research communications
Different conformations and packing motifs in the crystal structures of four thiophene–carbohydrazide–pyridine derivatives
aDepartment of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland, bFundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos-Far, Manguinhos, 21041-250, Rio de Janeiro, RJ, Brazil, and cCHEMSOL, 1 Harcourt Road, Aberdeen AB15 5NY, Scotland
*Correspondence e-mail: w.harrison@abdn.ac.uk
The crystal structures of four thiophene–carbohydrazide–pyridine derivatives, viz. N′-[(E)-pyridin-3-ylmethylidene]thiophene-2-carbohydrazide, C11H9N3OS, (I), N′-[(E)-pyridin-2-ylmethylidene]thiophene-2-carbohydrazide, C11H9N3OS, (II), N-methyl-N′-[(E)-pyridin-2-ylmethylidene]thiophene-2-carbohydrazide, C12H11N3OS, (III) and N′-[(E)-pyridin-2-ylmethylidene]-2-(thiophen-2-yl)ethanohydrazide, C12H11N3OS, (IV) are described. The dihedral angles between the thiophene ring and the pyridine ring are 21.4 (2), 15.42 (14), 4.97 (8) and 83.52 (13)° for (I)–(IV), respectively. The thiophene ring in (IV) is disordered over two orientations in a 0.851 (2):0.149 (2) ratio. Key features of the packing include N—H⋯Np (p = pyridine) hydrogen bonds in (I), which generate C(7) chains propagating in the [001] direction; N—H⋯Np links also feature in (II), but in this case they lead to C(6) [001] chains; in (IV), classical amide (C4) N—H⋯O links result in [010] chains; in every case adjacent molecules in the chains are related by 21 screw axes. There are no classical hydrogen bonds in the extended structure of (III). Various weak C—H⋯X (X = O, N, S) interactions occur in each structure, but no aromatic π–π stacking is evident. The Hirshfeld surfaces and fingerprint plots for (I)–(IV) are compared.
Keywords: crystal structure; thiophene; carbohydrazide; pyridine.
1. Chemical context
Various thiophene–carbohydrazide derivatives containing a T—C(=O)—NH—N=CH—R (T = thiophene ring) building unit have been previously investigated by some of us for their anti-cancer (Cardoso et al., 2017) and anti-tuberculosis (Cardoso et al., 2014, 2016a) properties. Other workers have reported their analgesic activities (Lima et al., 2000) and their potential uses as tunable photo switches (van Dijken et al., 2015). The use of these compounds as multi-dentate chelating ligands has been described by Gholivand et al. (2016) and Abbas et al. (2021).
In a continuation of our earlier work on this family of compounds (Cardoso et al., 2016b,c), we now describe the crystal structures and Hirshfeld surfaces of N′-[(E)-pyridin-3-ylmethylidene]thiophene-2-carbohydrazide, C11H9N3OS (I), N′-[(E)-pyridin-2-ylmethylidene]thiophene-2-carbohydrazide, C11H9N3OS (II), N-methyl-N′-[(E)-pyridin-2-ylmethylidene]thiophene-2-carbohydrazide, C12H11N3OS (III) and N′-[(E)-pyridin-2-ylmethylidene]-2-(thiophen-2-yl)ethanohydrazide, C12H11N3OS (IV). Compounds (I) and (II) are positional isomers, differing in the location of the N atom of the pyridine ring, (III) is a methylated derivative of (II) and (IV) has a methylene group inserted between the thiophene ring and the carboyhdrazide grouping compared to (I).
2. Structural commentary
The molecular structures of (I)–(IV) are shown in Figs. 1–4, respectively and they all confirm the structures (atomic connectivities) postulated in the previous studies noted in the synthesis section: each compound crystallizes with one molecule in the and there is no suggestion that any of these compounds exist in the `enol' —C(OH)=N— tautomer in the solid state.
In (I) (Fig. 1), the conformation about the N2=C6 bond [1.280 (5) Å] is E and the C5—N1—N2—C6 torsion angle is 175.1 (4)°. The oxygen atom of the carbonyl group and the sulfur atom of the thiophene ring lie on the same side of the molecule [S1—C4—C5—O1 = −4.9 (6)°] whereas atom N3 of the pyridine ring lies on the opposite side. The dihedral angle between the thiophene and pyridine rings is 21.4 (2)° and the largest twist in the molecule occurs about the C6—C7 bond [N2—C6—C7—C8 = −11.8 (7)°]. The N1—N2 bond length of 1.384 (5) Å in (I) is significantly shorter than a typical N—N single bond (∼1.44 Å), which suggests substantial delocalization of electrons with the adjacent C5=O1 carbonyl group and the N2=C6 double bond, as observed previously for related compounds (Cardoso et al., 2016c). Otherwise, the bond lengths and angles in (I) may be regarded as unexceptional.
In (II) (Fig. 2), the N2=C6 double bond [1.284 (3) Å] is also in an E configuration and C5—N1—N2—C6 = 173.74 (19)° but unlike (I), atoms O1 and S1 lie on opposite sides of the molecule [S1—C4—C5—O1 = −170.67 (17)°] and N3 lies on the same side as O1. The dihedral angle between the aromatic rings is 15.42 (14)° and the most significant twist occurs about the C5—N1 bond [C4—C5—N1—N2 = 12.0 (3)°]. The C8—H8 bond of the pyridine ring points towards S1 but with H⋯S = 3.22 Å (sum of van der Waals radii = 3.00 Å) we consider it to be too long to be regarded as an intramolecular hydrogen bond.
Compound (III) (Fig. 3) is the N-methylated derivative of (II): the N2=C7 bond [1.2815 (17) Å] has an E configuration and C5—N1—N2—C7 = 179.40 (12)°. As with (II), O1 and S1 lie on opposite sides of the molecule [S1—C4—C5—O1 = 178.88 (10)° and N3 lies on the same side as O1. The dihedral angle between the C1–C4/S1 and C8–C12/N3 rings is 4.97 (8)°: most of this twist appear to be about the C7—C8 bond [N2—C7—C8—C9 = −4.8 (2)°] although the whole molecule is close to flat [r.m.s. deviation for the 17 non-H atoms = 0.065 Å]. In this case, the short intramolecular H⋯S contact between C9—H9 and S1 is 2.84 Å (C—H⋯S = 155°), considerably shorter than the equivalent contact in (II), and reasonable for this type of weak interaction (Ghosh et al., 2020).
In (IV) (Fig. 4), the thiophene ring was modelled with `flip' disorder (∼180° rotation about the C4—C5 bond) in a 0.851 (2): 0.149 (2) ratio, which is a common structural feature for this moiety (Cardoso et al., 2016c). Once again, the configuration of the N2=C7 double bond [1.281 (2) Å] is E and C6 and C7 are close to anti about the N—N bond [C6—N1—N2—C7 = −177.90 (14)°]. The dihedral angle between the aromatic rings (major disorder conformation for the thiophene moiety) in (IV) of 83.52 (13)° indicates near perpendicularity, which is quite different to the other compounds described here, presumably because the molecule has additional conformational flexibility about the C—C single bonds associated with the C5 methylene group [C3—C4—C5—C6 = 93.8 (6)°; C4—C5—C6—N1 = 144.72 (14)°].
3. Supramolecular features
Geometrical data for the directional intermolecular interactions in (I)–(IV) are listed in Tables 1–4, respectively. The most significant features in the packing of (I) and (II) are N—H⋯Np (p = pyridine) hydrogen bonds: in the former, these links generate [001] C(7) chains (Fig. 5), with adjacent molecules in the chain related by the 21 screw axis. In (II), the equivalent interaction also leads to [001] chains (Fig. 6) generated by the 21 screw axis but here the graph-set motif is C(6). The packing for (IV) features classical C(4) amide N—H⋯O hydrogen bonds (Fig. 7) leading to [010] chains generated once again by a 21 screw axis. There are obviously no classical hydrogen bonds in the extended structure of (III) and the only possible directional intermolecular contact identified is a very weak C—H⋯Np link arising from the N-methyl group. The structures of (I), (II) and (IV) also feature various C—H⋯X (X = N, O, S) interactions although these are presumably very weak, given their H⋯X lengths.
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The shortest aromatic ring centroid–centroid separations in these structures are πt⋯πp (t = thiophene, p = pyridine) = 4.046 (2) Å (slippage = 1.546 Å) for (I), πt⋯πp = 4.0509 (12) Å (slippage = 1.929 Å) for (II), πt⋯πp = 4.7831 (9) Å for (III) and πt⋯πp = 4.643 (2) Å for (IV). Given these distances, any aromatic ring-stacking effects that contribute to the cohesion and stability of the crystal must be weak to non-existent.
In order to gain more insight into these different packing motifs, the Hirshfeld surfaces and fingerprint plots for (I)–(IV) were calculated using CrystalExplorer (Turner et al., 2017) following the approach recently described by Tan et al. (2019). The Hirshfeld surfaces (see supporting information) show the expected red spots (close contacts) in the vicinities of the various donor and acceptor atoms.
The fingerprint plots for (I)–(IV) decomposed into the different percentage contact types (Table 5) show that the different contributions are broadly similar, with H⋯H (van der Waals) contacts the most significant for each structure, followed by C⋯H/H⋯C. The O⋯H/H⋯O and N⋯H/H⋯N contributions are almost the same for the four structures, despite the lack of classical hydrogen bonds in (III). The S⋯H/H⋯S percentage contributions for (I) and (IV) are notably greater than those for (II) and (III), possibly because the S atom is `facing outwards' in the former structures but is associated with an intramolecular C—H⋯S close contact arising from the pyridine ring in the latter structures. It is notable that the percentage of O⋯O contacts is zero in all structures, presumably reflecting the fact that `bare' O atoms avoid each other in the solid state for electrostatic reasons.
4. Database survey
A survey of the Cambridge Structural Database (CSD Core 2012.3 version of March 2022; Groom et al., 2016) revealed nine structures incorporating the T—C(=O)—NH—N=CH—Q (T = thiophene ring; Q = thiophene or furan or pyrrole ring or derivatives) grouping and two with the T—CH2—C(=O)—NH—N=CH—Q sequence. None of these structures features a pyridine ring in the `Q' position.
5. Synthesis and crystallization
Compounds (I) and (II) were prepared by a literature procedure (Lima et al., 2000) and single crystals suitable for data collection were recrystallized from ethanol solution at room temperature. For the syntheses and spectroscopic characterizations of (III) and (IV), see Cardoso et al. (2016a) and Cardoso et al. (2014), respectively: in each case, colourless blocks suitable for X-ray data collections were recrystallized from ethanol solution at room temperature.
6. Refinement
Crystal data, data collection and structure . The thiophene ring in (IV) was modelled as disordered over two sets of sites related by an approximate rotation of 180° about the C4—C5 bond in a 0.851 (2): 0.149 (2) ratio. EADP cards in SHELXL were used for the Uij values of equivalent atom pairs (e.g., C1 and C1B) and a SAME card was used to restrain the nearest-neighbour and next-nearest-neighbour bond distances in the two disorder components to be equal with standard deviations of 0.02 and 0.04 Å, respectively. The N-bound H atoms in (I), (II) and (IV) were located in difference maps and their positions were freely refined with Uiso(H) = 1.2Ueq(N). All C-bound H atoms were located geometrically (C—H = 0.95–0.99 Å) and refined as riding atoms with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C). The methyl group in (III) was allowed to rotate, but not to tip, to best fit the electron density.
details are summarized in Table 6
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Supporting information
https://doi.org/10.1107/S2056989022005151/zl5030sup1.cif
contains datablocks I, II, III, IV, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989022005151/zl5030Isup2.hkl
Structure factors: contains datablock II. DOI: https://doi.org/10.1107/S2056989022005151/zl5030IIsup3.hkl
Structure factors: contains datablock III. DOI: https://doi.org/10.1107/S2056989022005151/zl5030IIIsup4.hkl
Structure factors: contains datablock IV. DOI: https://doi.org/10.1107/S2056989022005151/zl5030IVsup5.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989022005151/zl5030Isup6.cml
Supporting information file. DOI: https://doi.org/10.1107/S2056989022005151/zl5030IIsup7.cml
Supporting information file. DOI: https://doi.org/10.1107/S2056989022005151/zl5030IIIsup8.cml
Supporting information file. DOI: https://doi.org/10.1107/S2056989022005151/zl5030IVsup9.cml
Hirshfeld surfaces. DOI: https://doi.org/10.1107/S2056989022005151/zl5030sup10.docx
For all structures, data collection: CrystalClear (Rigaku, 2012); cell
CrystalClear (Rigaku, 2012); data reduction: CrystalClear (Rigaku, 2012); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2018/3 (Sheldrick, 2015); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: publCIF (Westrip, 2010).C11H9N3OS | Dx = 1.500 Mg m−3 |
Mr = 231.27 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pca21 | Cell parameters from 5861 reflections |
a = 10.6845 (9) Å | θ = 3.5–27.5° |
b = 9.4974 (9) Å | µ = 0.30 mm−1 |
c = 10.0917 (10) Å | T = 100 K |
V = 1024.05 (16) Å3 | Chip, colourless |
Z = 4 | 0.05 × 0.04 × 0.01 mm |
F(000) = 480 |
Rigaku Saturn724+ CCD diffractometer | 1559 reflections with I > 2σ(I) |
ω scans | Rint = 0.058 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2012) | θmax = 27.5°, θmin = 3.5° |
Tmin = 0.484, Tmax = 1.000 | h = −12→13 |
6740 measured reflections | k = −12→12 |
1822 independent reflections | l = −7→13 |
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.046 | w = 1/[σ2(Fo2) + (0.0492P)2 + 0.5837P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.112 | (Δ/σ)max < 0.001 |
S = 1.08 | Δρmax = 0.27 e Å−3 |
1822 reflections | Δρmin = −0.43 e Å−3 |
148 parameters | Absolute structure: Parsons et al. (2013) |
1 restraint | Absolute structure parameter: 0.02 (13) |
Primary atom site location: structure-invariant direct methods |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.4074 (4) | 0.5100 (5) | −0.3833 (5) | 0.0253 (10) | |
H1 | 0.444915 | 0.579791 | −0.437808 | 0.030* | |
C2 | 0.2866 (4) | 0.4653 (4) | −0.3959 (5) | 0.0239 (10) | |
H2 | 0.230294 | 0.500393 | −0.460776 | 0.029* | |
C3 | 0.2544 (4) | 0.3608 (4) | −0.3018 (5) | 0.0236 (10) | |
H3 | 0.173924 | 0.318696 | −0.296656 | 0.028* | |
C4 | 0.3510 (4) | 0.3271 (4) | −0.2195 (4) | 0.0199 (10) | |
C5 | 0.3644 (4) | 0.2257 (4) | −0.1092 (4) | 0.0194 (9) | |
C6 | 0.1581 (4) | 0.0118 (5) | 0.0671 (5) | 0.0215 (9) | |
H6 | 0.084911 | 0.035530 | 0.018411 | 0.026* | |
C7 | 0.1483 (4) | −0.0844 (4) | 0.1798 (4) | 0.0188 (9) | |
C8 | 0.2501 (3) | −0.1470 (4) | 0.2449 (6) | 0.0215 (9) | |
H8 | 0.333133 | −0.132248 | 0.214145 | 0.026* | |
C9 | 0.2277 (4) | −0.2306 (4) | 0.3544 (5) | 0.0208 (9) | |
H9 | 0.295199 | −0.273712 | 0.400284 | 0.025* | |
C10 | 0.1052 (4) | −0.2507 (5) | 0.3966 (5) | 0.0228 (10) | |
H10 | 0.091113 | −0.306383 | 0.473419 | 0.027* | |
C11 | 0.0286 (3) | −0.1154 (4) | 0.2275 (5) | 0.0196 (9) | |
H11 | −0.041192 | −0.077506 | 0.181272 | 0.023* | |
N1 | 0.2581 (3) | 0.1569 (4) | −0.0731 (4) | 0.0196 (8) | |
H1N | 0.186 (4) | 0.181 (5) | −0.107 (5) | 0.023* | |
N2 | 0.2634 (3) | 0.0646 (4) | 0.0328 (4) | 0.0211 (8) | |
N3 | 0.0061 (3) | −0.1955 (4) | 0.3344 (4) | 0.0217 (8) | |
O1 | 0.4666 (3) | 0.2073 (3) | −0.0557 (4) | 0.0278 (8) | |
S1 | 0.48271 (9) | 0.42487 (11) | −0.25732 (14) | 0.0248 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.030 (2) | 0.024 (2) | 0.022 (3) | −0.0009 (18) | 0.009 (2) | 0.002 (2) |
C2 | 0.030 (2) | 0.026 (2) | 0.016 (3) | 0.0038 (18) | 0.000 (2) | 0.006 (2) |
C3 | 0.026 (2) | 0.022 (2) | 0.022 (3) | 0.0033 (16) | −0.0001 (18) | 0.0045 (19) |
C4 | 0.025 (2) | 0.0204 (19) | 0.015 (2) | 0.0014 (16) | −0.0012 (18) | −0.0021 (17) |
C5 | 0.020 (2) | 0.022 (2) | 0.017 (2) | −0.0029 (16) | 0.0016 (18) | −0.0019 (19) |
C6 | 0.0196 (19) | 0.025 (2) | 0.019 (2) | −0.0002 (17) | −0.004 (2) | −0.0007 (19) |
C7 | 0.018 (2) | 0.0216 (19) | 0.017 (2) | −0.0014 (15) | 0.0001 (18) | −0.0027 (18) |
C8 | 0.0177 (18) | 0.0242 (19) | 0.023 (2) | −0.0026 (13) | −0.002 (3) | −0.005 (2) |
C9 | 0.020 (2) | 0.026 (2) | 0.017 (2) | 0.0002 (16) | −0.006 (2) | 0.001 (2) |
C10 | 0.025 (2) | 0.027 (2) | 0.017 (2) | 0.0016 (17) | −0.001 (2) | −0.0001 (19) |
C11 | 0.0169 (17) | 0.0238 (18) | 0.018 (2) | 0.0012 (14) | −0.001 (2) | −0.002 (2) |
N1 | 0.0164 (17) | 0.0258 (18) | 0.016 (2) | −0.0001 (14) | −0.0040 (16) | 0.0038 (16) |
N2 | 0.0247 (19) | 0.0223 (18) | 0.016 (2) | −0.0014 (14) | −0.0010 (18) | 0.0000 (16) |
N3 | 0.0250 (18) | 0.0222 (16) | 0.018 (2) | 0.0005 (15) | 0.0031 (17) | −0.0009 (16) |
O1 | 0.0179 (15) | 0.0385 (18) | 0.0270 (19) | −0.0039 (12) | −0.0050 (15) | 0.0063 (17) |
S1 | 0.0222 (5) | 0.0301 (5) | 0.0221 (6) | −0.0036 (4) | 0.0015 (6) | 0.0037 (6) |
C1—C2 | 1.364 (6) | C6—H6 | 0.9500 |
C1—S1 | 1.708 (5) | C7—C11 | 1.398 (5) |
C1—H1 | 0.9500 | C7—C8 | 1.403 (6) |
C2—C3 | 1.415 (6) | C8—C9 | 1.381 (7) |
C2—H2 | 0.9500 | C8—H8 | 0.9500 |
C3—C4 | 1.363 (6) | C9—C10 | 1.390 (6) |
C3—H3 | 0.9500 | C9—H9 | 0.9500 |
C4—C5 | 1.479 (6) | C10—N3 | 1.338 (5) |
C4—S1 | 1.729 (4) | C10—H10 | 0.9500 |
C5—O1 | 1.230 (5) | C11—N3 | 1.342 (6) |
C5—N1 | 1.360 (5) | C11—H11 | 0.9500 |
C6—N2 | 1.280 (5) | N1—N2 | 1.384 (5) |
C6—C7 | 1.463 (6) | N1—H1N | 0.87 (5) |
C2—C1—S1 | 111.6 (3) | C8—C7—C6 | 125.0 (4) |
C2—C1—H1 | 124.2 | C9—C8—C7 | 118.9 (4) |
S1—C1—H1 | 124.2 | C9—C8—H8 | 120.5 |
C1—C2—C3 | 112.7 (4) | C7—C8—H8 | 120.5 |
C1—C2—H2 | 123.7 | C8—C9—C10 | 119.2 (4) |
C3—C2—H2 | 123.7 | C8—C9—H9 | 120.4 |
C4—C3—C2 | 112.9 (4) | C10—C9—H9 | 120.4 |
C4—C3—H3 | 123.5 | N3—C10—C9 | 123.2 (4) |
C2—C3—H3 | 123.5 | N3—C10—H10 | 118.4 |
C3—C4—C5 | 133.3 (4) | C9—C10—H10 | 118.4 |
C3—C4—S1 | 110.8 (3) | N3—C11—C7 | 124.1 (4) |
C5—C4—S1 | 115.9 (3) | N3—C11—H11 | 118.0 |
O1—C5—N1 | 123.7 (4) | C7—C11—H11 | 118.0 |
O1—C5—C4 | 120.6 (4) | C5—N1—N2 | 118.5 (4) |
N1—C5—C4 | 115.7 (4) | C5—N1—H1N | 120 (3) |
N2—C6—C7 | 121.1 (4) | N2—N1—H1N | 120 (3) |
N2—C6—H6 | 119.4 | C6—N2—N1 | 114.8 (4) |
C7—C6—H6 | 119.4 | C10—N3—C11 | 117.3 (4) |
C11—C7—C8 | 117.3 (4) | C1—S1—C4 | 92.0 (2) |
C11—C7—C6 | 117.7 (4) | ||
S1—C1—C2—C3 | 0.2 (5) | C8—C9—C10—N3 | 1.6 (7) |
C1—C2—C3—C4 | −0.3 (6) | C8—C7—C11—N3 | 3.2 (6) |
C2—C3—C4—C5 | −179.1 (5) | C6—C7—C11—N3 | −176.2 (4) |
C2—C3—C4—S1 | 0.2 (5) | O1—C5—N1—N2 | 2.4 (6) |
C3—C4—C5—O1 | 174.4 (5) | C4—C5—N1—N2 | −177.6 (3) |
S1—C4—C5—O1 | −4.9 (6) | C7—C6—N2—N1 | −178.2 (4) |
C3—C4—C5—N1 | −5.6 (7) | C5—N1—N2—C6 | 175.1 (4) |
S1—C4—C5—N1 | 175.1 (3) | C9—C10—N3—C11 | −1.0 (6) |
N2—C6—C7—C11 | 167.6 (4) | C7—C11—N3—C10 | −1.5 (6) |
N2—C6—C7—C8 | −11.8 (7) | C2—C1—S1—C4 | −0.1 (4) |
C11—C7—C8—C9 | −2.5 (6) | C3—C4—S1—C1 | −0.1 (4) |
C6—C7—C8—C9 | 176.9 (4) | C5—C4—S1—C1 | 179.4 (3) |
C7—C8—C9—C10 | 0.3 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···N3i | 0.87 (5) | 2.14 (5) | 2.995 (5) | 166 (4) |
C1—H1···O1ii | 0.95 | 2.53 | 3.471 (6) | 171 |
C3—H3···N3i | 0.95 | 2.61 | 3.479 (6) | 152 |
C6—H6···N3i | 0.95 | 2.59 | 3.410 (6) | 145 |
C9—H9···O1iii | 0.95 | 2.66 | 3.397 (5) | 135 |
C11—H11···N2iv | 0.95 | 2.57 | 3.481 (6) | 160 |
Symmetry codes: (i) −x, −y, z−1/2; (ii) −x+1, −y+1, z−1/2; (iii) −x+1, −y, z+1/2; (iv) x−1/2, −y, z. |
C11H9N3OS | Dx = 1.453 Mg m−3 |
Mr = 231.27 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pna21 | Cell parameters from 6000 reflections |
a = 18.4056 (13) Å | θ = 2.4–27.5° |
b = 9.5255 (7) Å | µ = 0.29 mm−1 |
c = 6.0300 (4) Å | T = 100 K |
V = 1057.19 (13) Å3 | Blade, dark orange |
Z = 4 | 0.15 × 0.06 × 0.04 mm |
F(000) = 480 |
Rigaku Saturn724+ CCD diffractometer | 1930 reflections with I > 2σ(I) |
ω scans | Rint = 0.026 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2012) | θmax = 27.5°, θmin = 3.1° |
Tmin = 0.756, Tmax = 1.000 | h = −23→23 |
7314 measured reflections | k = −9→12 |
1979 independent reflections | l = −5→7 |
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.029 | w = 1/[σ2(Fo2) + (0.0573P)2 + 0.2224P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.083 | (Δ/σ)max = 0.001 |
S = 1.08 | Δρmax = 0.33 e Å−3 |
1979 reflections | Δρmin = −0.24 e Å−3 |
148 parameters | Absolute structure: Parsons et al. (2013) |
1 restraint | Absolute structure parameter: 0.04 (4) |
Primary atom site location: structure-invariant direct methods |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.80728 (12) | 0.2567 (2) | 0.9079 (4) | 0.0243 (5) | |
H1 | 0.844507 | 0.190518 | 0.876806 | 0.029* | |
C2 | 0.80182 (12) | 0.3272 (2) | 1.1043 (4) | 0.0240 (5) | |
H2 | 0.834112 | 0.312980 | 1.225101 | 0.029* | |
C3 | 0.74255 (10) | 0.4248 (2) | 1.1102 (5) | 0.0225 (5) | |
H3 | 0.730933 | 0.483815 | 1.232138 | 0.027* | |
C4 | 0.70395 (11) | 0.4200 (2) | 0.9075 (4) | 0.0198 (4) | |
C5 | 0.64198 (11) | 0.5159 (2) | 0.8639 (4) | 0.0201 (4) | |
C6 | 0.56443 (11) | 0.3875 (2) | 0.3737 (4) | 0.0214 (4) | |
H6 | 0.530355 | 0.461814 | 0.358627 | 0.026* | |
C7 | 0.56402 (10) | 0.2730 (2) | 0.2119 (5) | 0.0207 (4) | |
C8 | 0.61299 (11) | 0.1601 (2) | 0.2192 (5) | 0.0248 (4) | |
H8 | 0.647838 | 0.152750 | 0.334814 | 0.030* | |
C9 | 0.60922 (12) | 0.0599 (2) | 0.0540 (5) | 0.0282 (5) | |
H9 | 0.642008 | −0.017145 | 0.053144 | 0.034* | |
C10 | 0.55693 (12) | 0.0730 (2) | −0.1110 (5) | 0.0276 (5) | |
H10 | 0.553393 | 0.005274 | −0.226127 | 0.033* | |
C11 | 0.51001 (12) | 0.1869 (2) | −0.1042 (5) | 0.0252 (5) | |
H11 | 0.474376 | 0.195559 | −0.217400 | 0.030* | |
N1 | 0.60295 (9) | 0.50362 (19) | 0.6733 (3) | 0.0207 (4) | |
H1N | 0.5663 (14) | 0.573 (3) | 0.629 (5) | 0.025* | |
N2 | 0.60975 (9) | 0.38992 (19) | 0.5354 (3) | 0.0200 (4) | |
N3 | 0.51261 (10) | 0.2853 (2) | 0.0546 (4) | 0.0222 (4) | |
O1 | 0.62639 (9) | 0.60967 (18) | 0.9963 (3) | 0.0263 (4) | |
S1 | 0.74058 (3) | 0.29964 (5) | 0.72453 (13) | 0.02379 (16) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0204 (9) | 0.0272 (11) | 0.0252 (13) | 0.0009 (8) | −0.0035 (9) | −0.0004 (11) |
C2 | 0.0236 (10) | 0.0273 (10) | 0.0209 (12) | −0.0006 (9) | −0.0040 (9) | −0.0004 (10) |
C3 | 0.0180 (9) | 0.0194 (9) | 0.0302 (14) | 0.0013 (7) | 0.0020 (9) | 0.0050 (10) |
C4 | 0.0203 (8) | 0.0214 (9) | 0.0177 (11) | −0.0019 (7) | 0.0025 (8) | 0.0003 (9) |
C5 | 0.0201 (9) | 0.0217 (9) | 0.0184 (11) | −0.0016 (7) | 0.0022 (8) | 0.0005 (9) |
C6 | 0.0180 (8) | 0.0250 (10) | 0.0213 (11) | 0.0017 (7) | −0.0001 (9) | −0.0007 (9) |
C7 | 0.0177 (8) | 0.0244 (10) | 0.0200 (11) | −0.0014 (7) | −0.0005 (10) | 0.0021 (11) |
C8 | 0.0205 (9) | 0.0279 (10) | 0.0258 (12) | 0.0017 (7) | −0.0027 (10) | 0.0002 (12) |
C9 | 0.0268 (10) | 0.0272 (11) | 0.0307 (14) | 0.0061 (9) | 0.0010 (10) | −0.0019 (11) |
C10 | 0.0275 (10) | 0.0281 (11) | 0.0271 (14) | −0.0002 (9) | 0.0022 (10) | −0.0066 (10) |
C11 | 0.0221 (9) | 0.0306 (11) | 0.0229 (13) | 0.0000 (8) | −0.0032 (10) | −0.0009 (10) |
N1 | 0.0199 (8) | 0.0231 (8) | 0.0189 (11) | 0.0017 (7) | 0.0003 (7) | −0.0012 (8) |
N2 | 0.0181 (7) | 0.0239 (8) | 0.0178 (9) | −0.0005 (6) | 0.0010 (7) | 0.0006 (8) |
N3 | 0.0202 (8) | 0.0262 (9) | 0.0203 (11) | 0.0011 (6) | −0.0014 (8) | −0.0003 (8) |
O1 | 0.0283 (8) | 0.0284 (8) | 0.0222 (10) | 0.0038 (6) | −0.0002 (7) | −0.0046 (7) |
S1 | 0.0226 (2) | 0.0288 (3) | 0.0200 (3) | 0.00348 (18) | −0.0016 (3) | −0.0026 (3) |
C1—C2 | 1.365 (4) | C6—H6 | 0.9500 |
C1—S1 | 1.702 (2) | C7—N3 | 1.345 (3) |
C1—H1 | 0.9500 | C7—C8 | 1.404 (3) |
C2—C3 | 1.434 (3) | C8—C9 | 1.381 (4) |
C2—H2 | 0.9500 | C8—H8 | 0.9500 |
C3—C4 | 1.415 (3) | C9—C10 | 1.390 (4) |
C3—H3 | 0.9500 | C9—H9 | 0.9500 |
C4—C5 | 1.485 (3) | C10—C11 | 1.387 (3) |
C4—S1 | 1.728 (2) | C10—H10 | 0.9500 |
C5—O1 | 1.232 (3) | C11—N3 | 1.341 (3) |
C5—N1 | 1.361 (3) | C11—H11 | 0.9500 |
C6—N2 | 1.284 (3) | N1—N2 | 1.371 (3) |
C6—C7 | 1.463 (3) | N1—H1N | 0.98 (3) |
C2—C1—S1 | 113.11 (17) | C8—C7—C6 | 123.1 (2) |
C2—C1—H1 | 123.4 | C9—C8—C7 | 118.3 (2) |
S1—C1—H1 | 123.4 | C9—C8—H8 | 120.8 |
C1—C2—C3 | 113.4 (2) | C7—C8—H8 | 120.8 |
C1—C2—H2 | 123.3 | C8—C9—C10 | 119.3 (2) |
C3—C2—H2 | 123.3 | C8—C9—H9 | 120.4 |
C4—C3—C2 | 109.9 (2) | C10—C9—H9 | 120.4 |
C4—C3—H3 | 125.1 | C11—C10—C9 | 118.7 (2) |
C2—C3—H3 | 125.1 | C11—C10—H10 | 120.6 |
C3—C4—C5 | 121.3 (2) | C9—C10—H10 | 120.6 |
C3—C4—S1 | 112.16 (16) | N3—C11—C10 | 123.0 (2) |
C5—C4—S1 | 126.50 (18) | N3—C11—H11 | 118.5 |
O1—C5—N1 | 119.15 (19) | C10—C11—H11 | 118.5 |
O1—C5—C4 | 120.7 (2) | C5—N1—N2 | 122.15 (18) |
N1—C5—C4 | 120.1 (2) | C5—N1—H1N | 122.2 (17) |
N2—C6—C7 | 121.55 (19) | N2—N1—H1N | 115.5 (17) |
N2—C6—H6 | 119.2 | C6—N2—N1 | 114.55 (19) |
C7—C6—H6 | 119.2 | C11—N3—C7 | 117.90 (19) |
N3—C7—C8 | 122.7 (2) | C1—S1—C4 | 91.48 (12) |
N3—C7—C6 | 114.14 (18) | ||
S1—C1—C2—C3 | −1.8 (3) | C8—C9—C10—C11 | 0.0 (4) |
C1—C2—C3—C4 | 1.0 (3) | C9—C10—C11—N3 | −0.1 (4) |
C2—C3—C4—C5 | −176.80 (19) | O1—C5—N1—N2 | −169.81 (19) |
C2—C3—C4—S1 | 0.2 (2) | C4—C5—N1—N2 | 12.0 (3) |
C3—C4—C5—O1 | 5.8 (3) | C7—C6—N2—N1 | −179.61 (19) |
S1—C4—C5—O1 | −170.67 (17) | C5—N1—N2—C6 | 173.74 (19) |
C3—C4—C5—N1 | −176.02 (19) | C10—C11—N3—C7 | 1.0 (3) |
S1—C4—C5—N1 | 7.5 (3) | C8—C7—N3—C11 | −1.9 (3) |
N2—C6—C7—N3 | 179.2 (2) | C6—C7—N3—C11 | 178.0 (2) |
N2—C6—C7—C8 | −1.0 (4) | C2—C1—S1—C4 | 1.60 (19) |
N3—C7—C8—C9 | 1.8 (4) | C3—C4—S1—C1 | −0.99 (17) |
C6—C7—C8—C9 | −178.0 (2) | C5—C4—S1—C1 | 175.80 (19) |
C7—C8—C9—C10 | −0.8 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···N3i | 0.98 (3) | 2.03 (3) | 3.013 (3) | 177 (3) |
C1—H1···O1ii | 0.95 | 2.48 | 3.101 (3) | 123 |
C2—H2···O1iii | 0.95 | 2.64 | 3.410 (3) | 139 |
Symmetry codes: (i) −x+1, −y+1, z+1/2; (ii) −x+3/2, y−1/2, z−1/2; (iii) −x+3/2, y−1/2, z+1/2. |
C12H11N3OS | F(000) = 1024 |
Mr = 245.30 | Dx = 1.437 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
a = 21.0690 (15) Å | Cell parameters from 7400 reflections |
b = 5.1085 (4) Å | θ = 2.9–27.5° |
c = 21.1531 (15) Å | µ = 0.27 mm−1 |
β = 95.265 (2)° | T = 100 K |
V = 2267.1 (3) Å3 | Lath, colourless |
Z = 8 | 0.42 × 0.12 × 0.03 mm |
Rigaku Saturn724+ CCD diffractometer | 2307 reflections with I > 2σ(I) |
ω scans | Rint = 0.022 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2012) | θmax = 27.5°, θmin = 2.9° |
Tmin = 0.780, Tmax = 1.000 | h = −27→27 |
8717 measured reflections | k = −6→6 |
2563 independent reflections | l = −27→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.031 | H-atom parameters constrained |
wR(F2) = 0.087 | w = 1/[σ2(Fo2) + (0.0408P)2 + 2.1991P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.001 |
2563 reflections | Δρmax = 0.33 e Å−3 |
155 parameters | Δρmin = −0.29 e Å−3 |
0 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.50199 (7) | 0.8774 (3) | 0.34463 (7) | 0.0262 (3) | |
H1 | 0.525890 | 0.988871 | 0.319795 | 0.031* | |
C2 | 0.50475 (7) | 0.8871 (3) | 0.40904 (7) | 0.0283 (3) | |
H2 | 0.530839 | 1.006088 | 0.434266 | 0.034* | |
C3 | 0.46445 (6) | 0.7003 (3) | 0.43432 (6) | 0.0243 (3) | |
H3 | 0.460459 | 0.680014 | 0.478420 | 0.029* | |
C4 | 0.43135 (6) | 0.5499 (3) | 0.38752 (6) | 0.0196 (3) | |
C5 | 0.38600 (6) | 0.3464 (3) | 0.40503 (6) | 0.0206 (3) | |
C6 | 0.30541 (6) | 0.0098 (3) | 0.37672 (6) | 0.0229 (3) | |
H6A | 0.306676 | 0.001379 | 0.423104 | 0.034* | |
H6B | 0.316415 | −0.161776 | 0.360136 | 0.034* | |
H6C | 0.262463 | 0.059115 | 0.359010 | 0.034* | |
C7 | 0.32615 (6) | 0.1249 (3) | 0.25363 (6) | 0.0190 (3) | |
H7 | 0.298098 | −0.007769 | 0.265792 | 0.023* | |
C8 | 0.33189 (6) | 0.1729 (2) | 0.18583 (6) | 0.0178 (3) | |
C9 | 0.36845 (6) | 0.3762 (3) | 0.16384 (6) | 0.0197 (3) | |
H9 | 0.392055 | 0.489970 | 0.192720 | 0.024* | |
C10 | 0.36941 (6) | 0.4078 (3) | 0.09876 (6) | 0.0222 (3) | |
H10 | 0.393440 | 0.545017 | 0.082220 | 0.027* | |
C11 | 0.33481 (7) | 0.2364 (3) | 0.05837 (6) | 0.0247 (3) | |
H11 | 0.334717 | 0.253470 | 0.013642 | 0.030* | |
C12 | 0.30036 (7) | 0.0398 (3) | 0.08438 (6) | 0.0266 (3) | |
H12 | 0.277110 | −0.078189 | 0.056315 | 0.032* | |
N1 | 0.35096 (5) | 0.2040 (2) | 0.35878 (5) | 0.0194 (2) | |
N2 | 0.35836 (5) | 0.2591 (2) | 0.29655 (5) | 0.0176 (2) | |
N3 | 0.29791 (6) | 0.0063 (2) | 0.14694 (5) | 0.0234 (3) | |
O1 | 0.37945 (5) | 0.3068 (2) | 0.46105 (4) | 0.0291 (2) | |
S1 | 0.45075 (2) | 0.64215 (7) | 0.31337 (2) | 0.02308 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0201 (7) | 0.0236 (7) | 0.0350 (8) | −0.0028 (6) | 0.0027 (5) | −0.0049 (6) |
C2 | 0.0219 (7) | 0.0273 (7) | 0.0349 (8) | 0.0015 (6) | −0.0020 (6) | −0.0129 (6) |
C3 | 0.0227 (7) | 0.0279 (7) | 0.0223 (6) | 0.0052 (6) | 0.0015 (5) | −0.0055 (5) |
C4 | 0.0183 (6) | 0.0220 (6) | 0.0185 (6) | 0.0042 (5) | 0.0015 (5) | −0.0022 (5) |
C5 | 0.0210 (6) | 0.0229 (6) | 0.0180 (6) | 0.0061 (5) | 0.0026 (5) | −0.0006 (5) |
C6 | 0.0203 (6) | 0.0253 (7) | 0.0234 (6) | −0.0005 (6) | 0.0038 (5) | 0.0070 (5) |
C7 | 0.0185 (6) | 0.0182 (6) | 0.0204 (6) | 0.0001 (5) | 0.0031 (5) | 0.0018 (5) |
C8 | 0.0167 (6) | 0.0178 (6) | 0.0188 (6) | 0.0023 (5) | 0.0010 (4) | −0.0002 (5) |
C9 | 0.0181 (6) | 0.0218 (6) | 0.0191 (6) | −0.0008 (5) | 0.0010 (5) | −0.0009 (5) |
C10 | 0.0216 (6) | 0.0239 (7) | 0.0218 (6) | −0.0010 (5) | 0.0049 (5) | 0.0010 (5) |
C11 | 0.0293 (7) | 0.0281 (7) | 0.0171 (6) | 0.0017 (6) | 0.0042 (5) | −0.0019 (5) |
C12 | 0.0335 (8) | 0.0240 (7) | 0.0218 (6) | −0.0036 (6) | 0.0006 (5) | −0.0061 (5) |
N1 | 0.0189 (5) | 0.0237 (6) | 0.0158 (5) | −0.0006 (4) | 0.0024 (4) | 0.0035 (4) |
N2 | 0.0175 (5) | 0.0200 (5) | 0.0155 (5) | 0.0018 (4) | 0.0024 (4) | 0.0020 (4) |
N3 | 0.0281 (6) | 0.0200 (6) | 0.0218 (5) | −0.0030 (5) | 0.0008 (4) | −0.0022 (4) |
O1 | 0.0378 (6) | 0.0339 (6) | 0.0161 (4) | 0.0009 (5) | 0.0051 (4) | 0.0002 (4) |
S1 | 0.02249 (19) | 0.02627 (19) | 0.02056 (18) | −0.00532 (13) | 0.00245 (12) | −0.00153 (12) |
C1—C2 | 1.359 (2) | C7—N2 | 1.2815 (17) |
C1—S1 | 1.7075 (14) | C7—C8 | 1.4709 (17) |
C1—H1 | 0.9500 | C7—H7 | 0.9500 |
C2—C3 | 1.414 (2) | C8—N3 | 1.3436 (17) |
C2—H2 | 0.9500 | C8—C9 | 1.3981 (18) |
C3—C4 | 1.3894 (19) | C9—C10 | 1.3879 (18) |
C3—H3 | 0.9500 | C9—H9 | 0.9500 |
C4—C5 | 1.4817 (19) | C10—C11 | 1.3835 (19) |
C4—S1 | 1.7223 (13) | C10—H10 | 0.9500 |
C5—O1 | 1.2225 (16) | C11—C12 | 1.382 (2) |
C5—N1 | 1.3780 (17) | C11—H11 | 0.9500 |
C6—N1 | 1.4545 (17) | C12—N3 | 1.3400 (17) |
C6—H6A | 0.9800 | C12—H12 | 0.9500 |
C6—H6B | 0.9800 | N1—N2 | 1.3690 (14) |
C6—H6C | 0.9800 | ||
C2—C1—S1 | 112.41 (11) | C8—C7—H7 | 119.5 |
C2—C1—H1 | 123.8 | N3—C8—C9 | 123.07 (11) |
S1—C1—H1 | 123.8 | N3—C8—C7 | 113.86 (11) |
C1—C2—C3 | 112.48 (13) | C9—C8—C7 | 123.06 (11) |
C1—C2—H2 | 123.8 | C10—C9—C8 | 118.36 (12) |
C3—C2—H2 | 123.8 | C10—C9—H9 | 120.8 |
C4—C3—C2 | 112.53 (12) | C8—C9—H9 | 120.8 |
C4—C3—H3 | 123.7 | C11—C10—C9 | 118.95 (13) |
C2—C3—H3 | 123.7 | C11—C10—H10 | 120.5 |
C3—C4—C5 | 120.19 (12) | C9—C10—H10 | 120.5 |
C3—C4—S1 | 110.61 (10) | C12—C11—C10 | 118.69 (12) |
C5—C4—S1 | 129.19 (10) | C12—C11—H11 | 120.7 |
O1—C5—N1 | 120.00 (13) | C10—C11—H11 | 120.7 |
O1—C5—C4 | 119.42 (12) | N3—C12—C11 | 123.71 (13) |
N1—C5—C4 | 120.58 (11) | N3—C12—H12 | 118.1 |
N1—C6—H6A | 109.5 | C11—C12—H12 | 118.1 |
N1—C6—H6B | 109.5 | N2—N1—C5 | 118.24 (11) |
H6A—C6—H6B | 109.5 | N2—N1—C6 | 121.81 (11) |
N1—C6—H6C | 109.5 | C5—N1—C6 | 119.89 (11) |
H6A—C6—H6C | 109.5 | C7—N2—N1 | 118.14 (11) |
H6B—C6—H6C | 109.5 | C12—N3—C8 | 117.20 (12) |
N2—C7—C8 | 121.06 (12) | C1—S1—C4 | 91.97 (7) |
N2—C7—H7 | 119.5 | ||
S1—C1—C2—C3 | −0.08 (16) | C10—C11—C12—N3 | 0.7 (2) |
C1—C2—C3—C4 | 0.02 (18) | O1—C5—N1—N2 | 178.23 (11) |
C2—C3—C4—C5 | −179.06 (12) | C4—C5—N1—N2 | −1.19 (18) |
C2—C3—C4—S1 | 0.04 (15) | O1—C5—N1—C6 | 1.06 (19) |
C3—C4—C5—O1 | −2.21 (19) | C4—C5—N1—C6 | −178.37 (11) |
S1—C4—C5—O1 | 178.88 (10) | C8—C7—N2—N1 | −179.79 (11) |
C3—C4—C5—N1 | 177.22 (12) | C5—N1—N2—C7 | 179.40 (12) |
S1—C4—C5—N1 | −1.69 (19) | C6—N1—N2—C7 | −3.49 (18) |
N2—C7—C8—N3 | 176.35 (12) | C11—C12—N3—C8 | −1.0 (2) |
N2—C7—C8—C9 | −4.8 (2) | C9—C8—N3—C12 | 0.5 (2) |
N3—C8—C9—C10 | 0.3 (2) | C7—C8—N3—C12 | 179.38 (12) |
C7—C8—C9—C10 | −178.51 (12) | C2—C1—S1—C4 | 0.09 (12) |
C8—C9—C10—C11 | −0.6 (2) | C3—C4—S1—C1 | −0.07 (11) |
C9—C10—C11—C12 | 0.1 (2) | C5—C4—S1—C1 | 178.92 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9···S1 | 0.95 | 2.84 | 3.7217 (13) | 155 |
C6—H6C···N3i | 0.98 | 2.61 | 3.3499 (18) | 132 |
Symmetry code: (i) −x+1/2, y+1/2, −z+1/2. |
C12H11N3OS | F(000) = 512 |
Mr = 245.30 | Dx = 1.414 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 11.3963 (8) Å | Cell parameters from 43879 reflections |
b = 9.2782 (7) Å | θ = 2.9–27.5° |
c = 11.8178 (8) Å | µ = 0.27 mm−1 |
β = 112.761 (2)° | T = 100 K |
V = 1152.27 (14) Å3 | Block, colourless |
Z = 4 | 0.10 × 0.09 × 0.06 mm |
Rigaku AFC12 CCD diffractometer | 2138 reflections with I > 2σ(I) |
ω scans | Rint = 0.031 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2012) | θmax = 28.4°, θmin = 2.9° |
Tmin = 0.723, Tmax = 1.000 | h = −15→14 |
8155 measured reflections | k = −12→11 |
2593 independent reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.041 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.112 | w = 1/[σ2(Fo2) + (0.0505P)2 + 0.7045P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
2593 reflections | Δρmax = 0.32 e Å−3 |
170 parameters | Δρmin = −0.30 e Å−3 |
10 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.9466 (2) | 0.7136 (3) | 0.2749 (2) | 0.0222 (5) | 0.851 (2) |
H1 | 1.033688 | 0.689483 | 0.317920 | 0.027* | 0.851 (2) |
C2 | 0.8750 (2) | 0.6617 (3) | 0.1571 (2) | 0.0203 (5) | 0.851 (2) |
H2 | 0.905946 | 0.598307 | 0.111806 | 0.024* | 0.851 (2) |
C3 | 0.7527 (8) | 0.7158 (11) | 0.1161 (7) | 0.0246 (10) | 0.851 (2) |
H3 | 0.689801 | 0.695835 | 0.037087 | 0.029* | 0.851 (2) |
C4 | 0.73066 (15) | 0.80326 (17) | 0.20255 (15) | 0.0211 (3) | 0.851 (2) |
S1 | 0.86521 (5) | 0.82422 (7) | 0.33564 (5) | 0.02360 (18) | 0.851 (2) |
C1B | 0.8982 (14) | 0.684 (2) | 0.1833 (17) | 0.0203 (5) | 0.149 (2) |
H1B | 0.956589 | 0.632055 | 0.158977 | 0.024* | 0.149 (2) |
C2B | 0.9327 (13) | 0.7537 (17) | 0.2944 (14) | 0.0222 (5) | 0.149 (2) |
H2B | 1.015819 | 0.750408 | 0.356806 | 0.027* | 0.149 (2) |
C3B | 0.8327 (13) | 0.829 (2) | 0.3049 (14) | 0.02360 (18) | 0.149 (2) |
H3B | 0.836035 | 0.888345 | 0.371821 | 0.028* | 0.149 (2) |
C4B | 0.73066 (15) | 0.80326 (17) | 0.20255 (15) | 0.0211 (3) | 0.149 (2) |
S1B | 0.7385 (12) | 0.6996 (17) | 0.0929 (12) | 0.0246 (10) | 0.149 (2) |
C5 | 0.61018 (15) | 0.86577 (18) | 0.19459 (16) | 0.0231 (3) | |
H5A | 0.553207 | 0.878920 | 0.107425 | 0.028* | |
H5B | 0.625573 | 0.961417 | 0.234861 | 0.028* | |
C6 | 0.54702 (14) | 0.76587 (17) | 0.25759 (15) | 0.0206 (3) | |
C7 | 0.35889 (15) | 0.83579 (18) | 0.42527 (15) | 0.0223 (3) | |
H7 | 0.359384 | 0.937962 | 0.420223 | 0.027* | |
C8 | 0.28771 (14) | 0.76417 (18) | 0.49016 (15) | 0.0207 (3) | |
C9 | 0.27577 (15) | 0.61405 (19) | 0.49162 (16) | 0.0243 (4) | |
H9 | 0.314773 | 0.554343 | 0.450832 | 0.029* | |
C10 | 0.20629 (15) | 0.55382 (19) | 0.55336 (16) | 0.0271 (4) | |
H10 | 0.197174 | 0.452251 | 0.556146 | 0.033* | |
C11 | 0.14999 (16) | 0.64555 (19) | 0.61139 (16) | 0.0260 (4) | |
H11 | 0.101007 | 0.607862 | 0.653853 | 0.031* | |
C12 | 0.16714 (16) | 0.79323 (19) | 0.60568 (17) | 0.0267 (4) | |
H12 | 0.129255 | 0.854810 | 0.646226 | 0.032* | |
N1 | 0.48282 (13) | 0.83765 (15) | 0.31638 (13) | 0.0211 (3) | |
H1N | 0.4714 (18) | 0.932 (2) | 0.3080 (18) | 0.025* | |
N2 | 0.42014 (12) | 0.76009 (15) | 0.37563 (13) | 0.0213 (3) | |
N3 | 0.23384 (13) | 0.85429 (16) | 0.54651 (13) | 0.0247 (3) | |
O1 | 0.55355 (11) | 0.63460 (13) | 0.25449 (13) | 0.0280 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0172 (8) | 0.0271 (13) | 0.0254 (12) | 0.0030 (8) | 0.0118 (7) | 0.0006 (9) |
C2 | 0.0203 (11) | 0.0209 (13) | 0.0221 (14) | −0.0002 (9) | 0.0109 (10) | −0.0036 (8) |
C3 | 0.0205 (18) | 0.024 (2) | 0.028 (3) | −0.0032 (14) | 0.0080 (19) | −0.0029 (17) |
C4 | 0.0196 (7) | 0.0194 (7) | 0.0245 (8) | −0.0023 (6) | 0.0088 (6) | 0.0032 (6) |
S1 | 0.0191 (3) | 0.0280 (3) | 0.0230 (3) | −0.0014 (2) | 0.0073 (2) | −0.0037 (2) |
C1B | 0.0203 (11) | 0.0209 (13) | 0.0221 (14) | −0.0002 (9) | 0.0109 (10) | −0.0036 (8) |
C2B | 0.0172 (8) | 0.0271 (13) | 0.0254 (12) | 0.0030 (8) | 0.0118 (7) | 0.0006 (9) |
C3B | 0.0191 (3) | 0.0280 (3) | 0.0230 (3) | −0.0014 (2) | 0.0073 (2) | −0.0037 (2) |
C4B | 0.0196 (7) | 0.0194 (7) | 0.0245 (8) | −0.0023 (6) | 0.0088 (6) | 0.0032 (6) |
S1B | 0.0205 (18) | 0.024 (2) | 0.028 (3) | −0.0032 (14) | 0.0080 (19) | −0.0029 (17) |
C5 | 0.0204 (7) | 0.0176 (7) | 0.0319 (9) | −0.0002 (6) | 0.0108 (6) | 0.0024 (7) |
C6 | 0.0164 (6) | 0.0194 (8) | 0.0244 (8) | −0.0001 (6) | 0.0061 (6) | 0.0011 (6) |
C7 | 0.0219 (7) | 0.0192 (8) | 0.0251 (8) | 0.0000 (6) | 0.0083 (6) | 0.0006 (6) |
C8 | 0.0181 (7) | 0.0218 (8) | 0.0211 (8) | 0.0005 (6) | 0.0064 (6) | −0.0013 (6) |
C9 | 0.0212 (7) | 0.0231 (8) | 0.0298 (9) | 0.0009 (6) | 0.0112 (6) | −0.0033 (7) |
C10 | 0.0224 (7) | 0.0222 (8) | 0.0354 (10) | −0.0002 (6) | 0.0098 (7) | 0.0021 (7) |
C11 | 0.0239 (7) | 0.0267 (9) | 0.0286 (9) | −0.0009 (6) | 0.0114 (7) | 0.0032 (7) |
C12 | 0.0273 (8) | 0.0277 (9) | 0.0300 (9) | 0.0014 (7) | 0.0163 (7) | −0.0025 (7) |
N1 | 0.0213 (6) | 0.0168 (6) | 0.0271 (7) | 0.0006 (5) | 0.0114 (6) | 0.0015 (5) |
N2 | 0.0183 (6) | 0.0211 (7) | 0.0244 (7) | −0.0007 (5) | 0.0081 (5) | 0.0013 (5) |
N3 | 0.0247 (6) | 0.0225 (7) | 0.0290 (8) | 0.0012 (5) | 0.0128 (6) | −0.0003 (6) |
O1 | 0.0267 (6) | 0.0161 (6) | 0.0475 (8) | −0.0002 (5) | 0.0214 (6) | 0.0000 (5) |
C1—C2 | 1.399 (3) | C5—H5A | 0.9900 |
C1—S1 | 1.716 (2) | C5—H5B | 0.9900 |
C1—H1 | 0.9500 | C6—O1 | 1.222 (2) |
C2—C3 | 1.380 (8) | C6—N1 | 1.362 (2) |
C2—H2 | 0.9500 | C7—N2 | 1.281 (2) |
C3—C4 | 1.401 (7) | C7—C8 | 1.473 (2) |
C3—H3 | 0.9500 | C7—H7 | 0.9500 |
C4—C5 | 1.460 (2) | C8—N3 | 1.355 (2) |
C4—S1 | 1.7311 (16) | C8—C9 | 1.400 (2) |
C1B—C2B | 1.379 (15) | C9—C10 | 1.385 (2) |
C1B—S1B | 1.723 (16) | C9—H9 | 0.9500 |
C1B—H1B | 0.9500 | C10—C11 | 1.395 (2) |
C2B—C3B | 1.384 (15) | C10—H10 | 0.9500 |
C2B—H2B | 0.9500 | C11—C12 | 1.389 (2) |
C3B—C4B | 1.337 (13) | C11—H11 | 0.9500 |
C3B—H3B | 0.9500 | C12—N3 | 1.341 (2) |
C4B—C5 | 1.460 (2) | C12—H12 | 0.9500 |
C4B—S1B | 1.643 (11) | N1—N2 | 1.3804 (19) |
C5—C6 | 1.532 (2) | N1—H1N | 0.88 (2) |
C2—C1—S1 | 114.85 (18) | C4—C5—H5B | 109.8 |
C2—C1—H1 | 122.6 | C6—C5—H5B | 109.8 |
S1—C1—H1 | 122.6 | H5A—C5—H5B | 108.2 |
C3—C2—C1 | 110.2 (3) | O1—C6—N1 | 123.63 (15) |
C3—C2—H2 | 124.9 | O1—C6—C5 | 122.90 (15) |
C1—C2—H2 | 124.9 | N1—C6—C5 | 113.47 (14) |
C2—C3—C4 | 113.4 (5) | N2—C7—C8 | 119.90 (15) |
C2—C3—H3 | 123.3 | N2—C7—H7 | 120.1 |
C4—C3—H3 | 123.3 | C8—C7—H7 | 120.1 |
C3—C4—C5 | 127.8 (3) | N3—C8—C9 | 122.90 (15) |
C3—C4—S1 | 112.4 (3) | N3—C8—C7 | 115.03 (15) |
C5—C4—S1 | 119.63 (13) | C9—C8—C7 | 122.07 (15) |
C1—S1—C4 | 89.14 (10) | C10—C9—C8 | 119.07 (16) |
C2B—C1B—S1B | 113.1 (12) | C10—C9—H9 | 120.5 |
C2B—C1B—H1B | 123.4 | C8—C9—H9 | 120.5 |
S1B—C1B—H1B | 123.4 | C9—C10—C11 | 118.56 (16) |
C1B—C2B—C3B | 112.6 (13) | C9—C10—H10 | 120.7 |
C1B—C2B—H2B | 123.7 | C11—C10—H10 | 120.7 |
C3B—C2B—H2B | 123.7 | C12—C11—C10 | 118.53 (16) |
C4B—C3B—C2B | 106.5 (12) | C12—C11—H11 | 120.7 |
C4B—C3B—H3B | 126.7 | C10—C11—H11 | 120.7 |
C2B—C3B—H3B | 126.7 | N3—C12—C11 | 124.09 (16) |
C3B—C4B—C5 | 117.0 (7) | N3—C12—H12 | 118.0 |
C3B—C4B—S1B | 121.7 (7) | C11—C12—H12 | 118.0 |
C5—C4B—S1B | 121.2 (4) | C6—N1—N2 | 119.30 (13) |
C4B—S1B—C1B | 85.9 (8) | C6—N1—H1N | 120.7 (13) |
C4B—C5—C6 | 109.60 (13) | N2—N1—H1N | 119.4 (13) |
C4—C5—C6 | 109.60 (13) | C7—N2—N1 | 115.27 (14) |
C4—C5—H5A | 109.8 | C12—N3—C8 | 116.84 (15) |
C6—C5—H5A | 109.8 | ||
S1—C1—C2—C3 | 1.1 (6) | C4B—C5—C6—O1 | −35.6 (2) |
C1—C2—C3—C4 | −2.0 (9) | C4—C5—C6—O1 | −35.6 (2) |
C2—C3—C4—C5 | −173.4 (4) | C4B—C5—C6—N1 | 144.72 (14) |
C2—C3—C4—S1 | 2.1 (9) | C4—C5—C6—N1 | 144.72 (14) |
C2—C1—S1—C4 | 0.1 (2) | N2—C7—C8—N3 | 175.58 (14) |
C3—C4—S1—C1 | −1.2 (5) | N2—C7—C8—C9 | −5.2 (2) |
C5—C4—S1—C1 | 174.74 (15) | N3—C8—C9—C10 | −0.2 (2) |
S1B—C1B—C2B—C3B | −4 (2) | C7—C8—C9—C10 | −179.31 (15) |
C1B—C2B—C3B—C4B | 3 (2) | C8—C9—C10—C11 | 0.4 (2) |
C2B—C3B—C4B—C5 | 176.8 (10) | C9—C10—C11—C12 | −0.6 (2) |
C2B—C3B—C4B—S1B | −0.5 (19) | C10—C11—C12—N3 | 0.7 (3) |
C3B—C4B—S1B—C1B | −1.5 (16) | O1—C6—N1—N2 | −0.5 (2) |
C5—C4B—S1B—C1B | −178.7 (8) | C5—C6—N1—N2 | 179.18 (13) |
C2B—C1B—S1B—C4B | 3.1 (18) | C8—C7—N2—N1 | 179.54 (13) |
C3B—C4B—C5—C6 | −84.9 (10) | C6—N1—N2—C7 | −177.90 (14) |
S1B—C4B—C5—C6 | 92.4 (7) | C11—C12—N3—C8 | −0.5 (3) |
C3—C4—C5—C6 | 93.8 (6) | C9—C8—N3—C12 | 0.2 (2) |
S1—C4—C5—C6 | −81.44 (16) | C7—C8—N3—C12 | 179.39 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.88 (2) | 2.00 (2) | 2.8628 (18) | 164.9 (18) |
C3—H3···N1ii | 0.95 | 2.78 | 3.718 (7) | 172 |
C5—H5B···O1i | 0.99 | 2.64 | 3.307 (2) | 125 |
C7—H7···S1Bi | 0.95 | 2.65 | 3.534 (16) | 155 |
C12—H12···S1iii | 0.95 | 2.98 | 3.6624 (19) | 129 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x, −y+3/2, z−1/2; (iii) −x+1, −y+2, −z+1. |
Contact type | (I) | (II) | (III) | (IV)a |
H···H | 30.1 | 32.8 | 36.5 | 34.5 |
C···H/H···C | 15.1 | 23.3 | 28.2 | 22.6 |
O···H/H···O | 13.1 | 12.8 | 10.4 | 11.2 |
N···H/H···N | 13.7 | 12.2 | 11.5 | 13.8 |
S···H/H···S | 12.1 | 7.0 | 5.8 | 10.7 |
C···C | 6.2 | 4.5 | 1.8 | 1.2 |
C···O/O···C | 1.3 | 0.8 | 0.7 | 1.0 |
O···O | 0.0 | 0.0 | 0.0 | 0.0 |
Note: (a) Major disorder component. |
Acknowledgements
We thank the EPSRC National Crystallography Service (University of Southampton) for the X-ray data collections.
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