research communications
tert-butyl 3,6-diiodocarbazole-9-carboxylate
ofaDepartment of Chemistry, Grand Valley State University, Allendale, MI 49401, USA, and bCenter for Crystallographic Research, Department of Chemistry and Chemical Biology, Michigan State University, East Lansing, MI 48824, USA
*Correspondence e-mail: biross@gvsu.edu
The molecular structure of tert-butyl 3,6-diiodocarbazole-9-carboxylate, C17H15I2NO2, features a nearly planar 13-membered carbazole ring with C—I bond lengths of 2.092 (4) and 2.104 (4) Å. The carbamate group has key bond lengths of 1.404 (6) Å (N—C), 1.330 (5) Å (O—C), and 1.201 (6) Å (C=O). The crystal contains intermolecular π–π interactions, as well as both type I and type II intermolecular I⋯I interactions.
CCDC reference: 2247288
1. Chemical context
Derivatives of the carbazole ring system have been used in a wide variety of applications ranging from organic light-emitting diodes (Uoyama et al., 2012) to cell membrane targeting fluorescent probes (Wnag et al., 2023) to compounds that are able to influence the supramolecular structure of G-rich DNA sequences (Debnath et al., 2016). Our group's interest in this molecular entity was inspired by the work of de Bettencourt-Dias and co-workers who have used carbazole derivatives as antennas to sensitize the luminescence of lanthanide metals (Monteiro et al., 2017, 2018, 2020, 2022). Our group was working to derivatize carbazole for use in related lanthanide luminescence applications when compound I, a synthetic intermediate in our work, serendipitously crystallized in an NMR tube.
2. Structural commentary
The molecular structure of compound I is shown in Fig. 1 along with the atom-numbering scheme. The structure of this substituted carbazole has C—I bond lengths of 2.092 (4) and 2.104 (4) Å. The carbamate group has bond lengths of 1.404 (6) Å for N1—C1, 1.330 (5) Å for O2—C1, and 1.201 (6) Å for the carbonyl C1=O1. The N1—C1—O2 bond angle is 110.3 (4)°, and these atoms are roughly coplanar with the atoms of the aromatic system with a C8—N1—C1—O2 torsion angle of −7.3 (7)°. The 13-membered aromatic carbazole ring approaches planarity with an r.m.s. deviation of 0.007 Å where the atom C8 deviates the most from the calculated least-squares plane by 0.019 (4) Å.
3. Supramolecular features
In the crystal, molecules of the title compound form pillars via intermolecular π–π interactions that propagate parallel to the a axis; the centroid of the five-membered ring (N1/C2/C3/C9/C8) is denoted as Cg. These interactions have Cg⋯Cg distances of 3.484 (3) and 3.589 (3) Å with slippages of 1.028 and 1.376 Å and angles of 0.00 (3)° (Fig. 2; symmetry codes: −x + 1, −y + 1, −z + 1 and −x + 2, −y + 1, −z + 1). The supramolecular pillars are held together via both type I and type II intermolecular I⋯I interactions (Pedireddi et al., 1994; Figs. 3 and 4). The type I halogen–halogen interaction has a trans arrangement and exists between atoms C11—I2⋯I2(−x + 2, −y, –z + 2) with an angle of 147.68 (13)° and an I⋯I distance of 3.6630 (5) Å. The type II interaction is found between atoms C11—I2⋯I1(x + 1, y − 1, z) with an I⋯I distance of 3.8332 (5) Å and an angle of 46.69 (13)°.
4. Database survey
A search of the Cambridge Structure Database (CSD version 5.43 with updates through June 2022; Groom et al., 2016) for structures containing the carbazole ring system substituted with any halogen atom at the C5 and C11 positions (as numbered in Fig. 1) returned 101 hits. The structures CEYXAI (Malecki, 2018) and FUMLIK (Radula-Janik et al., 2015) are closely related to that of compound I with iodine atoms at the C5 and C11 positions, but where the nitrogen atom has been alkylated with either a butyl or benzyl group. Structure ECUNUM bears bromine atoms at the C5 and C11 positions with a phenylcarbamate group on the nitrogen atom (Duan et al., 2006). A derivative of compound I that bears two iodine atoms in the same positions and a hydrogen atom bonded to the nitrogen atom has been solved as structure YAYDUZ (Xie et al., 2012). Lastly, the di-iodo carbazole has been used as a ligand in a copper(I) complex as demonstrated by Kim and co-workers (ZASYUQ; Kim et al., 2017).
5. Synthesis and crystallization
The title compound was prepared according to the procedure published by Lee and co-workers (Moon et al., 2007). The compound was dissolved in CDCl3 and the crystals studied here grew as the solvent slowly evaporated from the NMR tube.
6. Refinement
Crystal data, data collection and structure . All hydrogen atoms bonded to carbon atoms were placed in calculated positions and refined as riding: C—H = 0.95–1.00 Å with Uiso(H) = 1.2Ueq(C) for aromatic hydrogen atoms and Uiso(H) = 1.5Ueq(C) for the hydrogen atoms of the methyl group.
details are summarized in Table 1Supporting information
CCDC reference: 2247288
https://doi.org/10.1107/S205698902300230X/wm5676sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S205698902300230X/wm5676Isup3.hkl
Supporting information file. DOI: https://doi.org/10.1107/S205698902300230X/wm5676Isup3.cml
Data collection: CrysAlis PRO (Oxford Diffraction, 2006); cell
CrysAlis PRO (Oxford Diffraction, 2006); data reduction: CrysAlis PRO (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL (Sheldrick, 2015b); molecular graphics: CrystalMaker (Palmer, 2007); software used to prepare material for publication: Olex2 (Dolomanov et al., 2009; Bourhis et al., 2015).C17H15I2NO2 | Z = 2 |
Mr = 519.10 | F(000) = 492 |
Triclinic, P1 | Dx = 1.960 Mg m−3 |
a = 6.9611 (3) Å | Cu Kα radiation, λ = 1.54184 Å |
b = 11.9737 (5) Å | Cell parameters from 6514 reflections |
c = 12.0697 (4) Å | θ = 4.1–79.3° |
α = 65.618 (4)° | µ = 28.13 mm−1 |
β = 78.588 (3)° | T = 100 K |
γ = 74.826 (4)° | Irregular, colourless |
V = 879.71 (7) Å3 | 0.11 × 0.06 × 0.02 mm |
XtaLAB Synergy, Dualflex, HyPix diffractometer | 3717 independent reflections |
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source | 3209 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.038 |
Detector resolution: 10.0000 pixels mm-1 | θmax = 80.0°, θmin = 4.0° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (CrysAlisPro; Oxford Diffraction, 2006) | k = −15→15 |
Tmin = 0.756, Tmax = 1.000 | l = −15→12 |
10800 measured reflections |
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.033 | H-atom parameters constrained |
wR(F2) = 0.090 | w = 1/[σ2(Fo2) + (0.0414P)2 + 2.1415P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max = 0.001 |
3717 reflections | Δρmax = 0.74 e Å−3 |
202 parameters | Δρmin = −1.17 e Å−3 |
0 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
I1 | 0.35523 (5) | 0.84654 (3) | 0.68070 (3) | 0.02553 (10) | |
I2 | 1.02078 (5) | 0.06482 (2) | 0.83259 (2) | 0.02519 (10) | |
O1 | 0.9081 (6) | 0.4713 (3) | 0.2038 (3) | 0.0308 (8) | |
O2 | 0.6990 (5) | 0.6592 (3) | 0.1740 (3) | 0.0229 (7) | |
N1 | 0.7721 (6) | 0.5314 (3) | 0.3644 (3) | 0.0176 (7) | |
C1 | 0.8021 (7) | 0.5484 (4) | 0.2405 (4) | 0.0216 (9) | |
C2 | 0.6704 (7) | 0.6182 (4) | 0.4183 (4) | 0.0177 (8) | |
C3 | 0.6784 (7) | 0.5579 (4) | 0.5462 (4) | 0.0178 (8) | |
C4 | 0.5909 (7) | 0.6212 (4) | 0.6236 (4) | 0.0199 (9) | |
H4 | 0.596672 | 0.580826 | 0.709538 | 0.024* | |
C5 | 0.4954 (7) | 0.7448 (4) | 0.5712 (4) | 0.0189 (8) | |
C6 | 0.4877 (7) | 0.8063 (4) | 0.4439 (4) | 0.0206 (9) | |
H6 | 0.423151 | 0.891758 | 0.410340 | 0.025* | |
C7 | 0.5745 (7) | 0.7422 (4) | 0.3669 (4) | 0.0194 (8) | |
H7 | 0.567988 | 0.782539 | 0.281049 | 0.023* | |
C8 | 0.8459 (6) | 0.4167 (4) | 0.4582 (4) | 0.0169 (8) | |
C9 | 0.7881 (6) | 0.4311 (4) | 0.5706 (4) | 0.0176 (8) | |
C10 | 0.8392 (7) | 0.3303 (4) | 0.6804 (4) | 0.0190 (8) | |
H10 | 0.802819 | 0.338279 | 0.757291 | 0.023* | |
C11 | 0.9449 (7) | 0.2191 (4) | 0.6707 (4) | 0.0201 (9) | |
C12 | 0.9994 (7) | 0.2046 (4) | 0.5597 (4) | 0.0207 (9) | |
H12 | 1.070569 | 0.125606 | 0.558551 | 0.025* | |
C13 | 0.9521 (7) | 0.3030 (4) | 0.4505 (4) | 0.0204 (9) | |
H13 | 0.989829 | 0.293776 | 0.374211 | 0.024* | |
C14 | 0.7063 (8) | 0.6986 (4) | 0.0389 (4) | 0.0244 (10) | |
C15 | 0.5773 (9) | 0.8287 (5) | 0.0027 (5) | 0.0332 (12) | |
H15A | 0.442886 | 0.824282 | 0.045892 | 0.050* | |
H15B | 0.568722 | 0.864481 | −0.085716 | 0.050* | |
H15C | 0.636703 | 0.881733 | 0.024436 | 0.050* | |
C16 | 0.9203 (9) | 0.7015 (5) | −0.0200 (5) | 0.0336 (12) | |
H16A | 0.980140 | 0.748546 | 0.009296 | 0.050* | |
H16B | 0.920443 | 0.742127 | −0.109047 | 0.050* | |
H16C | 0.998346 | 0.615734 | 0.001846 | 0.050* | |
C17 | 0.6131 (10) | 0.6110 (5) | 0.0144 (5) | 0.0351 (12) | |
H17A | 0.688431 | 0.525099 | 0.050166 | 0.053* | |
H17B | 0.616737 | 0.635693 | −0.074038 | 0.053* | |
H17C | 0.474017 | 0.615706 | 0.051213 | 0.053* |
U11 | U22 | U33 | U12 | U13 | U23 | |
I1 | 0.03315 (18) | 0.01775 (15) | 0.02357 (16) | 0.00301 (11) | −0.00265 (12) | −0.01080 (12) |
I2 | 0.03258 (18) | 0.01525 (15) | 0.01960 (16) | 0.00277 (11) | −0.00287 (11) | −0.00313 (11) |
O1 | 0.044 (2) | 0.0203 (16) | 0.0229 (16) | 0.0062 (15) | −0.0023 (15) | −0.0109 (14) |
O2 | 0.0316 (18) | 0.0177 (15) | 0.0150 (14) | 0.0022 (13) | −0.0047 (12) | −0.0053 (12) |
N1 | 0.0192 (18) | 0.0143 (16) | 0.0183 (17) | −0.0010 (14) | −0.0004 (14) | −0.0071 (14) |
C1 | 0.021 (2) | 0.017 (2) | 0.022 (2) | 0.0003 (17) | −0.0045 (17) | −0.0055 (18) |
C2 | 0.017 (2) | 0.017 (2) | 0.019 (2) | −0.0053 (16) | −0.0010 (16) | −0.0066 (16) |
C3 | 0.017 (2) | 0.016 (2) | 0.018 (2) | 0.0000 (16) | −0.0008 (16) | −0.0068 (16) |
C4 | 0.021 (2) | 0.016 (2) | 0.024 (2) | −0.0005 (16) | −0.0029 (17) | −0.0093 (17) |
C5 | 0.017 (2) | 0.016 (2) | 0.022 (2) | 0.0012 (16) | 0.0015 (16) | −0.0105 (17) |
C6 | 0.020 (2) | 0.016 (2) | 0.023 (2) | −0.0018 (16) | −0.0012 (17) | −0.0066 (17) |
C7 | 0.019 (2) | 0.016 (2) | 0.023 (2) | −0.0011 (16) | −0.0043 (16) | −0.0074 (17) |
C8 | 0.0157 (19) | 0.0137 (19) | 0.019 (2) | −0.0014 (15) | −0.0013 (15) | −0.0054 (16) |
C9 | 0.0150 (19) | 0.016 (2) | 0.021 (2) | −0.0013 (15) | 0.0015 (15) | −0.0076 (16) |
C10 | 0.018 (2) | 0.0145 (19) | 0.020 (2) | −0.0001 (16) | −0.0010 (16) | −0.0048 (17) |
C11 | 0.021 (2) | 0.0119 (19) | 0.023 (2) | 0.0024 (16) | −0.0087 (17) | −0.0025 (16) |
C12 | 0.022 (2) | 0.0156 (19) | 0.023 (2) | 0.0000 (16) | −0.0016 (17) | −0.0087 (17) |
C13 | 0.019 (2) | 0.017 (2) | 0.025 (2) | −0.0011 (16) | −0.0008 (17) | −0.0094 (17) |
C14 | 0.035 (3) | 0.021 (2) | 0.017 (2) | −0.0024 (19) | −0.0028 (18) | −0.0082 (18) |
C15 | 0.040 (3) | 0.023 (2) | 0.029 (3) | 0.006 (2) | −0.010 (2) | −0.007 (2) |
C16 | 0.040 (3) | 0.027 (3) | 0.029 (3) | −0.003 (2) | 0.005 (2) | −0.012 (2) |
C17 | 0.052 (4) | 0.028 (3) | 0.027 (3) | −0.009 (2) | −0.011 (2) | −0.009 (2) |
I1—C5 | 2.092 (4) | C9—C10 | 1.408 (6) |
I2—C11 | 2.104 (4) | C10—H10 | 0.9500 |
O1—C1 | 1.201 (6) | C10—C11 | 1.382 (6) |
O2—C1 | 1.330 (5) | C11—C12 | 1.388 (7) |
O2—C14 | 1.493 (5) | C12—H12 | 0.9500 |
N1—C1 | 1.404 (6) | C12—C13 | 1.386 (6) |
N1—C2 | 1.413 (6) | C13—H13 | 0.9500 |
N1—C8 | 1.416 (6) | C14—C15 | 1.512 (7) |
C2—C3 | 1.414 (6) | C14—C16 | 1.521 (8) |
C2—C7 | 1.385 (6) | C14—C17 | 1.516 (7) |
C3—C4 | 1.391 (6) | C15—H15A | 0.9800 |
C3—C9 | 1.446 (6) | C15—H15B | 0.9800 |
C4—H4 | 0.9500 | C15—H15C | 0.9800 |
C4—C5 | 1.383 (6) | C16—H16A | 0.9800 |
C5—C6 | 1.409 (6) | C16—H16B | 0.9800 |
C6—H6 | 0.9500 | C16—H16C | 0.9800 |
C6—C7 | 1.393 (6) | C17—H17A | 0.9800 |
C7—H7 | 0.9500 | C17—H17B | 0.9800 |
C8—C9 | 1.404 (6) | C17—H17C | 0.9800 |
C8—C13 | 1.400 (6) | ||
C1—O2—C14 | 120.3 (4) | C10—C11—I2 | 118.1 (3) |
C1—N1—C2 | 128.7 (4) | C10—C11—C12 | 122.9 (4) |
C1—N1—C8 | 122.7 (4) | C12—C11—I2 | 119.0 (3) |
C2—N1—C8 | 108.5 (3) | C11—C12—H12 | 119.4 |
O1—C1—O2 | 127.0 (4) | C13—C12—C11 | 121.3 (4) |
O1—C1—N1 | 122.8 (4) | C13—C12—H12 | 119.4 |
O2—C1—N1 | 110.3 (4) | C8—C13—H13 | 121.6 |
N1—C2—C3 | 108.2 (4) | C12—C13—C8 | 116.7 (4) |
C7—C2—N1 | 131.2 (4) | C12—C13—H13 | 121.6 |
C7—C2—C3 | 120.7 (4) | O2—C14—C15 | 101.9 (4) |
C2—C3—C9 | 107.3 (4) | O2—C14—C16 | 110.3 (4) |
C4—C3—C2 | 121.1 (4) | O2—C14—C17 | 108.4 (4) |
C4—C3—C9 | 131.6 (4) | C15—C14—C16 | 111.4 (4) |
C3—C4—H4 | 121.2 | C15—C14—C17 | 111.3 (5) |
C5—C4—C3 | 117.7 (4) | C17—C14—C16 | 113.0 (5) |
C5—C4—H4 | 121.2 | C14—C15—H15A | 109.5 |
C4—C5—I1 | 120.4 (3) | C14—C15—H15B | 109.5 |
C4—C5—C6 | 121.8 (4) | C14—C15—H15C | 109.5 |
C6—C5—I1 | 117.8 (3) | H15A—C15—H15B | 109.5 |
C5—C6—H6 | 119.9 | H15A—C15—H15C | 109.5 |
C7—C6—C5 | 120.3 (4) | H15B—C15—H15C | 109.5 |
C7—C6—H6 | 119.9 | C14—C16—H16A | 109.5 |
C2—C7—C6 | 118.5 (4) | C14—C16—H16B | 109.5 |
C2—C7—H7 | 120.8 | C14—C16—H16C | 109.5 |
C6—C7—H7 | 120.8 | H16A—C16—H16B | 109.5 |
C9—C8—N1 | 108.2 (4) | H16A—C16—H16C | 109.5 |
C13—C8—N1 | 129.7 (4) | H16B—C16—H16C | 109.5 |
C13—C8—C9 | 122.1 (4) | C14—C17—H17A | 109.5 |
C8—C9—C3 | 107.9 (4) | C14—C17—H17B | 109.5 |
C8—C9—C10 | 120.4 (4) | C14—C17—H17C | 109.5 |
C10—C9—C3 | 131.8 (4) | H17A—C17—H17B | 109.5 |
C9—C10—H10 | 121.7 | H17A—C17—H17C | 109.5 |
C11—C10—C9 | 116.6 (4) | H17B—C17—H17C | 109.5 |
C11—C10—H10 | 121.7 | ||
I1—C5—C6—C7 | −178.5 (3) | C3—C4—C5—C6 | −0.7 (7) |
I2—C11—C12—C13 | 179.6 (4) | C3—C9—C10—C11 | 179.1 (5) |
N1—C2—C3—C4 | 179.7 (4) | C4—C3—C9—C8 | −179.1 (5) |
N1—C2—C3—C9 | 0.0 (5) | C4—C3—C9—C10 | 1.1 (9) |
N1—C2—C7—C6 | −179.2 (4) | C4—C5—C6—C7 | 1.2 (7) |
N1—C8—C9—C3 | −0.8 (5) | C5—C6—C7—C2 | −1.1 (7) |
N1—C8—C9—C10 | 179.1 (4) | C7—C2—C3—C4 | −0.1 (7) |
N1—C8—C13—C12 | −178.0 (4) | C7—C2—C3—C9 | −179.8 (4) |
C1—O2—C14—C15 | −177.9 (4) | C8—N1—C1—O1 | −7.3 (7) |
C1—O2—C14—C16 | −59.5 (6) | C8—N1—C1—O2 | 173.0 (4) |
C1—O2—C14—C17 | 64.7 (6) | C8—N1—C2—C3 | −0.5 (5) |
C1—N1—C2—C3 | 179.7 (4) | C8—N1—C2—C7 | 179.2 (5) |
C1—N1—C2—C7 | −0.6 (8) | C8—C9—C10—C11 | −0.7 (7) |
C1—N1—C8—C9 | −179.3 (4) | C9—C3—C4—C5 | 179.7 (5) |
C1—N1—C8—C13 | −1.6 (7) | C9—C8—C13—C12 | −0.5 (7) |
C2—N1—C1—O1 | 172.5 (5) | C9—C10—C11—I2 | −179.0 (3) |
C2—N1—C1—O2 | −7.2 (7) | C9—C10—C11—C12 | −0.3 (7) |
C2—N1—C8—C9 | 0.8 (5) | C10—C11—C12—C13 | 0.9 (8) |
C2—N1—C8—C13 | 178.6 (5) | C11—C12—C13—C8 | −0.5 (7) |
C2—C3—C4—C5 | 0.2 (7) | C13—C8—C9—C3 | −178.8 (4) |
C2—C3—C9—C8 | 0.5 (5) | C13—C8—C9—C10 | 1.1 (7) |
C2—C3—C9—C10 | −179.4 (5) | C14—O2—C1—O1 | 0.5 (8) |
C3—C2—C7—C6 | 0.6 (7) | C14—O2—C1—N1 | −179.8 (4) |
C3—C4—C5—I1 | 178.9 (3) |
Acknowledgements
We thank the GVSU Chemistry Department Weldon Fund for financial support, as well as the GVSU Library Open Access Fund. We are grateful to Dr Susan Mendoza (GVSU CUSE) for her unwavering support as well as Dr Bruce (GVSU) for inspiring conversations. Many thanks to Dr de Bettencourt-Dias for giving us the opportunity to contribute to her work in the area of lanthanide luminescence.
Funding information
Funding for this research was provided by: National Science Foundation, Directorate for Mathematical and Physical Sciences (grant No. RUI CHE-2102576 to SB at GVSU; grant No. MRI CHE-1725699 to SB at GVSU; grant No. MRI CHE-1919565 to RJS at MSU); Grand Valley State University (grant No. McNair Fellowship to ENS; grant No. Kindshi Fellowship to ENS).
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