organic compounds
of 3-benzyl-1-[(cyclohexylidene)amino]thiourea
aFaculty of Science & Engineering, School of Healthcare Science, Manchester Metropolitan University, Manchester M1 5GD, England, bChemistry Department, Faculty of Science, Minia University, 61519 El-Minia, Egypt, cDepartment of Chemistry, Tulane University, New Orleans, LA 70118, USA, dDepartment of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey, and eKirkuk University, College of Education, Department of Chemistry, Kirkuk, Iraq
*Correspondence e-mail: shaabankamel@yahoo.com
The conformation of the title compound, C14H19N3S, is partially determined by an intramolecular N—H⋯N hydrogen-bond interaction, although the N—H⋯N angle of 108° is quite small. The cyclohexylidene ring has a chair conformation and its mean plane is inclined to the benzene ring by 46.30 (8)°. In the crystal, molecules are linked by pairs of N—H⋯S hydrogen bonds, forming inversion dimers, with an R22(8) ring motif. The dimers are reinforced by pairs of C—H⋯S hydrogen bonds, and are linked by further weak C—H⋯S hydrogen bonds, forming chains propagating along [100].
Keywords: crystal structure; thioureas; chelating agents; hydrogen bonding.
CCDC reference: 1435497
1. Related literature
For pharmacuetical properties of both thiosemicarbazones and their metal complexes, see: Kalinowski & Richardson (2005, 2007); Smee & Sidwell (2003); Pandeya et al. (1999); Beraldo & Gambino (2004); Chohan et al. (2004). For the synthesis of the title compound, see: Mague et al. (2014).
2. Experimental
2.1. Crystal data
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2.3. Refinement
|
Data collection: APEX2 (Bruker, 2014); cell SAINT (Bruker, 2014); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: DIAMOND (Brandenburg & Putz, 2012); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
CCDC reference: 1435497
https://doi.org/10.1107/S205698901502112X/su5234sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S205698901502112X/su5234Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S205698901502112X/su5234Isup3.cml
The title compound was prepared according to our recently reported method (Mague et al., 2014). Colourless crystals suitable for X-ray analysis were obtained by crystallization of the crude product from ethanol (yield 91%; m.p. 375–376 K).
H atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.99 Å) while those attached to nitrogen were placed in locations derived from a difference map and their parameters adjusted to give N—H = 0.91 Å. They were all included as riding contributions with Uiso(H) = 1.2Ueq(N,C).
Both thiosemicarbazones and their metal complexes have been studied as potential antiviral, antibacterial, antimycobacterial, antiprotozoal, antifungal, and antineoplastic agents (Kalinowski & Richardson, 2005; Kalinowski & Richardson, 2007; Smee & Sidwell, 2003; Pandeya et al., 1999). Furthermore, their anticonvulsant and neurotropic effects also have been reported (Beraldo & Gambino, 2004). The antifungal properties of thiosemicarbazones can be increased upon complexation with metal ions (Chohan et al., 2004). Based on such facts and following to our on-going study on synthesis of bio-active molecules we report in this study the synthesis and
of the title compound.In the title compound, Fig. 1, the cyclohexylidene ring has a chair conformation with puckering parameters of Q = 0.564 (2) Å, θ = 177.2 (2)° and φ = 64 (4)°. The of the molecule may also be partially determined by an intramolecular N1—H1A···N3 hydrogen bond (H1A···N3 = 2.14 Å), although the N1—H1A···N3 angle of 108 ° is quite small (see Table 1).
In the crystal, molecules form inversion dimers through complementary N2—H2A···S1i and C10—H10B···S1i hydrogen bonds (Table 1 and Fig. 2). The dimers are linked by further C-H···S hydrogen bonds forming chains along direction [100]; Table 1.
For pharmacuetical properties of both thiosemicarbazones and their metal complexes, see: Kalinowski & Richardson (2005, 2007); Smee & Sidwell (2003); Pandeya et al. (1999); Beraldo & Gambino (2004); Chohan et al. (2004). For the synthesis of the title compound, see: Mague et al. (2014).
Data collection: APEX2 (Bruker, 2014); cell
SAINT (Bruker, 2014); data reduction: SAINT (Bruker, 2014); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: DIAMOND (Brandenburg & Putz, 2012); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound, showing the atom-labeling scheme and 50% probability displacement ellipsoids. | |
Fig. 2. The crystal packing of the title compound, viewed along the a axis. The N—H···S and C—H···S hydrogen bonds appear as dotted lines (see Table 1). |
C14H19N3S | Z = 2 |
Mr = 261.38 | F(000) = 280 |
Triclinic, P1 | Dx = 1.288 Mg m−3 |
a = 6.5537 (3) Å | Cu Kα radiation, λ = 1.54178 Å |
b = 10.5247 (5) Å | Cell parameters from 4705 reflections |
c = 11.3403 (5) Å | θ = 4.3–72.1° |
α = 113.682 (1)° | µ = 2.01 mm−1 |
β = 92.969 (2)° | T = 150 K |
γ = 106.610 (2)° | Block, colourless |
V = 673.96 (5) Å3 | 0.31 × 0.20 × 0.16 mm |
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer | 2509 independent reflections |
Radiation source: INCOATEC IµS micro–focus source | 2403 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.019 |
Detector resolution: 10.4167 pixels mm-1 | θmax = 72.1°, θmin = 4.3° |
ω scans | h = −7→8 |
Absorption correction: multi-scan (SADABS; Bruker, 2014) | k = −12→12 |
Tmin = 0.66, Tmax = 0.73 | l = −13→13 |
5045 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: mixed |
wR(F2) = 0.086 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0345P)2 + 0.3099P] where P = (Fo2 + 2Fc2)/3 |
2509 reflections | (Δ/σ)max < 0.001 |
163 parameters | Δρmax = 0.23 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C14H19N3S | γ = 106.610 (2)° |
Mr = 261.38 | V = 673.96 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.5537 (3) Å | Cu Kα radiation |
b = 10.5247 (5) Å | µ = 2.01 mm−1 |
c = 11.3403 (5) Å | T = 150 K |
α = 113.682 (1)° | 0.31 × 0.20 × 0.16 mm |
β = 92.969 (2)° |
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer | 2509 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2014) | 2403 reflections with I > 2σ(I) |
Tmin = 0.66, Tmax = 0.73 | Rint = 0.019 |
5045 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.086 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.23 e Å−3 |
2509 reflections | Δρmin = −0.23 e Å−3 |
163 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.99 Å) while those attached to nitrogen were placed in locations derived from a difference map and their parameters adjusted to give N—H = 0.91 Å. All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.84373 (6) | 0.04432 (4) | 0.36001 (3) | 0.02549 (12) | |
N1 | 0.58096 (18) | 0.18119 (13) | 0.48809 (11) | 0.0220 (3) | |
H1A | 0.5393 | 0.2255 | 0.5652 | 0.026* | |
N2 | 0.83691 (18) | 0.15744 (12) | 0.61404 (11) | 0.0206 (2) | |
H2A | 0.9318 | 0.1107 | 0.6194 | 0.025* | |
N3 | 0.73740 (19) | 0.21975 (13) | 0.71731 (11) | 0.0226 (3) | |
C1 | 0.5199 (2) | 0.30572 (15) | 0.35057 (12) | 0.0199 (3) | |
C2 | 0.7361 (2) | 0.39067 (16) | 0.37044 (13) | 0.0242 (3) | |
H2 | 0.8478 | 0.3640 | 0.4008 | 0.029* | |
C3 | 0.7893 (3) | 0.51413 (17) | 0.34603 (15) | 0.0288 (3) | |
H3 | 0.9371 | 0.5720 | 0.3603 | 0.035* | |
C4 | 0.6271 (3) | 0.55336 (17) | 0.30082 (15) | 0.0299 (3) | |
H4 | 0.6637 | 0.6373 | 0.2833 | 0.036* | |
C5 | 0.4118 (3) | 0.46964 (17) | 0.28133 (15) | 0.0292 (3) | |
H5 | 0.3004 | 0.4962 | 0.2504 | 0.035* | |
C6 | 0.3582 (2) | 0.34677 (16) | 0.30689 (14) | 0.0244 (3) | |
H6 | 0.2101 | 0.2904 | 0.2944 | 0.029* | |
C7 | 0.4581 (2) | 0.16627 (15) | 0.36986 (13) | 0.0227 (3) | |
H7A | 0.3018 | 0.1364 | 0.3735 | 0.027* | |
H7B | 0.4804 | 0.0867 | 0.2930 | 0.027* | |
C8 | 0.7447 (2) | 0.13093 (14) | 0.49275 (13) | 0.0192 (3) | |
C9 | 0.8216 (2) | 0.25262 (15) | 0.83473 (13) | 0.0228 (3) | |
C10 | 1.0256 (2) | 0.23519 (16) | 0.88270 (13) | 0.0238 (3) | |
H10A | 1.1294 | 0.3329 | 0.9438 | 0.029* | |
H10B | 1.0940 | 0.1919 | 0.8075 | 0.029* | |
C11 | 0.9736 (2) | 0.13508 (17) | 0.95292 (14) | 0.0265 (3) | |
H11A | 0.8894 | 0.0332 | 0.8882 | 0.032* | |
H11B | 1.1105 | 0.1339 | 0.9930 | 0.032* | |
C12 | 0.8435 (2) | 0.18855 (17) | 1.05953 (14) | 0.0281 (3) | |
H12A | 0.8036 | 0.1182 | 1.0987 | 0.034* | |
H12B | 0.9349 | 0.2853 | 1.1297 | 0.034* | |
C13 | 0.6383 (2) | 0.20312 (18) | 1.00518 (14) | 0.0284 (3) | |
H13A | 0.5616 | 0.2417 | 1.0773 | 0.034* | |
H13B | 0.5406 | 0.1050 | 0.9405 | 0.034* | |
C14 | 0.6939 (3) | 0.30723 (18) | 0.93927 (15) | 0.0297 (3) | |
H14A | 0.5589 | 0.3111 | 0.8997 | 0.036* | |
H14B | 0.7803 | 0.4079 | 1.0054 | 0.036* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0279 (2) | 0.0337 (2) | 0.02208 (19) | 0.01730 (16) | 0.00831 (13) | 0.01400 (15) |
N1 | 0.0244 (6) | 0.0269 (6) | 0.0220 (6) | 0.0131 (5) | 0.0072 (4) | 0.0143 (5) |
N2 | 0.0229 (6) | 0.0239 (6) | 0.0212 (6) | 0.0113 (5) | 0.0064 (4) | 0.0131 (5) |
N3 | 0.0276 (6) | 0.0239 (6) | 0.0229 (6) | 0.0123 (5) | 0.0088 (5) | 0.0135 (5) |
C1 | 0.0234 (7) | 0.0219 (7) | 0.0152 (6) | 0.0089 (6) | 0.0042 (5) | 0.0079 (5) |
C2 | 0.0228 (7) | 0.0274 (7) | 0.0234 (7) | 0.0084 (6) | 0.0031 (5) | 0.0123 (6) |
C3 | 0.0291 (7) | 0.0267 (8) | 0.0282 (7) | 0.0043 (6) | 0.0071 (6) | 0.0129 (6) |
C4 | 0.0425 (9) | 0.0251 (7) | 0.0286 (7) | 0.0132 (7) | 0.0121 (6) | 0.0161 (6) |
C5 | 0.0355 (8) | 0.0308 (8) | 0.0304 (8) | 0.0182 (7) | 0.0075 (6) | 0.0172 (6) |
C6 | 0.0241 (7) | 0.0275 (7) | 0.0249 (7) | 0.0113 (6) | 0.0054 (5) | 0.0126 (6) |
C7 | 0.0197 (6) | 0.0241 (7) | 0.0253 (7) | 0.0067 (6) | 0.0006 (5) | 0.0125 (6) |
C8 | 0.0188 (6) | 0.0177 (6) | 0.0231 (6) | 0.0044 (5) | 0.0045 (5) | 0.0119 (5) |
C9 | 0.0291 (7) | 0.0214 (7) | 0.0234 (7) | 0.0108 (6) | 0.0070 (5) | 0.0130 (6) |
C10 | 0.0250 (7) | 0.0258 (7) | 0.0209 (6) | 0.0085 (6) | 0.0043 (5) | 0.0103 (6) |
C11 | 0.0314 (7) | 0.0296 (8) | 0.0241 (7) | 0.0150 (6) | 0.0047 (6) | 0.0139 (6) |
C12 | 0.0339 (8) | 0.0333 (8) | 0.0225 (7) | 0.0131 (7) | 0.0067 (6) | 0.0159 (6) |
C13 | 0.0282 (7) | 0.0366 (8) | 0.0216 (7) | 0.0122 (6) | 0.0086 (6) | 0.0126 (6) |
C14 | 0.0369 (8) | 0.0361 (8) | 0.0250 (7) | 0.0227 (7) | 0.0099 (6) | 0.0144 (6) |
S1—C8 | 1.6898 (13) | C6—H6 | 0.9500 |
N1—C8 | 1.3323 (17) | C7—H7A | 0.9900 |
N1—C7 | 1.4551 (17) | C7—H7B | 0.9900 |
N1—H1A | 0.9098 | C9—C10 | 1.5041 (19) |
N2—C8 | 1.3580 (17) | C9—C14 | 1.5053 (19) |
N2—N3 | 1.3905 (16) | C10—C11 | 1.5353 (19) |
N2—H2A | 0.9098 | C10—H10A | 0.9900 |
N3—C9 | 1.2814 (18) | C10—H10B | 0.9900 |
C1—C6 | 1.3911 (19) | C11—C12 | 1.530 (2) |
C1—C2 | 1.392 (2) | C11—H11A | 0.9900 |
C1—C7 | 1.5144 (18) | C11—H11B | 0.9900 |
C2—C3 | 1.388 (2) | C12—C13 | 1.523 (2) |
C2—H2 | 0.9500 | C12—H12A | 0.9900 |
C3—C4 | 1.389 (2) | C12—H12B | 0.9900 |
C3—H3 | 0.9500 | C13—C14 | 1.533 (2) |
C4—C5 | 1.384 (2) | C13—H13A | 0.9900 |
C4—H4 | 0.9500 | C13—H13B | 0.9900 |
C5—C6 | 1.390 (2) | C14—H14A | 0.9900 |
C5—H5 | 0.9500 | C14—H14B | 0.9900 |
C8—N1—C7 | 125.66 (12) | N3—C9—C10 | 128.89 (13) |
C8—N1—H1A | 117.0 | N3—C9—C14 | 116.47 (12) |
C7—N1—H1A | 117.3 | C10—C9—C14 | 114.51 (12) |
C8—N2—N3 | 116.90 (11) | C9—C10—C11 | 110.25 (12) |
C8—N2—H2A | 117.8 | C9—C10—H10A | 109.6 |
N3—N2—H2A | 122.8 | C11—C10—H10A | 109.6 |
C9—N3—N2 | 119.80 (12) | C9—C10—H10B | 109.6 |
C6—C1—C2 | 119.17 (13) | C11—C10—H10B | 109.6 |
C6—C1—C7 | 119.45 (12) | H10A—C10—H10B | 108.1 |
C2—C1—C7 | 121.32 (12) | C12—C11—C10 | 111.12 (12) |
C3—C2—C1 | 120.32 (13) | C12—C11—H11A | 109.4 |
C3—C2—H2 | 119.8 | C10—C11—H11A | 109.4 |
C1—C2—H2 | 119.8 | C12—C11—H11B | 109.4 |
C2—C3—C4 | 120.19 (14) | C10—C11—H11B | 109.4 |
C2—C3—H3 | 119.9 | H11A—C11—H11B | 108.0 |
C4—C3—H3 | 119.9 | C13—C12—C11 | 111.75 (12) |
C5—C4—C3 | 119.75 (13) | C13—C12—H12A | 109.3 |
C5—C4—H4 | 120.1 | C11—C12—H12A | 109.3 |
C3—C4—H4 | 120.1 | C13—C12—H12B | 109.3 |
C4—C5—C6 | 120.13 (14) | C11—C12—H12B | 109.3 |
C4—C5—H5 | 119.9 | H12A—C12—H12B | 107.9 |
C6—C5—H5 | 119.9 | C12—C13—C14 | 110.59 (12) |
C5—C6—C1 | 120.42 (14) | C12—C13—H13A | 109.5 |
C5—C6—H6 | 119.8 | C14—C13—H13A | 109.5 |
C1—C6—H6 | 119.8 | C12—C13—H13B | 109.5 |
N1—C7—C1 | 113.77 (11) | C14—C13—H13B | 109.5 |
N1—C7—H7A | 108.8 | H13A—C13—H13B | 108.1 |
C1—C7—H7A | 108.8 | C9—C14—C13 | 109.31 (12) |
N1—C7—H7B | 108.8 | C9—C14—H14A | 109.8 |
C1—C7—H7B | 108.8 | C13—C14—H14A | 109.8 |
H7A—C7—H7B | 107.7 | C9—C14—H14B | 109.8 |
N1—C8—N2 | 115.81 (12) | C13—C14—H14B | 109.8 |
N1—C8—S1 | 123.98 (10) | H14A—C14—H14B | 108.3 |
N2—C8—S1 | 120.18 (10) | ||
C8—N2—N3—C9 | −177.30 (12) | C7—N1—C8—S1 | 1.96 (19) |
C6—C1—C2—C3 | −0.4 (2) | N3—N2—C8—N1 | 6.42 (17) |
C7—C1—C2—C3 | 176.86 (13) | N3—N2—C8—S1 | −175.61 (9) |
C1—C2—C3—C4 | −0.4 (2) | N2—N3—C9—C10 | 0.8 (2) |
C2—C3—C4—C5 | 0.6 (2) | N2—N3—C9—C14 | −174.84 (12) |
C3—C4—C5—C6 | 0.0 (2) | N3—C9—C10—C11 | −120.72 (16) |
C4—C5—C6—C1 | −0.8 (2) | C14—C9—C10—C11 | 54.96 (16) |
C2—C1—C6—C5 | 1.0 (2) | C9—C10—C11—C12 | −52.49 (16) |
C7—C1—C6—C5 | −176.31 (13) | C10—C11—C12—C13 | 55.00 (17) |
C8—N1—C7—C1 | −102.88 (15) | C11—C12—C13—C14 | −56.90 (17) |
C6—C1—C7—N1 | −138.48 (13) | N3—C9—C14—C13 | 119.63 (14) |
C2—C1—C7—N1 | 44.22 (17) | C10—C9—C14—C13 | −56.62 (17) |
C7—N1—C8—N2 | 179.85 (12) | C12—C13—C14—C9 | 56.04 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N3 | 0.91 | 2.14 | 2.5713 (17) | 108 |
N2—H2A···S1i | 0.91 | 2.55 | 3.4577 (12) | 172 |
C10—H10B···S1i | 0.99 | 2.61 | 3.4847 (14) | 147 |
C7—H7A···S1ii | 0.99 | 2.85 | 3.8413 (15) | 175 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) x−1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N3 | 0.91 | 2.14 | 2.5713 (17) | 108 |
N2—H2A···S1i | 0.91 | 2.55 | 3.4577 (12) | 172 |
C10—H10B···S1i | 0.99 | 2.61 | 3.4847 (14) | 147 |
C7—H7A···S1ii | 0.99 | 2.85 | 3.8413 (15) | 175 |
Symmetry codes: (i) −x+2, −y, −z+1; (ii) x−1, y, z. |
Acknowledgements
The support of NSF–MRI Grant No. 1228232 for the purchase of the diffractometer, and Tulane University for support of the Tulane Crystallography Laboratory are gratefully acknowledged.
References
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Both thiosemicarbazones and their metal complexes have been studied as potential antiviral, antibacterial, antimycobacterial, antiprotozoal, antifungal, and antineoplastic agents (Kalinowski & Richardson, 2005; Kalinowski & Richardson, 2007; Smee & Sidwell, 2003; Pandeya et al., 1999). Furthermore, their anticonvulsant and neurotropic effects also have been reported (Beraldo & Gambino, 2004). The antifungal properties of thiosemicarbazones can be increased upon complexation with metal ions (Chohan et al., 2004). Based on such facts and following to our on-going study on synthesis of bio-active molecules we report in this study the synthesis and crystal structure of the title compound.
In the title compound, Fig. 1, the cyclohexylidene ring has a chair conformation with puckering parameters of Q = 0.564 (2) Å, θ = 177.2 (2)° and φ = 64 (4)°. The molecular conformation of the molecule may also be partially determined by an intramolecular N1—H1A···N3 hydrogen bond (H1A···N3 = 2.14 Å), although the N1—H1A···N3 angle of 108 ° is quite small (see Table 1).
In the crystal, molecules form inversion dimers through complementary N2—H2A···S1i and C10—H10B···S1i hydrogen bonds (Table 1 and Fig. 2). The dimers are linked by further C-H···S hydrogen bonds forming chains along direction [100]; Table 1.