (4) | H4···H1ix | 3.2403 |
C10···C10ix | 3.289 (4) | H4···H4ix | 3.3442 |
C10···C10x | 3.289 (4) | H4···H4x | 3.3442 |
Cl1···H2 | 2.8259 | ||
C1—O1—C9 | 118.64 (17) | C3—C8—C4 | 121.5 (2) |
O1—C1—C2 | 124.15 (19) | C3—C8—C9 | 120.02 (19) |
C1—C2—C3 | 121.03 (19) | C4—C8—C9 | 118.5 (2) |
C1—C2—C10 | 119.31 (19) | O1—C9—C7 | 115.77 (19) |
C3—C2—C10 | 119.7 (2) | O1—C9—C8 | 122.08 (19) |
O2—C3—C2 | 122.9 (2) | C7—C9—C8 | 122.1 (2) |
O2—C3—C8 | 123.02 (19) | O3—C10—C2 | 124.5 (2) |
C2—C3—C8 | 114.06 (19) | O1—C1—H1 | 117.920 |
C5—C4—C8 | 120.3 (2) | C2—C1—H1 | 117.932 |
Cl1—C5—C4 | 121.60 (18) | C5—C4—H2 | 119.879 |
Cl1—C5—C6 | 119.27 (17) | C8—C4—H2 | 119.849 |
C4—C5—C6 | 119.1 (2) | C6—C7—H3 | 121.234 |
F1—C6—C5 | 118.87 (19) | C9—C7—H3 | 121.245 |
F1—C6—C7 | 118.6 (2) | O3—C10—H4 | 117.735 |
C5—C6—C7 | 122.5 (2) | C2—C10—H4 | 117.738 |
C6—C7—C9 | 117.5 (2) | ||
C1—O1—C9—C7 | 179.81 (16) | C8—C4—C5—Cl1 | −176.25 (17) |
C1—O1—C9—C8 | 1.4 (3) | C8—C4—C5—C6 | 1.7 (3) |
C9—O1—C1—C2 | −1.3 (3) | H2—C4—C5—Cl1 | 3.7 |
C9—O1—C1—H1 | 178.7 | H2—C4—C5—C6 | −178.3 |
O1—C1—C2—C3 | 1.1 (4) | H2—C4—C8—C3 | −1.2 |
O1—C1—C2—C10 | −179.67 (17) | H2—C4—C8—C9 | 178.6 |
H1—C1—C2—C3 | −178.9 | Cl1—C5—C6—F1 | −1.2 (3) |
H1—C1—C2—C10 | 0.3 | Cl1—C5—C6—C7 | 176.87 (14) |
C1—C2—C3—O2 | 178.64 (19) | C4—C5—C6—F1 | −179.17 (19) |
C1—C2—C3—C8 | −0.9 (3) | C4—C5—C6—C7 | −1.1 (4) |
C1—C2—C10—O3 | −1.5 (4) | F1—C6—C7—C9 | 178.33 (16) |
C1—C2—C10—H4 | 178.5 | F1—C6—C7—H3 | −1.7 |
C3—C2—C10—O3 | 177.79 (19) | C5—C6—C7—C9 | 0.3 (4) |
C3—C2—C10—H4 | −2.2 | C5—C6—C7—H3 | −179.7 |
C10—C2—C3—O2 | −0.6 (3) | C6—C7—C9—O1 | −178.42 (18) |
C10—C2—C3—C8 | 179.86 (17) | C6—C7—C9—C8 | −0.0 (3) |
O2—C3—C8—C4 | 1.2 (4) | H3—C7—C9—O1 | 1.6 |
O2—C3—C8—C9 | −178.51 (18) | H3—C7—C9—C8 | 180.0 |
C2—C3—C8—C4 | −179.22 (17) | C3—C8—C9—O1 | −1.3 (3) |
C2—C3—C8—C9 | 1.0 (3) | C3—C8—C9—C7 | −179.63 (17) |
C5—C4—C8—C3 | 178.79 (18) | C4—C8—C9—O1 | 178.90 (18) |
C5—C4—C8—C9 | −1.5 (3) | C4—C8—C9—C7 | 0.6 (3) |
Symmetry codes: (i) x+1, y, z; (ii) x+1/2, −y+1/2, −z+3; (iii) x−1, y, z; (iv) x−1/2, −y+1/2, −z+3; (v) x, y, z+1; (vi) x−1, y, z+1; (vii) x+1, y, z−1; (viii) x, y, z−1; (ix) −x+1/2, −y+1, z−1/2; (x) −x+1/2, −y+1, z+1/2; (xi) −x−1/2, −y+1, z−1/2; (xii) −x−1/2, −y+1, z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H3···O2vi | 0.95 | 2.27 | 3.173 (3) | 158 |
C1—H1···O3xii | 0.95 | 2.40 | 3.242 (3) | 147 |
Symmetry codes: (vi) x−1, y, z+1; (xii) −x−1/2, −y+1, z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H3···O2i | 0.95 | 2.271 | 3.173 (3) | 158 |
C1—H1···O3ii | 0.95 | 2.404 | 3.242 (3) | 147 |
Symmetry codes: (i) x−1, y, z+1; (ii) −x−1/2, −y+1, z+1/2. |
Acknowledgements
I acknowledge the University of Shizuoka for instrumental support.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Halogen bonding and halogen···halogen interactions have recently attracted much attention in medicinal chemistry, chemical biology, supramolecular chemistry and crystal engineering (Auffinger et al., 2004, Metrangolo et al., 2005, Wilcken et al., 2013, Sirimulla et al., 2013, Mukherjee et al., 2014, Metrangolo et al., 2014). We have recently reported the crystal structures of chlorinated 3-formylchromone derivatives 6,8-dichloro-4-oxochromene-3-carbaldehyde (Ishikawa & Motohashi, 2013) and 6-chloro-4-oxo-4H-chromene-3-carbaldehyde (Ishikawa, 2014). Halogen bonding between the formyl oxygen atom and the chlorine atom at the 8-position and type I halogen···halogen interaction between the chlorine atoms at 6-position are observed in 6,8-dichloro-4-oxochromene-3-carbaldehyde (Fig.3 (top)). On the other hand, a van der Waals contact between the formyl oxygen atom and the chlorine atom at 6-position is found in 6-chloro-4-oxo-4H-chromene-3-carbaldehyde (Fig.3 (middle)). As part of our interest in these types of chemical bonding, we herein report the crystal structure of a monochlorinated and monofluorinated 3-formylchromone derivative, 6-chloro-7-fluoro-4-oxo-4H-chromene-3-carbaldehyde. The objective of this study is to reveal the inductive effect of the vicinal electron-withdrawing substituent on the chlorine atom at 6-position and the interaction mode(s).
The mean deviation of the least-square planes for the non-hydrogen atoms is 0.0336 Å, and the largest deviations is 0.062 (2) Å for C4. These mean that these atoms are essentially coplanar (Fig.1).
In the crystal, the molecules are linked through stacking interaction between the translation-symmetry equivalenti molecules [centroid–centroid distance between the benzene and pyran rings of the 4H-chromene units = 3.958 (3) Å, interplanar distance 3.259 (3) Å, i: x, y, z + 1], and through C–H···O hydrogen bonds (see hydrogen bonding table).
A contact between the formyl oxygen atom and the chlorine atom at 6-position is not found in the title compound. Instead, unsymmetrical halogen···halogen interactions are formed between the chlorine and fluorine atoms [Cl1···F1 = 3.049 (3) Å, C5–Cl1···F1 = 148.10 (9)°, C6–F1···Cl1 = 162.06 (13)°] to give a meandering two-dimensional-network along the a axis, as shown in Fig.2 and Fig.3 (bottom). It is suggested that the electron-withdrawing substituent at 7-position should make the σ-hole of the chlorine atom at 6-position larger, and the electropositive region of the chlorine atom should contact the electronegative region of the fluorine atom (Hathwar et al., 2011). Symmetrical halogen···halogen interactions (F···F and Cl···Cl) are not observed in the title compound, which might support that the unsymmetrical Cl···F interaction is more favorable than the symmetrical ones.
Furthermore, short contacts between the formyl C10 and O3ii atoms [2.879 (3) Å, ii: –x + 1/2, –y + 1, z + 1/2] are observed. This interesting feature might be caused by strong dipole-dipole interaction between the formyl groups polarized by introduction of the chlorine and fluorine atoms into the chromone ring. These findings should be helpful to understand interaction of halogenated ligands with proteins, and are thus valuable for rational drug design.