organic compounds
α-hydroxy-5α,8β(H)-eudesm-7(11)-en-8,12-olide monohydrate
of 4aXi'an Botanical Garden, Institute of Botany of Shaanxi Province, Xi'an 710061, People's Republic of China, and bShaanxi Province Academy of Sciences, Xi'an 710061, People's Republic of China
*Correspondence e-mail: sxw@ms.xab.ac.cn
The title compound, C15H22O3·H2O, is a natural producr isolated from Chloranthus japonicus, which is a eudesmane sesquiterpenoid. The two trans-fused six-membered rings have chair confomations. In the crystal, O—H⋯O hydrogen bonds link the components into corrugated layers parallel to the bc plane. There are C—H⋯O interactions present within and between the layers.
CCDC reference: 1405865
1. Related literature
For the products isolated from the genus Chloranthus, see: Xiao et al. (2010); Sun et al. (2012). For the of the related compound 6β-hydroxyeremophil-7(11)-en-8β,12-olide, see: Su et al. (2011).
2. Experimental
2.1. Crystal data
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2.3. Refinement
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Data collection: SMART (Bruker, 2002); cell SAINT (Bruker, 2002); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL; software used to prepare material for publication: ORTEP (Johnson & Burnett, 1996).
Supporting information
CCDC reference: 1405865
10.1107/S2056989015011251/cv5488sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S2056989015011251/cv5488Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989015011251/cv5488Isup4.cdx
Chloranthus japonicus (Chloranthaceae,"yin-xian-cao"in chinese) is mainly distributed in the east of Asia and traditionally used as Chinese herbal medicine in the treatment of fractures, carbuncles, trauma, and rheumatism. In our current phytochemical investigation, the title compound - an eudesmane sesquiterpenoid, was isolated from the whole plant of C. japonicus for the first time.The compound was identified by NMR spectroscopic data, which were also elucidated by comparing with the literature data (Xiao et al., 2010). Herein, we report its crystal structure.
The main molecule of the title compound consists of a fused three-ring system (Fig.1). The two methyl groups attached to C4 and C10 and the H atom at C8 are all in the axial position and assigned β-configuration, whereas, the hydroxy group at C4 site has α-orientation.
In the crystal, intermolecular O—H···O hydrogen bonds (Table 1, Fig. 2) link all moeties into corrugated layers parallel to bc plane, and weak C—H···O interactions (Table 1) consolidate further the crystal packing.
The title compound was isolated from the whole plant of C. japonicus following the known procedure (Xiao et al., 2010).
Data collection: SMART (Bruker, 2002); cell
SAINT (Bruker, 2002); data reduction: SAINT (Bruker, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: ORTEP (Johnson & Burnett, 1996).Fig. 1. Molecular structure of the title compound showing the atomic numbering and 40% probability displacement ellipsoids. | |
Fig. 2. A portion of the crystal packing showing O—H···O hydrogen bonds as dashed lines. |
C15H22O3·H2O | F(000) = 292 |
Mr = 268.34 | Dx = 1.180 Mg m−3 |
Monoclinic, P21 | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: P 2yb | Cell parameters from 2390 reflections |
a = 10.2495 (2) Å | θ = 4.3–66.9° |
b = 7.1061 (1) Å | µ = 0.68 mm−1 |
c = 10.5275 (2) Å | T = 298 K |
β = 100.026 (1)° | Block, colourless |
V = 755.05 (2) Å3 | 0.40 × 0.40 × 0.30 mm |
Z = 2 |
Bruker SMART CCD area-detector diffractometer | 1339 independent reflections |
Radiation source: fine-focus sealed tube | 1303 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
phi and ω scans | θmax = 64.0°, θmin = 4.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | h = −11→11 |
Tmin = 0.772, Tmax = 0.821 | k = −6→8 |
3081 measured reflections | l = −11→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.130 | H-atom parameters constrained |
S = 1.18 | w = 1/[σ2(Fo2) + (0.092P)2 + 0.043P] where P = (Fo2 + 2Fc2)/3 |
1339 reflections | (Δ/σ)max < 0.001 |
174 parameters | Δρmax = 0.22 e Å−3 |
1 restraint | Δρmin = −0.34 e Å−3 |
C15H22O3·H2O | V = 755.05 (2) Å3 |
Mr = 268.34 | Z = 2 |
Monoclinic, P21 | Cu Kα radiation |
a = 10.2495 (2) Å | µ = 0.68 mm−1 |
b = 7.1061 (1) Å | T = 298 K |
c = 10.5275 (2) Å | 0.40 × 0.40 × 0.30 mm |
β = 100.026 (1)° |
Bruker SMART CCD area-detector diffractometer | 1339 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | 1303 reflections with I > 2σ(I) |
Tmin = 0.772, Tmax = 0.821 | Rint = 0.018 |
3081 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 1 restraint |
wR(F2) = 0.130 | H-atom parameters constrained |
S = 1.18 | Δρmax = 0.22 e Å−3 |
1339 reflections | Δρmin = −0.34 e Å−3 |
174 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.0506 (3) | −0.0853 (6) | 0.6719 (3) | 0.0694 (9) | |
H1A | −0.0282 | −0.0510 | 0.6111 | 0.083* | |
H1B | 0.0885 | −0.1959 | 0.6384 | 0.083* | |
C2 | 0.0108 (3) | −0.1346 (10) | 0.7998 (3) | 0.0938 (16) | |
H2A | −0.0511 | −0.2391 | 0.7881 | 0.113* | |
H2B | −0.0331 | −0.0277 | 0.8313 | 0.113* | |
C3 | 0.1333 (3) | −0.1883 (7) | 0.8991 (3) | 0.0795 (12) | |
H3A | 0.1061 | −0.2173 | 0.9807 | 0.095* | |
H3B | 0.1732 | −0.3005 | 0.8700 | 0.095* | |
C4 | 0.2366 (3) | −0.0303 (5) | 0.9198 (2) | 0.0545 (7) | |
C5 | 0.2709 (2) | 0.0271 (3) | 0.7882 (2) | 0.0400 (5) | |
H5 | 0.3093 | −0.0863 | 0.7567 | 0.048* | |
C6 | 0.3814 (2) | 0.1752 (4) | 0.7989 (2) | 0.0482 (6) | |
H6A | 0.3501 | 0.2943 | 0.8272 | 0.058* | |
H6B | 0.4571 | 0.1352 | 0.8616 | 0.058* | |
C7 | 0.4201 (2) | 0.1974 (3) | 0.6697 (2) | 0.0438 (5) | |
C8 | 0.3125 (3) | 0.2269 (4) | 0.5558 (2) | 0.0493 (6) | |
H8 | 0.2754 | 0.3536 | 0.5590 | 0.059* | |
C9 | 0.2037 (2) | 0.0820 (4) | 0.5517 (2) | 0.0468 (6) | |
H9A | 0.2377 | −0.0411 | 0.5347 | 0.056* | |
H9B | 0.1317 | 0.1120 | 0.4820 | 0.056* | |
C10 | 0.1512 (2) | 0.0772 (4) | 0.6805 (2) | 0.0480 (6) | |
C11 | 0.5357 (2) | 0.1772 (4) | 0.6310 (2) | 0.0469 (6) | |
C12 | 0.5101 (3) | 0.1860 (4) | 0.4896 (3) | 0.0507 (6) | |
C13 | 0.6713 (3) | 0.1422 (6) | 0.7066 (3) | 0.0659 (8) | |
H13A | 0.6695 | 0.1563 | 0.7970 | 0.099* | |
H13B | 0.7324 | 0.2312 | 0.6812 | 0.099* | |
H13C | 0.6990 | 0.0169 | 0.6901 | 0.099* | |
C14 | 0.0832 (4) | 0.2651 (6) | 0.7002 (4) | 0.0763 (10) | |
H14A | 0.0210 | 0.2956 | 0.6237 | 0.114* | |
H14B | 0.1487 | 0.3627 | 0.7171 | 0.114* | |
H14C | 0.0373 | 0.2545 | 0.7720 | 0.114* | |
C15 | 0.1959 (3) | 0.1322 (8) | 0.9998 (3) | 0.0838 (13) | |
H15A | 0.1939 | 0.0893 | 1.0859 | 0.126* | |
H15B | 0.1096 | 0.1764 | 0.9613 | 0.126* | |
H15C | 0.2588 | 0.2329 | 1.0025 | 0.126* | |
O1 | 0.35464 (17) | −0.1021 (3) | 0.99853 (14) | 0.0547 (5) | |
H1 | 0.3829 | −0.1911 | 0.9619 | 0.082* | |
O2 | 0.37912 (19) | 0.2109 (3) | 0.44542 (16) | 0.0572 (5) | |
O3 | 0.5884 (2) | 0.1702 (4) | 0.41479 (17) | 0.0635 (6) | |
O4 | 0.4640 (3) | 0.6381 (4) | 0.85924 (19) | 0.0861 (8) | |
H4WA | 0.4612 | 0.6284 | 0.7803 | 0.103* | |
H4WB | 0.5174 | 0.5467 | 0.8853 | 0.103* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0398 (13) | 0.106 (3) | 0.0599 (16) | −0.0191 (17) | 0.0010 (11) | 0.0081 (18) |
C2 | 0.0463 (14) | 0.165 (5) | 0.0689 (19) | −0.033 (2) | 0.0068 (13) | 0.020 (3) |
C3 | 0.0572 (17) | 0.123 (3) | 0.0595 (16) | −0.025 (2) | 0.0128 (13) | 0.025 (2) |
C4 | 0.0433 (13) | 0.0820 (19) | 0.0394 (12) | 0.0026 (13) | 0.0106 (9) | 0.0026 (14) |
C5 | 0.0330 (11) | 0.0499 (13) | 0.0371 (11) | 0.0018 (9) | 0.0065 (8) | −0.0020 (9) |
C6 | 0.0447 (12) | 0.0580 (14) | 0.0414 (11) | −0.0076 (12) | 0.0057 (9) | −0.0093 (12) |
C7 | 0.0467 (12) | 0.0426 (12) | 0.0412 (11) | −0.0065 (10) | 0.0054 (9) | −0.0028 (10) |
C8 | 0.0525 (13) | 0.0519 (13) | 0.0432 (12) | 0.0018 (11) | 0.0072 (10) | 0.0079 (11) |
C9 | 0.0416 (12) | 0.0578 (14) | 0.0384 (11) | 0.0031 (11) | −0.0006 (9) | 0.0050 (11) |
C10 | 0.0352 (11) | 0.0638 (15) | 0.0433 (12) | 0.0049 (12) | 0.0022 (9) | 0.0014 (12) |
C11 | 0.0474 (12) | 0.0495 (13) | 0.0441 (12) | −0.0106 (11) | 0.0090 (9) | −0.0033 (11) |
C12 | 0.0594 (14) | 0.0468 (13) | 0.0481 (12) | −0.0101 (12) | 0.0152 (10) | 0.0021 (12) |
C13 | 0.0443 (13) | 0.094 (2) | 0.0591 (15) | −0.0076 (16) | 0.0085 (11) | −0.0161 (17) |
C14 | 0.0619 (18) | 0.095 (3) | 0.0706 (19) | 0.0369 (19) | 0.0087 (14) | 0.0012 (18) |
C15 | 0.0711 (19) | 0.135 (4) | 0.0500 (15) | 0.036 (2) | 0.0229 (13) | −0.010 (2) |
O1 | 0.0528 (10) | 0.0745 (13) | 0.0355 (8) | 0.0038 (9) | 0.0039 (7) | 0.0017 (8) |
O2 | 0.0614 (11) | 0.0679 (12) | 0.0431 (9) | −0.0022 (10) | 0.0112 (7) | 0.0131 (9) |
O3 | 0.0697 (12) | 0.0720 (13) | 0.0536 (10) | −0.0126 (11) | 0.0248 (9) | 0.0002 (11) |
O4 | 0.1200 (19) | 0.0856 (18) | 0.0479 (10) | 0.0426 (17) | 0.0013 (11) | −0.0041 (11) |
C1—C2 | 1.515 (4) | C8—C9 | 1.512 (4) |
C1—C10 | 1.541 (4) | C8—H8 | 0.9800 |
C1—H1A | 0.9700 | C9—C10 | 1.545 (3) |
C1—H1B | 0.9700 | C9—H9A | 0.9700 |
C2—C3 | 1.536 (5) | C9—H9B | 0.9700 |
C2—H2A | 0.9700 | C10—C14 | 1.537 (4) |
C2—H2B | 0.9700 | C11—C12 | 1.468 (4) |
C3—C4 | 1.532 (5) | C11—C13 | 1.497 (4) |
C3—H3A | 0.9700 | C12—O3 | 1.223 (3) |
C3—H3B | 0.9700 | C12—O2 | 1.354 (4) |
C4—O1 | 1.436 (3) | C13—H13A | 0.9600 |
C4—C15 | 1.530 (5) | C13—H13B | 0.9600 |
C4—C5 | 1.542 (3) | C13—H13C | 0.9600 |
C5—C6 | 1.536 (3) | C14—H14A | 0.9600 |
C5—C10 | 1.559 (3) | C14—H14B | 0.9600 |
C5—H5 | 0.9800 | C14—H14C | 0.9600 |
C6—C7 | 1.490 (3) | C15—H15A | 0.9600 |
C6—H6A | 0.9700 | C15—H15B | 0.9600 |
C6—H6B | 0.9700 | C15—H15C | 0.9600 |
C7—C11 | 1.325 (3) | O1—H1 | 0.8200 |
C7—C8 | 1.496 (3) | O4—H4WA | 0.8291 |
C8—O2 | 1.451 (3) | O4—H4WB | 0.8628 |
C2—C1—C10 | 113.7 (3) | O2—C8—H8 | 109.8 |
C2—C1—H1A | 108.8 | C7—C8—H8 | 109.8 |
C10—C1—H1A | 108.8 | C9—C8—H8 | 109.8 |
C2—C1—H1B | 108.8 | C8—C9—C10 | 110.9 (2) |
C10—C1—H1B | 108.8 | C8—C9—H9A | 109.5 |
H1A—C1—H1B | 107.7 | C10—C9—H9A | 109.5 |
C1—C2—C3 | 110.4 (2) | C8—C9—H9B | 109.5 |
C1—C2—H2A | 109.6 | C10—C9—H9B | 109.5 |
C3—C2—H2A | 109.6 | H9A—C9—H9B | 108.0 |
C1—C2—H2B | 109.6 | C14—C10—C1 | 110.2 (2) |
C3—C2—H2B | 109.6 | C14—C10—C9 | 109.5 (2) |
H2A—C2—H2B | 108.1 | C1—C10—C9 | 107.3 (2) |
C4—C3—C2 | 112.2 (4) | C14—C10—C5 | 114.7 (2) |
C4—C3—H3A | 109.2 | C1—C10—C5 | 107.8 (2) |
C2—C3—H3A | 109.2 | C9—C10—C5 | 107.04 (18) |
C4—C3—H3B | 109.2 | C7—C11—C12 | 107.2 (2) |
C2—C3—H3B | 109.2 | C7—C11—C13 | 130.6 (2) |
H3A—C3—H3B | 107.9 | C12—C11—C13 | 122.1 (2) |
O1—C4—C15 | 103.5 (2) | O3—C12—O2 | 120.9 (3) |
O1—C4—C3 | 108.3 (3) | O3—C12—C11 | 128.9 (3) |
C15—C4—C3 | 112.5 (3) | O2—C12—C11 | 110.2 (2) |
O1—C4—C5 | 108.18 (19) | C11—C13—H13A | 109.4 |
C15—C4—C5 | 114.9 (3) | C11—C13—H13B | 109.4 |
C3—C4—C5 | 109.1 (2) | H13A—C13—H13B | 109.5 |
C6—C5—C4 | 113.3 (2) | C11—C13—H13C | 109.5 |
C6—C5—C10 | 112.0 (2) | H13A—C13—H13C | 109.5 |
C4—C5—C10 | 116.10 (19) | H13B—C13—H13C | 109.5 |
C6—C5—H5 | 104.7 | C10—C14—H14A | 109.5 |
C4—C5—H5 | 104.7 | C10—C14—H14B | 109.5 |
C10—C5—H5 | 104.7 | H14A—C14—H14B | 109.5 |
C7—C6—C5 | 108.42 (18) | C10—C14—H14C | 109.5 |
C7—C6—H6A | 110.0 | H14A—C14—H14C | 109.5 |
C5—C6—H6A | 110.0 | H14B—C14—H14C | 109.5 |
C7—C6—H6B | 110.0 | C4—C15—H15A | 109.5 |
C5—C6—H6B | 110.0 | C4—C15—H15B | 109.5 |
H6A—C6—H6B | 108.4 | H15A—C15—H15B | 109.5 |
C11—C7—C6 | 131.6 (2) | C4—C15—H15C | 109.5 |
C11—C7—C8 | 110.0 (2) | H15A—C15—H15C | 109.5 |
C6—C7—C8 | 118.0 (2) | H15B—C15—H15C | 109.5 |
O2—C8—C7 | 104.3 (2) | C4—O1—H1 | 109.5 |
O2—C8—C9 | 111.8 (2) | C12—O2—C8 | 108.18 (19) |
C7—C8—C9 | 111.4 (2) | H4WA—O4—H4WB | 99.5 |
C10—C1—C2—C3 | −58.1 (6) | C2—C1—C10—C5 | 53.2 (4) |
C1—C2—C3—C4 | 57.9 (5) | C8—C9—C10—C14 | 65.4 (3) |
C2—C3—C4—O1 | −171.6 (3) | C8—C9—C10—C1 | −175.0 (2) |
C2—C3—C4—C15 | 74.7 (3) | C8—C9—C10—C5 | −59.5 (3) |
C2—C3—C4—C5 | −54.1 (4) | C6—C5—C10—C14 | −60.4 (3) |
O1—C4—C5—C6 | −58.2 (3) | C4—C5—C10—C14 | 71.8 (3) |
C15—C4—C5—C6 | 56.8 (3) | C6—C5—C10—C1 | 176.4 (2) |
C3—C4—C5—C6 | −175.8 (2) | C4—C5—C10—C1 | −51.3 (3) |
O1—C4—C5—C10 | 170.1 (2) | C6—C5—C10—C9 | 61.3 (3) |
C15—C4—C5—C10 | −74.9 (3) | C4—C5—C10—C9 | −166.4 (2) |
C3—C4—C5—C10 | 52.6 (3) | C6—C7—C11—C12 | 170.7 (3) |
C4—C5—C6—C7 | 171.3 (2) | C8—C7—C11—C12 | −1.8 (3) |
C10—C5—C6—C7 | −55.0 (3) | C6—C7—C11—C13 | −6.6 (5) |
C5—C6—C7—C11 | −122.4 (3) | C8—C7—C11—C13 | −179.0 (3) |
C5—C6—C7—C8 | 49.6 (3) | C7—C11—C12—O3 | −178.5 (3) |
C11—C7—C8—O2 | 3.0 (3) | C13—C11—C12—O3 | −1.0 (5) |
C6—C7—C8—O2 | −170.6 (2) | C7—C11—C12—O2 | −0.1 (3) |
C11—C7—C8—C9 | 123.7 (2) | C13—C11—C12—O2 | 177.4 (3) |
C6—C7—C8—C9 | −49.9 (3) | O3—C12—O2—C8 | −179.4 (3) |
O2—C8—C9—C10 | 169.80 (19) | C11—C12—O2—C8 | 2.1 (3) |
C7—C8—C9—C10 | 53.6 (3) | C7—C8—O2—C12 | −3.0 (3) |
C2—C1—C10—C14 | −72.7 (4) | C9—C8—O2—C12 | −123.5 (2) |
C2—C1—C10—C9 | 168.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O4i | 0.98 | 2.63 | 3.407 (3) | 136 |
C8—H8···O3ii | 0.98 | 2.64 | 3.308 (4) | 126 |
O1—H1···O4i | 0.82 | 1.91 | 2.718 (3) | 169 |
O4—H4WA···O3ii | 0.83 | 2.05 | 2.850 (3) | 162 |
O4—H4WB···O1iii | 0.86 | 1.94 | 2.764 (3) | 159 |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, y+1/2, −z+1; (iii) −x+1, y+1/2, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O4i | 0.98 | 2.63 | 3.407 (3) | 136.3 |
C8—H8···O3ii | 0.98 | 2.64 | 3.308 (4) | 125.9 |
O1—H1···O4i | 0.82 | 1.91 | 2.718 (3) | 169.0 |
O4—H4WA···O3ii | 0.83 | 2.05 | 2.850 (3) | 162.0 |
O4—H4WB···O1iii | 0.86 | 1.94 | 2.764 (3) | 158.7 |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, y+1/2, −z+1; (iii) −x+1, y+1/2, −z+2. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (grant No. 31200257), The Overall Science and Technology Innovation program of Shaanxi Province (grant No. 2012 KTCL02–07) and the West Light Foundation of The Chinese Academy of Sciences (grant No. 2012DF05).
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