research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890
Volume 75| Part 10| October 2019| Pages 1479-1485
https://doi.org/10.1107/S2056989019012490

(N,N-Diiso­propyl­di­thio­carbamato)tri­phenyl­tin(IV): crystal structure, Hirshfeld surface analysis and computational study

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Farah Natasha Haezam,a Normah Awang,a‡ Nurul Farahana Kamaludin,a Mukesh M. Jotanib and Edward R. T. Tiekinkc*

aEnvironmental Health and Industrial Safety Programme, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, Jalan Raja Muda Abdul Aziz, 50300 Kuala Lumpur, Malaysia, bDepartment of Physics, Bhavan's Sheth R. A. College of Science, Ahmedabad, Gujarat 380001, India, and cResearch Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
*Correspondence e-mail: edwardt@sunway.edu.my

Edited by W. T. A. Harrison, University of Aberdeen, Scotland (Received 3 September 2019; accepted 7 September 2019; online 12 September 2019)

The crystal and mol­ecular structures of the title triorganotin di­thio­carbamate, [Sn(C6H5)3(C7H14NS2)], are described. The mol­ecular geometry about the metal atom is highly distorted being based on a C3S tetra­hedron as the di­thio­carbamate ligand is asymmetrically chelating to the tin centre. The close approach of the second thione-S atom [Sn⋯S = 2.9264 (4) Å] is largely responsible for the distortion. The mol­ecular packing is almost devoid of directional inter­actions with only weak phenyl-C—H⋯C(phen­yl) inter­actions, leading to centrosymmetric dimeric aggregates, being noted. An analysis of the calculated Hirshfeld surface points to the significance of H⋯H contacts, which contribute 66.6% of all contacts to the surface, with C⋯H/H⋯C [26.8%] and S⋯H/H⋯H [6.6%] contacts making up the balance.

CCDC reference: 1952056

Similar articles

1. Chemical context

Organotin(IV) compounds have long been investigated as potential anti-cancer agents (Gielen & Tiekink, 2005[Gielen, M. & Tiekink, E. R. T. (2005). Metallotherapeutic drugs and metal-based diagnostic agents: the use of metals in medicine, edited by M. Gielen & E. R. T. Tiekink, pp. 421-439. Chichester: John Wiley & Sons Ltd.]) and studies in this area continue. Further, organotin compounds have received much attention owing to their potential therapeutic potential as anti-fungal, anti-bacterial, anti-malarial and schizonticidal agents (Khan et al., 2014[Khan, N., Farina, Y., Mun, L. K., Rajab, N. F. & Awang, N. (2014). J. Mol. Struct. 1076, 403-410.]). Metal di­thio­carbamates have also encouraged much inter­est in the context of chemotherapeutic agents (Hogarth, 2012[Hogarth, G. (2012). Mini Rev. Med. Chem. 12, 1202-1215.]) and these include organotin(IV) di­thio­carbamate compounds (Tiekink, 2008[Tiekink, E. R. T. (2008). Appl. Organomet. Chem. 22, 533-550.]; Adeyemi & Onwudiwe, 2018[Adeyemi, J. O. & Onwudiwe, D. C. (2018). Molecules, 23 article No. 2571.]). In view of the wide-range of applications/potential of organotin(IV) di­thio­carbamate compounds and in continuation of on-going studies in this area (Khan et al., 2015[Khan, N., Farina, Y., Mun, L. K., Rajab, N. F. & Awang, N. (2015). Polyhedron, 85, 754-760.]; Mohamad et al. 2016[Mohamad, R., Awang, N., Kamaludin, N. F. & Abu Bakar, N. F. (2016). Res. J. Pharm. Biol. Chem. Sci. 7, 1269-1274.], 2017[Mohamad, R., Awang, N., Kamaludin, N. F., Jotani, M. M. & Tiekink, E. R. T. (2017). Acta Cryst. E73, 260-265.], 2018[Mohamad, R., Awang, N., Kamaludin, N. F., Jotani, M. M. & Tiekink, E. R. T. (2018). Acta Cryst. E74, 630-637.]), the title compound, Ph3Sn[S2CN(i-Pr)2], (I)[link], was synthesized and characterized spectroscopically. Herein, the crystal and mol­ecular structures of (I)[link] are described along with a detailed analysis of the mol­ecular packing via the calculated Hirshfeld surfaces and computational chemistry study.

[Scheme 1]

2. Structural commentary

The tin atom in (I)[link], Fig. 1[link], is coordinated by an asymmetrically bound di­thio­carbamate ligand and three ipso-carbon atoms of the phenyl groups (Table 1[link]). The disparity in the Sn—S separations, i.e. Δ(Sn—S) = [(Sn—Sl) − (Sn—Ss)] = 0.45 Å (l = long, s = short), is rather great suggesting that the Sn⋯S2 inter­action is weak. This is supported in the pattern of C—S bond lengths with that involving the more tightly bound S1 atom being nearly 0.06 Å longer than the equivalent bond with the weakly bound S2 atom. Despite this, a clear influence of the S2 atom is noted on the Sn—C bond lengths with the Sn—C31 bond length being significantly longer than the other Sn—C bonds, Table 1[link]. The S2—Sn—C31 bond angle is 158.41 (4)° and is suggestive of a trans-influence exerted by the S2 atom; there is no other trans angle about the tin atom. If the coordination geometry is considered as tetra­hedral, the range of tetra­hedral angles is 93.24 (4)°, for S1—Sn—C31, to 119.87 (6)°, for C11—Sn—C21. The range of angles assuming a five-coordinate, C3S2, geometry is 65.260 (11)°, for the S1—Sn—S2 chelate angle to the aforementioned 158.41 (4)°. A descriptor for assigning coordination geometries to five-coordinate species is τ (Addison et al., 1984[Addison, A. W., Rao, T. N., Reedijk, J., van Rijn, J. & Verschoor, G. C. (1984). J. Chem. Soc. Dalton Trans. pp. 1349-1356.]). In the case of (I)[link], this computes to 0.64, which indicates a geometry somewhat closer to an ideal trigonal bipyramid (τ = 1.0) than to an ideal square pyramid (τ = 0.0). Also included in Table 1[link] are the C—N bond lengths, which show C1—N1 to be significantly shorter than the C2—N1 and C5—N1 bond lengths, an observation consistent with a significant contribution of the 2−S2C=N+(i-Pr)2 canonical form to the overall electronic structure of the di­thio­carbamate ligand.

Table 1
Selected bond lengths (Å)

Sn—S1 2.4792 (4) C1—S1 1.7587 (15)
Sn—S2 2.9264 (4) C1—S2 1.7006 (16)
Sn—C11 2.1446 (14) C1—N1 1.336 (2)
Sn—C21 2.1349 (15) C5—N1 1.495 (2)
Sn—C31 2.1754 (15) C2—N1 1.497 (2)
[Figure 1]
Figure 1
The mol­ecular structure of (I)[link] showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level. The long Sn1⋯S2 contact is indicated by a double-dashed line.

3. Supra­molecular features

The geometric parameters characterizing the identified inter­molecular inter­action operating in the crystal of (I)[link] are collated in Table 2[link]. A phenyl-C—H⋯C(phen­yl) contact less than the sum of the sum of the Waals radii (Spek, 2009[Spek, A. L. (2009). Acta Cryst. D65, 148-155.]) is noted to occur between centrosymmetrically related mol­ecules, Fig. 2[link](a). This is an example of a localized C—H⋯π contact whereby the hydrogen atom directed towards a single carbon atom of the ring as opposed to a delocalized inter­action where the hydrogen atom (or halide atom or lone-pair of electrons) is directed towards the centroid of the ring (Schollmeyer et al., 2008[Schollmeyer, D., Shishkin, O. V., Rühl, T. & Vysotsky, M. O. (2008). CrystEngComm, 10, 715-723.]; Tiekink, 2017[Tiekink, E. R. T. (2017). Coord. Chem. Rev. 345, 209-228.]).

Table 2
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C34—H34⋯C24i 0.95 2.82 3.757 (3) 171
Symmetry code: (i) -x+1, -y, -z.
[Figure 2]
Figure 2
Mol­ecular packing in the crystal of (I)[link]: (a) supra­molecular dimer sustained by localized phenyl-C—H⋯C(phen­yl) inter­actions shown as purple dashed lines and (b) a view of the unit-cell contents in projection down the a axis. One column of dimeric aggregates is highlighted in space-filling mode.

4. Hirshfeld surface analysis

The Hirshfeld surface calculations for (I)[link] were performed employing Crystal Explorer 17 (Turner et al., 2017[Turner, M. J., Mckinnon, J. J., Wolff, S. K., Grimwood, D. J., Spackman, P. R., Jayatilaka, D. & Spackman, M. A. (2017). Crystal Explorer 17. The University of Western Australia.]) and recently published protocols (Tan et al., 2019[Tan, S. L., Jotani, M. M. & Tiekink, E. R. T. (2019). Acta Cryst. E75, 308-318.]). In the absence of classical hydrogen bonds, the influence of the localized C—H⋯π inter­action, Table 2[link], as well as inter­atomic H⋯H and C⋯H/H⋯C contacts, Table 3[link], upon the mol­ecular packing are evident as the diminutive-red spots near the participating carbon and hydrogen atoms on the Hirshfeld surfaces mapped over dnorm in Fig. 3[link]. It is also noted that with the exception of the methyl-H7A atom, all of the specified inter­atomic contacts only involve the carbon and hydrogen atoms of the coordin­ated phenyl rings, Table 3[link]. On the Hirshfeld surface mapped over electrostatic potential in Fig. 4[link], the light-blue and faint-red regions, corresponding to positive and negative electrostatic potential, respectively, occur about the di-iso-propyl and tri­phenyl­tin groups, respectively.

Table 3
Summary of short inter­atomic contacts (Å) in (I)

The inter­atomic distances are calculated in Crystal Explorer 17 (Turner et al., 2017[Turner, M. J., Mckinnon, J. J., Wolff, S. K., Grimwood, D. J., Spackman, P. R., Jayatilaka, D. & Spackman, M. A. (2017). Crystal Explorer 17. The University of Western Australia.]) whereby the X—H bond lengths are adjusted to their neutron values.
Contact Distance Symmetry operation
H7A⋯H12 2.09 1 − x, 1 − y, −z
H13⋯H26 2.26 1 + x, y, z
C12⋯H36 2.65 1 − x, 1 − y, −z
C13⋯H26 2.68 1 + x, y, z
C16⋯H23 2.65 1 − x, −y, 1 − z
C24⋯H34 2.68 1 − x, −y − z
[Figure 3]
Figure 3
Two views of Hirshfeld surface for (I)[link] mapped over dnorm in the range −0.085 to +1.355 (arbitrary units), highlighting short inter­atomic H⋯H and C⋯H/H⋯C contacts as diminutive red spots near the respective atoms.
[Figure 4]
Figure 4
Two views of Hirshfeld surface mapped over the electrostatic potential (the red and blue regions represent negative and positive electrostatic potentials, respectively) in the range −0.032 to +0.035 atomic units.

As reported recently (Pinto et al., 2019[Pinto, C. B., Dos Santos, L. H. R. & Rodrigues, B. L. (2019). Acta Cryst. C75, 707-716.]), in addition to analysing the nature and strength of inter­molecular inter­actions among mol­ecules, the analyses of Hirshfeld surfaces can also provide useful insight into metal–ligand/donor atom inter­actions in coordination compounds. Thus, the distance from the surface to the nearest external (de) and inter­nal (di) nuclei, the shape-index (S) and the curvedness (C) can also be plotted. Accordingly, Fig. 5[link] illustrates the Hirshfeld surfaces for the tin atom coordinated by di­thio­carbamate ligand as well as by the three phenyl groups. The close proximity of the di­thio­carbamate-S1 and phenyl-C11, C21 and C31 atoms to the tin centre are characterized as bright-red regions perpendicular to bond directions on the Hirshfeld surfaces mapped over de, Fig. 5[link](a), and dnorm, Fig. 5[link](b), whereas the comparatively weak Sn—S2 inter­action appears as the faint-red region. The longer Sn—C31 bond compared to other two Sn—C bonds, Table 1[link], is also characterized from these Hirshfeld surfaces through the curvature of the red region. The Sn—S1 and Sn—C bonds result in the large red regions on the shape-index mapping in Fig. 5[link](c) compared to a small red region for the Sn—S2 bond. On the Hirshfeld surfaces mapped over curvedness in Fig. 5[link](d), the strength of the tin–ligand bonds are characterized as the yellow areas separated by green regions. The coordination bonds for tin are also rationalized in the fingerprint plot taking into account only the Hirshfeld surface about the metal atom, Fig. 6[link]. The distribution of green points having upper short spike at de + di ∼2.4 Å and the lower, long red spike at de + di ∼2.1 Å are the result of the Sn—S and Sn—C bonds, respectively. This asymmetric distribution of points about the diagonal lacking homogeneity in colouration is due to the distorted coordination geometry about the tin atom.

[Figure 5]
Figure 5
The Hirshfeld surfaces of the tin centre in (I)[link] highlighting the coordination by the di­thio­carbamate ligand (left-hand images) and the phenyl rings (right-hand images) mapped over (a) the distance, de, external to the surface in the range −0.981 to 2.436 Å, (b) dnorm in the range −0.890 to +1.135 Å, (c) the shape-index (S) from −1.0 to +1.0 (arbitrary units) and (d) curvedness (C) from −4.0 to +0.4 (arbitrary units).
[Figure 6]
Figure 6
The fingerprint plot taking into account only the Hirshfeld surface about the tin atom.

It is clear from the the calculation of the overall two-dimensional fingerprint plot for (I)[link], Fig. 7[link](a), that the plot is asymmetric about the (de, di) diagonal in the longer distance regions and have contributions only from the inter­atomic contacts involving carbon, hydrogen and sulfur atoms, Table 4[link]. The two-dimensional fingerprint plots delineated into H⋯H, C⋯H/H⋯C, C⋯C and S⋯H/H⋯S contacts are shown in Fig. 7[link](b)–(d), respectively. In the fingerprint plot delineated into H⋯H contacts in Fig. 7[link](b), the presence of the short inter­atomic H⋯H inter­action involving the methyl-H7A and phenyl-H12 atoms is evident as the pair of short overlapping peaks at de + di ∼2.1 Å with the other short inter­atomic H⋯H contact (Table 3[link]) merged within the plot. The inter­molecular C—H⋯C inter­actions describing the localized C—H⋯π contacts are evidenced by a pronounced pair of characteristic wings around (de, di) ∼(1.2 Å, 1.8Å) and ∼(1.8 Å, 1.2 Å) in the fingerprint plot delineated into C⋯H/H⋯C contacts shown in Fig. 7[link](c). The other short inter­atomic C⋯H contacts summarized in Table 3[link] appear as the pair of forceps-like tips at de + di ∼2.7 Å. The fingerprint plot delineated into S⋯H/H⋯S contacts in Fig. 7[link](d) indicate that sulfur atoms are nearly at van der Waals separation from the symmetry-related hydrogen atoms.

Table 4
Percentage contributions of inter­atomic contacts to the Hirshfeld surface for (I)

Contact Percentage contribution
H⋯H 66.5
C⋯H/H⋯C 26.8
S⋯H/H⋯S 6.6
C⋯S/S⋯C 0.1
[Figure 7]
Figure 7
(a) A comparison of the full two-dimensional fingerprint plot for (I)[link] and those delineated into (b) H⋯H, (c) C⋯H/H⋯C and (d) S⋯H/H⋯S contacts.

5. Computational chemistry

The pairwise inter­action energies between the mol­ecules within the crystal were calculated using Crystal Explorer 17 (Turner et al., 2017[Turner, M. J., Mckinnon, J. J., Wolff, S. K., Grimwood, D. J., Spackman, P. R., Jayatilaka, D. & Spackman, M. A. (2017). Crystal Explorer 17. The University of Western Australia.]) and summing up the four energy components: electrostatic (Eele), polarization (Epol), dispersion (Edis) and exchange-repulsion (Erep). The energies were obtained using the wave function calculated at the HF/STO-3G level of theory. The strength and the nature of inter­molecular inter­actions in terms of their energies are summarized in Table 5[link]. An analysis of these reveals that the dispersion energy component makes the greatest contribution to the energies in the absence of classical hydrogen (electrostatic) bonds. Among the short inter­atomic contacts listed in Table 5[link], the inter­molecular phenyl-C—H36⋯C12 contact combined with the methyl-H7A⋯H12(phen­yl) inter­action, occurring between the same pair of symmetry-related mol­ecules, gives rise to the maximum total energy of inter­action, compared to the other inter­actions, which have almost the same energy values.

Table 5
Summary of inter­action energies (kJ mol−1) calculated for (I)

Contact R (Å) Eele Epol Edis Erep Etot
H7A⋯H12i + 6.30          
H36⋯C12i   −17.5 −7.0 −112.7 68.0 −68.8
H13⋯H26ii + 9.76          
C13⋯H26ii   −8.7 −2.0 −31.6 18.0 −24.0
C16⋯H23iii 9.46 −12.9 −2.0 −41.9 29.5 −28.2
C24⋯H34iv 10.62 −11.0 −2.8 −33.8 21.6 −26.0
Notes: Symmetry operations: (i) 1 − x, 1 − y, −z; (ii) 1 + x, y, z; (iii) 1 − x, −y, 1 − z; (iv) 1 − x, −y, −z.

The graphical representation of the magnitudes of inter­molecular energies in Fig. 8[link], i.e. energy frameworks, relies on a red, green and blue colour code scheme, reflecting the Eele, Edisp and Etot components, respectively. For the direct comparison of magnitudes of inter­action energies, their magnitudes were adjusted to same scale factor of 30 with a cut-off value of 3 kJ mol−1 within 2 × 2 × 2 unit cells. It is clear from Fig. 8[link] that the green cylinders joining the centroids of mol­ecular pairs highlighting the dispersion components make a significant contribution to the supra­molecular architecture in the crystal.

[Figure 8]
Figure 8
The energy frameworks calculated for (I)[link] viewed down the c-axis direction showing the (a) electrostatic potential force, (b) dispersion force and (c) total energy. The energy frameworks were adjusted to the same scale factor of 30 with a cut-off value of 3 kJ mol−1 within 2 × 2 × 2 unit cells.

6. Database survey

As indicated in a recent report (Mohamad et al., 2018[Mohamad, R., Awang, N., Kamaludin, N. F., Jotani, M. M. & Tiekink, E. R. T. (2018). Acta Cryst. E74, 630-637.]), there are nearly 50 crystal structures available for mol­ecules of the general formula Ph3Sn(S2CNRR′) and, with a number of these having multiple mol­ecules in the asymmetric unit, there are almost 60 independent mol­ecules. These conform to the same structural motif. An analysis of the key geometric parameters defining the mode of coordination of the di­thio­carbamate ligands showed that there were no systematic variations that could be correlated with the nature of the di­thio­carbamate ligand, i.e. R/R′ substituents. This observation is borne out by DFT calculations on different organotin systems that proved the influence of mol­ecular packing on (non-systematic) geometric parameters, including metal–sulfur/halide bonds (Buntine et al., 1998a[Buntine, M. A., Hall, V. J., Kosovel, F. J. & Tiekink, E. R. T. (1998a). J. Phys. Chem. A, 102, 2472-2482.],b[Buntine, M. A., Hall, V. J. & Tiekink, E. R. T. (1998b). Z. Kristallogr. 213, 669-678.], 1999[Buntine, M. A., Hall, V. J. & Tiekink, E. R. T. (1999). Z. Kristallogr. 214, 124-134.]). In terms of Ph3Sn(S2CNRR′), the mean Sn—Ss bond length is 2.47 Å (standard deviation = 0.013 Å) and the average Sn—Sl bond length is 3.04 Å (0.070 Å). The Sn—Ss and Sn—Sl bond lengths in (I)[link] both fall within 2σ of their respective means.

The homogeneity in the mol­ecular structures of Ph3Sn(S2CNRR′) is quite remarkable. Structural diversity is well-established for the organotin di­thio­carbamates (Tiekink, 2008[Tiekink, E. R. T. (2008). Appl. Organomet. Chem. 22, 533-550.]; Muthalib et al., 2014[Muthalib, A. F. A., Baba, I., Khaledi, H., Ali, H. M. & Tiekink, E. R. T. (2014). Z. Kristallogr. 229, 39-46.]) such as for mol­ecules of the general formula R′′2Sn(S2CNRR′)2, for which four distinct structural motifs are known (Zaldi et al., 2017[Zaldi, N. B., Hussen, R. S. D., Lee, S. M., Halcovitch, N. R., Jotani, M. M. & Tiekink, E. R. T. (2017). Acta Cryst. E73, 842-848.]). Also, the behaviour of tri­phenyl­tin di­thio­carbamates contrasts the analogous chemistry of tri­phenyl­tin carboxyl­ates (Tiekink, 1991[Tiekink, E. R. T. (1991). Appl. Organomet. Chem. 5, 1-23.]). These are often monomeric (e.g. Basu Baul et al., 2001[Basu Baul, T. S., Dhar, S., Pyke, S. M., Tiekink, E. R. T., Rivarola, E., Butcher, R. & Smith, F. E. (2001). J. Organomet. Chem. 633, 7-17.]), as for (I)[link], but, polymeric examples are known (e.g. Willem et al., 1997[Willem, R., Bouhdid, A., Mahieu, B., Ghys, L., Biesemans, M., Tiekink, E. R. T., de Vos, D. & Gielen, M. (1997). J. Organomet. Chem. 531, 151-158.]; Smyth & Tiekink, 2000[Smyth, D. R. & Tiekink, E. R. T. (2000). Z. Kristallogr. New Cryst. Struct. 215, 81-82.]). The polymeric structures occur when the carboxyl­ate ligands are bidentate bridging, leading to trans-C3O2 trigonal–bipyramidal coordination geometries for the tin atoms. This fundamental difference in structural chemistry arises as a result of the significant contribution of the 2−S2C=N+RR′ canonical form to the electronic structure of the di­thio­carbamate anion, as discussed above. The formal negative charge on each sulfur atom makes this ligand a very efficient chelator which effectively reduces the Lewis acidity of the tin centre. Far from being a curiosity, such behaviour, i.e. di­thio­carbamate ligands reducing the Lewis acidity of metal centres, when compared to related xanthate (−S2COR) and di­thio­phopshate [(−S2P(OR)2] ligands, leads to stark differences in coordination propensities in zinc-triad element 1,1-di­thiol­ate compounds, as has been reviewed recently (Tiekink, 2018a[Tiekink, E. R. T. (2018a). Crystals, 8, article no. 292.],b[Tiekink, E. R. T. (2018b). Crystals, 8, article no. 18.]).

7. Synthesis and crystallization

All chemicals and solvents were used as purchased without purification. The melting point was determined using an automated melting point apparatus (MPA 120 EZ-Melt). Carbon, hydrogen, nitro­gen and sulfur analyses were performed on a Leco CHNS-932 Elemental Analyzer.

Di-iso-propyl­amine (Aldrich; 1.41 ml, 10 mmol) dissolved in ethanol (30 ml) was stirred under ice-bath conditions at 277 K for 20 mins. A 25% ammonia solution (1–2 ml) was added to provide basic conditions. Then, a cold ethano­lic solution of carbon di­sulfide (0.60 ml, 10 mmol) was added dropwise into the solution followed by stirring for 2 h. After that, tri­phenyl­tin(IV) chloride (Merck; 3.85 g, 10 mmol) dissolved in ethanol (20–30 ml) was added dropwise into the solution followed by further stirring for 2 h. The precipitate that formed was filtered and washed a few times with cold ethanol to remove impurities. Finally, the colourless precipitate was dried in a desiccator. Recrystallization was carried out by dissolving the compound in a chloro­form and ethanol mixture (1:1 v/v). This solution was allowed to slowly evaporate at room temperature yielding colourless slabs of (I)[link]. Yield: 47%, m. p.: 437.8–440.2 K. Elemental analysis: Calculated (%): C 57.07, H 5.51, N 2.66, S 12.19. Found (%): C 57.39, H 5.31, N 2.48, S 11.26.

8. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 6[link]. Carbon-bound H atoms were placed in calculated positions (C—H = 0.95–1.00 Å) and were included in the refinement in the riding model approximation, with Uiso(H) set to 1.2–1.5Ueq(C).

Table 6
Experimental details

Crystal data
Chemical formula [Sn(C6H5)3(C7H14NS2)]
Mr 526.30
Crystal system, space group Triclinic, P[\overline{1}]
Temperature (K) 100
a, b, c (Å) 9.7572 (1), 11.7030 (2), 11.7602 (2)
α, β, γ (°) 74.419 (1), 80.114 (1), 67.285 (2)
V (Å3) 1189.71 (4)
Z 2
Radiation type Cu Kα
μ (mm−1) 10.25
Crystal size (mm) 0.12 × 0.11 × 0.08
 
Data collection
Diffractometer Rigaku XtaLAB Synergy Dualflex AtlasS2
Absorption correction Gaussian (CrysAlis PRO; Rigaku OD, 2018[Rigaku OD (2018). CrysAlis PRO. Rigaku Oxford Diffraction Corporation, Yarnton, England.])
Tmin, Tmax 0.840, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections 28219, 4248, 4231
Rint 0.022
(sin θ/λ)max (Å−1) 0.597
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.015, 0.040, 1.00
No. of reflections 4248
No. of parameters 266
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.36, −0.44
Computer programs: CrysAlis PRO (Rigaku OD, 2018[Rigaku OD (2018). CrysAlis PRO. Rigaku Oxford Diffraction Corporation, Yarnton, England.]), SHELXS (Sheldrick, 2015a[Sheldrick, G. M. (2015a). Acta Cryst. A71, 3-8.]), SHELXL2014 (Sheldrick, 2015b[Sheldrick, G. M. (2015b). Acta Cryst. C71, 3-8.]), ORTEP-3 for Windows (Farrugia, 2012[Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849-854.]), DIAMOND (Brandenburg, 2006[Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany.]) and publCIF (Westrip, 2010[Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925.]).

Supporting information

CCDC reference: 1952056

Crystal structure: contains datablocks I, global. DOI: https://doi.org/10.1107/S2056989019012490/hb7851sup1.cif

Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989019012490/hb7851Isup2.hkl

checkCIF report


Computing details top

Data collection: CrysAlis PRO (Rigaku OD, 2018); cell refinement: CrysAlis PRO (Rigaku OD, 2018); data reduction: CrysAlis PRO (Rigaku OD, 2018); program(s) used to solve structure: SHELXS (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).

(N,N-Diisopropyldithiocarbamato)triphenyltin(IV) top
Crystal data top
[Sn(C6H5)3(C7H14NS2)]Z = 2
Mr = 526.30F(000) = 536
Triclinic, P1Dx = 1.469 Mg m−3
a = 9.7572 (1) ÅCu Kα radiation, λ = 1.54184 Å
b = 11.7030 (2) ÅCell parameters from 24601 reflections
c = 11.7602 (2) Åθ = 3.9–76.3°
α = 74.419 (1)°µ = 10.25 mm−1
β = 80.114 (1)°T = 100 K
γ = 67.285 (2)°Prism, colourless
V = 1189.71 (4) Å30.12 × 0.11 × 0.08 mm
Data collection top
Rigaku XtaLAB Synergy Dualflex AtlasS2
diffractometer		4231 reflections with I > 2σ(I)
Detector resolution: 5.2558 pixels mm-1Rint = 0.022
ω scansθmax = 67.1°, θmin = 3.9°
Absorption correction: gaussian
(CrysAlis PRO; Rigaku OD, 2018)		h = −11→11
Tmin = 0.840, Tmax = 1.000k = −13→13
28219 measured reflectionsl = −13→14
4248 independent reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.015Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.040H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.026P)2 + 0.5977P]
where P = (Fo2 + 2Fc2)/3
4248 reflections(Δ/σ)max = 0.001
266 parametersΔρmax = 0.36 e Å−3
0 restraintsΔρmin = −0.44 e Å−3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Sn0.39008 (2)0.31848 (2)0.21713 (2)0.01326 (4)
S10.19166 (4)0.50402 (3)0.11108 (3)0.01639 (8)
S20.17439 (4)0.47895 (4)0.36811 (3)0.01880 (8)
N1−0.00996 (14)0.67737 (12)0.22420 (12)0.0176 (3)
C10.10482 (15)0.56682 (14)0.23615 (14)0.0157 (3)
C2−0.08409 (18)0.72965 (17)0.33124 (16)0.0259 (4)
H2−0.03550.66550.40170.031*
C3−0.24831 (19)0.74782 (18)0.34878 (17)0.0301 (4)
H3A−0.30090.81470.28400.045*
H3B−0.29020.77230.42430.045*
H3C−0.26000.66820.34930.045*
C4−0.0574 (2)0.8507 (2)0.3257 (2)0.0454 (5)
H4A0.04980.83420.31410.068*
H4B−0.09760.87880.39980.068*
H4C−0.10730.91700.25940.068*
C5−0.07259 (17)0.75964 (14)0.11003 (14)0.0196 (3)
H5−0.15460.83540.13230.023*
C6−0.1481 (2)0.69886 (17)0.05404 (17)0.0273 (4)
H6A−0.20250.7616−0.01220.041*
H6B−0.21800.66910.11320.041*
H6C−0.07270.62670.02500.041*
C70.03571 (19)0.81240 (16)0.02586 (16)0.0278 (4)
H7A0.11470.7437−0.00560.042*
H7B0.07980.84970.06830.042*
H7C−0.01730.8779−0.03960.042*
C110.55885 (16)0.34926 (13)0.28704 (13)0.0147 (3)
C120.68313 (16)0.35637 (15)0.21077 (14)0.0191 (3)
H120.69180.34350.13310.023*
C130.79426 (17)0.38199 (16)0.24707 (15)0.0228 (3)
H130.87610.39020.19310.027*
C140.78624 (17)0.39561 (15)0.36188 (16)0.0220 (3)
H140.86330.41150.38720.026*
C150.66454 (17)0.38591 (14)0.43962 (15)0.0195 (3)
H150.65940.39340.51880.023*
C160.55062 (16)0.36527 (14)0.40185 (14)0.0167 (3)
H160.46610.36200.45460.020*
C210.31244 (16)0.16861 (14)0.31013 (13)0.0161 (3)
C220.40747 (18)0.05244 (15)0.37020 (15)0.0215 (3)
H220.50880.04030.37390.026*
C230.3558 (2)−0.04562 (16)0.42466 (16)0.0256 (4)
H230.4216−0.12390.46610.031*
C240.20910 (19)−0.03021 (16)0.41896 (15)0.0227 (3)
H240.1740−0.09750.45650.027*
C250.11378 (18)0.08408 (17)0.35814 (16)0.0255 (4)
H250.01320.09500.35290.031*
C260.16529 (18)0.18255 (16)0.30497 (15)0.0234 (3)
H260.09890.26100.26430.028*
C310.50078 (15)0.25703 (14)0.05537 (14)0.0162 (3)
C320.55917 (18)0.12811 (15)0.05353 (16)0.0229 (3)
H320.55510.06680.12460.027*
C330.62313 (19)0.08811 (16)−0.05083 (17)0.0282 (4)
H330.66220.0000−0.05050.034*
C340.63013 (19)0.17592 (18)−0.15492 (16)0.0272 (4)
H340.67320.1483−0.22620.033*
C350.57407 (19)0.30455 (17)−0.15524 (15)0.0249 (3)
H350.57900.3653−0.22650.030*
C360.51064 (17)0.34382 (15)−0.05060 (14)0.0197 (3)
H360.47310.4319−0.05120.024*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Sn0.01301 (6)0.01352 (6)0.01339 (6)−0.00463 (4)−0.00068 (4)−0.00360 (4)
S10.01698 (17)0.01653 (17)0.01422 (18)−0.00254 (13)−0.00113 (13)−0.00638 (13)
S20.01615 (17)0.02318 (18)0.01490 (18)−0.00338 (14)−0.00031 (13)−0.00680 (14)
N10.0147 (6)0.0194 (6)0.0190 (7)−0.0035 (5)−0.0015 (5)−0.0083 (5)
C10.0122 (6)0.0189 (7)0.0187 (8)−0.0070 (6)0.0006 (5)−0.0076 (6)
C20.0201 (8)0.0305 (9)0.0226 (9)0.0009 (7)0.0008 (6)−0.0153 (7)
C30.0253 (9)0.0306 (9)0.0286 (10)−0.0063 (7)0.0080 (7)−0.0087 (7)
C40.0423 (11)0.0616 (14)0.0523 (14)−0.0251 (10)0.0112 (10)−0.0445 (12)
C50.0184 (7)0.0170 (7)0.0221 (8)−0.0032 (6)−0.0043 (6)−0.0053 (6)
C60.0278 (9)0.0265 (9)0.0297 (10)−0.0086 (7)−0.0116 (7)−0.0057 (7)
C70.0280 (9)0.0232 (8)0.0295 (10)−0.0081 (7)0.0028 (7)−0.0061 (7)
C110.0136 (6)0.0116 (6)0.0173 (8)−0.0025 (5)−0.0032 (5)−0.0026 (5)
C120.0153 (7)0.0211 (7)0.0178 (8)−0.0027 (6)−0.0015 (6)−0.0048 (6)
C130.0134 (7)0.0265 (8)0.0256 (9)−0.0058 (6)0.0005 (6)−0.0045 (7)
C140.0154 (7)0.0208 (8)0.0312 (9)−0.0049 (6)−0.0071 (6)−0.0068 (7)
C150.0217 (7)0.0157 (7)0.0200 (8)−0.0025 (6)−0.0053 (6)−0.0065 (6)
C160.0159 (7)0.0142 (7)0.0178 (8)−0.0031 (5)−0.0009 (6)−0.0038 (6)
C210.0192 (7)0.0169 (7)0.0139 (7)−0.0078 (6)0.0014 (6)−0.0058 (6)
C220.0210 (8)0.0211 (8)0.0230 (8)−0.0084 (6)−0.0041 (6)−0.0029 (6)
C230.0315 (9)0.0184 (8)0.0249 (9)−0.0081 (7)−0.0041 (7)−0.0019 (7)
C240.0314 (9)0.0233 (8)0.0192 (8)−0.0168 (7)0.0075 (6)−0.0094 (6)
C250.0204 (8)0.0312 (9)0.0291 (9)−0.0140 (7)0.0047 (7)−0.0104 (7)
C260.0182 (8)0.0229 (8)0.0264 (9)−0.0060 (6)−0.0006 (6)−0.0036 (7)
C310.0131 (7)0.0189 (7)0.0179 (8)−0.0054 (6)−0.0003 (5)−0.0071 (6)
C320.0225 (8)0.0194 (8)0.0260 (9)−0.0062 (6)0.0008 (6)−0.0074 (7)
C330.0265 (8)0.0225 (8)0.0389 (10)−0.0074 (7)0.0034 (7)−0.0180 (8)
C340.0241 (8)0.0378 (10)0.0267 (9)−0.0127 (7)0.0062 (7)−0.0212 (8)
C350.0270 (8)0.0312 (9)0.0189 (8)−0.0134 (7)0.0027 (6)−0.0079 (7)
C360.0201 (7)0.0201 (8)0.0201 (8)−0.0071 (6)0.0001 (6)−0.0078 (6)
Geometric parameters (Å, º) top
Sn—S12.4792 (4)C12—H120.9500
Sn—S22.9264 (4)C13—C141.387 (3)
Sn—C112.1446 (14)C13—H130.9500
Sn—C212.1349 (15)C14—C151.391 (2)
Sn—C312.1754 (15)C14—H140.9500
C1—S11.7587 (15)C15—C161.388 (2)
C1—S21.7006 (16)C15—H150.9500
C1—N11.336 (2)C16—H160.9500
C5—N11.495 (2)C21—C261.391 (2)
C2—N11.497 (2)C21—C221.394 (2)
C2—C31.517 (2)C22—C231.387 (2)
C2—C41.519 (3)C22—H220.9500
C2—H21.0000C23—C241.383 (2)
C3—H3A0.9800C23—H230.9500
C3—H3B0.9800C24—C251.385 (3)
C3—H3C0.9800C24—H240.9500
C4—H4A0.9800C25—C261.387 (2)
C4—H4B0.9800C25—H250.9500
C4—H4C0.9800C26—H260.9500
C5—C71.515 (2)C31—C321.397 (2)
C5—C61.519 (2)C31—C361.396 (2)
C5—H51.0000C32—C331.391 (3)
C6—H6A0.9800C32—H320.9500
C6—H6B0.9800C33—C341.382 (3)
C6—H6C0.9800C33—H330.9500
C7—H7A0.9800C34—C351.388 (3)
C7—H7B0.9800C34—H340.9500
C7—H7C0.9800C35—C361.390 (2)
C11—C121.395 (2)C35—H350.9500
C11—C161.397 (2)C36—H360.9500
C12—C131.388 (2)
C21—Sn—C11119.87 (6)C12—C11—C16118.47 (14)
C21—Sn—C31102.73 (6)C12—C11—Sn117.04 (11)
C11—Sn—C31103.38 (5)C16—C11—Sn124.47 (11)
C21—Sn—S1112.27 (4)C13—C12—C11120.79 (15)
C11—Sn—S1119.12 (4)C13—C12—H12119.6
C31—Sn—S193.24 (4)C11—C12—H12119.6
C21—Sn—S288.10 (4)C14—C13—C12120.24 (15)
C11—Sn—S286.68 (4)C14—C13—H13119.9
C31—Sn—S2158.41 (4)C12—C13—H13119.9
S1—Sn—S265.260 (11)C13—C14—C15119.49 (15)
C1—S1—Sn95.87 (5)C13—C14—H14120.3
C1—S2—Sn82.36 (5)C15—C14—H14120.3
C1—N1—C5125.74 (13)C14—C15—C16120.21 (15)
C1—N1—C2119.61 (13)C14—C15—H15119.9
C5—N1—C2114.62 (12)C16—C15—H15119.9
N1—C1—S2123.73 (12)C15—C16—C11120.71 (14)
N1—C1—S1119.94 (12)C15—C16—H16119.6
S2—C1—S1116.33 (8)C11—C16—H16119.6
N1—C2—C3111.83 (14)C26—C21—C22118.14 (14)
N1—C2—C4110.44 (15)C26—C21—Sn119.77 (11)
C3—C2—C4112.51 (15)C22—C21—Sn121.95 (11)
N1—C2—H2107.3C23—C22—C21120.74 (15)
C3—C2—H2107.3C23—C22—H22119.6
C4—C2—H2107.3C21—C22—H22119.6
C2—C3—H3A109.5C24—C23—C22120.43 (15)
C2—C3—H3B109.5C24—C23—H23119.8
H3A—C3—H3B109.5C22—C23—H23119.8
C2—C3—H3C109.5C23—C24—C25119.52 (15)
H3A—C3—H3C109.5C23—C24—H24120.2
H3B—C3—H3C109.5C25—C24—H24120.2
C2—C4—H4A109.5C24—C25—C26119.94 (15)
C2—C4—H4B109.5C24—C25—H25120.0
H4A—C4—H4B109.5C26—C25—H25120.0
C2—C4—H4C109.5C21—C26—C25121.22 (15)
H4A—C4—H4C109.5C21—C26—H26119.4
H4B—C4—H4C109.5C25—C26—H26119.4
N1—C5—C7113.59 (13)C32—C31—C36117.70 (14)
N1—C5—C6112.50 (13)C32—C31—Sn120.43 (12)
C7—C5—C6114.30 (15)C36—C31—Sn121.81 (11)
N1—C5—H5105.1C33—C32—C31120.96 (16)
C7—C5—H5105.1C33—C32—H32119.5
C6—C5—H5105.1C31—C32—H32119.5
C5—C6—H6A109.5C34—C33—C32120.27 (16)
C5—C6—H6B109.5C34—C33—H33119.9
H6A—C6—H6B109.5C32—C33—H33119.9
C5—C6—H6C109.5C33—C34—C35119.89 (16)
H6A—C6—H6C109.5C33—C34—H34120.1
H6B—C6—H6C109.5C35—C34—H34120.1
C5—C7—H7A109.5C36—C35—C34119.53 (16)
C5—C7—H7B109.5C36—C35—H35120.2
H7A—C7—H7B109.5C34—C35—H35120.2
C5—C7—H7C109.5C35—C36—C31121.64 (15)
H7A—C7—H7C109.5C35—C36—H36119.2
H7B—C7—H7C109.5C31—C36—H36119.2
C5—N1—C1—S2178.33 (11)C13—C14—C15—C16−1.3 (2)
C2—N1—C1—S20.0 (2)C14—C15—C16—C112.4 (2)
C5—N1—C1—S1−2.2 (2)C12—C11—C16—C15−0.9 (2)
C2—N1—C1—S1179.49 (11)Sn—C11—C16—C15−179.42 (11)
Sn—S2—C1—N1−176.75 (13)C26—C21—C22—C23−0.9 (2)
Sn—S2—C1—S13.78 (7)Sn—C21—C22—C23−176.59 (13)
Sn—S1—C1—N1176.06 (11)C21—C22—C23—C240.8 (3)
Sn—S1—C1—S2−4.44 (8)C22—C23—C24—C250.1 (3)
C1—N1—C2—C3−120.82 (16)C23—C24—C25—C26−0.9 (3)
C5—N1—C2—C360.70 (19)C22—C21—C26—C250.1 (2)
C1—N1—C2—C4113.06 (18)Sn—C21—C26—C25175.91 (13)
C5—N1—C2—C4−65.42 (18)C24—C25—C26—C210.8 (3)
C1—N1—C5—C7−64.0 (2)C36—C31—C32—C33−0.8 (2)
C2—N1—C5—C7114.38 (15)Sn—C31—C32—C33176.56 (12)
C1—N1—C5—C667.84 (19)C31—C32—C33—C340.1 (3)
C2—N1—C5—C6−113.79 (15)C32—C33—C34—C350.5 (3)
C16—C11—C12—C13−1.6 (2)C33—C34—C35—C36−0.3 (3)
Sn—C11—C12—C13176.97 (12)C34—C35—C36—C31−0.4 (2)
C11—C12—C13—C142.7 (2)C32—C31—C36—C351.0 (2)
C12—C13—C14—C15−1.3 (2)Sn—C31—C36—C35−176.35 (12)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C34—H34···C24i0.952.823.757 (3)171
Symmetry code: (i) −x+1, −y, −z.
Summary of short interatomic contacts (Å) in (I) top
The interatomic distances are calculated in Crystal Explorer 17 (Turner et al., 2017) whereby the X—H bond lengths are adjusted to their neutron values.
ContactDistanceSymmetry operation
H7A···H122.091 - x, 1 - y, -z
H13···H262.261 + x, y, z
C12···H362.651 - x, 1 - y, -z
C13···H262.681 + x, y, z
C16···H232.651 - x, -y, 1 - z
C24···H342.681 - x, -y -z
Percentage contributions of interatomic contacts to the Hirshfeld surface for (I) top
ContactPercentage contribution
H···H66.5
C···H/H···C26.8
S···H/H···S6.6
C···S/S···C0.1
Summary of interaction energies (kJ mol-1) calculated for (I) top
ContactR (Å)EeleEpolEdisErepEtot
H7A···H12i +6.30
H36···C12i6.30-17.5-7.0-112.768.0-68.8
H13···H26ii +9.76
C13···H26ii9.76-8.7-2.0-31.618.0-24.0
C16···H23iii9.46-12.9-2.0-41.929.5-28.2
C24···H34iv10.62-11.0-2.8-33.821.6-26.0
Notes: Symmetry operations: (i) 1 - x, 1 - y, -z; (ii) 1 + x, y, z; (iii) 1 - x, -y, 1 - z; (iv) 1 - x, -y, -z.
 

Footnotes

‡Additional correspondence author, e-mail: awang_normah@yahoo.com.

Acknowledgements

We gratefully acknowledge the Faculty of Health Sciences and the Faculty of Science and Technology of the Universiti Kebangsaan Malaysia for providing essential laboratory facilities and for technical support from the laboratory assistants. The Universiti Malaysia Terengganu is thanked for the elemental analysis. The authors also thank the Research Centre of Crystalline Materials X-ray crystallography laboratory for the X-ray intensity data.

Funding information

This work was supported by the Fundamental Research Grant Scheme (FRGS/1/2018/STG01/UKM/02/20) awarded by the Ministry of Education (MOE). Crystallographic research at Sunway University is supported by Sunway University Sdn Bhd (grant No. STR-RCTR-RCCM-001-2019).

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ISSN: 2056-9890
Volume 75| Part 10| October 2019| Pages 1479-1485
https://doi.org/10.1107/S2056989019012490
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