organic compounds
H,1′H-[2,2′-biimidazol]-3-ium hydrogen tartrate hemihydrate
of 1aDepartment of Chemistry, Taiyuan Normal College, Taiyuan, Shanxi 030031, People's Republic of China
*Correspondence e-mail: xiaoli.gao@sohu.com
In the crystal of the title hydrated salt, C6H7N4+·C4H5O6−·0.5H2O, the biimidazole monocation, 1H,1′H-[2,2′-biimidazol]-3-ium, is hydrogen bonded, via N—H⋯O, O—H⋯O and O—H⋯N hydrogen bonds, to the hydrogen tartrate anion and the water molecule, which is located on a twofold rotation axis, forming sheets parallel to (001). The sheets are linked via C—H⋯O hydrogen bonds, forming a three-dimensional structure. There are also C=O⋯π interactions present [O⋯π distances are 3.00 (9) and 3.21 (7) Å], involving the carbonyl O atoms and the imidazolium ring, which may help to consolidate the structure. In the cation, the dihedral angle between the rings is 11.6 (2)°.
Keywords: crystal structure; biimidazole; imidazolium; tartrate; hydrogen bonding.
CCDC reference: 1031345
1. Related literature
For background to the use of 2,2′-biimidazoles in crystal engineering, see: Shankar et al. (2013); Gulbransen & Fitchett (2012); Tadokoro & Nakasuji (2000). For similar structures, see: Liu & Zhu (2010); Gao et al. (2009); Li & Yang (2006); Mori & Miyoshi (2004).
2. Experimental
2.1. Crystal data
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2.3. Refinement
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: pubCIF (Westrip, 2010).
Supporting information
CCDC reference: 1031345
10.1107/S160053681402371X/su5001sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681402371X/su5001Isup2.hkl
Supporting information file. DOI: 10.1107/S160053681402371X/su5001Isup3.cml
Diimidazole (1.0 mmol) and tartaric acid (1.0 mmol) were dissolved in water (15 ml) by adding 1.2 ml of 2M HCl while stirring. The solution was left to stand at room temperature and colourless crystals of the title compound were obtained after several weeks.
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: pubCIF (Westrip, 2010).Molecular structure and atom labelling of the title compound, with displacement ellipsoids drawn at the 30% probability level. Dashed line indicates hydrogen bonds [see Table 1 for details; symmetry codes: (i) x, y + 1, z; (ii) x + 3/2, y + 3/2, z + 2; (iii) x + 3/2, y + 1/2, z + 2]. Partial crystal packing of the title compound, with the hydrogen bonds (dashed lines) and C═O···π interactions (dashed solid lines) between neighbouring tapes. Cg1 is the centroid of the C4/C5/C6/N3/N4 imidazole ring. [Symmetry codes: (i) x + 3/2, y + 1/2, z + 2; (ii) - x, y, - z; (iii) x, y + 1, z; (iv) x + 3/2, y - 3/2, z + 2; (v) - x - 1, y, - z.] |
C4H5O6−·C6H7N4+·0.5H2O | F(000) = 612 |
Mr = 293.25 | Dx = 1.536 Mg m−3 |
Monoclinic, C2 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C 2y | Cell parameters from 2195 reflections |
a = 19.3211 (13) Å | θ = 3.5–25.0° |
b = 4.8198 (2) Å | µ = 0.13 mm−1 |
c = 16.1795 (10) Å | T = 296 K |
β = 122.694 (7)° | Plate, colourless |
V = 1267.99 (13) Å3 | 0.35 × 0.30 × 0.23 mm |
Z = 4 |
Bruker SMART diffractometer | 2292 independent reflections |
Radiation source: fine-focus sealed tube | 2100 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
Detector resolution: 16.0733 pixels mm-1 | θmax = 25.5°, θmin = 3.6° |
phi and ω scans | h = −23→10 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | k = −5→5 |
Tmin = 0.956, Tmax = 0.971 | l = −18→19 |
4238 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.099 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0364P)2 + 0.5619P] where P = (Fo2 + 2Fc2)/3 |
2292 reflections | (Δ/σ)max < 0.001 |
202 parameters | Δρmax = 0.16 e Å−3 |
1 restraint | Δρmin = −0.27 e Å−3 |
C4H5O6−·C6H7N4+·0.5H2O | V = 1267.99 (13) Å3 |
Mr = 293.25 | Z = 4 |
Monoclinic, C2 | Mo Kα radiation |
a = 19.3211 (13) Å | µ = 0.13 mm−1 |
b = 4.8198 (2) Å | T = 296 K |
c = 16.1795 (10) Å | 0.35 × 0.30 × 0.23 mm |
β = 122.694 (7)° |
Bruker SMART diffractometer | 2292 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | 2100 reflections with I > 2σ(I) |
Tmin = 0.956, Tmax = 0.971 | Rint = 0.030 |
4238 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 1 restraint |
wR(F2) = 0.099 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | Δρmax = 0.16 e Å−3 |
2292 reflections | Δρmin = −0.27 e Å−3 |
202 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The line _refine_ls_abs_structure_Flack -1.5 (15) has been removed. According to the comment in an absolute configuration has been assigned, obtained using x by least-squares refinement. There is too high standard uncertainty on x and no information available that the assigned value is confirmed by the diffraction measurements. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.12363 (19) | 0.3256 (7) | 0.54798 (19) | 0.0501 (8) | |
H1 | 0.0811 | 0.4221 | 0.4950 | 0.060* | |
C2 | 0.17427 (17) | 0.1439 (8) | 0.54276 (19) | 0.0465 (8) | |
H2 | 0.1729 | 0.0925 | 0.4865 | 0.056* | |
C3 | 0.20830 (14) | 0.1770 (6) | 0.69462 (16) | 0.0287 (6) | |
C4 | 0.25343 (14) | 0.1445 (5) | 0.80032 (16) | 0.0266 (5) | |
C5 | 0.33858 (17) | −0.0022 (6) | 0.95007 (19) | 0.0385 (7) | |
H5 | 0.3788 | −0.1057 | 1.0029 | 0.046* | |
C6 | 0.29783 (17) | 0.2162 (6) | 0.95549 (18) | 0.0380 (7) | |
H6 | 0.3044 | 0.2923 | 1.0121 | 0.046* | |
N1 | 0.14434 (14) | 0.3465 (5) | 0.64335 (15) | 0.0400 (6) | |
N2 | 0.22801 (13) | 0.0497 (5) | 0.63601 (15) | 0.0357 (5) | |
N3 | 0.24455 (13) | 0.3045 (5) | 0.86056 (14) | 0.0307 (5) | |
N4 | 0.31045 (13) | −0.0455 (5) | 0.85300 (15) | 0.0307 (5) | |
H2A | 0.2689 (17) | −0.079 (6) | 0.6544 (19) | 0.037* | |
H3A | 0.2032 (17) | 0.440 (6) | 0.8388 (18) | 0.037* | |
H4A | 0.3337 (16) | −0.172 (7) | 0.8333 (19) | 0.037* | |
C7 | 0.38284 (14) | 0.5315 (5) | 0.74083 (18) | 0.0295 (6) | |
C8 | 0.44290 (15) | 0.3252 (6) | 0.74053 (18) | 0.0308 (6) | |
C9 | 0.51381 (14) | 0.4868 (5) | 0.74572 (17) | 0.0288 (6) | |
H9 | 0.4916 | 0.6076 | 0.6881 | 0.035* | |
C10 | 0.57380 (15) | 0.2829 (6) | 0.74598 (17) | 0.0299 (6) | |
O1 | 0.37823 (11) | 0.5416 (4) | 0.81509 (13) | 0.0379 (5) | |
O2 | 0.34295 (11) | 0.6789 (4) | 0.66602 (12) | 0.0436 (5) | |
O3 | 0.47460 (11) | 0.1317 (4) | 0.81901 (13) | 0.0382 (5) | |
H3 | 0.4744 | 0.1836 | 0.8679 | 0.046* | |
O4 | 0.55700 (11) | 0.6495 (4) | 0.83171 (14) | 0.0402 (5) | |
O5 | 0.64334 (10) | 0.2498 (4) | 0.81780 (12) | 0.0353 (5) | |
O6 | 0.54328 (11) | 0.1477 (5) | 0.66429 (13) | 0.0475 (5) | |
H6A | 0.5803 | 0.0673 | 0.6635 | 0.057* | |
H4 | 0.5313 (19) | 0.807 (8) | 0.832 (2) | 0.057* | |
H8 | 0.4108 (19) | 0.231 (7) | 0.676 (2) | 0.057* | |
O7 | 0.5000 | 0.3371 (9) | 1.0000 | 0.0714 (10) | |
H7A | 0.4667 | 0.4934 | 0.9729 | 0.086* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0480 (17) | 0.063 (2) | 0.0286 (13) | 0.0215 (17) | 0.0139 (13) | 0.0062 (15) |
C2 | 0.0506 (17) | 0.0589 (19) | 0.0278 (13) | 0.0134 (17) | 0.0196 (12) | 0.0000 (14) |
C3 | 0.0276 (12) | 0.0321 (13) | 0.0280 (12) | 0.0028 (12) | 0.0161 (10) | 0.0002 (12) |
C4 | 0.0262 (12) | 0.0257 (12) | 0.0282 (11) | 0.0020 (11) | 0.0149 (10) | 0.0017 (11) |
C5 | 0.0380 (14) | 0.0426 (16) | 0.0297 (13) | 0.0072 (13) | 0.0149 (11) | 0.0046 (12) |
C6 | 0.0405 (15) | 0.0437 (17) | 0.0273 (12) | 0.0023 (13) | 0.0168 (12) | −0.0015 (12) |
N1 | 0.0373 (12) | 0.0501 (14) | 0.0286 (11) | 0.0179 (12) | 0.0152 (10) | 0.0038 (11) |
N2 | 0.0348 (12) | 0.0400 (13) | 0.0305 (11) | 0.0110 (11) | 0.0165 (10) | −0.0011 (10) |
N3 | 0.0327 (11) | 0.0322 (12) | 0.0293 (11) | 0.0050 (10) | 0.0180 (9) | 0.0005 (9) |
N4 | 0.0318 (11) | 0.0310 (12) | 0.0295 (11) | 0.0067 (10) | 0.0167 (9) | 0.0033 (9) |
C7 | 0.0245 (12) | 0.0283 (13) | 0.0354 (13) | −0.0009 (11) | 0.0160 (10) | −0.0059 (11) |
C8 | 0.0300 (13) | 0.0297 (14) | 0.0312 (12) | 0.0041 (11) | 0.0155 (11) | −0.0018 (11) |
C9 | 0.0299 (12) | 0.0254 (13) | 0.0286 (12) | 0.0069 (11) | 0.0141 (10) | 0.0028 (11) |
C10 | 0.0322 (13) | 0.0296 (13) | 0.0318 (13) | −0.0007 (11) | 0.0198 (12) | −0.0003 (11) |
O1 | 0.0442 (11) | 0.0357 (10) | 0.0423 (10) | 0.0090 (9) | 0.0290 (9) | 0.0043 (8) |
O2 | 0.0412 (11) | 0.0545 (13) | 0.0332 (9) | 0.0233 (11) | 0.0190 (8) | 0.0074 (10) |
O3 | 0.0501 (11) | 0.0284 (10) | 0.0445 (10) | 0.0103 (9) | 0.0311 (9) | 0.0066 (9) |
O4 | 0.0355 (10) | 0.0283 (9) | 0.0462 (10) | 0.0036 (9) | 0.0151 (8) | −0.0117 (9) |
O5 | 0.0268 (9) | 0.0365 (10) | 0.0347 (9) | 0.0052 (8) | 0.0114 (8) | −0.0045 (8) |
O6 | 0.0349 (10) | 0.0641 (14) | 0.0352 (9) | 0.0139 (10) | 0.0135 (8) | −0.0140 (10) |
O7 | 0.064 (2) | 0.078 (3) | 0.061 (2) | 0.000 | 0.0266 (18) | 0.000 |
C1—C2 | 1.350 (4) | N4—H4A | 0.91 (3) |
C1—N1 | 1.373 (3) | C7—O2 | 1.247 (3) |
C1—H1 | 0.9300 | C7—O1 | 1.253 (3) |
C2—N2 | 1.367 (3) | C7—C8 | 1.530 (4) |
C2—H2 | 0.9300 | C8—O3 | 1.421 (3) |
C3—N1 | 1.333 (3) | C8—C9 | 1.538 (4) |
C3—N2 | 1.346 (3) | C8—H8 | 0.99 (3) |
C3—C4 | 1.449 (3) | C9—O4 | 1.412 (3) |
C4—N3 | 1.325 (3) | C9—C10 | 1.518 (3) |
C4—N4 | 1.328 (3) | C9—H9 | 0.9800 |
C5—C6 | 1.346 (4) | C10—O5 | 1.222 (3) |
C5—N4 | 1.372 (3) | C10—O6 | 1.295 (3) |
C5—H5 | 0.9300 | O3—H3 | 0.8309 |
C6—N3 | 1.375 (3) | O4—H4 | 0.91 (4) |
C6—H6 | 0.9300 | O6—H6A | 0.8200 |
N2—H2A | 0.92 (3) | O7—H7A | 0.9324 |
N3—H3A | 0.94 (3) | ||
C2—C1—N1 | 109.7 (2) | C4—N4—C5 | 107.9 (2) |
C2—C1—H1 | 125.2 | C4—N4—H4A | 129.2 (17) |
N1—C1—H1 | 125.2 | C5—N4—H4A | 122.4 (17) |
C1—C2—N2 | 106.9 (2) | O2—C7—O1 | 125.6 (2) |
C1—C2—H2 | 126.6 | O2—C7—C8 | 116.0 (2) |
N2—C2—H2 | 126.6 | O1—C7—C8 | 118.4 (2) |
N1—C3—N2 | 111.2 (2) | O3—C8—C7 | 112.7 (2) |
N1—C3—C4 | 124.5 (2) | O3—C8—C9 | 110.02 (19) |
N2—C3—C4 | 124.3 (2) | C7—C8—C9 | 109.0 (2) |
N3—C4—N4 | 108.8 (2) | O3—C8—H8 | 111 (2) |
N3—C4—C3 | 124.8 (2) | C7—C8—H8 | 105.0 (19) |
N4—C4—C3 | 126.4 (2) | C9—C8—H8 | 108.7 (18) |
C6—C5—N4 | 108.0 (2) | O4—C9—C10 | 108.24 (19) |
C6—C5—H5 | 126.0 | O4—C9—C8 | 111.7 (2) |
N4—C5—H5 | 126.0 | C10—C9—C8 | 109.19 (19) |
C5—C6—N3 | 106.3 (2) | O4—C9—H9 | 109.2 |
C5—C6—H6 | 126.8 | C10—C9—H9 | 109.2 |
N3—C6—H6 | 126.8 | C8—C9—H9 | 109.2 |
C3—N1—C1 | 105.3 (2) | O5—C10—O6 | 124.4 (2) |
C3—N2—C2 | 106.9 (2) | O5—C10—C9 | 122.2 (2) |
C3—N2—H2A | 126.9 (17) | O6—C10—C9 | 113.4 (2) |
C2—N2—H2A | 126.1 (17) | C8—O3—H3 | 115.5 |
C4—N3—C6 | 109.0 (2) | C9—O4—H4 | 116 (2) |
C4—N3—H3A | 123.3 (16) | C10—O6—H6A | 109.5 |
C6—N3—H3A | 127.3 (16) | ||
N1—C1—C2—N2 | −0.3 (4) | N3—C4—N4—C5 | −0.2 (3) |
N1—C3—C4—N3 | −9.7 (4) | C3—C4—N4—C5 | 179.2 (3) |
N2—C3—C4—N3 | 166.9 (3) | C6—C5—N4—C4 | 0.1 (3) |
N1—C3—C4—N4 | 170.9 (3) | O2—C7—C8—O3 | −169.2 (2) |
N2—C3—C4—N4 | −12.4 (4) | O1—C7—C8—O3 | 11.6 (3) |
N4—C5—C6—N3 | 0.1 (3) | O2—C7—C8—C9 | 68.4 (3) |
N2—C3—N1—C1 | −0.6 (3) | O1—C7—C8—C9 | −110.8 (3) |
C4—C3—N1—C1 | 176.5 (3) | O3—C8—C9—O4 | −64.0 (2) |
C2—C1—N1—C3 | 0.5 (4) | C7—C8—C9—O4 | 60.0 (2) |
N1—C3—N2—C2 | 0.4 (3) | O3—C8—C9—C10 | 55.7 (3) |
C4—C3—N2—C2 | −176.7 (3) | C7—C8—C9—C10 | 179.7 (2) |
C1—C2—N2—C3 | 0.0 (4) | O4—C9—C10—O5 | 9.8 (3) |
N4—C4—N3—C6 | 0.3 (3) | C8—C9—C10—O5 | −112.0 (3) |
C3—C4—N3—C6 | −179.1 (3) | O4—C9—C10—O6 | −171.4 (2) |
C5—C6—N3—C4 | −0.3 (3) | C8—C9—C10—O6 | 66.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O2i | 0.92 (3) | 1.78 (3) | 2.683 (3) | 169 (3) |
N3—H3A···O5ii | 0.94 (3) | 1.81 (3) | 2.729 (3) | 167 (3) |
N4—H4A···O1i | 0.91 (3) | 1.73 (3) | 2.630 (3) | 167 (3) |
O3—H3···O7 | 0.83 | 2.05 | 2.871 (2) | 168 |
O4—H4···O3iii | 0.91 (4) | 1.86 (4) | 2.761 (3) | 175 (3) |
O6—H6A···N1iv | 0.82 | 1.79 | 2.598 (3) | 168 |
O7—H7A···O1 | 0.93 | 2.19 | 2.802 (2) | 123 |
C2—H2···O2v | 0.93 | 2.35 | 3.215 (3) | 154 |
C5—H5···O4vi | 0.93 | 2.55 | 3.415 (3) | 155 |
C6—H6···O5vii | 0.93 | 2.37 | 3.205 (3) | 149 |
Symmetry codes: (i) x, y−1, z; (ii) x−1/2, y+1/2, z; (iii) x, y+1, z; (iv) x+1/2, y−1/2, z; (v) −x+1/2, y−1/2, −z+1; (vi) −x+1, y−1, −z+2; (vii) −x+1, y, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O2i | 0.92 (3) | 1.78 (3) | 2.683 (3) | 169 (3) |
N3—H3A···O5ii | 0.94 (3) | 1.81 (3) | 2.729 (3) | 167 (3) |
N4—H4A···O1i | 0.91 (3) | 1.73 (3) | 2.630 (3) | 167 (3) |
O3—H3···O7 | 0.83 | 2.05 | 2.871 (2) | 168 |
O4—H4···O3iii | 0.91 (4) | 1.86 (4) | 2.761 (3) | 175 (3) |
O6—H6A···N1iv | 0.82 | 1.79 | 2.598 (3) | 168 |
O7—H7A···O1 | 0.93 | 2.19 | 2.802 (2) | 123 |
C2—H2···O2v | 0.93 | 2.35 | 3.215 (3) | 154 |
C5—H5···O4vi | 0.93 | 2.55 | 3.415 (3) | 155 |
C6—H6···O5vii | 0.93 | 2.37 | 3.205 (3) | 149 |
Symmetry codes: (i) x, y−1, z; (ii) x−1/2, y+1/2, z; (iii) x, y+1, z; (iv) x+1/2, y−1/2, z; (v) −x+1/2, y−1/2, −z+1; (vi) −x+1, y−1, −z+2; (vii) −x+1, y, −z+2. |
Acknowledgements
We are grateful to the National Natural Science Foundation of China (grant No. 51174275) for financial support.
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Supramolecular assemblies built by means of hydrogen bonding interactions have provided numerous materials with very attractive properties (Gulbransen & Fitchett, 2012; Shankar et al., 2013). 2,2'-Biimidazole, H2biim, is not only a proton donor, but also a proton acceptor, so that it possesses five possible forms, viz. diprotonated (dication, H4biim2+), monoprotonated (monocation, H3biim+), dideprotonated (dianion, biim2-), monodeprotonated (monoanion, Hbiim-) (Tadokoro & Nakasuji, 2000; Mori & Miyoshi, 2004). Therefore, H2biim appears as an interesting molecular building block for the design of new multidimensional supramolecular arrangements, owing to its capacity to act as a donor or acceptor in the formation of hydrogen bonds (Li & Yang, 2006; Gao et al., 2009; Liu & Zhu, 2010).
The fundamental asymmetric unit of compound (I), contains two monoprotonated biimidazolium cations, two tatrate anions and one water molecular, in which the two imidazole rings of biimidazole are little tortile with the dihedral number is 11.5°. Strong N—H···O and O—H···N hydrogen bonds link neighbour tatrate and biimidazolium moities, then O—H···O hydrogen bonds between water molecular and tatrates link them to form two different zigzag layers as shown in Fig. 1. Two groups of these parallel layers on a twofold rotation axis and invension centre forming a zigzag conformation, then further assemble to tapes via weak C=O···π (centroid of imidazolium ring) interaction arranged alternatively in three-dimensional structure as described in Table 1 and shown in Fig. 2.