organic compounds
H-imidazo[4,5-b]pyridin-2-yl)phenol
of 4-bromo-2-(1aLaboratoire d'Electrochimie, d'Ingénierie Moléculaire et de Catalyse Redox, Faculty of Technology, University of Ferhat Abbas Sétif-1, 19000 Sétif, Algeria
*Correspondence e-mail: k_ouari@yahoo.fr
In the title compound, C12H8BrN3O, the 4-bromophenol ring is coplanar with the planar imidazo[4,5-b]pyridine moiety (r.m.s deviation = 0.015 Å), making a dihedral angle of 1.8 (2)°. There is an intramolecular O—H⋯N hydrogen bond forming an S(6) ring motif. In the crystal, molecules are linked via N—H⋯N and O—H⋯Br hydrogen bonds, forming undulating sheets parallel to (10-2). The sheets are linked by π–π interactions [inter-centroid distance = 3.7680 (17) Å], involving inversion-related molecules, forming a three-dimensional structure.
Keywords: crystal structure; 2,3-diaminopyridine; 5-bromo-2-hydroxy-1-salycilaldehyde; hydrogen bonding.
CCDC reference: 1437912
1. Related literature
For some recent examples of transition metal complexes of et al. (2015b); Benghanem et al. (2012); Basu et al. (2010). For the biological activity of see: Yıldız et al. (2015); Salama et al. (2015); Zayed et al. (2015). For the of the title compound, see: Köse et al. (2015); Pal et al. (2015); Ray et al. (2014). For the literature method used to prepare the title compound, see: Ouari et al. (2015a). For the of a related compound, see: Belguedj et al. (2015).
see: Ouari2. Experimental
2.1. Crystal data
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2.3. Refinement
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Data collection: COLLECT (Nonius, 1998); cell DENZO (Nonius, 1998); data reduction: DENZO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
CCDC reference: 1437912
https://doi.org/10.1107/S2056989015022197/su5238sup1.cif
contains datablocks I, Global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989015022197/su5238Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989015022197/su5238Isup3.cml
Coordination chemistry of transition metal complexes with Schiff base ligands is an important and fascinating branch of chemistry (Ouari et al., 2015b; Benghanem et al., 2012; Basu et al., 2010). A literature survey revealed that this kind of compound possesses diverse biological activities such as antibiotic (Yıldız et al., 2015) and antimicrobial (Salama et al., 2015; Zayed et al., 2015). The
of the title compound has been reported (Köse et al., 2015; Pal et al., 2015; Ray et al., 2014).The molecular structure of the title compound is shown in Fig. 1. The bond distances and angles are normal and similar to those in related compounds (Belguedj et al., 2015).
In the crystal, molecules are linked via N—H···N and O—H···Br hydrogen bonds forming undulating sheets parallel to (102); see Table 1 and Fig. 2. The sheets are linked by π-π interactions [Cg2···Cg3i = 3.7680 (17) Å, Cg2 and Cg3 are the centroids of rings N3/C8—C12 and C1—C6, symmetry code: (i) - x + 1, - y + 2, - z + 2], forming a three-dimensional structure.
The title compound was prepared following a literature method (Ouari et al., 2015a). To a MeOH solution (15 ml) of 5-bromosalicylaldehyde (0.122 g, 1 mmol) was added drop wise to a MeOH solution (5 ml) of 2,3-diaminopyridine (0.109 g, 1 mmol). The mixture was refluxed with constant stirring under a nitrogen atmosphere for 3 h, yielding an abundant orange precipitate that was collected by filtration. The product was washed with methanol (3 × 5 ml) then with diethyl ether (3 × 5 ml) and dried under vacuum for 4 h. Orange crystals of the title compound, suitable for X-ray
were obtained after two weeks by slow evaporation of the DMSO solvent (yield: 70%; m.p.: 528-531 K).Crystal data, data collection and structure
details are summarized in Table 2. The iminium H atom was located from a difference Fourier map and freely refined. The OH and C-bound H atoms were included in calculated positions and treated as riding atoms: O—H = 0.82 Å, C—H = 0.95-0.99 Å with Uiso(H) = 1.5Ueq(O) and 1.2Ueq(C).Coordination chemistry of transition metal complexes with Schiff base ligands is an important and fascinating branch of chemistry (Ouari et al., 2015b; Benghanem et al., 2012; Basu et al., 2010). A literature survey revealed that this kind of compound possesses diverse biological activities such as antibiotic (Yıldız et al., 2015) and antimicrobial (Salama et al., 2015; Zayed et al., 2015). The
of the title compound has been reported (Köse et al., 2015; Pal et al., 2015; Ray et al., 2014).The molecular structure of the title compound is shown in Fig. 1. The bond distances and angles are normal and similar to those in related compounds (Belguedj et al., 2015).
In the crystal, molecules are linked via N—H···N and O—H···Br hydrogen bonds forming undulating sheets parallel to (102); see Table 1 and Fig. 2. The sheets are linked by π-π interactions [Cg2···Cg3i = 3.7680 (17) Å, Cg2 and Cg3 are the centroids of rings N3/C8—C12 and C1—C6, symmetry code: (i) - x + 1, - y + 2, - z + 2], forming a three-dimensional structure.
For some recent examples of transition metal complexes of
see: Ouari et al. (2015b); Benghanem et al. (2012); Basu et al. (2010). For the biological activity of see: Yıldız et al. (2015); Salama et al. (2015); Zayed et al. (2015). For the of the title compound, see: Köse et al. (2015); Pal et al. (2015); Ray et al. (2014). For the literature method used to prepare the title compound, see: Ouari et al. (2015a). For a related compounds, see: Belguedj et al. (2015).The title compound was prepared following a literature method (Ouari et al., 2015a). To a MeOH solution (15 ml) of 5-bromosalicylaldehyde (0.122 g, 1 mmol) was added drop wise to a MeOH solution (5 ml) of 2,3-diaminopyridine (0.109 g, 1 mmol). The mixture was refluxed with constant stirring under a nitrogen atmosphere for 3 h, yielding an abundant orange precipitate that was collected by filtration. The product was washed with methanol (3 × 5 ml) then with diethyl ether (3 × 5 ml) and dried under vacuum for 4 h. Orange crystals of the title compound, suitable for X-ray
were obtained after two weeks by slow evaporation of the DMSO solvent (yield: 70%; m.p.: 528-531 K). detailsCrystal data, data collection and structure
details are summarized in Table 2. The iminium H atom was located from a difference Fourier map and freely refined. The OH and C-bound H atoms were included in calculated positions and treated as riding atoms: O—H = 0.82 Å, C—H = 0.95-0.99 Å with Uiso(H) = 1.5Ueq(O) and 1.2Ueq(C).Data collection: COLLECT (Nonius, 1998); cell
DENZO (Nonius, 1998); data reduction: DENZO (Nonius, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C12H8BrN3O | F(000) = 576 |
Mr = 290.12 | Dx = 1.856 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4475 reflections |
a = 5.5906 (3) Å | θ = 1.0–30.0° |
b = 12.9032 (7) Å | µ = 3.94 mm−1 |
c = 14.7622 (6) Å | T = 193 K |
β = 102.836 (3)° | Plate, orange |
V = 1038.28 (9) Å3 | 0.25 × 0.20 × 0.05 mm |
Z = 4 |
Nonius KappaCCD diffractometer | 3017 independent reflections |
Radiation source: sealed tube | 1977 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.066 |
phi and ω scans | θmax = 30.0°, θmin = 2.1° |
Absorption correction: multi-scan (MULABS in PLATON; Spek, 2009) | h = −7→4 |
Tmin = 0.457, Tmax = 0.721 | k = −17→18 |
8584 measured reflections | l = −20→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.111 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.045P)2 + 0.5334P] where P = (Fo2 + 2Fc2)/3 |
3017 reflections | (Δ/σ)max = 0.002 |
159 parameters | Δρmax = 0.52 e Å−3 |
0 restraints | Δρmin = −0.84 e Å−3 |
C12H8BrN3O | V = 1038.28 (9) Å3 |
Mr = 290.12 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 5.5906 (3) Å | µ = 3.94 mm−1 |
b = 12.9032 (7) Å | T = 193 K |
c = 14.7622 (6) Å | 0.25 × 0.20 × 0.05 mm |
β = 102.836 (3)° |
Nonius KappaCCD diffractometer | 3017 independent reflections |
Absorption correction: multi-scan (MULABS in PLATON; Spek, 2009) | 1977 reflections with I > 2σ(I) |
Tmin = 0.457, Tmax = 0.721 | Rint = 0.066 |
8584 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.111 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.52 e Å−3 |
3017 reflections | Δρmin = −0.84 e Å−3 |
159 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.83482 (7) | 0.58489 (3) | 1.18198 (2) | 0.03255 (13) | |
O1 | 0.0419 (4) | 0.75774 (17) | 0.87477 (15) | 0.0274 (5) | |
H1 | 0.0891 | 0.8104 | 0.8502 | 0.041* | |
N1 | 0.7079 (5) | 0.9288 (2) | 0.95213 (18) | 0.0226 (6) | |
N2 | 0.3311 (5) | 0.91524 (19) | 0.85876 (18) | 0.0249 (6) | |
N3 | 0.8399 (5) | 1.09033 (19) | 0.89394 (18) | 0.0242 (6) | |
C1 | 0.4545 (6) | 0.7733 (2) | 0.9701 (2) | 0.0231 (7) | |
C2 | 0.6365 (6) | 0.7295 (2) | 1.0408 (2) | 0.0248 (7) | |
H2 | 0.7917 | 0.7625 | 1.0592 | 0.030* | |
C3 | 0.5911 (6) | 0.6389 (2) | 1.0835 (2) | 0.0245 (7) | |
C4 | 0.3660 (6) | 0.5889 (2) | 1.0569 (2) | 0.0276 (7) | |
H4 | 0.3362 | 0.5266 | 1.0868 | 0.033* | |
C5 | 0.1866 (6) | 0.6303 (3) | 0.9869 (2) | 0.0299 (8) | |
H5 | 0.0333 | 0.5959 | 0.9684 | 0.036* | |
C6 | 0.2276 (6) | 0.7220 (2) | 0.9429 (2) | 0.0247 (7) | |
C7 | 0.4972 (6) | 0.8720 (2) | 0.9272 (2) | 0.0229 (7) | |
C8 | 0.6765 (6) | 1.0143 (2) | 0.8952 (2) | 0.0222 (6) | |
C9 | 0.4404 (6) | 1.0061 (2) | 0.8373 (2) | 0.0233 (7) | |
C10 | 0.3592 (6) | 1.0841 (2) | 0.7730 (2) | 0.0265 (7) | |
H10 | 0.1997 | 1.0834 | 0.7336 | 0.032* | |
C11 | 0.5249 (7) | 1.1633 (2) | 0.7697 (2) | 0.0287 (7) | |
H11 | 0.4796 | 1.2182 | 0.7264 | 0.034* | |
C12 | 0.7572 (6) | 1.1635 (3) | 0.8290 (2) | 0.0281 (7) | |
H12 | 0.8647 | 1.2189 | 0.8233 | 0.034* | |
H1N | 0.843 (8) | 0.912 (3) | 0.998 (3) | 0.034 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0314 (2) | 0.0314 (2) | 0.0320 (2) | −0.00049 (16) | 0.00116 (14) | 0.00779 (15) |
O1 | 0.0181 (12) | 0.0281 (12) | 0.0317 (12) | −0.0034 (9) | −0.0036 (9) | 0.0059 (10) |
N1 | 0.0197 (14) | 0.0238 (14) | 0.0231 (13) | −0.0013 (11) | 0.0025 (11) | 0.0028 (11) |
N2 | 0.0211 (14) | 0.0251 (14) | 0.0264 (13) | −0.0024 (12) | 0.0010 (11) | −0.0003 (11) |
N3 | 0.0236 (14) | 0.0224 (14) | 0.0270 (14) | −0.0024 (11) | 0.0063 (11) | 0.0007 (11) |
C1 | 0.0212 (17) | 0.0236 (16) | 0.0258 (16) | −0.0015 (12) | 0.0079 (13) | −0.0015 (13) |
C2 | 0.0195 (17) | 0.0261 (17) | 0.0281 (16) | −0.0050 (13) | 0.0038 (13) | −0.0016 (13) |
C3 | 0.0252 (18) | 0.0223 (16) | 0.0253 (16) | 0.0027 (13) | 0.0037 (13) | 0.0003 (13) |
C4 | 0.0292 (18) | 0.0198 (15) | 0.0343 (18) | −0.0048 (14) | 0.0079 (14) | 0.0019 (14) |
C5 | 0.0261 (19) | 0.0254 (18) | 0.0381 (19) | −0.0082 (14) | 0.0070 (15) | −0.0064 (15) |
C6 | 0.0212 (17) | 0.0274 (17) | 0.0257 (16) | −0.0006 (13) | 0.0055 (13) | −0.0049 (13) |
C7 | 0.0192 (16) | 0.0259 (16) | 0.0235 (15) | −0.0018 (13) | 0.0044 (13) | −0.0017 (13) |
C8 | 0.0212 (16) | 0.0251 (16) | 0.0211 (15) | 0.0012 (13) | 0.0067 (12) | −0.0042 (13) |
C9 | 0.0220 (17) | 0.0248 (16) | 0.0235 (15) | −0.0014 (13) | 0.0056 (13) | −0.0007 (13) |
C10 | 0.0232 (17) | 0.0309 (17) | 0.0232 (15) | 0.0006 (15) | 0.0004 (12) | −0.0014 (14) |
C11 | 0.035 (2) | 0.0248 (17) | 0.0261 (17) | 0.0003 (15) | 0.0066 (14) | 0.0036 (14) |
C12 | 0.0287 (18) | 0.0255 (17) | 0.0315 (18) | −0.0025 (14) | 0.0100 (14) | 0.0014 (14) |
Br1—C3 | 1.891 (3) | C2—H2 | 0.9500 |
O1—C6 | 1.356 (4) | C3—C4 | 1.391 (5) |
O1—H1 | 0.8400 | C4—C5 | 1.378 (5) |
N1—C7 | 1.366 (4) | C4—H4 | 0.9500 |
N1—C8 | 1.375 (4) | C5—C6 | 1.393 (5) |
N1—H1N | 0.92 (4) | C5—H5 | 0.9500 |
N2—C7 | 1.333 (4) | C8—C9 | 1.407 (4) |
N2—C9 | 1.390 (4) | C9—C10 | 1.390 (4) |
N3—C8 | 1.344 (4) | C10—C11 | 1.387 (5) |
N3—C12 | 1.352 (4) | C10—H10 | 0.9500 |
C1—C2 | 1.405 (4) | C11—C12 | 1.395 (5) |
C1—C6 | 1.408 (4) | C11—H11 | 0.9500 |
C1—C7 | 1.465 (4) | C12—H12 | 0.9500 |
C2—C3 | 1.378 (4) | ||
C6—O1—H1 | 109.5 | O1—C6—C5 | 117.2 (3) |
C7—N1—C8 | 106.2 (3) | O1—C6—C1 | 123.0 (3) |
C7—N1—H1N | 126 (2) | C5—C6—C1 | 119.9 (3) |
C8—N1—H1N | 127 (2) | N2—C7—N1 | 113.2 (3) |
C7—N2—C9 | 104.9 (3) | N2—C7—C1 | 122.6 (3) |
C8—N3—C12 | 113.1 (3) | N1—C7—C1 | 124.3 (3) |
C2—C1—C6 | 118.7 (3) | N3—C8—N1 | 126.8 (3) |
C2—C1—C7 | 120.7 (3) | N3—C8—C9 | 126.6 (3) |
C6—C1—C7 | 120.6 (3) | N1—C8—C9 | 106.6 (3) |
C3—C2—C1 | 120.3 (3) | C10—C9—N2 | 132.3 (3) |
C3—C2—H2 | 119.8 | C10—C9—C8 | 118.7 (3) |
C1—C2—H2 | 119.8 | N2—C9—C8 | 109.0 (3) |
C2—C3—C4 | 120.8 (3) | C11—C10—C9 | 116.0 (3) |
C2—C3—Br1 | 119.4 (2) | C11—C10—H10 | 122.0 |
C4—C3—Br1 | 119.9 (2) | C9—C10—H10 | 122.0 |
C5—C4—C3 | 119.6 (3) | C10—C11—C12 | 121.0 (3) |
C5—C4—H4 | 120.2 | C10—C11—H11 | 119.5 |
C3—C4—H4 | 120.2 | C12—C11—H11 | 119.5 |
C4—C5—C6 | 120.7 (3) | N3—C12—C11 | 124.6 (3) |
C4—C5—H5 | 119.6 | N3—C12—H12 | 117.7 |
C6—C5—H5 | 119.6 | C11—C12—H12 | 117.7 |
C6—C1—C2—C3 | −1.1 (5) | C6—C1—C7—N2 | −3.0 (5) |
C7—C1—C2—C3 | 177.2 (3) | C2—C1—C7—N1 | −1.0 (5) |
C1—C2—C3—C4 | 0.6 (5) | C6—C1—C7—N1 | 177.3 (3) |
C1—C2—C3—Br1 | −177.4 (2) | C12—N3—C8—N1 | 179.0 (3) |
C2—C3—C4—C5 | 0.1 (5) | C12—N3—C8—C9 | 0.0 (5) |
Br1—C3—C4—C5 | 178.1 (3) | C7—N1—C8—N3 | −178.5 (3) |
C3—C4—C5—C6 | −0.4 (5) | C7—N1—C8—C9 | 0.7 (3) |
C4—C5—C6—O1 | −179.9 (3) | C7—N2—C9—C10 | −179.5 (3) |
C4—C5—C6—C1 | −0.1 (5) | C7—N2—C9—C8 | 0.3 (4) |
C2—C1—C6—O1 | −179.4 (3) | N3—C8—C9—C10 | −1.6 (5) |
C7—C1—C6—O1 | 2.3 (5) | N1—C8—C9—C10 | 179.2 (3) |
C2—C1—C6—C5 | 0.8 (5) | N3—C8—C9—N2 | 178.6 (3) |
C7—C1—C6—C5 | −177.5 (3) | N1—C8—C9—N2 | −0.6 (4) |
C9—N2—C7—N1 | 0.2 (4) | N2—C9—C10—C11 | −178.4 (3) |
C9—N2—C7—C1 | −179.6 (3) | C8—C9—C10—C11 | 1.9 (4) |
C8—N1—C7—N2 | −0.6 (4) | C9—C10—C11—C12 | −0.8 (5) |
C8—N1—C7—C1 | 179.2 (3) | C8—N3—C12—C11 | 1.3 (5) |
C2—C1—C7—N2 | 178.7 (3) | C10—C11—C12—N3 | −0.9 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N2 | 0.84 | 1.90 | 2.640 (3) | 147 |
O1—H1···Br1i | 0.84 | 2.91 | 3.478 (2) | 127 |
N1—H1N···N3ii | 0.92 (4) | 2.11 (4) | 3.010 (4) | 168 (3) |
Symmetry codes: (i) x−1, −y+3/2, z−1/2; (ii) −x+2, −y+2, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N2 | 0.84 | 1.90 | 2.640 (3) | 146.7 |
O1—H1···Br1i | 0.84 | 2.91 | 3.478 (2) | 127.2 |
N1—H1N···N3ii | 0.92 (4) | 2.11 (4) | 3.010 (4) | 168 (3) |
Symmetry codes: (i) x−1, −y+3/2, z−1/2; (ii) −x+2, −y+2, −z+2. |
Acknowledgements
The author gratefully acknowledges financial support from the Algerian Ministry of Higher Education and Scientific Research. He also acknowledges the help of Dr Jean Weiss (CLAC) at the University of Strasbourg, France.
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