1. Chemical context
α-Hydroxy carboxylic acids are indispensable players in plant and animal metabolism, and many of these substances are commercially important chemicals, because of their wide use in chemical industries and as pharmaceuticals, skin-care agents, or nutritional supplements (Bhalla et al., 2013
). 2-Hydroxy-4-(methylsulfanyl)butanoic acid (I) is a natural precursor in methionine biosynthesis, and, for decades, synthetic HMTBA has been used on an industrial scale as a supplement to animal feeds in order to boost methionine production, particularly in farmed poultry (Zhang et al., 2015
). In spite of its large-scale manufacture and use, commercial HMTBA is supplied as a brown, syrupy, racemic mixture, and it has not been reported to crystallize, even when isolated in chromatographically and enantiomerically pure preparations (Busto et al., 2014
). One possible reason is that HMTBA readily forms dimeric and trimeric condensation products (Koban & Koberstein, 1984
) which, along with the deliquescent behavior, may impede its crystallization. Crystal structures of free aliphatic α-hydroxy carboxylic acids are rare, as a result of their propensity to oligomerize. Metal salts provide a means for stabilization of the α-hydroxy carboxylate monomers, and structures of two HMTBA metal salts, Cu[(R,S)-HMTBA]2 (CCDC 1018852; Yang et al., 2015
) and Zn[(R,S)-HMTBA]2 (CCDC 671417; Predieri et al., 2009
), have been solved by X-ray diffraction. In our attempts to separate monomeric and oligomeric forms of HMTBA, we have successfully isolated a high-purity crystalline sample of (I), shown in Fig. 1
, and report here its characterization by X-ray diffraction.
| Figure 1 Preparation of crystals of (I). (a) Sublimation apparatus used for short-path distillation, (b) Crystals of (R,S)-HMTBA monomer formed on sublimator's cold finger. |
2. Structural commentary
(R,S)-HMTBA crystallizes in the monoclinic space group P21/c; the asymmetric unit consists of two molecules in non-equivalent conformations, (IA) and (IB) (Table 1
). The ORTEP views of the molecules and numbering of the atoms are shown in Figs. 2
and 3
. Bond lengths and valence angles in (I) are within ranges expected for the given structure. The C1–C5 backbone in (R)-(IA) is in the trans, trans, gauche+ (t, t, g+) conformation, with the chain of atoms C1A through S1A located in one plane [maximum deviation 0.144 (1) Å for C3A]. In the crystal of (R,S)-HMTBA copper salt (Yang et al., 2015
), a similar (t, t, g+) backbone rotamer exists in the (S)-HMTBA molecule. Likewise, the respective (t, t, g+) conformation of the L-methionine side chain was found in the α-isoform of DL-Met crystal (CCDC 1028063; Görbitz et al., 2014
). The backbone conformation in (R)-(IB) is the gauche+, trans, gauche+ rotamer. An identical (g+, t, g+) conformation was adopted by (R)-HMTBA, molecule C, which is coordinated to the zinc ion in the crystal of (R,S)-HMTBA zinc salt trihydrate (Predieri et al., 2009
). The conformation around the C1—C2 bond in (R)-(IB) is close to eclipsed, in respect to the O1B and O3B atoms, with a O3B—C2B—C1B—O1B torsion angle of −10.81 (19)°. A similar spatial arrangement of the O1 and O3 atoms was reported in the aforementioned copper and zinc salts of HMTBA (Table 1
), where simultaneous coordination of the carboxylate and hydroxyl oxygen atoms to the metal ions provided for the formation of nearly flat five-membered chelate rings (Yang et al., 2015
; Predieri et al., 2009
). In crystal structures of the simplest α-hydroxy carboxylic acids, glycolic acid (CCDC 1169248; Pijper, 1971
) and L(+)-lactic acid (CCDC 1303177; Schouten et al., 1994
), the molecular fragments including non-hydrogen atoms of the hydroxyl and carboxyl groups are also nearly flat (Table 1
).
| C1—C2—C3—C4 | C2—C3—C4—S1 | C3—C4—S1—C5 | O1—C1—C2—O3/N1b | Ref. | (IA)a | 179.4 (1) | −164.2 (1) | −62.2 (2) | −27.8 (2) | This work | (IB)a | −62.6 (2) | −178.2 (1) | −69.8 (2) | 10.8 (2) | This work | Cu(HMTBA)2 a | 175.0 (4) | 164.9 (3) | 63.2 (5) | −14.2 (5) | (Yang et al., 2015 ) | Zn(HMTBA)2: molecule A (S) | −60.6 (7) | −157.5 (4) | −58.8 (6) | 3.9 (6) | (Predieri et al., 2009 ) | molecule B (R) | 64.6 (7) | −76.7 (7) | −68.2 (7) | 9.5 (6) | | molecule C (R) | 60.0 (7) | 173.4 (5) | 66.2 (7) | 9.7 (6) | | molecule D (S) | −57.7 (9) | −174.7 (6) | −122.9 (8) | −1.3 (7) | | L-Met: molecule A | 71.8 (3) | 171.6 (3) | −178.5 (3) | −16.3 (2) | (Dalhus & Görbitz, 1996 ) | molecule B | 74.1 (3) | 71.5 (3) | 72.4 (3) | −32.4 (2) | | α-DL-Met a | −178.0 (2) | 176.7 (2) | 69.4 (3) | −29.4 (3) | (Görbitz et al., 2014 ) | β-DL-Met a | −173.6 (2) | −179.2 (1) | −175.0 (2) | −32.6 (2) | (Alagar et al., 2005 ) | L-(+)-lactic acid | | | | 7.6 (1) | (Schouten et al., 1994 ) | glycolic acid: molecule A | | | | −6.16 (2) | (Pijper, 1971 ) | molecule B | | | | −2.93 (2) | | Notes: (a) Signs of the angle values are given for the (S)-enantiomer; (b) N1 in methionine. | |
| Figure 2 The atomic numbering and displacement ellipsoids at 50% probability level drawn for molecule (IA). |
| Figure 3 The atomic numbering and displacement ellipsoids at 50% probability level drawn for molecule (IB). |
3. Supramolecular features
The crystal structure of (I) consists of alternating polar and non-polar sheets running along the bc plane (Fig. 4
) and containing short O—H⋯O contacts within the polar layers (Fig. 4
and Table 2
). Such a double-layered arrangement is typical for crystal structures of aliphatic L-α-amino acids and many other polar molecules, and these are present in all reference structures of both HMTBA metal salts and methionine listed in Table 1
. Within the polar sheets, the basic hydrogen-bonding pattern features infinite homodromic chains of hydrogen bonds spiraling along the b-axis direction (Fig. 5
). The chains are linked through bifurcated hydrogen bonding that involves the hydroxyl O3B—H3B donor group and the carboxylate O1A acceptor. One can recognize three basic motifs in the hydrogen-bonding pattern (in accordance with the topological notation system by Bernstein et al., 1995
): the C44(12) motif forms homodromic infinite chains, which link similarly oriented molecules; the small R22(4) ring and the large homodromic R88(24) ring, which are formed by the O3B—H3B⋯O1A links and the homodromic infinite chains that run along the b axis in opposite directions and are located on the opposite `half-sheets' of the polar layer. The resulting pattern of conjugated rings is shown in Fig. 5
b: it represents one of two symmetrical, in respect to the twofold screw along the b axis, systems of hydrogen bonds that penetrate the polar layers.
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A | O3A—H3A⋯O1B | 0.736 (19) | 2.013 (19) | 2.7044 (14) | 156.4 (19) | O3B—H3B⋯O1A | 0.77 (2) | 2.246 (19) | 2.8480 (14) | 135.6 (18) | O3B—H3B⋯O1Ai | 0.77 (2) | 2.325 (19) | 2.9048 (14) | 132.9 (18) | O2A—H2A⋯O3Aii | 0.89 (2) | 1.71 (2) | 2.5995 (14) | 172.7 (18) | O2B—H2B⋯O3Biii | 0.86 (2) | 1.79 (2) | 2.6493 (14) | 172.6 (19) | Symmetry codes: (i) -x+1, -y+1, -z; (ii) ; (iii) . | |
| Figure 4 The molecular packing in (I). Color code for crystallographic axes: red − a, green − b, blue − c. Highlighted are hydrophilic regions in the crystal. |
| Figure 5 Hydrogen bonding in crystal structure of (I). (a) A view of the unit-cell contents shown in projection down the a axis. Hydrogen bonds are shown as cyan dotted lines. (b) Hydrogen-bonding patterns in the crystal structure of (I), as viewed down the a axis. |
In addition to the `classical' O—H⋯O hydrogen bonds, there is one intermolecular C2B—HA⋯O2A contact (Fig. 6
and Table 3
) in the crystal structure of (I) that is shorter than the sum of the van der Waals radii. The Hirshfeld surface analysis (CrystalExplorer17.5; Spackman & Jayatilaka, 2009
), however, reveals that the C—H⋯O contacts do not contribute significantly to the crystal packing forces, but that a major proportion, over 63% for (IA) and over 68% for (IB), of the intermolecular contacts in the crystal structure of (I) is provided by non- or low-polar H⋯H and H⋯S interactions (Fig. 7
and Table 4
). Compared to other aforementioned structures (Table 4
), the relative contributions of the polar and non-polar interactions in (I) are similar to those found in HMTBA metal salts. The relative contribution of the polar component in methionine structures is somewhat higher, possibly because of the higher number of heteroatom-bonded hydrogen atoms, three, as compared to only two such protons present in molecules of (I).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A | C2B—H2BA⋯O2Ai | 0.934 (17) | 2.630 (17) | 3.4068 (16) | 141.1 (13) | Symmetry code: (i) x, 1 + y, z. | |
| Backbone rotamer a | H⋯H | S⋯H | O⋯H | Other | | | | HMTBA | | | | | O⋯O; | C⋯O; | C⋯H; | S⋯S | (IA) | ttg− | 48.9 | 14.3 | 32.3 | 1.7; | 1.7; | 0.9; | 0.1 | (IB) | g−tg− | 50.4 | 18.2 | 28.5 | 1.0; | 1.7; | 0.2; | 0.1 | | | | | | | | | | | | | | | O⋯O; | C⋯O; | C⋯H; | Cu⋯O | Cu(HMTBA)2 | ttg+ | 44.0 | 18.0 | 25.2 | 2.9; | 1.7; | 1.3; | 6.9 | | | | | | | | | | Zn(HMTBA)2 | | | | | O⋯O; | C⋯H; | S⋯S; | Zn⋯O | molecule A (S) | g−tg− | 48.4 | 18.4 | 22.0 | 2.4; | 1.1; | 0.3; | 7.5 | molecule B (R) | g+g−g− | 49.2 | 13.9 | 28.0 | 0.9; | 1.0; | 1.0; | 4.9 | molecule C (R) | g+tg+ | 48.2 | 15.7 | 28.7 | 0.8; | 0.8; | 0.3; | 5.0 | | | | | | | | | | L-Met | | | | | O⋯O; | C⋯O; | C⋯H; | C⋯C | molecule A | g+tt | 48.3 | 14.9 | 34.7 | 0.1; | 0.6; | 0.6; | 0.5 | molecule B | g + g+g+ | 46.7 | 15.1 | 35.6 | 0.5; | 0.6; | 0.6; | 0.5 | | | | | | | | | | β-DL-Met | ttt | 48.7 | 14.6 | 35.6 | 0.3; | 0.4; | 1.3 | | Note: (a) Refer to Table 1 for chirality of the molecules and the actual torsion-angle values. | |
| Figure 6 Views of the Hirshfeld surface for (a) molecule (IA) and (b) molecule (IB), mapped over the dnorm in the range 0.7691 to 1.1756 a.u. with the blue-to-red color palette reflecting distances from a point on the surface to the closest nuclei. The molecular fragments involved in the shortest O—H⋯O and C—H⋯O interactions are shown. |
| Figure 7 The two-dimensional fingerprint plots for (a)–(c) molecule (IA) and (d)–(f) molecule (IB), delineated into specific contacts: (a,d) O⋯H/H⋯O (32.3% and 28.5% contribution to the Hirshfeld surfaces of the respective molecules); (b,e) H⋯H (48.9 and 50.4%); (c,f) H⋯S/S⋯H (14.3 and 18.2%). |
4. Database survey
Search of SciFinder, Google Scholar, and the Cambridge Structural Database (version 5.40, 2019 data update 3; Groom et al., 2016
), by both structure and chemical names, revealed no previous structural description of 2-hydroxy-4-(methylsulfanyl)butanoic acid in the solid state. Only two HMTBA structures, both of which are metal salts, Cu[(R,S)-HMTBA]2 (CCDC 1018852, Yang et al., 2015
) and Zn[(R,S)-HMTBA]2 (CCDC 671417, Predieri et al., 2009
), have been reported. The most closely related structure to (I) is methionine, for which a number of crystallographic studies have been published and these are referenced in Table 1
. In addition to the structural features outlined in Tables 1
and 4
, other similarities to (I) include L-methionine crystallizing in the monoclinic space group P21 (CCDC 1207980, LMETON02; CCDC 1207981, LMETON10; Torii & Iitaka, 1973
; Dalhus & Görbitz, 1996
). The asymmetric unit in the crystal structure of L-Met also contains two conformationally unequal molecules.
5. Synthesis and crystallization
Purely monomeric HMTBA in its free acid form is not commercially available because of the known propensity of α-hydroxy carboxylic acids to oligomerize when concentrated (Koban & Koberstein, 1984
); thus, we have evaluated the composition of a commercially available (R,S)-2-hydroxy-4-(methylsulfanyl)butanoic acid (TCI America) as having 65-72% HMTBA monomer, 2.7–4.5% of its linear dimer, 0.14–0.35% of the linear trimer, and 28–35% water. A pure, anhydrous sample of racemic HMTBA monomer was prepared by employing a mild, short-path distillation technique that utilizes a sublimation apparatus (Fig. 1
a), half submerged in an ethylene glycol bath that was maintained at 383 K. After 72 h, while under vacuum (10 torr) and the cold finger kept at 277 K, large colorless prisms of neat (I) were formed on the sublimator's condenser (Fig. 1
b), which melted at 302.5 K.
6. Refinement
Crystal data, data collection and structure refinement details are summarized in Table 5
. O-bound H atoms were located from the difference map and those bonded to C were placed in calculated positions. The coordinates of all H atoms were refined freely while the thermal parameters were constrained to ride on the carrier atoms, Uiso(H) = 1.2–1.5Ueq(C,O).
Crystal data | Chemical formula | C5H10O3S | Mr | 150.19 | Crystal system, space group | Monoclinic, P21/c | Temperature (K) | 100 | a, b, c (Å) | 16.0940 (14), 8.8747 (8), 10.558 (1) | β (°) | 105.654 (3) | V (Å3) | 1452.1 (2) | Z | 8 | Radiation type | Mo Kα | μ (mm−1) | 0.38 | Crystal size (mm) | 0.34 × 0.25 × 0.07 | | Data collection | Diffractometer | Bruker VENTURE CMOS area detector | Absorption correction | Multi-scan (AXScale; Bruker, 2017 ) | Tmin, Tmax | 0.653, 0.746 | No. of measured, independent and observed [I > 2σ(I)] reflections | 37191, 4437, 3474 | Rint | 0.071 | (sin θ/λ)max (Å−1) | 0.715 | | Refinement | R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.106, 1.05 | No. of reflections | 4437 | No. of parameters | 223 | H-atom treatment | Only H-atom coordinates refined | Δρmax, Δρmin (e Å−3) | 0.53, −0.47 | Computer programs: APEX3 and SAINT (Bruker, 2017 ), SHELXT2014 (Sheldrick, 2015a ), SHELXL2017 (Sheldrick, 2015b ), Mercury (Macrae et al., 2020 ), OLEX2 (Dolomanov et al., 2009 ) and publCIF (Westrip, 2010 ). | |
Supporting information
Data collection: APEX3 and SAINT (Bruker, 2017); cell refinement: APEX3 and SAINT (Bruker, 2017); data reduction: APEX3 and SAINT (Bruker, 2017); program(s) used to solve structure: SHELXT2014 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2017 (Sheldrick, 2015b); molecular graphics: Mercury (Macrae et al., 2020); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009) and publCIF (Westrip, 2010).
(
R,
S)-2-Hydroxy-4-(methylsulfanyl)butanoic acid
top Crystal data top C5H10O3S | F(000) = 640 |
Mr = 150.19 | Dx = 1.374 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 16.0940 (14) Å | Cell parameters from 9911 reflections |
b = 8.8747 (8) Å | θ = 2.6–30.5° |
c = 10.558 (1) Å | µ = 0.38 mm−1 |
β = 105.654 (3)° | T = 100 K |
V = 1452.1 (2) Å3 | Plate, colourless |
Z = 8 | 0.34 × 0.25 × 0.07 mm |
Data collection top Bruker VENTURE CMOS area detector diffractometer | 3474 reflections with I > 2σ(I) |
Radiation source: Incoatec IMuS microfocus Mo tube | Rint = 0.071 |
shutterless ω and phi scans | θmax = 30.6°, θmin = 2.6° |
Absorption correction: multi-scan (AXScale; Bruker, 2017) | h = −22→23 |
Tmin = 0.653, Tmax = 0.746 | k = −12→12 |
37191 measured reflections | l = −15→13 |
4437 independent reflections | |
Refinement top Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: mixed |
wR(F2) = 0.106 | Only H-atom coordinates refined |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0433P)2 + 0.6797P] where P = (Fo2 + 2Fc2)/3 |
4437 reflections | (Δ/σ)max = 0.001 |
223 parameters | Δρmax = 0.53 e Å−3 |
0 restraints | Δρmin = −0.47 e Å−3 |
Special details top Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1A | 0.84095 (3) | 0.20993 (6) | 0.52925 (4) | 0.03405 (12) | |
S1B | 0.92449 (3) | 0.76333 (6) | 0.21950 (6) | 0.04228 (14) | |
O3A | 0.55286 (6) | 0.36868 (11) | 0.33141 (9) | 0.0159 (2) | |
H3A | 0.5659 (12) | 0.439 (2) | 0.3057 (18) | 0.024* | |
O1A | 0.53671 (6) | 0.35894 (11) | 0.06723 (9) | 0.0184 (2) | |
O3B | 0.64397 (7) | 0.61637 (11) | 0.07733 (10) | 0.0179 (2) | |
H3B | 0.5982 (13) | 0.587 (2) | 0.0729 (19) | 0.027* | |
O2A | 0.56541 (7) | 0.11169 (10) | 0.08154 (10) | 0.0175 (2) | |
H2A | 0.5570 (11) | 0.123 (2) | −0.005 (2) | 0.026* | |
O2B | 0.66367 (7) | 0.88568 (11) | 0.33618 (10) | 0.0205 (2) | |
H2B | 0.6535 (12) | 0.880 (2) | 0.412 (2) | 0.031* | |
O1B | 0.60884 (7) | 0.65325 (11) | 0.31386 (10) | 0.0217 (2) | |
C2A | 0.59189 (8) | 0.24683 (14) | 0.28125 (13) | 0.0131 (2) | |
H2AA | 0.5714 (10) | 0.1576 (19) | 0.3142 (16) | 0.016* | |
C1A | 0.56017 (8) | 0.24609 (14) | 0.13230 (13) | 0.0134 (2) | |
C3B | 0.74743 (9) | 0.81369 (16) | 0.13945 (14) | 0.0183 (3) | |
H3BA | 0.7508 (11) | 0.820 (2) | 0.0534 (18) | 0.022* | |
H3BB | 0.7552 (11) | 0.914 (2) | 0.1762 (17) | 0.022* | |
C2B | 0.65613 (9) | 0.76258 (14) | 0.13541 (13) | 0.0150 (2) | |
H2BA | 0.6158 (11) | 0.8295 (19) | 0.0850 (16) | 0.018* | |
C3A | 0.69066 (9) | 0.25339 (16) | 0.32158 (13) | 0.0173 (3) | |
H3AA | 0.7133 (11) | 0.167 (2) | 0.2847 (17) | 0.021* | |
H3AB | 0.7095 (11) | 0.340 (2) | 0.2816 (17) | 0.021* | |
C4A | 0.72730 (10) | 0.25292 (19) | 0.47077 (15) | 0.0231 (3) | |
H4AA | 0.7001 (12) | 0.174 (2) | 0.5080 (18) | 0.028* | |
H4AB | 0.7168 (12) | 0.347 (2) | 0.5062 (18) | 0.028* | |
C4B | 0.81668 (10) | 0.70791 (19) | 0.21803 (19) | 0.0280 (3) | |
H4BA | 0.8093 (12) | 0.610 (2) | 0.1778 (19) | 0.034* | |
H4BB | 0.8140 (12) | 0.696 (2) | 0.307 (2) | 0.034* | |
C5A | 0.88873 (13) | 0.3629 (3) | 0.4614 (2) | 0.0441 (5) | |
H5AA | 0.8738 (17) | 0.356 (3) | 0.359 (3) | 0.066* | |
H5AB | 0.9499 (17) | 0.348 (3) | 0.497 (3) | 0.066* | |
H5AC | 0.8699 (16) | 0.455 (3) | 0.489 (3) | 0.066* | |
C5B | 0.93633 (15) | 0.9292 (3) | 0.3193 (3) | 0.0578 (7) | |
H5BA | 0.898 (2) | 1.008 (4) | 0.280 (3) | 0.087* | |
H5BB | 0.994 (2) | 0.959 (3) | 0.336 (3) | 0.087* | |
H5BC | 0.9255 (19) | 0.895 (3) | 0.407 (3) | 0.087* | |
C1B | 0.64041 (8) | 0.75921 (14) | 0.27099 (13) | 0.0151 (2) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1A | 0.02048 (19) | 0.0455 (3) | 0.0314 (2) | 0.00432 (17) | −0.00131 (16) | 0.00794 (19) |
S1B | 0.0198 (2) | 0.0453 (3) | 0.0635 (3) | −0.00015 (17) | 0.0142 (2) | −0.0085 (2) |
O3A | 0.0236 (5) | 0.0107 (4) | 0.0148 (5) | 0.0014 (4) | 0.0076 (4) | 0.0001 (4) |
O1A | 0.0248 (5) | 0.0136 (4) | 0.0156 (5) | 0.0012 (4) | 0.0035 (4) | 0.0024 (4) |
O3B | 0.0208 (5) | 0.0159 (5) | 0.0179 (5) | −0.0047 (4) | 0.0067 (4) | −0.0036 (4) |
O2A | 0.0291 (5) | 0.0118 (4) | 0.0122 (5) | 0.0001 (4) | 0.0063 (4) | −0.0007 (4) |
O2B | 0.0331 (6) | 0.0147 (5) | 0.0154 (5) | −0.0045 (4) | 0.0097 (4) | −0.0017 (4) |
O1B | 0.0305 (5) | 0.0159 (5) | 0.0219 (5) | −0.0040 (4) | 0.0126 (4) | 0.0002 (4) |
C2A | 0.0176 (6) | 0.0100 (5) | 0.0119 (6) | 0.0006 (4) | 0.0044 (5) | −0.0002 (4) |
C1A | 0.0142 (6) | 0.0119 (6) | 0.0148 (6) | −0.0017 (4) | 0.0050 (5) | −0.0002 (5) |
C3B | 0.0209 (6) | 0.0180 (6) | 0.0170 (7) | −0.0025 (5) | 0.0070 (5) | 0.0005 (5) |
C2B | 0.0192 (6) | 0.0130 (6) | 0.0127 (6) | −0.0002 (5) | 0.0045 (5) | 0.0011 (5) |
C3A | 0.0184 (6) | 0.0185 (6) | 0.0148 (6) | −0.0003 (5) | 0.0043 (5) | −0.0005 (5) |
C4A | 0.0193 (7) | 0.0309 (8) | 0.0175 (7) | 0.0011 (6) | 0.0021 (5) | −0.0003 (6) |
C4B | 0.0212 (7) | 0.0227 (7) | 0.0392 (10) | −0.0007 (6) | 0.0067 (7) | 0.0013 (7) |
C5A | 0.0252 (9) | 0.0575 (13) | 0.0474 (12) | −0.0085 (9) | 0.0058 (8) | 0.0033 (10) |
C5B | 0.0321 (10) | 0.0452 (12) | 0.0835 (19) | −0.0106 (9) | −0.0059 (11) | −0.0134 (12) |
C1B | 0.0170 (6) | 0.0137 (6) | 0.0143 (6) | 0.0006 (5) | 0.0040 (5) | 0.0005 (5) |
Geometric parameters (Å, º) top S1A—C5A | 1.801 (2) | C3B—C2B | 1.5273 (19) |
S1A—C4A | 1.8063 (15) | C3B—H3BA | 0.926 (18) |
S1B—C5B | 1.791 (3) | C3B—H3BB | 0.967 (17) |
S1B—C4B | 1.7995 (16) | C2B—C1B | 1.5197 (19) |
O3A—C2A | 1.4227 (15) | C2B—H2BA | 0.934 (17) |
O3A—H3A | 0.736 (19) | C3A—C4A | 1.526 (2) |
O1A—C1A | 1.2155 (16) | C3A—H3AA | 0.974 (18) |
O3B—C2B | 1.4259 (16) | C3A—H3AB | 0.968 (18) |
O3B—H3B | 0.77 (2) | C4A—H4AA | 0.967 (19) |
O2A—C1A | 1.3197 (15) | C4A—H4AB | 0.95 (2) |
O2A—H2A | 0.89 (2) | C4B—H4BA | 0.96 (2) |
O2B—C1B | 1.3171 (16) | C4B—H4BB | 0.95 (2) |
O2B—H2B | 0.86 (2) | C5A—H5AA | 1.04 (3) |
O1B—C1B | 1.2131 (16) | C5A—H5AB | 0.96 (3) |
C2A—C1A | 1.5167 (18) | C5A—H5AC | 0.95 (3) |
C2A—C3A | 1.5318 (19) | C5B—H5BA | 0.95 (3) |
C2A—H2AA | 0.959 (17) | C5B—H5BB | 0.94 (3) |
C3B—C4B | 1.521 (2) | C5B—H5BC | 1.03 (3) |
| | | |
C5A—S1A—C4A | 101.91 (9) | C4A—C3A—H3AB | 111.9 (10) |
C5B—S1B—C4B | 100.32 (10) | C2A—C3A—H3AB | 109.5 (10) |
C2A—O3A—H3A | 108.2 (15) | H3AA—C3A—H3AB | 105.0 (15) |
C2B—O3B—H3B | 110.7 (14) | C3A—C4A—S1A | 115.28 (11) |
C1A—O2A—H2A | 108.0 (12) | C3A—C4A—H4AA | 109.3 (11) |
C1B—O2B—H2B | 109.6 (13) | S1A—C4A—H4AA | 103.5 (11) |
O3A—C2A—C1A | 109.29 (10) | C3A—C4A—H4AB | 110.1 (11) |
O3A—C2A—C3A | 113.39 (11) | S1A—C4A—H4AB | 108.8 (11) |
C1A—C2A—C3A | 108.79 (10) | H4AA—C4A—H4AB | 109.5 (16) |
O3A—C2A—H2AA | 105.3 (10) | C3B—C4B—S1B | 113.51 (11) |
C1A—C2A—H2AA | 108.7 (10) | C3B—C4B—H4BA | 109.5 (12) |
C3A—C2A—H2AA | 111.3 (10) | S1B—C4B—H4BA | 104.8 (11) |
O1A—C1A—O2A | 124.01 (12) | C3B—C4B—H4BB | 112.4 (12) |
O1A—C1A—C2A | 123.28 (11) | S1B—C4B—H4BB | 108.6 (12) |
O2A—C1A—C2A | 112.61 (11) | H4BA—C4B—H4BB | 107.6 (17) |
C4B—C3B—C2B | 112.94 (12) | S1A—C5A—H5AA | 111.3 (15) |
C4B—C3B—H3BA | 110.1 (11) | S1A—C5A—H5AB | 104.0 (16) |
C2B—C3B—H3BA | 107.5 (11) | H5AA—C5A—H5AB | 109 (2) |
C4B—C3B—H3BB | 110.7 (10) | S1A—C5A—H5AC | 108.7 (16) |
C2B—C3B—H3BB | 107.7 (10) | H5AA—C5A—H5AC | 112 (2) |
H3BA—C3B—H3BB | 107.7 (15) | H5AB—C5A—H5AC | 112 (2) |
O3B—C2B—C1B | 110.41 (10) | S1B—C5B—H5BA | 113.0 (18) |
O3B—C2B—C3B | 107.56 (11) | S1B—C5B—H5BB | 106.3 (19) |
C1B—C2B—C3B | 112.52 (11) | H5BA—C5B—H5BB | 112 (3) |
O3B—C2B—H2BA | 109.9 (10) | S1B—C5B—H5BC | 105.4 (17) |
C1B—C2B—H2BA | 106.4 (10) | H5BA—C5B—H5BC | 111 (3) |
C3B—C2B—H2BA | 110.0 (10) | H5BB—C5B—H5BC | 108 (2) |
C4A—C3A—C2A | 111.71 (11) | O1B—C1B—O2B | 123.66 (12) |
C4A—C3A—H3AA | 109.2 (10) | O1B—C1B—C2B | 124.04 (12) |
C2A—C3A—H3AA | 109.3 (10) | O2B—C1B—C2B | 112.30 (11) |
| | | |
O3A—C2A—C1A—O1A | 27.77 (17) | C2A—C3A—C4A—S1A | 164.16 (10) |
C3A—C2A—C1A—O1A | −96.52 (15) | C5A—S1A—C4A—C3A | 62.16 (15) |
O3A—C2A—C1A—O2A | −155.72 (10) | C2B—C3B—C4B—S1B | 178.17 (10) |
C3A—C2A—C1A—O2A | 79.99 (13) | C5B—S1B—C4B—C3B | 69.76 (16) |
C4B—C3B—C2B—O3B | −59.22 (16) | O3B—C2B—C1B—O1B | −10.81 (19) |
C4B—C3B—C2B—C1B | 62.59 (16) | C3B—C2B—C1B—O1B | −130.99 (14) |
O3A—C2A—C3A—C4A | 58.73 (15) | O3B—C2B—C1B—O2B | 170.24 (11) |
C1A—C2A—C3A—C4A | −179.44 (11) | C3B—C2B—C1B—O2B | 50.06 (15) |
Hydrogen-bond geometry (Å, º) top D—H···A | D—H | H···A | D···A | D—H···A |
O3A—H3A···O1B | 0.736 (19) | 2.013 (19) | 2.7044 (14) | 156.4 (19) |
O3B—H3B···O1A | 0.77 (2) | 2.246 (19) | 2.8480 (14) | 135.6 (18) |
O3B—H3B···O1Ai | 0.77 (2) | 2.325 (19) | 2.9048 (14) | 132.9 (18) |
O2A—H2A···O3Aii | 0.89 (2) | 1.71 (2) | 2.5995 (14) | 172.7 (18) |
O2B—H2B···O3Biii | 0.86 (2) | 1.79 (2) | 2.6493 (14) | 172.6 (19) |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x, −y+1/2, z−1/2; (iii) x, −y+3/2, z+1/2. |
Selected torsion angles (°) in (I) and related structures top | C1—C2—C3—C4 | C2—C3—C4—S1 | C3—C4—S1—C5 | O1—C1—C2—O3/N1b | Ref |
(IA)a | 179.4 (1) | -164.2 (1) | -62.2 (2) | -27.8 (2) | This work |
(IB)a | -62.6 (2) | -178.2 (1) | -69.8 (2) | 10.8 (2) | This work |
Cu(HMTBA)2 a | 175.0 (4) | 164.9 (3) | 63.2 (5) | -14.2 (5) | (Yang et al., 2015) |
Zn(HMTBA)2 : molecule A (S) | -60.6 (7) | -157.5 (4) | -58.8 (6) | 3.9 (6) | (Predieri et al., 2009) |
molecule B (R) | 64.6 (7) | -76.7 (7) | -68.2 (7) | 9.5 (6) | |
molecule C (R) | 60.0 (7) | 173.4 (5) | 66.2 (7) | 9.7 (6) | |
molecule D (S) | -57.7 (9) | -174.7 (6) | -122.9 (8) | -1.3 (7) | |
L-Met: molecule A | 71.8 (3) | 171.6 (3) | -178.5 (3) | -16.3 (2) | (Dalhus & Görbitz, 1996) |
molecule B | 74.1 (3) | 71.5 (3) | 72.4 (3) | -32.4 (2) | |
α-DL-Met a | -178.0 (2) | 176.7 (2) | 69.4 (3) | -29.4 (3) | (Görbitz et al., 2014) |
β-DL-Met a | -173.6 (2) | -179.2 (1) | -175.0 (2) | -32.6 (2) | (Alagar et al., 2005) |
L-(+)-lactic acid | | | | 7.6 (1) | (Schouten et al., 1994) |
glycolic acid: molecule A | | | | -6.16 (2) | (Pijper, 1971) |
molecule B | | | | -2.93 (2) | |
Notes: (a) Signs of the angle values are given for the (S)-enantiomer; (b) N1 in methionine. |
Suspected hydrogen bonds (Å, °) topD—H···A | D—H | H···A | D···A | D—H···A |
C2B—H2BA···O2Ai | 0.933 (17) | 2.630 (17) | 3.4068 (16) | 141.1 (13) |
Symmetry code: (i) x, 1 + y, z. |
Contributions (%) of intermolecular atom–atom contacts to the Hirshfeld surface in (I) and related structures top | Backbone rotamer a | H···H | S···H | O···H | Other | | | |
HMTBA | | | | | O···O; | C···O; | C···H; | S···S |
(IA) | ttg- | 48.9 | 14.3 | 32.3 | 1.7; | 1.7; | 0.9; | 0.1 |
(IB) | g-tg- | 50.4 | 18.2 | 28.5 | 1.0; | 1.7; | 0.2; | 0.1 |
| | | | | | | | |
| | | | | O···O; | C···O; | C···H; | Cu···O |
Cu(HMTBA)2 | ttg+ | 44.0 | 18.0 | 25.2 | 2.9; | 1.7; | 1.3; | 6.9 |
| | | | | | | | |
Zn(HMTBA)2 | | | | | O···O; | C···H; | S···S; | Zn···O |
molecule A (S) | g-tg- | 48.4 | 18.4 | 22.0 | 2.4; | 1.1; | 0.3; | 7.5 |
molecule B (R) | g+g-g- | 49.2 | 13.9 | 28.0 | 0.9; | 1.0; | 1.0; | 4.9 |
molecule C (R) | g+tg+ | 48.2 | 15.7 | 28.7 | 0.8; | 0.8; | 0.3; | 5.0 |
| | | | | | | | |
L-Met | | | | | O···O; | C···O; | C···H; | C···C |
molecule A | g+tt | 48.3 | 14.9 | 34.7 | 0.1; | 0.6; | 0.6; | 0.5 |
molecule B | g+g+g+ | 46.7 | 15.1 | 35.6 | 0.5; | 0.6; | 0.6; | 0.5 |
| | | | | | | | |
β-DL-Met | ttt | 48.7 | 14.6 | 35.6 | 0.3; | 0.4; | 1.3 | |
Note: (a) Refer to Table 1 for chirality of the molecules and the actual torsion-angle values. |
Funding information
Funding for this research was provided by: University of Missouri Agriculture Experiment Station Chemical Laboratories ; National Institute of Food and Agriculture (grant No. MO-HABC0002).
References
Alagar, M., Krishnakumar, R. V., Mostad, A. & Natarajan, S. (2005). Acta Cryst. E61, o1165–o1167. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bhalla, T. C., Kumar, V. & Bhatia, S. K. (2013). Advances in Industrial Biotechnology, edited by R. S. Singh, A. Pandey & C. Larroche, pp. 56–76. Delhi: IK International Publishing House. Google Scholar
Bruker. (2017). APEX3 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Busto, E., Richter, N., Grischek, B. & Kroutil, W. (2014). Chem. Eur. J. 20, 11225–11228. Web of Science CrossRef CAS PubMed Google Scholar
Dalhus, B. & Görbitz, C. H. (1996). Acta Chem. Scand. 50, 544–548. CSD CrossRef CAS Web of Science Google Scholar
Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341. Web of Science CrossRef CAS IUCr Journals Google Scholar
Gilbert, E. R. (2015). Front. Biosci. 7, 478–490. CrossRef Google Scholar
Görbitz, C. H., Qi, L., Mai, N. T. K. & Kristiansen, H. (2014). Acta Cryst. E70, 337–340. CSD CrossRef IUCr Journals Google Scholar
Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. Web of Science CrossRef IUCr Journals Google Scholar
Koban, H. G. & Koberstein, E. (1984). J. Agric. Food Chem. 32, 393–396. CrossRef CAS Web of Science Google Scholar
Macrae, C. F., Sovago, I., Cottrell, S. J., Galek, P. T. A., McCabe, P., Pidcock, E., Platings, M., Shields, G. P., Stevens, J. S., Towler, M. & Wood, P. A. (2020). J. Appl. Cryst. 53, 226–235. Web of Science CrossRef CAS IUCr Journals Google Scholar
Pijper, W. P. (1971). Acta Cryst. B27, 344–348. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Predieri, G., Beltrami, D., Pattacini, R., Parisi, M. L., Sinicropi, A., Valensin, D. & Basosi, R. (2009). Inorg. Chim. Acta, 362, 1115–1121. Web of Science CSD CrossRef CAS Google Scholar
Schouten, A., Kanters, J. A. & van Krieken, J. (1994). J. Mol. Struct. 323, 165–168. CSD CrossRef CAS Web of Science Google Scholar
Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Spackman, M. A. & Jayatilaka, D. (2009). CrystEngComm, 11, 19–32. Web of Science CrossRef CAS Google Scholar
Torii, K. & Iitaka, Y. (1973). Acta Cryst. B29, 2799–2807. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Yang, Z., Aygul, N., Liu, X., Zhao, S., Zhao, W. & Yang, S. (2015). Chin. J. Struct. Chem. 34, 147–153. CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
 | CRYSTALLOGRAPHIC COMMUNICATIONS |
ISSN: 2056-9890
Open

access