organic compounds
b]pyridin-5-yl)methanone
of (5-chloro-2-hydroxyphenyl)(3-methylisoxazolo[5,4-aDepartment of Physics, Presidency College (Autonomous), Chennai 600 005, India, and bOrganic Chemistry Division, CSIR Central Leather Research Institute, Adyar, Chennai 600 020, India
*Correspondence e-mail: raja.13nap@gmail.com
In the title compound, C14H9ClN2O3, the fused pyridine and isoxazole rings are approximately planar, making a dihedral angle of 1.14 (16)°. The molecule is twisted with the benzene ring and the mean plane through the fused pyridine-isoxazole ring system being inclined to one another by 47.03 (13)°. There is an intramolecular O—H⋯O hydrogen bond forming an S(6) ring motif. In the crystal, molecules are linked by C—H⋯N hydrogen bonds, forming chains propagating along [001]. The chains are linked by slipped parallel π–π interactions, involving inversion-related benzene rings, forming slabs lying parallel to the bc plane {inter-centroid distance = 3.770 (2) Å].
Keywords: crystal structure; polyfunctional pyridines; isoxazole; O—H⋯O hydrogen bonds; C—H⋯N hydrogen bonds.
CCDC reference: 1431889
1. Related literature
For various applications of polyfunctional pyridines, see: Knyazhanskii et al. (1996); Kürfurst et al. (1989); Enyedy et al. (2003); Arora & Knaus (1999); Kim et al. 2004); Pillai et al.(2003).
2. Experimental
2.1. Crystal data
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2.3. Refinement
|
|
Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
CCDC reference: 1431889
https://doi.org/10.1107/S2056989015019635/su5220sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989015019635/su5220Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989015019635/su5220Isup3.cml
Poly-functional pyridines are an interesting class of compounds due to their optical properties (Knyazhanskii et al., 1996; Kürfurst et al., 1989), and their biological activities (Enyedy et al., 2003), such as anticonvulsants (Arora et al., 1999), antihistaminic reagents (Kim et al., 2004), and cardivascular disorder treatments (Pillai et al., 2003). In view of such facts we herein report on the synthesis and
of the new title poly-functional pyridine compound.In the title compound, Fig. 1, the fused pyridine ring (N1/C8—C12) and isoxazole ring (O3/N2/C13/C11/C10) are almost coplanar being inclined to one another by 1.14 (16) °. The molecule is twisted with the benzene ring (C1—C6) and the mean plane through the fused pyridine-isoxazole ring system being inclined to one another by 47.03 (13) °. The
is partly determined by the intramolecular O—H···O hydrogen bond which forms an S(6) ring motif.In the crystal, molecules are linked by C—H···N hydrogen bond to form chains propagating along the c-axis direction (Table 1 and Fig. 2). The chains are linked by slipped parallel π—π interactions, involving inversion related 5-chloro-2-hydroxyphenyl rings, forming slabs parallel to the bc-plane; see Fig. 2 [Cg3—Cg3i = 3.770 (2) Å, inter-planar distance = 3.4094 (14) Å, slippage = 1.609 Å; Cg3 is the centroid of ring (C1—C6); symmetry code: (i) -x, -y, 2-z].
To a mixture of 6-chloro-3-formylchromone (1 mmol) and 3-methylisoxazol-5-amine (1 mmol) in ethanol (3 ml) was added a catalytic amount (0.050 mmol) of In(OTf)3 and the mixture was refluxed for about 20 min. The precipitated solid was filtered and dried under vacuum to afford the pure product in 87% yield. The purified compound was recrystallised from ethanol and DMSO-D6 by slow evaporation giving colourless block-like crystals.
Crystal data, data collection and structure
details are summarized in Table 2. The OH and C-bound H atoms were positioned geometrically (O—H = 0.82 Å, C–H = 0.93–0.96 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.5Ueq(O,C) for hydroxyl and methyl H atoms and 1.2Ueq(C) for other H atoms.Poly-functional pyridines are an interesting class of compounds due to their optical properties (Knyazhanskii et al., 1996; Kürfurst et al., 1989), and their biological activities (Enyedy et al., 2003), such as anticonvulsants (Arora et al., 1999), antihistaminic reagents (Kim et al., 2004), and cardivascular disorder treatments (Pillai et al., 2003). In view of such facts we herein report on the synthesis and
of the new title poly-functional pyridine compound.In the title compound, Fig. 1, the fused pyridine ring (N1/C8—C12) and isoxazole ring (O3/N2/C13/C11/C10) are almost coplanar being inclined to one another by 1.14 (16) °. The molecule is twisted with the benzene ring (C1—C6) and the mean plane through the fused pyridine-isoxazole ring system being inclined to one another by 47.03 (13) °. The
is partly determined by the intramolecular O—H···O hydrogen bond which forms an S(6) ring motif.In the crystal, molecules are linked by C—H···N hydrogen bond to form chains propagating along the c-axis direction (Table 1 and Fig. 2). The chains are linked by slipped parallel π—π interactions, involving inversion related 5-chloro-2-hydroxyphenyl rings, forming slabs parallel to the bc-plane; see Fig. 2 [Cg3—Cg3i = 3.770 (2) Å, inter-planar distance = 3.4094 (14) Å, slippage = 1.609 Å; Cg3 is the centroid of ring (C1—C6); symmetry code: (i) -x, -y, 2-z].
For various applications of polyfunctional pyridines, see: Knyazhanskii et al. (1996); Kürfurst et al. (1989); Enyedy et al. (2003); Arora & Knaus (1999); Kim et al. 2004); Pillai et al.(2003).
To a mixture of 6-chloro-3-formylchromone (1 mmol) and 3-methylisoxazol-5-amine (1 mmol) in ethanol (3 ml) was added a catalytic amount (0.050 mmol) of In(OTf)3 and the mixture was refluxed for about 20 min. The precipitated solid was filtered and dried under vacuum to afford the pure product in 87% yield. The purified compound was recrystallised from ethanol and DMSO-D6 by slow evaporation giving colourless block-like crystals.
detailsCrystal data, data collection and structure
details are summarized in Table 2. The OH and C-bound H atoms were positioned geometrically (O—H = 0.82 Å, C–H = 0.93–0.96 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.5Ueq(O,C) for hydroxyl and methyl H atoms and 1.2Ueq(C) for other H atoms.Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C14H9ClN2O3 | F(000) = 592 |
Mr = 288.68 | Dx = 1.501 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1763 reflections |
a = 11.0317 (10) Å | θ = 2.1–25.0° |
b = 11.8701 (10) Å | µ = 0.31 mm−1 |
c = 11.1220 (9) Å | T = 293 K |
β = 118.675 (2)° | Block, colourless |
V = 1277.78 (19) Å3 | 0.35 × 0.30 × 0.25 mm |
Z = 4 |
Bruker SMART APEXII CCD diffractometer | 2250 independent reflections |
Radiation source: fine-focus sealed tube | 1763 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ω and φ scans | θmax = 25.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −13→13 |
Tmin = 0.900, Tmax = 0.927 | k = −14→14 |
17705 measured reflections | l = −13→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.110 | H-atom parameters constrained |
S = 1.13 | w = 1/[σ2(Fo2) + (0.0188P)2 + 1.3834P] where P = (Fo2 + 2Fc2)/3 |
2250 reflections | (Δ/σ)max < 0.001 |
182 parameters | Δρmax = 0.28 e Å−3 |
0 restraints | Δρmin = −0.42 e Å−3 |
C14H9ClN2O3 | V = 1277.78 (19) Å3 |
Mr = 288.68 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.0317 (10) Å | µ = 0.31 mm−1 |
b = 11.8701 (10) Å | T = 293 K |
c = 11.1220 (9) Å | 0.35 × 0.30 × 0.25 mm |
β = 118.675 (2)° |
Bruker SMART APEXII CCD diffractometer | 2250 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 1763 reflections with I > 2σ(I) |
Tmin = 0.900, Tmax = 0.927 | Rint = 0.022 |
17705 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.110 | H-atom parameters constrained |
S = 1.13 | Δρmax = 0.28 e Å−3 |
2250 reflections | Δρmin = −0.42 e Å−3 |
182 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.1833 (3) | −0.0368 (3) | 0.9816 (3) | 0.0592 (8) | |
C2 | 0.1378 (3) | 0.0264 (4) | 0.8629 (3) | 0.0738 (10) | |
H2 | 0.1386 | −0.0051 | 0.7868 | 0.089* | |
C3 | 0.0917 (3) | 0.1343 (3) | 0.8560 (3) | 0.0711 (10) | |
H3 | 0.0614 | 0.1755 | 0.7755 | 0.085* | |
C4 | 0.0900 (3) | 0.1827 (3) | 0.9696 (3) | 0.0541 (7) | |
C5 | 0.1386 (2) | 0.1234 (2) | 1.0890 (2) | 0.0432 (6) | |
H5 | 0.1384 | 0.1564 | 1.1648 | 0.052* | |
C6 | 0.1887 (2) | 0.0133 (2) | 1.0988 (3) | 0.0436 (6) | |
C7 | 0.2418 (2) | −0.0531 (2) | 1.2263 (3) | 0.0455 (6) | |
C8 | 0.2796 (2) | −0.0001 (2) | 1.3606 (3) | 0.0424 (6) | |
C9 | 0.2544 (3) | −0.0637 (2) | 1.4535 (3) | 0.0578 (7) | |
H9 | 0.2125 | −0.1336 | 1.4243 | 0.069* | |
C10 | 0.3469 (3) | 0.0675 (3) | 1.6116 (3) | 0.0528 (7) | |
C11 | 0.3811 (2) | 0.1373 (2) | 1.5332 (2) | 0.0414 (6) | |
C12 | 0.3455 (2) | 0.1025 (2) | 1.4011 (2) | 0.0388 (6) | |
H12 | 0.3652 | 0.1460 | 1.3430 | 0.047* | |
C13 | 0.4447 (3) | 0.2330 (2) | 1.6185 (2) | 0.0471 (6) | |
C14 | 0.5010 (3) | 0.3350 (3) | 1.5876 (3) | 0.0607 (8) | |
H14A | 0.5386 | 0.3840 | 1.6659 | 0.091* | |
H14B | 0.4286 | 0.3733 | 1.5107 | 0.091* | |
H14C | 0.5726 | 0.3140 | 1.5662 | 0.091* | |
N1 | 0.2861 (3) | −0.0312 (2) | 1.5798 (3) | 0.0656 (7) | |
N2 | 0.4480 (3) | 0.2213 (2) | 1.7365 (2) | 0.0640 (7) | |
O1 | 0.2205 (3) | −0.1444 (2) | 0.9793 (3) | 0.0850 (8) | |
H1 | 0.2460 | −0.1732 | 1.0547 | 0.127* | |
O2 | 0.2567 (2) | −0.15626 (16) | 1.2243 (2) | 0.0661 (6) | |
O3 | 0.3854 (2) | 0.1149 (2) | 1.73518 (19) | 0.0709 (6) | |
Cl1 | 0.02472 (9) | 0.31717 (7) | 0.95930 (9) | 0.0802 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0495 (17) | 0.074 (2) | 0.0569 (18) | −0.0167 (15) | 0.0281 (14) | −0.0221 (16) |
C2 | 0.071 (2) | 0.106 (3) | 0.0519 (19) | −0.033 (2) | 0.0359 (17) | −0.0268 (19) |
C3 | 0.061 (2) | 0.102 (3) | 0.0392 (16) | −0.0353 (19) | 0.0150 (14) | 0.0022 (17) |
C4 | 0.0383 (14) | 0.0663 (18) | 0.0424 (15) | −0.0144 (13) | 0.0070 (12) | 0.0058 (13) |
C5 | 0.0346 (13) | 0.0518 (15) | 0.0355 (13) | −0.0093 (11) | 0.0106 (11) | −0.0045 (11) |
C6 | 0.0340 (13) | 0.0525 (15) | 0.0442 (14) | −0.0113 (11) | 0.0188 (11) | −0.0120 (12) |
C7 | 0.0335 (13) | 0.0425 (15) | 0.0556 (16) | 0.0001 (11) | 0.0175 (12) | −0.0020 (12) |
C8 | 0.0371 (13) | 0.0408 (14) | 0.0444 (14) | 0.0072 (11) | 0.0156 (11) | 0.0055 (11) |
C9 | 0.0558 (17) | 0.0484 (16) | 0.0618 (18) | 0.0011 (13) | 0.0222 (15) | 0.0138 (14) |
C10 | 0.0456 (16) | 0.073 (2) | 0.0380 (14) | 0.0126 (14) | 0.0183 (12) | 0.0119 (14) |
C11 | 0.0364 (13) | 0.0506 (15) | 0.0355 (13) | 0.0095 (11) | 0.0159 (11) | 0.0066 (11) |
C12 | 0.0336 (12) | 0.0447 (14) | 0.0365 (12) | 0.0059 (11) | 0.0154 (10) | 0.0061 (11) |
C13 | 0.0381 (14) | 0.0623 (17) | 0.0339 (13) | 0.0125 (12) | 0.0116 (11) | −0.0022 (12) |
C14 | 0.0591 (18) | 0.0647 (19) | 0.0491 (16) | −0.0026 (15) | 0.0185 (14) | −0.0124 (14) |
N1 | 0.0707 (17) | 0.0709 (18) | 0.0530 (15) | 0.0019 (14) | 0.0277 (13) | 0.0197 (13) |
N2 | 0.0630 (16) | 0.088 (2) | 0.0388 (13) | 0.0124 (14) | 0.0224 (12) | −0.0035 (13) |
O1 | 0.0909 (17) | 0.0841 (17) | 0.0906 (17) | −0.0042 (14) | 0.0521 (15) | −0.0375 (14) |
O2 | 0.0642 (13) | 0.0443 (12) | 0.0777 (15) | 0.0077 (10) | 0.0243 (11) | −0.0065 (10) |
O3 | 0.0781 (15) | 0.0984 (18) | 0.0404 (11) | 0.0073 (13) | 0.0317 (11) | 0.0092 (11) |
Cl1 | 0.0684 (5) | 0.0677 (5) | 0.0732 (6) | −0.0036 (4) | 0.0090 (4) | 0.0258 (4) |
C1—O1 | 1.345 (4) | C9—N1 | 1.331 (4) |
C1—C2 | 1.386 (5) | C9—H9 | 0.9300 |
C1—C6 | 1.408 (4) | C10—N1 | 1.312 (4) |
C2—C3 | 1.366 (5) | C10—O3 | 1.351 (3) |
C2—H2 | 0.9300 | C10—C11 | 1.380 (4) |
C3—C4 | 1.396 (4) | C11—C12 | 1.390 (3) |
C3—H3 | 0.9300 | C11—C13 | 1.430 (4) |
C4—C5 | 1.365 (4) | C12—H12 | 0.9300 |
C4—Cl1 | 1.733 (3) | C13—N2 | 1.302 (3) |
C5—C6 | 1.403 (4) | C13—C14 | 1.474 (4) |
C5—H5 | 0.9300 | C14—H14A | 0.9600 |
C6—C7 | 1.476 (4) | C14—H14B | 0.9600 |
C7—O2 | 1.237 (3) | C14—H14C | 0.9600 |
C7—C8 | 1.485 (4) | N2—O3 | 1.436 (3) |
C8—C12 | 1.378 (3) | O1—H1 | 0.8200 |
C8—C9 | 1.411 (4) | ||
O1—C1—C2 | 118.0 (3) | N1—C9—H9 | 117.5 |
O1—C1—C6 | 122.8 (3) | C8—C9—H9 | 117.5 |
C2—C1—C6 | 119.2 (3) | N1—C10—O3 | 121.1 (3) |
C3—C2—C1 | 121.1 (3) | N1—C10—C11 | 128.7 (3) |
C3—C2—H2 | 119.5 | O3—C10—C11 | 110.2 (3) |
C1—C2—H2 | 119.5 | C10—C11—C12 | 117.7 (3) |
C2—C3—C4 | 120.1 (3) | C10—C11—C13 | 104.7 (2) |
C2—C3—H3 | 120.0 | C12—C11—C13 | 137.5 (2) |
C4—C3—H3 | 120.0 | C8—C12—C11 | 116.4 (2) |
C5—C4—C3 | 120.0 (3) | C8—C12—H12 | 121.8 |
C5—C4—Cl1 | 119.7 (2) | C11—C12—H12 | 121.8 |
C3—C4—Cl1 | 120.4 (2) | N2—C13—C11 | 110.5 (3) |
C4—C5—C6 | 120.8 (3) | N2—C13—C14 | 120.7 (3) |
C4—C5—H5 | 119.6 | C11—C13—C14 | 128.7 (2) |
C6—C5—H5 | 119.6 | C13—C14—H14A | 109.5 |
C5—C6—C1 | 118.8 (3) | C13—C14—H14B | 109.5 |
C5—C6—C7 | 122.2 (2) | H14A—C14—H14B | 109.5 |
C1—C6—C7 | 119.0 (3) | C13—C14—H14C | 109.5 |
O2—C7—C6 | 120.4 (2) | H14A—C14—H14C | 109.5 |
O2—C7—C8 | 117.6 (2) | H14B—C14—H14C | 109.5 |
C6—C7—C8 | 122.0 (2) | C10—N1—C9 | 112.6 (2) |
C12—C8—C9 | 119.5 (2) | C13—N2—O3 | 107.7 (2) |
C12—C8—C7 | 123.5 (2) | C1—O1—H1 | 109.5 |
C9—C8—C7 | 116.8 (2) | C10—O3—N2 | 106.9 (2) |
N1—C9—C8 | 125.0 (3) | ||
O1—C1—C2—C3 | 176.6 (3) | C7—C8—C9—N1 | 177.5 (3) |
C6—C1—C2—C3 | −3.4 (5) | N1—C10—C11—C12 | 1.4 (4) |
C1—C2—C3—C4 | 0.1 (5) | O3—C10—C11—C12 | −178.4 (2) |
C2—C3—C4—C5 | 2.1 (4) | N1—C10—C11—C13 | 179.9 (3) |
C2—C3—C4—Cl1 | −177.2 (2) | O3—C10—C11—C13 | 0.1 (3) |
C3—C4—C5—C6 | −0.9 (4) | C9—C8—C12—C11 | −1.1 (3) |
Cl1—C4—C5—C6 | 178.34 (18) | C7—C8—C12—C11 | −176.2 (2) |
C4—C5—C6—C1 | −2.4 (4) | C10—C11—C12—C8 | −0.4 (3) |
C4—C5—C6—C7 | −180.0 (2) | C13—C11—C12—C8 | −178.3 (3) |
O1—C1—C6—C5 | −175.5 (2) | C10—C11—C13—N2 | 0.0 (3) |
C2—C1—C6—C5 | 4.4 (4) | C12—C11—C13—N2 | 178.0 (3) |
O1—C1—C6—C7 | 2.2 (4) | C10—C11—C13—C14 | −179.6 (3) |
C2—C1—C6—C7 | −177.9 (3) | C12—C11—C13—C14 | −1.6 (5) |
C5—C6—C7—O2 | 164.1 (2) | O3—C10—N1—C9 | 179.3 (3) |
C1—C6—C7—O2 | −13.5 (4) | C11—C10—N1—C9 | −0.6 (4) |
C5—C6—C7—C8 | −16.1 (4) | C8—C9—N1—C10 | −1.2 (4) |
C1—C6—C7—C8 | 166.3 (2) | C11—C13—N2—O3 | 0.0 (3) |
O2—C7—C8—C12 | 140.6 (3) | C14—C13—N2—O3 | 179.6 (2) |
C6—C7—C8—C12 | −39.3 (4) | N1—C10—O3—N2 | −179.9 (2) |
O2—C7—C8—C9 | −34.7 (3) | C11—C10—O3—N2 | −0.1 (3) |
C6—C7—C8—C9 | 145.5 (2) | C13—N2—O3—C10 | 0.0 (3) |
C12—C8—C9—N1 | 2.1 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2 | 0.82 | 1.84 | 2.561 (4) | 145 |
C12—H12···N2i | 0.93 | 2.40 | 3.315 (4) | 168 |
Symmetry code: (i) x, −y+1/2, z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2 | 0.82 | 1.84 | 2.561 (4) | 145 |
C12—H12···N2i | 0.93 | 2.40 | 3.315 (4) | 168 |
Symmetry code: (i) x, −y+1/2, z−1/2. |
Acknowledgements
The authors thank the Department of Chemistry, IIT, Chennai, India, for the data collection.
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