organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890
Volume 71| Part 2| February 2015| Pages o127-o128

Crystal structure of rac-3,9-bis­­(2,6-di­fluoro­phen­yl)-2,4,8,10-tetra­oxa­spiro[5.5]undeca­ne

aAdvanced Catalysis and Green Manufacturing Collaborative Innovation Center, Changzhou University, Changzhou 213164, Jiangsu, People's Republic of China, and bKey Laboratory of Fine Chemical Engineering, Changzhou University, Changzhou, 213164, Jiangsu, People's Republic of China
*Correspondence e-mail: cl861103@163.com

Edited by H. Stoeckli-Evans, University of Neuchâtel, Switzerland (Received 17 January 2015; accepted 20 January 2015; online 24 January 2015)

The title compound, C19H16F4O4, was prepared by the condensation reaction of 2,6-di­fluoro­benzaldehyde and penta­erythritol. The whole mol­ecule is generated by twofold rotational symmetry. The two six-membered O-heterocycles adopt chair conformations through a shared spiro-carbon atom that is located on the crystallographic twofold rotation axis. In this conformation, the two aromatic rings are located at the equatorial positions of the O-heterocycles. The conformation of this doubly substituted tetra­oxa­spiro system is chiral. In the crystal, mol­ecules are linked by C—H⋯O hydrogen bonds, forming layers parallel to (100). These layers are linked by C—H⋯F hydrogen bonds into a three-dimensional structure.

1. Related literature

For the use of tetra­oxa­spiro­[5.5]undeca­nes, see: Cismaş et al. (2005[Cismaş, C., Terec, A., Mager, S. & Grosu, I. (2005). Curr. Org. Chem. 9, 1287-1314.]); Sondhi et al. (2009[Sondhi, S.-M., Dinodia Monica Jain, S. & Kumar, A. (2009). Indian J. Chem. Sect. B. 48, 1128-1136.]); Sauriat-Dorizon et al. (2003[Sauriat-Dorizon, H., Maris, T., Wuest, J. D. & Enright, G. D. (2003). J. Org. Chem. 68, 240-246.]). For chiral conformations of tetra­oxa­spiro­[5.5]undeca­nes, see: Mihiş et al. (2008[Mihiş, A., Condamine, E., Bogdan, E., Terec, A., Kurtán, T. & Grosu, I. (2008). Molecules, 13, 2848-2858.]). For opposite enanti­omers of tetra­oxa­spiro­[5.5]undeca­nes, see: Sun et al. (2010[Sun, X.-Q., Yu, S.-L., Li, Z.-Y. & Yang, Y. (2010). J. Mol. Struct. 973, 152-156.]).

[Scheme 1]

2. Experimental

2.1. Crystal data

  • C19H16F4O4

  • Mr = 384.32

  • Monoclinic, C 2/c

  • a = 28.960 (5) Å

  • b = 5.5627 (11) Å

  • c = 11.205 (2) Å

  • β = 95.442 (4)°

  • V = 1797.0 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.13 mm−1

  • T = 296 K

  • 0.20 × 0.18 × 0.15 mm

2.2. Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009[Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]) Tmin = 0.975, Tmax = 0.981

  • 4856 measured reflections

  • 1671 independent reflections

  • 1444 reflections with I > 2σ(I)

  • Rint = 0.031

2.3. Refinement

  • R[F2 > 2σ(F2)] = 0.050

  • wR(F2) = 0.148

  • S = 1.01

  • 1671 reflections

  • 124 parameters

  • H-atom parameters constrained

  • Δρmax = 0.26 e Å−3

  • Δρmin = −0.34 e Å−3

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
C8—H8A⋯O2i 0.97 2.57 3.334 (2) 136
C10—H10B⋯O1ii 0.97 2.56 3.410 (2) 146
C2—H2⋯F1iii 0.93 2.56 3.351 (3) 143
Symmetry codes: (i) [x, -y+2, z+{\script{1\over 2}}]; (ii) [-x+1, y+1, -z+{\script{3\over 2}}]; (iii) [-x+{\script{3\over 2}}, y-{\script{1\over 2}}, -z+{\script{3\over 2}}].

Data collection: APEX2 (Bruker, 2009[Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]); cell refinement: SAINT (Bruker, 2009[Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2015[Sheldrick, G. M. (2015). Acta Cryst. C71, 3-8.]); molecular graphics: SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); software used to prepare material for publication: SHELXTL.

Supporting information


Comment top

Tetra­oxa­spiro­[5.5]undecanes derived from penta­erythritol are a class of the oxo-spiro­cyclic compounds. 3,9-disubstituted spiro­cyclic compounds have inter­esting stereochemical properties like axial chirality, and play important roles in the fields like, pesticide chemistry (Cismaş et al., 2005), medicinal chemistry (Sondhi et al., 2009), and materials chemistry (Sauriat-Dorizon et al., 2003). Due to their stereochemical properties (Mihiş et al., 2008), these compounds in the solid state always adopt chiral conformations, and are built from opposite enanti­omers (Sun et al., 2010), as shown below.

In the title compound, (I), the molecule is consisted of the identical two components though a shared spiro-C9 atom with a crystallographic two-fold symmetry axis (Fig. 1). The two six-membered heterocycles both adopt chair conformation. And the two aromatic residues both are located in the equatorial positions (atom C7) of the tetra-oxa­spiro skeleton, through the staggered structure with the six-membered heterocycles, with the torsion angle O1—C7—C6—C1 of -112.5 (2) °.

The phenyl rings, as groups are much larger than hydrogen atoms, are located at the equatorial positions (atom C7) of six-membered O-heterocycles, while the H7 atoms are placed at the axial positions. In the oxo-spiro­cyclic skeleton, the distance between atoms O1 and O1A is longer than the distance between atoms O2 and O2A, with difference in value of ca. 1.115 Å. The molecule looks like a two-bladed propeller with the dihedral angle between the mean planes of (C1–C6) and (C1A–C6A) equal to 82.9 (5) °. Two opposite enanti­omers, with equal numbers, are present in the crystal (Fig. 2) with a centrosymmetric space group (C2/c).

The packing of molecules of (I), is determined by the presence of numerous weak inter­molecular inter­actions (Table 1). The C10—H10B···O1 inter­actions link the same molecules with the identical configurations R or S, respectively, into parallel chains along the b axis, furthermore, the C8—H8A···O2 inter­actions link the R and S chains alternatively along the c axis into a two-dimensional layered reticulate structure (Fig. 3) in bc plane. The donors and acceptors of the C—H···O inter­actions are barely constituted by the C and O atoms from the oxo-spiro­cyclic skeleton.

In crystalline states, those achiral layered structures are stacked into a three-dimensional structure by weak C—H···F inter­molecular inter­actions between the same enanti­omers (Fig. 4 and Table 1). It is worth mentioning that the C—H···F inter­actions constitute left/right-handed homochiral helical chains along the b axis (Fig. 4), with left-handed helical chains of the molecules of R configuration (Fig. 4a), and right-handed helical chains of S conformation molecules (Fig. 4c). And, we can clearly see that each helix in the homochiral chains consists of two molecules, with a pitch of 5.5627 (11) A (Fig. 4a). The two kinds of helical chains are arranged parallel to each other in the vertical direction of bc plan, with the same-handed chains along the a axis, and the different-handed chains along the c axis alternatively (Fig. 4b).

Experimental top

A catalytic qu­antity (0.04, 0.2 mmol) of p-toluene­sulfonic acid was added to a solution of 2,6-di­fluoro­benzaldehyde (1.14 g, 8 mmol) and penta­erythritol (0.52 mg, 3.8 mmol) in toluene (40 ml), and this mixture was then heated under reflux for 4 h in a flask equipped with a condenser and a water trap. The solution was washed with the sodium carbonate solution (10 %). Then, the organic layer was separated and the solvent was evaporated under the vacuum conditions and the residue was dried. The resulting solid product, (yield: 80%; m.p.: 509.5 - 510.2 K), was recrystallized from ethanol. The colourless crystals suitable for single-crystal X-ray diffraction, were also grown from ethanol. 1H NMR (300 MHz, DMSO-D6): δ 3.68–3.81(m, 4H), 3.94–3.98 (d, 2H), 4.66–4.69 (d, 2H), 5.89 (s, 2H), 7.11–7.17 (t, 4H), 7.46–7.53 (m, 2H).

Refinement top

All the H atoms were placed in calculated positions and allowed to ride on their parent atoms: C—H = 0.93 - 0.98 Å with Uiso(H) = 1.2Ueq(C).

Related literature top

For the use of tetraoxaspiro[5.5]undecanes, see: Cismaş et al. (2005); Sondhi et al. (2009); Sauriat-Dorizon et al. (2003). For chiral conformations of tetraoxaspiro[5.5]undecanes, see: Mihiş et al. (2008). For opposite enantiomers of tetraoxaspiro[5.5]undecanes, see: Sun et al. (2010).

Computing details top

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2015); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. The molecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level.
[Figure 2] Fig. 2. The crystal structure of enantiomers of the title compound, showing the two opposite enantiomers.
[Figure 3] Fig. 3. Part of the layered crystal structure of the title compound, showing the weak C—H···O interactions between the molecules. The same enantiomers are linked along the b axis, and the different enantiomers are linked alternatively along the c axis.
[Figure 4] Fig. 4. A view of a part of the crystal structure of the title compound: (a) Left-handed helical chains of molecules with R configuration connected via the weak C—H···F interactions (represented with the orange dashed lines) along the b axis; (b) the weak C—H···F interactions of the left-handed helical chains (indicated as the orange dashed line in the orange oval rings), the weak C—H···F interactions of the right-handed helical chains (represented as the green dashed line in the green oval rings); and the weak C—H···O interactions (represented as the red dashed lines); (c) Right-handed helical chains of the molecules with S configuration connected via the weak C—H···F interactions (represented with the green dashed lines) along the b axis.
3,9-Bis(2,6-difluorophenyl)-2,4,8,10-tetraoxaspiro[5.5]undecane top
Crystal data top
C19H16F4O4F(000) = 792
Mr = 384.32Dx = 1.421 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2905 reflections
a = 28.960 (5) Åθ = 2.8–29.7°
b = 5.5627 (11) ŵ = 0.13 mm1
c = 11.205 (2) ÅT = 296 K
β = 95.442 (4)°Block, colourless
V = 1797.0 (6) Å30.20 × 0.18 × 0.15 mm
Z = 4
Data collection top
Bruker APEXII CCD area-detector
diffractometer
1671 independent reflections
Radiation source: fine-focus sealed tube1444 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
phi and ω scansθmax = 25.5°, θmin = 1.4°
Absorption correction: multi-scan
(SADABS; Bruker, 2009)
h = 3434
Tmin = 0.975, Tmax = 0.981k = 66
4856 measured reflectionsl = 1311
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H-atom parameters constrained
wR(F2) = 0.148 w = 1/[σ2(Fo2) + (0.0997P)2 + 0.5847P]
where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
1671 reflectionsΔρmax = 0.26 e Å3
124 parametersΔρmin = 0.34 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.057 (5)
Crystal data top
C19H16F4O4V = 1797.0 (6) Å3
Mr = 384.32Z = 4
Monoclinic, C2/cMo Kα radiation
a = 28.960 (5) ŵ = 0.13 mm1
b = 5.5627 (11) ÅT = 296 K
c = 11.205 (2) Å0.20 × 0.18 × 0.15 mm
β = 95.442 (4)°
Data collection top
Bruker APEXII CCD area-detector
diffractometer
1671 independent reflections
Absorption correction: multi-scan
(SADABS; Bruker, 2009)
1444 reflections with I > 2σ(I)
Tmin = 0.975, Tmax = 0.981Rint = 0.031
4856 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0500 restraints
wR(F2) = 0.148H-atom parameters constrained
S = 1.01Δρmax = 0.26 e Å3
1671 reflectionsΔρmin = 0.34 e Å3
124 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C90.50001.0314 (3)0.75000.0444 (5)
O20.56492 (4)1.05258 (19)0.62616 (10)0.0529 (4)
O10.56527 (4)0.75364 (18)0.77199 (9)0.0478 (4)
F20.57010 (3)0.5988 (2)0.51818 (9)0.0650 (4)
C80.53125 (5)0.8761 (3)0.83549 (13)0.0469 (4)
H8A0.54680.97630.89780.056*
H8B0.51260.75890.87340.056*
C70.59217 (6)0.9188 (3)0.71277 (14)0.0516 (4)
H70.60821.02810.77160.062*
C100.46902 (7)1.1913 (3)0.81939 (15)0.0569 (5)
H10A0.48801.27830.88100.068*
H10B0.45351.30820.76520.068*
C60.62720 (6)0.7791 (3)0.65080 (16)0.0587 (5)
C50.61516 (6)0.6237 (3)0.55644 (18)0.0614 (5)
C40.64657 (9)0.4916 (5)0.4995 (3)0.0962 (8)
H40.63690.38900.43650.115*
C10.67413 (8)0.7922 (6)0.6860 (3)0.0917 (8)
F10.68770 (5)0.9389 (5)0.78045 (18)0.1351 (8)
C20.70735 (8)0.6647 (9)0.6309 (4)0.1288 (13)
H20.73870.68060.65630.155*
C30.69284 (12)0.5162 (8)0.5389 (4)0.1302 (13)
H30.71470.42870.50150.156*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C90.0647 (13)0.0304 (9)0.0386 (10)0.0000.0074 (9)0.000
O20.0676 (8)0.0444 (6)0.0482 (7)0.0015 (5)0.0131 (5)0.0078 (5)
O10.0523 (6)0.0447 (6)0.0457 (6)0.0014 (4)0.0011 (4)0.0065 (4)
F20.0611 (7)0.0655 (7)0.0669 (7)0.0013 (4)0.0020 (5)0.0138 (5)
C80.0595 (9)0.0458 (8)0.0350 (7)0.0063 (6)0.0023 (6)0.0012 (6)
C70.0543 (9)0.0527 (9)0.0464 (8)0.0136 (7)0.0020 (7)0.0004 (6)
C100.0834 (12)0.0336 (8)0.0560 (10)0.0014 (7)0.0177 (8)0.0043 (6)
C60.0482 (9)0.0680 (11)0.0594 (10)0.0062 (7)0.0029 (7)0.0097 (8)
C50.0591 (10)0.0624 (11)0.0640 (11)0.0034 (8)0.0114 (8)0.0034 (8)
C40.0832 (15)0.1023 (18)0.1070 (19)0.0196 (14)0.0290 (14)0.0103 (16)
C10.0510 (11)0.124 (2)0.0972 (17)0.0138 (12)0.0083 (10)0.0036 (15)
F10.0684 (9)0.195 (2)0.1355 (14)0.0375 (11)0.0249 (9)0.0258 (13)
C20.0455 (12)0.183 (4)0.158 (3)0.0131 (17)0.0088 (15)0.019 (3)
C30.0830 (19)0.149 (3)0.164 (3)0.038 (2)0.042 (2)0.001 (3)
Geometric parameters (Å, º) top
C9—C8i1.5226 (19)C10—O2i1.4309 (19)
C9—C81.5227 (18)C10—H10A0.9700
C9—C101.5277 (19)C10—H10B0.9700
C9—C10i1.5277 (19)C6—C11.381 (3)
O2—C71.405 (2)C6—C51.384 (3)
O2—C10i1.4309 (19)C5—C41.373 (3)
O1—C71.4106 (18)C4—C31.377 (5)
O1—C81.4400 (18)C4—H40.9300
F2—C51.342 (2)C1—F11.364 (3)
C8—H8A0.9700C1—C21.386 (5)
C8—H8B0.9700C2—C31.356 (6)
C7—C61.500 (2)C2—H20.9300
C7—H70.9800C3—H30.9300
C8i—C9—C8110.87 (16)C9—C10—H10A109.4
C8i—C9—C10107.93 (9)O2i—C10—H10B109.4
C8—C9—C10110.67 (9)C9—C10—H10B109.4
C8i—C9—C10i110.67 (9)H10A—C10—H10B108.0
C8—C9—C10i107.93 (9)C1—C6—C5114.9 (2)
C10—C9—C10i108.76 (16)C1—C6—C7122.08 (19)
C7—O2—C10i110.78 (12)C5—C6—C7123.01 (15)
C7—O1—C8111.00 (11)F2—C5—C4117.6 (2)
O1—C8—C9110.56 (10)F2—C5—C6118.38 (15)
O1—C8—H8A109.5C4—C5—C6124.0 (2)
C9—C8—H8A109.5C5—C4—C3117.7 (3)
O1—C8—H8B109.5C5—C4—H4121.1
C9—C8—H8B109.5C3—C4—H4121.1
H8A—C8—H8B108.1F1—C1—C6117.2 (2)
O2—C7—O1111.78 (12)F1—C1—C2119.4 (2)
O2—C7—C6108.36 (13)C6—C1—C2123.5 (3)
O1—C7—C6107.94 (13)C3—C2—C1118.2 (2)
O2—C7—H7109.6C3—C2—H2120.9
O1—C7—H7109.6C1—C2—H2120.9
C6—C7—H7109.6C2—C3—C4121.8 (3)
O2i—C10—C9111.29 (12)C2—C3—H3119.1
O2i—C10—H10A109.4C4—C3—H3119.1
C7—O1—C8—C957.50 (15)C1—C6—C5—F2179.13 (19)
C8i—C9—C8—O169.20 (9)C7—C6—C5—F20.6 (3)
C10—C9—C8—O1171.06 (11)C1—C6—C5—C40.5 (3)
C10i—C9—C8—O152.16 (15)C7—C6—C5—C4179.1 (2)
C10i—O2—C7—O161.60 (16)F2—C5—C4—C3179.8 (3)
C10i—O2—C7—C6179.58 (12)C6—C5—C4—C30.1 (4)
C8—O1—C7—O261.92 (15)C5—C6—C1—F1178.6 (2)
C8—O1—C7—C6179.00 (11)C7—C6—C1—F10.0 (3)
C8i—C9—C10—O2i52.40 (16)C5—C6—C1—C21.2 (4)
C8—C9—C10—O2i69.09 (16)C7—C6—C1—C2179.8 (3)
C10i—C9—C10—O2i172.51 (17)F1—C1—C2—C3178.6 (4)
O2—C7—C6—C1126.2 (2)C6—C1—C2—C31.2 (5)
O1—C7—C6—C1112.5 (2)C1—C2—C3—C40.5 (6)
O2—C7—C6—C555.3 (2)C5—C4—C3—C20.2 (6)
O1—C7—C6—C565.9 (2)
Symmetry code: (i) x+1, y, z+3/2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C8—H8A···O2ii0.972.573.334 (2)136
C10—H10B···O1iii0.972.563.410 (2)146
C2—H2···F1iv0.932.563.351 (3)143
Symmetry codes: (ii) x, y+2, z+1/2; (iii) x+1, y+1, z+3/2; (iv) x+3/2, y1/2, z+3/2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C8—H8A···O2i0.972.573.334 (2)136
C10—H10B···O1ii0.972.563.410 (2)146
C2—H2···F1iii0.932.563.351 (3)143
Symmetry codes: (i) x, y+2, z+1/2; (ii) x+1, y+1, z+3/2; (iii) x+3/2, y1/2, z+3/2.
 

Acknowledgements

The authors thank the Advanced Catalysis and Green Manufacturing Collaborative Innovation Center of Changzhou University, the NSFC (21002009), the Major Program for Natural Science Research of Jiangsu Colleges and Universities (12 K J A150002, 14 K J A150002), Jiangsu Key Laboratory of Advanced Catalytic Materials and Technology (BM2012110), the PAPD of Jiangsu Higher Education Institutions and the Qing-Lan Project of Jiangsu Province for financial support.

References

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Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890
Volume 71| Part 2| February 2015| Pages o127-o128
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