- 1. Chemical context
- 2. Structural commentary
- 3. Supramolecular features
- 4. An overview of diastereotopic groups in analogous structures
- 5. Hirshfeld surface analyses and fingerprint plots of structures I and II
- 6. Spectroscopy of I and II
- 7. Conclusions
- 8. Synthesis and crystallization
- 9. Refinement
- Supporting information
- References
- 1. Chemical context
- 2. Structural commentary
- 3. Supramolecular features
- 4. An overview of diastereotopic groups in analogous structures
- 5. Hirshfeld surface analyses and fingerprint plots of structures I and II
- 6. Spectroscopy of I and II
- 7. Conclusions
- 8. Synthesis and crystallization
- 9. Refinement
- Supporting information
- References
research communications
R2)P(O)[NH-(+)CH(C2H5)(C6H5)] (R = OC6H5 and C6H5)
groups in two new single-enantiomer structures (aDepartment of Chemistry, Science and Research Branch, Islamic Azad University, Tehran, Iran, bDepartment of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran, cDepartment of Chemistry, Zanjan Branch, Islamic Azad University, Zanjan, Iran, and dInstitute of Physics of the Czech Academy of Sciences, Na Slovance 2, 182 21, Prague 8, Czech Republic
*Correspondence e-mail: pourayoubi@um.ac.ir
The crystal structures of two single-enantiomer compounds, i.e. diphenyl [(R)-(+)-α-ethylbenzylamido]phosphate, C21H22NO3P or (C6H5O)2P(O)[NH-(R)-(+)CH(C2H5)(C6H5)] (I), and N-[(R)-(+)-α-ethylbenzyl]-P,P-diphenylphosphinic amide, C21H22NOP or (C6H5)2P(O)[NH-R-(+)CH(C2H5)(C6H5)] (II), were studied. The different environments at the phosphorus atoms, (O)2P(O)(N) and (C)2P(O)(N), allow the P=O/P—N bond strengths to be compared, as well as the N—H⋯O=P hydrogen-bond strengths, and P=O/N—H vibrations. The following characteristics related to C6H5O/C6H5 groups in I/II were considered: geometry parameters, contributions to the crystal packing, solution 13C/1H NMR chemical shifts, conformations, and NMR coupling constants. The phosphorus-carbon coupling constants nJPC (n = 2 and 3) in I and mJPC (m = 1, 2, 3 and 4) in II were evaluated. For a comparative study, chiral analogous structures were retrieved from the Cambridge Structural Database (CSD) and their geometries and conformations are discussed.
1. Chemical context
Phosphoramide/phosphinamide moieties are well-known structural motifs of some bioactive products and drugs (Warren et al., 2016; Palacios et al., 2005). There are also reports on their applications in flame retardants (Nguyen & Kim, 2008), ligands (Wang et al., 2021; Ferentinos et al., 2019; Zhang et al., 2019), extractants (Akbari et al., 2019), anion transporters (Cranwell et al., 2013) and catalysts (Klare et al., 2014).
Some of these characteristics are general for phosphoramide/phosphinamide compounds, and can be influenced by the groups attached to the common NP=O unit. Typically, the donor property of the phosphoryl group is beneficial in sorption processes, interactions with some enzymes and the formation of hydrogen bonds (Corbridge, 2000). The subfamily to which the compounds belong also plays a role. For example, phosphinicamides with the (C)2P(O)(N) skeleton are found to have higher electron-donor properties with respect to amidophosphodiesters with the (O)2P(O)(N) skeleton. The may also be essential for some particular applications, such as the manufacture of drugs and the planning of some reactions related to different reactivities of groups (Nakayama & Thompson, 1990), enantioseparation (Ahmadabad et al., 2019) and enantioselective catalysis (Liao et al., 2019).
Recently, we have reported some single-enantiomer small molecules, belonging to the phosphoramide family, and phosphoramide-based macromolecules/hydrogels (Ahmadabad et al., 2019; Taherzadeh et al., 2021; Sabbaghi et al., 2019). The related synthesis procedure could also be developed for manufacturing phosphinamide-based materials. Moreover, we are interested in studying the differences between two groups in chiral structures. The reason for such attention is the at phosphorus by the chiral group, which causes different reactivities of two groups (Nakayama & Thompson, 1990). These differences were investigated in organic syntheses for the creation of new stereocentres and also can be used for the design and synthesis of ligands with different donor properties of the groups.
In the present work, we continue with the synthesis of new chiral (C6H5O)2P(O)[NH-(+)CH(C2H5)(C6H5)] phosphoramide, (I), and (C6H5)2P(O)[NH-(+)CH(C2H5)(C6H5)] phosphinamide, (II) to study structural differences of two C6H5O/C6H5 groups, caused by the same chiral amine. Structure I is the enantiomer of the previously reported (C6H5O)2P(O)[NH-(–)CH(C2H5)(C6H5)] (Sabbaghi et al., 2011). The investigation is completed by considering structural differences/similarities of groups in analogous chiral structures retrieved from the CSD (Groom et al., 2016). The main features of the NMR parameters of the groups in I and II are also discussed.
2. Structural commentary
Compound I crystallizes in the orthorhombic P212121, with the composed of one amidophosphodiester molecule (Fig. 1). Compound II is triclinic in P1, and its consists of two phosphinicamide molecules (Fig. 2). Selected bond lengths and angles are presented in Tables 1 and 2. All bond distances and angles are within the values observed in analogous structures (Vahdani Alviri et al., 2020; Hamzehee et al., 2017).
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The P atoms display a distorted tetrahedral environment, (O)2P(O)(N) for I and (C)2P(O)(N) for II, and the maximum/minimum bond angles at phosphorus are related to O=P—O/O—P—O and O=P—N/N—P—C. The differences between maximum and minimum values are about 16.8° for I and 17.5°/16.9° for the two symmetry-independent molecules of II. The P—N—C angles in I and II, for example, P1—N3—C4 angle in II of 120.91 (14)° (Table 2), demonstrate that the state of nitrogen atoms is close to sp2. The P—O—C angles of I, 127.68 (17)°/121.91 (16)°, similarly show the state of the ester oxygen atoms is close to sp2.
The structure I is similar to its S-enantiomer (EXIQIM; Sabbaghi et al., 2011) regarding and other structural parameters; the only substantial difference is related to the configuration at dissymmetric carbon atoms. Fig. 3a shows the overlay of the inverted structure of I with EXIQIM. The overlay is calculated with a root-mean-square deviation (r.m.s.d.) of 0.0089 Å and a maximum deviation of 0.0153 Å.
The P=O bond in I, 1.469 (2) Å, is shorter than the P=O bonds in II, 1.4846 (15)/1.4933 (15) Å, and the same is true about the P—N bonds [1.619 (2) Å in I, and 1.6367 (19)/1.6426 (19) Å in II]. The differences result from the effect of electronegative oxygen atoms of two C6H5O groups in I attached to phosphorus, while in II, there are two C6H5 groups. The longer P—N bond in II is also caused by the steric effects of two phenyl groups directly attached to phosphorus. Minor differences are observed for the bond lengths related to the pairs. Typically, the P—O and P—C bonds in I and two independent molecules of II are 1.581 (2)/1.592 (2) Å, 1.802 (2)/1.808 (2) Å and 1.808 (2)/1.797 (2) Å.
In compound I, the N—H unit adopts an antiperiplanar (–ap) orientation with respect to the P=O group (based on the O=P—N—H torsion angle of −157.18°), and in two symmetry-independent molecules of II, the same units adopt synclinal (–sc and +sc) conformations (the torsion angles are −80.63° and +84.78°). The different conformation of II (in comparison to I) results from intramolecular rotations of the chiral amine, and the two independent molecules feature different rotations, but with a similar O=P—N—H conformation.
In II, the symmetry-independent molecules are similar concerning the bond lengths and angles (see Table 2). However, they show some differences in torsion angles (and conformations). Typically, the conformations in the CH3—CH2—CH—NH—P=O segment are defined by the C—C—C—N/C—C—N—P/C—N—P=O torsion angles, and the values in the P1 molecule of +173.7 (2)°/−98.2 (2)°/60.7 (2)° correspond to +ap/−ac/+sc conformations (ac = anticlinal). Similar torsion angles in the other molecule, −178.3 (2)°/−158.6 (2)°/−62.0 (2)°, define −ap/–ap/−sc conformations. The other notable difference between the two molecules is reflected in the direction of the phenyl ring of the chiral segment with respect to the P=O group (an opposite direction in the molecule P1 and the same direction in the second molecule). Fig. 3b shows the overlay of two molecules, and the root-mean-square deviation (r.m.s.d.) of the fit of them is 1.3533 Å with a maximum deviation of 4.6684 Å. The noted difference is reflected in the spatial distances of phenyl groups bonded to P and the phenyl group of chiral amine in the two molecules. The differences in phenyl rings in each molecule can also be described by their distances from the phenyl ring of the chiral amine.
For I, the distances between the centroid of the phenyl ring of chiral amine and the centroids of two phenyl groups are 5.0848 (1) and 7.9514 (1) Å. For the two symmetry-independent molecules of II, equivalent distances are 5.5767 (5)/7.0325 (6) Å and 7.1614 (6)/6.4951 (3) Å. These spatial distances show that one of the phenyl rings is significantly closer to the phenyl of the chiral amine. The differences in these spatial distances are pronounced in I, where the flexibility is greater (because of the existence of the P—O—C segment and the possibility of rotation).
In I, the conformations of phenyl rings can be introduced by the C—C—O—P torsion angles, which are 32.1 (3)°/−149.9 (2)° and 86.7 (3)°/−98.0 (3)° according to the +sc−ac conformations for both phenyl rings. In the structure of II, the C—C—P=O torsion angles were considered for checking the conformations of the phenyl rings. The values are 173.8 (2)°/−10.4 (2)° and 25.4 (2)°/−158.0 (2)° (+ap−sp and +sp−ap) in one molecule and 10.8 (2)°/−169.6 (2)° and −18.4 (2)°/163.0 (2)° (+sp−ap and −sp+ap) in the other molecule, which also show similar conformations.
3. Supramolecular features
In the crystal structures of I and II, the molecules are assembled in a chain arrangement through N—H⋯O(P) hydrogen bonds along [100] (Fig. 4, Tables 3 and 4). The N—H⋯O(P) hydrogen bond in I is weaker than in II (H⋯O distances are 2.24 and 1.97/2.08 Å, respectively). This weakness is the result of the lower hydrogen-bond acceptor capability expected for the phosphoryl group of an (O)2(N)P(O)-based structure, compared to the phosphoryl group of a (C)2(N)P(O)-based structure, and is due to the two atoms with a higher bonded to the phosphorus atom. The effect of different electronegativities was previously noted (see above) for different P=O bond lengths.
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C—H⋯π interactions in I assemble the molecules in a two-dimensional array in the ab plane. Fig. 5 shows the molecular assembly formed by the N—H⋯O, C—H⋯O and possible C—H⋯π interactions, where the C—H⋯O interaction does not change the dimensionality made by the N—H⋯O hydrogen bond. To show better the contact(s) contributing by each phenyl ring, the rings are distinguished by colours: green (C3–C8) and magenta (C11–C16) for the rings and grey (C19–C24) for the phenyl ring of the chiral amine. The green ring takes part in a C—H⋯π interaction as a donor (the acceptor is the grey ring) (H⋯Cg = 2.81 Å). The magenta ring takes part in a C—H⋯π interaction with an adjacent symmetry-related magenta ring (H⋯Cg = 3.23 Å) and also in a C—H⋯OP interaction (H⋯O = 2.55 Å). The formed two-dimensional assembly is double-layered and has a thickness of 18.057 Å in the c-axis direction.
In the structure of II, two possible C—H⋯π interactions exist (H⋯Cg distances of 3.41 and 3.49 Å), which do not change the dimensionality made by the N—H⋯O hydrogen bonds. In both C—H⋯π interactions, the H donors are chiral of two symmetry-independent molecules (the ortho-hydrogen atom and the hydrogen of the CH2 unit, as shown in Fig. 6). The acceptors are one of the phenyl rings of the molecule including atom P1 and the phenyl ring of the chiral amine in the other molecule.
4. An overview of groups in analogous structures
The chiral structures with an R2P(=X)—N—C(H)(C)(C—C) fragment (X = O, S, N; C is a dissymmetric carbon atom) were retrieved from the CSD to study possible structural differences for R groups; the metal complexes were not considered. The CSD (version 5.42 updated on Feb. 2021; Groom et al., 2016) comprises 48 such structures, of which two were unavailable. The remaining 46 structures include 79 pairs of P—Y (Y = C, O, N) bonds, and the structures have different skeletons, (C)2P(O)(N), (C)2P(S)(N), (C)2P(N)(N), (O)2P(O)(N) and (N)2P(O)(N). The related bond lengths are given in Table S1 of the supporting information. The largest difference for the P—C bond lengths made by groups (0.025 Å) exceeds the largest differences for the P—O (0.017 Å) and P—N bond lengths (0.015 Å). The P—C, P—N and P—O bond lengths in these structures vary from 1.773 to 1.837 Å, 1.629 to 1.652 Å and 1.555 to 1.607 Å, respectively, with averages of 1.805, 1.643 and 1.580 Å.
The conformations of I and II, i.e. with the O2P and C2P skeletons. Only three O2P-based structures (with the oxygen atom attached to an arene ring) were found in the CSD. For the C2P skeleton, 36 structures, including 64 R2PX fragments, were checked, and the C—C—P=X (X = O, N, S) torsion angles were evaluated.
groups attached to phosphorus were analysed in the structures analogous toThe C2P-based structures mainly include Ph2P(O) fragment (28 structures), similar to compound II; however, structures with Ph2P(S) (seven structures), and (C6H11)2P(=N) (one structure) fragments were also found. Both similar and different conformations were observed for groups. Details of the analysis are given in Table S2 and Fig. S1 of the supporting information. The torsion angles such as C—C—P=O of 0.04° in the structure with refcode MEFCIK (Sweeney et al., 2006) show the P=O group nearly in a plane where the phenyl ring also exists. Its complementary torsion angle for the other C—C—P=O related to this phenyl ring is 176.54°, and these two torsion angles define the sp+ap conformation of this phenyl ring with respect to the P=O group. On the other hand, most of the structures also include ±sp±ap conformations at least for one phenyl ring. The most populated conformations for fragments (separated by "/") are ±sp±ap/±sp±ap (26 entries) and ±sp±ap/±sc±ac (23 entries). In the systems with phenyl rings directly attached to the phosphorus atom, as a result of crowding, the simultaneous torsion angles around ±90° (a perpendicular conformation) for both phenyl rings were not found for any structure. In some cases, like in the structure with refcode VUGSOG (Yin et al., 2009) with close phenyl rings, the CH unit of one phenyl ring is directed toward the centroid of the second phenyl ring because of the formation of an intramolecular C—H⋯π interaction.
As a result of the existence of C—O—P moiety in the O2P-based structures, the flexibility is expected to be higher than for Ph2P-based structures; the three structures show different conformations but they include ±sc±ac conformations at least in one arene ring.
5. Hirshfeld surface analyses and fingerprint plots of structures I and II
To visualize and compare the intermolecular contacts of I and II, the Hirshfeld surfaces (HS) mapped with dnorm and two-dimensional fingerprint plots (Spackman & Jayatilaka, 2009; Spackman et al., 2021) were generated using the CrystalExplorer program (Wolff et al., 2013). In the HS map of I (Fig. 7), the red areas are associated with the N—H⋯O, C—H⋯O and 2×C—H⋯π interactions [labels (i), (ii) and (iii)]. The contacts of I, obtained from the fingerprint plots, are H⋯H (57.3%), H⋯C (28.8%), H⋯O (12.7%) and O⋯C (1.2%). The O⋯C contact results from the near distance of two symmetry-related phenoxy groups [O2(C3–C8)], through the ester oxygen atom and π-system.
For II, the HS map was generated around two symmetry-independent molecules step by step. Besides N—H⋯O hydrogen bonds, a significant H⋯H contact develops a red area, as seen in Fig. 8. This interaction is between H231 of the phenyl ring of molecule P1 connected to H301 of the chiral amine of the other molecule. The H⋯H separation was obtained as 2.291 Å and 2.026 Å in the X-ray and Hirshfeld analyses, respectively (the neutron-normalized CH distance is 1.083 Å in Hirshfeld in comparison with 0.941/0.943 Å in X-ray).
The contribution percentages of various contacts were obtained for the two symmetry-independent molecules. Compared with I, the structure of II shows fewer H⋯O, H⋯C and O⋯C contacts (7.1%/7.0%, 26.1%/25.6%, 0.1% for both), which were compensated with remarkable H⋯H (64.2%/64.8%), and C⋯C contacts (2.5% for both). The smaller volume/Z ratio in II is reflected by the crowding, manifested in increased H⋯H contacts and the observation of C⋯C contacts.
6. Spectroscopy of I and II
In the IR spectra, the N—H stretching bands are centred at 3268 cm−1 for I and 3152 cm−1 for II. The lower NH stretching wave number of II is attributed to stronger N—H⋯OP hydrogen bonds as discussed in the X-ray crystallography section. The bands at 1244 cm−1 for I and 1192 cm−1 for II are assigned to the P=O vibrations, and the higher wave number for I is in accordance with the presence of more electronegative atoms in the (O)2P(O)N skeleton [versus (C)2P(O)N for II].
In the 13C NMR spectra, the doublet signals at 31.80 p.p.m. (3J = 8.1 Hz) for I and at 32.62 p.p.m. (3J = 4.7 Hz) for II correspond to the CH2 group. The dissymmetric carbon atom does not show coupling with phosphorus, and the ipso-C atom attached to it, i.e. with a three-bond separation from phosphorus, shows a doublet at 143.04 p.p.m. (3J = 3.0 Hz) in I and at 145.50 p.p.m. (3J = 4.6 Hz) in II.
For the two 6H5O groups in I, two sets of carbon signals are observed. For example, the doublets at 150.74/150.92 p.p.m. and 120.12/120.23 p.p.m., with 2J = 7.0 Hz for the first pair and 3J = 4.0 Hz for the second pair, are associated with the ipso-C atoms and ortho-C atoms, respectively. All carbon atoms of phenyl groups in compound II show couplings with phosphorus (1J, 2J, 3J and 4J).
CThe doublet signals at 131.74/131.86 p.p.m. (J = 1.9/2.1 Hz) are assigned to the para-carbon atoms of the phenyl rings with four bonds separation from the phosphorus atom. The doublets at 132.20/132.38 p.p.m. (J = 9.4/9.5 Hz) and at 128.62/128.82 p.p.m. (J = 12.2/12.1 Hz) are assigned to the ortho- and meta-carbon atoms. The doublets centred at 134.44 and 134.77 p.p.m. (J = 127.4 and 126.4 Hz) are related to the ipso-carbon atoms. The separation of these signals is comparable with previously investigated 1J coupling constants for analogous compounds, typically in (C6H5)2P(O)(NH-cyclo-C7H13) with 1J = 129.4 Hz (Hamzehee et al., 2017).
A brief discussion of 31P NMR and 1H NMR spectroscopy is given in the supporting information (Figures S2 to S11).
7. Conclusions
The differences/similarities of 6H5O/2×C6H5, were discussed for two new single-enantiomer structures, (C6H5O)2P(O)[NH-(+)CH(C2H5)(C6H5)] (I), and (C6H5)2P(O)[NH-(+)CH(C2H5)(C6H5)] (II). The pronounced differences are related to the contributions in the crystal packing by groups, especially in the C—H⋯π interactions, and the NMR chemical shifts of corresponding 13C signals. The geometry parameters, conformations and NMR coupling constants of groups show minor differences (and/or similarities in some cases). In I with the O2P(O)N skeleton, the shorter P=O/P—N bonds and weaker N—H⋯O=P hydrogen bond are observed with respect to the structure II with the C2P(O)N skeleton. These structural features, resulting from different electronegativities of atoms, are reflected in the higher stretching frequencies of P=O and N—H bonds in the structure I (the latter because of a weaker N—H⋯O=P hydrogen bond). The lower volume/Z ratio of II is reflected by the crowding and observation of C⋯C contacts and raising H⋯H contacts, while I includes more H⋯O and O⋯C contacts. The study of analogous chiral structures retrieved from the CSD shows minor differences in bond lengths for P—C, P—O, and P—N bonds and more significant differences in torsion angles of groups.
pairs, 2×C8. Synthesis and crystallization
Preparation of (C6H5O)2P(O)[NH-(R)-(+)CH(C2H5)(C6H5)], (I). To a solution of (C6H5O)2P(O)Cl in dry chloroform, a solution of R-(+)-1-phenylpropylamine and triethylamine (1:1:1 molar ratio) in the same solvent was added at 273 K. After stirring for 4 h, the solvent was removed in a vacuum, and the obtained solid was washed with distilled water to remove (C2H5)3NHCl. Colourless crystals were obtained from a solution of the title compound in CHCl3/CH3CN (1:2 v/v) after slow evaporation at room temperature.
Analytical data: IR (KBr, ν, cm−1): 3268, 3063, 3029, 2970, 2929, 2854, 1592, 1492, 1453, 1420, 1244, 1200, 1167, 1058, 1020, 949, 900, 750, 689, 634, 579, 552, 520, 496, 457. 1H NMR (400.22 MHz, CDCl3): δ = 0.84 (t, J = 7.2 Hz, 3H), 1.81 (m, 2H), 3.84 (t, J = 10.8 Hz, 1H, NH), 4.32 (m, 1H), 6.99 (d, J = 8.4 Hz, 2H), 7.10 (t, J = 7.2 Hz, 1H), 7.16 – 7.35 (m, 12H); 13C{1H} NMR (100.64 MHz, CDCl3): δ = 10.59, 31.80 (d, J = 8.1 Hz), 58.20, 120.12 (d, J = 4.0 Hz), 120.23 (d, J = 4.0 Hz), 124.63, 124.83, 126.50, 127.21, 128.44, 129.43, 129.64, 143.04 (d, J = 3.0 Hz), 150.74 (d, J = 7.0 Hz), 150.92 (d, J = 7.0 Hz); 31P{1H} NMR (162.01 MHz, CDCl3): δ = −2.16.
Preparation of (C6H5)2P(O)[NH-(R)-(+)CH(C2H5)(C6H5)], (II). To a solution of (C6H5)2P(O)Cl in dry chloroform, a solution of R-(+)-1-phenylpropylamine and triethylamine (1:1:1 mole ratio) in the same solvent was added at 273 K. After stirring for 4 h, the solvent was removed in a vacuum, and the obtained solid was washed with distilled water to remove (C2H5)3NHCl. Colourless crystals were obtained from a solution of the title compound in CHCl3/CH3CN (1:2 v/v) after slow evaporation at room temperature.
Analytical data: IR (KBr, ν, cm−1): 3152, 3057, 3027, 2962, 2928, 2868, 1488, 1440, 1383, 1337, 1305, 1192, 1117, 1056, 1017, 929, 904, 838, 751, 721, 695, 603, 564, 533. 1H NMR (400.22 MHz, DMSO-d6): δ = 0.79 (t, J = 7.6 Hz, 3H), 1.69 (m, 1H), 1.82 (m, 1H), 3.84 (m, 1H), 5.91 (t, J = 10.2 Hz, 1H, NH), 7.26 (m, 5H), 7.37 (m, 2H), 7.50 (m, 4H), 7.64 (m, 2H), 7.79 (m, 2H); 13C{1H} NMR (100.64 MHz, DMSO-d6): δ = 11.60, 32.62 (d, J = 4.7 Hz), 57.10, 126.87, 126.97, 128.45, 128.62 (d, J = 12.2 Hz), 128.82 (d, J = 12.1 Hz), 131.74 (d, J = 1.9 Hz), 131.86 (d, J = 2.1 Hz), 132.20 (d, J = 9.4 Hz), 132.38 (d, J = 9.5 Hz), 134.44 (d, J = 127.4 Hz), 134.77 (d, J = 126.4 Hz), 145.50 (d, J = 4.6 Hz); 31P{1H} NMR (162.01 MHz, DMSO-d6): δ = 21.13.
9. Refinement
Crystal data, data collection and structure . The H atoms were all located in difference-Fourier maps, but those attached to C atoms were repositioned geometrically. The H atoms were initially refined with soft restraints on the bond lengths and angles to regularize their geometries (C—H in the range 0.93–0.98 Å, N—H in the range 0.86–0.89 Å) and Uiso(H) values in the range 1.2–1.5×Ueq of the parent atom, after which the positions were refined with riding constraints (Cooper et al., 2010; Watkin & Cooper, 2016). The was determined from the of the (Parsons et al., 2013).
details are summarized in Table 5Supporting information
https://doi.org/10.1107/S2056989023006278/jq2028sup1.cif
contains datablocks global, I, II. DOI:Figures (related to the CSD analysis and NMR) and tables (CSD) and a brief discussion about NMR. DOI: https://doi.org/10.1107/S2056989023006278/jq2028sup3.docx
For both structures, data collection: CrysAlis PRO (Rigaku OD, 2017); cell
CrysAlis PRO (Rigaku OD, 2017); data reduction: CrysAlis PRO (Rigaku OD, 2017); program(s) used to solve structure: Superflip (Palatinus & Chapuis, 2007); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003), JANA2006 (Petricek et al., 2014); molecular graphics: Mercury (Macrae et al., 2020); software used to prepare material for publication: CRYSTALS (Betteridge et al., 2003), MCE (Rohlicek & Husak, 2007).C21H22NO3P | Dx = 1.325 Mg m−3 |
Mr = 367.38 | Cu Kα radiation, λ = 1.54180 Å |
Orthorhombic, P212121 | Cell parameters from 19519 reflections |
a = 5.4947 (1) Å | θ = 4–68° |
b = 8.1503 (1) Å | µ = 1.49 mm−1 |
c = 41.1096 (7) Å | T = 120 K |
V = 1841.03 (5) Å3 | Blade, clear colourless |
Z = 4 | 0.90 × 0.27 × 0.07 mm |
F(000) = 776 |
Oxford Diffraction Gemini diffractometer | 3262 reflections with I > 2.0σ(I) |
Graphite monochromator | Rint = 0.067 |
ω scans | θmax = 74.9°, θmin = 4.3° |
Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2017) | h = −6→6 |
Tmin = 0.34, Tmax = 0.90 | k = −9→9 |
34246 measured reflections | l = −49→48 |
3356 independent reflections |
Refinement on F2 | Hydrogen site location: difference Fourier map |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F > 3σ(F)] = 0.037 | Method = Modified Sheldrick w = 1/[σ2(F2) + ( 0.03P)2 + 3.0P] , where P = (max(Fo2,0) + 2Fc2)/3 |
wR(F) = 0.102 | (Δ/σ)max = 0.001 |
S = 1.02 | Δρmax = 0.33 e Å−3 |
3355 reflections | Δρmin = −0.38 e Å−3 |
240 parameters | Absolute structure: Parsons wt al. (2013), 1324 Friedel pairs |
4 restraints | Absolute structure parameter: 0.013 (9) |
Primary atom site location: other |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems open-flow nitrogen cryostat (Cosier & Glazer, 1986) with a nominal stability of 0.1K. Cosier, J. & Glazer, A.M., 1986. J. Appl. Cryst. 105-107. |
Refinement. X-ray analyses of I and II were performed on two different diffractometers, both using mirror-collimated Cu-Kα radiation (λ = 1.5418 Å), and CCD detector Atlas S2. The 120 K data set was acquired on a Gemini diffractometer with a classical sealed X-ray tube, while the 95 K data set was obtained on a SuperNova diffractometer with a micro-focus sealed tube. The data reduction and absorption correction were made with CrysAlis PRO software (Rigaku, 2017). The structures were solved by charge flipping methods using SUPERFLIP (Palatinus & Chapuis, 2007) software and refined by full-matrix least-squares on F squared value using Crystals (Betteridge et al., 2003) and JANA2006 (Petricek et al., 2014) software programs. MCE (Rohlicek & Husak, 2007) software was used to visualize residual electron density maps. |
x | y | z | Uiso*/Ueq | ||
P1 | 0.47169 (12) | 0.71916 (8) | 0.639453 (15) | 0.0179 | |
O2 | 0.4682 (3) | 0.7590 (2) | 0.60181 (4) | 0.0229 | |
C3 | 0.2732 (5) | 0.8149 (3) | 0.58334 (6) | 0.0194 | |
C4 | 0.0936 (5) | 0.9153 (3) | 0.59535 (7) | 0.0218 | |
C5 | −0.0889 (5) | 0.9701 (4) | 0.57438 (7) | 0.0264 | |
C6 | −0.0868 (6) | 0.9248 (4) | 0.54188 (7) | 0.0274 | |
C7 | 0.0950 (6) | 0.8226 (4) | 0.53038 (7) | 0.0287 | |
C8 | 0.2758 (5) | 0.7663 (4) | 0.55103 (6) | 0.0244 | |
O9 | 0.2348 (3) | 0.6673 (2) | 0.65240 (5) | 0.0226 | |
O10 | 0.5773 (4) | 0.8880 (2) | 0.65292 (4) | 0.0221 | |
C11 | 0.6063 (5) | 0.9175 (3) | 0.68651 (7) | 0.0204 | |
C12 | 0.8179 (5) | 0.8689 (3) | 0.70180 (7) | 0.0232 | |
C13 | 0.8488 (6) | 0.9095 (4) | 0.73416 (7) | 0.0293 | |
C14 | 0.6729 (6) | 0.9975 (4) | 0.75073 (7) | 0.0323 | |
C15 | 0.4628 (6) | 1.0441 (4) | 0.73500 (8) | 0.0335 | |
C16 | 0.4291 (6) | 1.0050 (4) | 0.70255 (7) | 0.0284 | |
N17 | 0.6906 (4) | 0.5889 (3) | 0.64476 (5) | 0.0183 | |
C18 | 0.6554 (5) | 0.4134 (3) | 0.63655 (7) | 0.0190 | |
C19 | 0.6338 (5) | 0.3836 (3) | 0.60013 (7) | 0.0191 | |
C20 | 0.8049 (6) | 0.4457 (3) | 0.57846 (7) | 0.0236 | |
C21 | 0.7840 (6) | 0.4160 (4) | 0.54532 (7) | 0.0267 | |
C22 | 0.5918 (6) | 0.3231 (3) | 0.53328 (7) | 0.0265 | |
C23 | 0.4216 (5) | 0.2595 (4) | 0.55459 (7) | 0.0264 | |
C24 | 0.4427 (5) | 0.2905 (3) | 0.58786 (6) | 0.0230 | |
C25 | 0.8638 (5) | 0.3149 (3) | 0.65162 (7) | 0.0246 | |
C26 | 0.8837 (6) | 0.3359 (4) | 0.68815 (7) | 0.0306 | |
H41 | 0.0953 | 0.9440 | 0.6176 | 0.0258* | |
H51 | −0.2169 | 1.0378 | 0.5825 | 0.0333* | |
H61 | −0.2126 | 0.9629 | 0.5284 | 0.0334* | |
H71 | 0.0971 | 0.7921 | 0.5081 | 0.0351* | |
H81 | 0.4006 | 0.6971 | 0.5432 | 0.0311* | |
H121 | 0.9407 | 0.8103 | 0.6910 | 0.0282* | |
H131 | 0.9901 | 0.8782 | 0.7449 | 0.0362* | |
H141 | 0.6962 | 1.0245 | 0.7732 | 0.0385* | |
H151 | 0.3406 | 1.1020 | 0.7466 | 0.0414* | |
H161 | 0.2869 | 1.0386 | 0.6919 | 0.0336* | |
H181 | 0.4995 | 0.3782 | 0.6465 | 0.0220* | |
H201 | 0.9339 | 0.5088 | 0.5863 | 0.0278* | |
H211 | 0.9021 | 0.4591 | 0.5309 | 0.0327* | |
H221 | 0.5809 | 0.3042 | 0.5105 | 0.0308* | |
H231 | 0.2889 | 0.1950 | 0.5464 | 0.0310* | |
H241 | 0.3217 | 0.2488 | 0.6018 | 0.0291* | |
H251 | 1.0183 | 0.3522 | 0.6420 | 0.0296* | |
H252 | 0.8302 | 0.1979 | 0.6470 | 0.0306* | |
H263 | 1.0151 | 0.2655 | 0.6967 | 0.0474* | |
H262 | 0.9199 | 0.4496 | 0.6934 | 0.0469* | |
H261 | 0.7302 | 0.3052 | 0.6981 | 0.0460* | |
H171 | 0.837 (3) | 0.625 (2) | 0.6445 (7) | 0.0219 (19)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
P1 | 0.0183 (3) | 0.0169 (3) | 0.0184 (3) | 0.0003 (3) | 0.0003 (3) | −0.0009 (3) |
O2 | 0.0178 (9) | 0.0304 (10) | 0.0207 (9) | 0.0051 (9) | 0.0004 (8) | 0.0012 (7) |
C3 | 0.0166 (13) | 0.0204 (14) | 0.0212 (13) | 0.0002 (11) | −0.0014 (10) | 0.0027 (10) |
C4 | 0.0241 (15) | 0.0203 (13) | 0.0209 (13) | −0.0005 (12) | 0.0004 (12) | −0.0009 (11) |
C5 | 0.0215 (15) | 0.0214 (14) | 0.0364 (16) | 0.0047 (12) | 0.0003 (13) | 0.0024 (12) |
C6 | 0.0241 (15) | 0.0249 (15) | 0.0331 (16) | −0.0028 (12) | −0.0096 (13) | 0.0053 (12) |
C7 | 0.0328 (17) | 0.0320 (16) | 0.0213 (14) | −0.0007 (13) | −0.0056 (12) | 0.0009 (12) |
C8 | 0.0246 (14) | 0.0262 (15) | 0.0224 (13) | 0.0035 (12) | 0.0018 (11) | 0.0007 (11) |
O9 | 0.0194 (10) | 0.0225 (10) | 0.0259 (9) | 0.0001 (8) | 0.0017 (8) | −0.0009 (8) |
O10 | 0.0248 (10) | 0.0183 (9) | 0.0233 (9) | −0.0007 (8) | −0.0009 (8) | −0.0003 (8) |
C11 | 0.0222 (14) | 0.0154 (12) | 0.0235 (13) | −0.0048 (11) | 0.0023 (11) | −0.0024 (11) |
C12 | 0.0244 (15) | 0.0221 (14) | 0.0232 (14) | −0.0012 (12) | 0.0029 (12) | −0.0018 (11) |
C13 | 0.0314 (16) | 0.0315 (16) | 0.0252 (15) | −0.0041 (14) | −0.0009 (13) | 0.0024 (13) |
C14 | 0.0430 (19) | 0.0289 (16) | 0.0251 (15) | −0.0109 (15) | 0.0066 (14) | −0.0058 (13) |
C15 | 0.0321 (17) | 0.0298 (16) | 0.0385 (17) | −0.0019 (14) | 0.0098 (15) | −0.0117 (13) |
C16 | 0.0239 (15) | 0.0232 (14) | 0.0380 (16) | 0.0030 (13) | 0.0011 (13) | −0.0046 (12) |
N17 | 0.0173 (11) | 0.0173 (11) | 0.0204 (12) | −0.0029 (9) | −0.0010 (10) | −0.0020 (9) |
C18 | 0.0209 (13) | 0.0146 (12) | 0.0215 (13) | −0.0010 (11) | 0.0033 (11) | −0.0024 (11) |
C19 | 0.0204 (13) | 0.0138 (13) | 0.0230 (13) | 0.0030 (11) | 0.0017 (11) | −0.0028 (10) |
C20 | 0.0235 (15) | 0.0211 (14) | 0.0261 (14) | −0.0029 (12) | 0.0015 (12) | −0.0018 (11) |
C21 | 0.0282 (16) | 0.0245 (15) | 0.0275 (15) | 0.0017 (13) | 0.0069 (13) | 0.0021 (12) |
C22 | 0.0339 (17) | 0.0265 (15) | 0.0191 (13) | 0.0081 (13) | −0.0017 (12) | −0.0018 (11) |
C23 | 0.0232 (15) | 0.0270 (15) | 0.0288 (14) | 0.0019 (12) | −0.0056 (12) | −0.0075 (12) |
C24 | 0.0211 (13) | 0.0225 (13) | 0.0254 (13) | 0.0020 (13) | 0.0020 (11) | −0.0004 (12) |
C25 | 0.0295 (15) | 0.0183 (14) | 0.0261 (14) | 0.0034 (12) | −0.0001 (12) | 0.0018 (11) |
C26 | 0.0413 (18) | 0.0226 (15) | 0.0279 (15) | 0.0024 (14) | −0.0047 (13) | 0.0016 (12) |
P1—O2 | 1.5814 (18) | C15—C16 | 1.384 (4) |
P1—O9 | 1.469 (2) | C15—H151 | 0.948 |
P1—O10 | 1.5924 (19) | C16—H161 | 0.937 |
P1—N17 | 1.619 (2) | N17—C18 | 1.482 (3) |
O2—C3 | 1.390 (3) | N17—H171 | 0.854 (17) |
C3—C4 | 1.373 (4) | C18—C19 | 1.522 (4) |
C3—C8 | 1.386 (4) | C18—C25 | 1.530 (4) |
C4—C5 | 1.396 (4) | C18—H181 | 0.991 |
C4—H41 | 0.945 | C19—C20 | 1.391 (4) |
C5—C6 | 1.386 (4) | C19—C24 | 1.390 (4) |
C5—H51 | 0.954 | C20—C21 | 1.388 (4) |
C6—C7 | 1.383 (4) | C20—H201 | 0.933 |
C6—H61 | 0.939 | C21—C22 | 1.390 (4) |
C7—C8 | 1.385 (4) | C21—H211 | 0.946 |
C7—H71 | 0.948 | C22—C23 | 1.383 (4) |
C8—H81 | 0.945 | C22—H221 | 0.953 |
O10—C11 | 1.411 (3) | C23—C24 | 1.396 (4) |
C11—C12 | 1.380 (4) | C23—H231 | 0.960 |
C11—C16 | 1.375 (4) | C24—H241 | 0.940 |
C12—C13 | 1.382 (4) | C25—C26 | 1.516 (4) |
C12—H121 | 0.938 | C25—H251 | 0.985 |
C13—C14 | 1.383 (5) | C25—H252 | 0.989 |
C13—H131 | 0.929 | C26—H263 | 0.987 |
C14—C15 | 1.377 (5) | C26—H262 | 0.972 |
C14—H141 | 0.959 | C26—H261 | 0.970 |
O2—P1—O9 | 113.77 (11) | C15—C16—H161 | 119.7 |
O2—P1—O10 | 99.62 (10) | C11—C16—H161 | 121.2 |
O9—P1—O10 | 116.45 (11) | P1—N17—C18 | 120.34 (18) |
O2—P1—N17 | 106.00 (11) | P1—N17—H171 | 118.2 (12) |
O9—P1—N17 | 114.90 (12) | C18—N17—H171 | 116.6 (12) |
O10—P1—N17 | 104.43 (11) | N17—C18—C19 | 112.8 (2) |
P1—O2—C3 | 127.68 (17) | N17—C18—C25 | 108.4 (2) |
O2—C3—C4 | 123.5 (2) | C19—C18—C25 | 111.9 (2) |
O2—C3—C8 | 114.9 (2) | N17—C18—H181 | 107.4 |
C4—C3—C8 | 121.5 (3) | C19—C18—H181 | 107.0 |
C3—C4—C5 | 119.0 (3) | C25—C18—H181 | 109.2 |
C3—C4—H41 | 119.3 | C18—C19—C20 | 121.3 (2) |
C5—C4—H41 | 121.7 | C18—C19—C24 | 120.2 (2) |
C4—C5—C6 | 120.3 (3) | C20—C19—C24 | 118.5 (3) |
C4—C5—H51 | 120.0 | C19—C20—C21 | 120.6 (3) |
C6—C5—H51 | 119.7 | C19—C20—H201 | 119.6 |
C5—C6—C7 | 119.7 (3) | C21—C20—H201 | 119.8 |
C5—C6—H61 | 118.4 | C20—C21—C22 | 120.5 (3) |
C7—C6—H61 | 121.9 | C20—C21—H211 | 119.5 |
C6—C7—C8 | 120.5 (3) | C22—C21—H211 | 120.1 |
C6—C7—H71 | 119.7 | C21—C22—C23 | 119.5 (3) |
C8—C7—H71 | 119.7 | C21—C22—H221 | 119.1 |
C3—C8—C7 | 119.0 (3) | C23—C22—H221 | 121.4 |
C3—C8—H81 | 120.3 | C22—C23—C24 | 119.8 (3) |
C7—C8—H81 | 120.7 | C22—C23—H231 | 119.7 |
P1—O10—C11 | 121.91 (16) | C24—C23—H231 | 120.5 |
O10—C11—C12 | 119.5 (2) | C23—C24—C19 | 121.1 (3) |
O10—C11—C16 | 118.5 (3) | C23—C24—H241 | 118.1 |
C12—C11—C16 | 121.8 (3) | C19—C24—H241 | 120.7 |
C11—C12—C13 | 118.2 (3) | C18—C25—C26 | 113.3 (2) |
C11—C12—H121 | 122.5 | C18—C25—H251 | 108.7 |
C13—C12—H121 | 119.3 | C26—C25—H251 | 107.6 |
C12—C13—C14 | 120.9 (3) | C18—C25—H252 | 106.8 |
C12—C13—H131 | 119.6 | C26—C25—H252 | 108.1 |
C14—C13—H131 | 119.5 | H251—C25—H252 | 112.4 |
C13—C14—C15 | 119.8 (3) | C25—C26—H263 | 110.0 |
C13—C14—H141 | 120.0 | C25—C26—H262 | 109.9 |
C15—C14—H141 | 120.1 | H263—C26—H262 | 109.0 |
C14—C15—C16 | 120.1 (3) | C25—C26—H261 | 109.0 |
C14—C15—H151 | 119.7 | H263—C26—H261 | 109.6 |
C16—C15—H151 | 120.2 | H262—C26—H261 | 109.3 |
C15—C16—C11 | 119.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H121···O9i | 0.94 | 2.55 | 3.474 (4) | 170 |
N17—H171···O9i | 0.85 | 2.24 | 3.074 (4) | 166 (2) |
Symmetry code: (i) x+1, y, z. |
C21H22NOP | Z = 2 |
Mr = 335.39 | F(000) = 356 |
Triclinic, P1 | Dx = 1.233 Mg m−3 |
a = 9.0483 (7) Å | Cu Kα radiation, λ = 1.54180 Å |
b = 10.5533 (8) Å | Cell parameters from 11237 reflections |
c = 11.0036 (6) Å | θ = 4–74° |
α = 70.065 (6)° | µ = 1.39 mm−1 |
β = 86.368 (5)° | T = 95 K |
γ = 66.571 (7)° | Needle, colorless |
V = 903.15 (13) Å3 | 0.62 × 0.09 × 0.07 mm |
Oxford Diffraction SuperNova diffractometer | 6648 reflections with I > 2.0σ(I) |
Focussing mirrors monochromator | Rint = 0.036 |
ω scans | θmax = 74.8°, θmin = 4.3° |
Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2017) | h = −10→11 |
Tmin = 0.49, Tmax = 0.91 | k = −13→13 |
15035 measured reflections | l = −13→13 |
6781 independent reflections |
Refinement on F2 | H atoms treated by a mixture of independent and constrained refinement |
Least-squares matrix: full | Method = Modified Sheldrick w = 1/[σ2(F2) + ( 0.05P)2 + 0.53P] , where P = (max(Fo2,0) + 2Fc2)/3 |
R[F > 3σ(F)] = 0.034 | (Δ/σ)max = 0.001 |
wR(F) = 0.092 | Δρmax = 0.49 e Å−3 |
S = 0.97 | Δρmin = −0.40 e Å−3 |
6779 reflections | Extinction correction: Larson (1970), Equation 22 |
443 parameters | Extinction coefficient: 12 (2) |
11 restraints | Absolute structure: Parsons et al. (2013), 3140 Friedel pairs |
Primary atom site location: other | Absolute structure parameter: −0.013 (7) |
Hydrogen site location: difference Fourier map |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems open-flow nitrogen cryostat (Cosier & Glazer, 1986) with a nominal stability of 0.1K. Cosier, J. & Glazer, A.M., 1986. J. Appl. Cryst. 105-107. |
x | y | z | Uiso*/Ueq | ||
P1 | 0.65963 (7) | 0.68073 (7) | 0.14489 (6) | 0.0147 | |
O2 | 0.68651 (18) | 0.78920 (16) | 0.18817 (15) | 0.0192 | |
N3 | 0.5062 (2) | 0.7351 (2) | 0.04120 (17) | 0.0183 | |
C4 | 0.4906 (3) | 0.8436 (2) | −0.0895 (2) | 0.0186 | |
C5 | 0.4419 (3) | 0.7964 (2) | −0.1908 (2) | 0.0200 | |
C6 | 0.3292 (3) | 0.7336 (2) | −0.1687 (2) | 0.0246 | |
C7 | 0.2863 (3) | 0.6919 (3) | −0.2628 (3) | 0.0311 | |
C8 | 0.3541 (3) | 0.7134 (3) | −0.3805 (3) | 0.0375 | |
C9 | 0.4638 (3) | 0.7781 (3) | −0.4047 (3) | 0.0358 | |
C10 | 0.5082 (3) | 0.8189 (3) | −0.3100 (2) | 0.0280 | |
C11 | 0.3751 (3) | 0.9980 (2) | −0.0941 (2) | 0.0224 | |
C12 | 0.3668 (3) | 1.1186 (3) | −0.2214 (2) | 0.0301 | |
C13 | 0.6291 (3) | 0.5395 (2) | 0.2788 (2) | 0.0171 | |
C14 | 0.5864 (3) | 0.4341 (2) | 0.2599 (2) | 0.0231 | |
C15 | 0.5756 (3) | 0.3206 (3) | 0.3661 (3) | 0.0283 | |
C16 | 0.6061 (3) | 0.3133 (3) | 0.4908 (2) | 0.0326 | |
C17 | 0.6464 (3) | 0.4184 (3) | 0.5101 (2) | 0.0339 | |
C18 | 0.6596 (3) | 0.5315 (3) | 0.4045 (2) | 0.0244 | |
C19 | 0.8355 (3) | 0.5873 (2) | 0.0723 (2) | 0.0163 | |
C20 | 0.9871 (3) | 0.5761 (2) | 0.1080 (2) | 0.0228 | |
C21 | 1.1249 (3) | 0.4987 (3) | 0.0594 (3) | 0.0291 | |
C22 | 1.1132 (3) | 0.4300 (3) | −0.0238 (3) | 0.0370 | |
C23 | 0.9630 (4) | 0.4415 (3) | −0.0610 (3) | 0.0366 | |
C24 | 0.8248 (3) | 0.5197 (3) | −0.0129 (2) | 0.0266 | |
P25 | 0.07166 (8) | 0.86743 (7) | 0.21332 (6) | 0.0153 | |
O26 | 0.19971 (18) | 0.79311 (17) | 0.13860 (15) | 0.0191 | |
N27 | −0.1158 (2) | 0.9595 (2) | 0.14867 (17) | 0.0186 | |
C28 | −0.1622 (3) | 1.0887 (2) | 0.0291 (2) | 0.0190 | |
C29 | −0.1193 (3) | 1.0513 (2) | −0.0942 (2) | 0.0181 | |
C30 | −0.0560 (3) | 1.1317 (3) | −0.1945 (2) | 0.0246 | |
C31 | −0.0237 (3) | 1.1016 (3) | −0.3093 (2) | 0.0284 | |
C32 | −0.0532 (3) | 0.9893 (3) | −0.3247 (2) | 0.0273 | |
C33 | −0.1146 (3) | 0.9065 (3) | −0.2249 (2) | 0.0255 | |
C34 | −0.1478 (3) | 0.9383 (2) | −0.1108 (2) | 0.0217 | |
C35 | −0.3445 (3) | 1.1792 (2) | 0.0259 (2) | 0.0236 | |
C36 | −0.4123 (3) | 1.3159 (3) | −0.0958 (3) | 0.0292 | |
C37 | 0.0538 (3) | 0.7326 (2) | 0.3613 (2) | 0.0170 | |
C38 | 0.1730 (3) | 0.5907 (2) | 0.3955 (2) | 0.0199 | |
C39 | 0.1665 (3) | 0.4812 (3) | 0.5077 (2) | 0.0262 | |
C40 | 0.0416 (3) | 0.5138 (3) | 0.5867 (2) | 0.0262 | |
C41 | −0.0766 (3) | 0.6557 (3) | 0.5537 (2) | 0.0258 | |
C42 | −0.0719 (3) | 0.7651 (2) | 0.4412 (2) | 0.0216 | |
C43 | 0.1205 (3) | 0.9967 (2) | 0.2565 (2) | 0.0189 | |
C44 | 0.2809 (3) | 0.9847 (2) | 0.2533 (2) | 0.0212 | |
C45 | 0.3232 (3) | 1.0805 (3) | 0.2895 (2) | 0.0264 | |
C46 | 0.2078 (3) | 1.1884 (3) | 0.3291 (2) | 0.0277 | |
C47 | 0.0476 (3) | 1.2019 (2) | 0.3324 (2) | 0.0243 | |
C48 | 0.0055 (3) | 1.1064 (2) | 0.2959 (2) | 0.0209 | |
H41 | 0.5974 | 0.8444 | −0.1091 | 0.0220* | |
H61 | 0.2795 | 0.7205 | −0.0895 | 0.0305* | |
H71 | 0.2113 | 0.6464 | −0.2449 | 0.0358* | |
H81 | 0.3236 | 0.6870 | −0.4464 | 0.0453* | |
H91 | 0.5092 | 0.7947 | −0.4848 | 0.0425* | |
H101 | 0.5834 | 0.8620 | −0.3268 | 0.0343* | |
H111 | 0.2680 | 0.9967 | −0.0769 | 0.0261* | |
H112 | 0.4090 | 1.0174 | −0.0231 | 0.0257* | |
H121 | 0.2982 | 1.2149 | −0.2168 | 0.0438* | |
H122 | 0.3213 | 1.1064 | −0.2928 | 0.0436* | |
H123 | 0.4734 | 1.1161 | −0.2430 | 0.0437* | |
H141 | 0.5650 | 0.4389 | 0.1758 | 0.0280* | |
H151 | 0.5505 | 0.2486 | 0.3538 | 0.0328* | |
H161 | 0.6024 | 0.2356 | 0.5624 | 0.0404* | |
H171 | 0.6628 | 0.4139 | 0.5962 | 0.0414* | |
H181 | 0.6884 | 0.6026 | 0.4173 | 0.0270* | |
H201 | 0.9926 | 0.6245 | 0.1670 | 0.0274* | |
H211 | 1.2268 | 0.4921 | 0.0852 | 0.0351* | |
H221 | 1.2068 | 0.3769 | −0.0554 | 0.0433* | |
H231 | 0.9537 | 0.3961 | −0.1187 | 0.0442* | |
H241 | 0.7251 | 0.5273 | −0.0381 | 0.0319* | |
H281 | −0.1033 | 1.1485 | 0.0335 | 0.0213* | |
H301 | −0.0382 | 1.2104 | −0.1855 | 0.0287* | |
H311 | 0.0176 | 1.1593 | −0.3771 | 0.0337* | |
H321 | −0.0304 | 0.9685 | −0.4040 | 0.0327* | |
H331 | −0.1283 | 0.8249 | −0.2332 | 0.0317* | |
H341 | −0.1856 | 0.8793 | −0.0420 | 0.0267* | |
H352 | −0.4011 | 1.1147 | 0.0318 | 0.0272* | |
H351 | −0.3627 | 1.2111 | 0.1016 | 0.0271* | |
H362 | −0.5227 | 1.3761 | −0.0867 | 0.0432* | |
H361 | −0.4124 | 1.2855 | −0.1701 | 0.0425* | |
H363 | −0.3466 | 1.3730 | −0.1133 | 0.0432* | |
H381 | 0.2588 | 0.5680 | 0.3428 | 0.0238* | |
H391 | 0.2475 | 0.3849 | 0.5279 | 0.0309* | |
H401 | 0.0361 | 0.4387 | 0.6628 | 0.0323* | |
H411 | −0.1604 | 0.6800 | 0.6071 | 0.0306* | |
H421 | −0.1508 | 0.8603 | 0.4175 | 0.0247* | |
H441 | 0.3606 | 0.9101 | 0.2267 | 0.0238* | |
H451 | 0.4286 | 1.0731 | 0.2856 | 0.0318* | |
H461 | 0.2360 | 1.2529 | 0.3533 | 0.0341* | |
H471 | −0.0304 | 1.2756 | 0.3581 | 0.0302* | |
H481 | −0.1012 | 1.1142 | 0.2988 | 0.0256* | |
H271 | −0.169 (2) | 0.907 (2) | 0.159 (2) | 0.0223 (19)* | |
H31 | 0.417 (2) | 0.746 (2) | 0.0763 (17) | 0.0229 (19)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
P1 | 0.0160 (2) | 0.0161 (2) | 0.0131 (2) | −0.0080 (2) | 0.00316 (19) | −0.00467 (19) |
O2 | 0.0189 (7) | 0.0201 (7) | 0.0238 (8) | −0.0108 (6) | 0.0052 (6) | −0.0110 (6) |
N3 | 0.0187 (9) | 0.0216 (9) | 0.0146 (8) | −0.0111 (7) | 0.0048 (7) | −0.0032 (7) |
C4 | 0.0205 (11) | 0.0233 (10) | 0.0133 (10) | −0.0131 (9) | 0.0033 (8) | −0.0029 (8) |
C5 | 0.0182 (10) | 0.0200 (10) | 0.0175 (10) | −0.0056 (8) | −0.0008 (8) | −0.0034 (8) |
C6 | 0.0256 (12) | 0.0231 (11) | 0.0242 (11) | −0.0097 (10) | −0.0016 (9) | −0.0064 (9) |
C7 | 0.0285 (13) | 0.0254 (12) | 0.0378 (14) | −0.0069 (10) | −0.0096 (11) | −0.0114 (11) |
C8 | 0.0388 (16) | 0.0336 (14) | 0.0335 (14) | −0.0003 (12) | −0.0143 (12) | −0.0176 (12) |
C9 | 0.0352 (15) | 0.0427 (15) | 0.0233 (12) | −0.0044 (12) | −0.0001 (11) | −0.0170 (11) |
C10 | 0.0258 (12) | 0.0350 (13) | 0.0194 (11) | −0.0093 (10) | 0.0028 (9) | −0.0083 (10) |
C11 | 0.0272 (12) | 0.0213 (11) | 0.0186 (11) | −0.0121 (9) | 0.0014 (9) | −0.0040 (9) |
C12 | 0.0397 (14) | 0.0233 (12) | 0.0225 (12) | −0.0141 (11) | −0.0003 (10) | 0.0001 (10) |
C13 | 0.0144 (10) | 0.0177 (10) | 0.0171 (10) | −0.0054 (8) | 0.0031 (8) | −0.0051 (8) |
C14 | 0.0205 (11) | 0.0238 (11) | 0.0248 (11) | −0.0097 (9) | 0.0071 (9) | −0.0079 (9) |
C15 | 0.0253 (12) | 0.0183 (11) | 0.0378 (14) | −0.0108 (9) | 0.0103 (10) | −0.0042 (10) |
C16 | 0.0266 (12) | 0.0243 (12) | 0.0279 (13) | −0.0050 (10) | 0.0102 (10) | 0.0060 (10) |
C17 | 0.0347 (14) | 0.0377 (14) | 0.0159 (11) | −0.0096 (11) | 0.0062 (10) | 0.0002 (10) |
C18 | 0.0272 (12) | 0.0258 (11) | 0.0187 (11) | −0.0090 (10) | 0.0015 (9) | −0.0081 (9) |
C19 | 0.0165 (10) | 0.0156 (9) | 0.0161 (10) | −0.0077 (8) | 0.0061 (8) | −0.0042 (8) |
C20 | 0.0228 (11) | 0.0210 (11) | 0.0228 (11) | −0.0086 (9) | 0.0035 (9) | −0.0059 (9) |
C21 | 0.0209 (12) | 0.0276 (12) | 0.0373 (14) | −0.0124 (10) | 0.0089 (10) | −0.0073 (11) |
C22 | 0.0331 (14) | 0.0324 (14) | 0.0502 (17) | −0.0149 (11) | 0.0257 (13) | −0.0216 (13) |
C23 | 0.0477 (17) | 0.0424 (15) | 0.0403 (15) | −0.0287 (13) | 0.0258 (13) | −0.0298 (13) |
C24 | 0.0326 (13) | 0.0336 (13) | 0.0270 (12) | −0.0223 (11) | 0.0116 (10) | −0.0171 (10) |
P25 | 0.0168 (3) | 0.0172 (2) | 0.0135 (2) | −0.0086 (2) | 0.00278 (19) | −0.00540 (19) |
O26 | 0.0208 (8) | 0.0215 (7) | 0.0173 (7) | −0.0112 (6) | 0.0044 (6) | −0.0068 (6) |
N27 | 0.0201 (9) | 0.0207 (9) | 0.0179 (9) | −0.0133 (8) | 0.0021 (7) | −0.0043 (7) |
C28 | 0.0222 (11) | 0.0156 (10) | 0.0183 (10) | −0.0091 (8) | −0.0003 (8) | −0.0026 (8) |
C29 | 0.0162 (10) | 0.0167 (9) | 0.0192 (10) | −0.0068 (8) | −0.0006 (8) | −0.0030 (8) |
C30 | 0.0288 (12) | 0.0226 (11) | 0.0233 (11) | −0.0142 (10) | 0.0007 (10) | −0.0040 (9) |
C31 | 0.0291 (12) | 0.0342 (13) | 0.0165 (10) | −0.0147 (11) | 0.0007 (9) | 0.0002 (9) |
C32 | 0.0240 (12) | 0.0327 (13) | 0.0183 (11) | −0.0056 (10) | 0.0000 (9) | −0.0073 (10) |
C33 | 0.0259 (12) | 0.0293 (12) | 0.0250 (12) | −0.0125 (10) | 0.0028 (10) | −0.0120 (10) |
C34 | 0.0226 (11) | 0.0250 (11) | 0.0201 (11) | −0.0132 (9) | 0.0042 (9) | −0.0069 (9) |
C35 | 0.0237 (12) | 0.0228 (11) | 0.0259 (12) | −0.0096 (9) | 0.0015 (9) | −0.0099 (9) |
C36 | 0.0240 (12) | 0.0218 (11) | 0.0359 (14) | −0.0056 (10) | −0.0056 (10) | −0.0058 (10) |
C37 | 0.0187 (10) | 0.0215 (10) | 0.0152 (9) | −0.0113 (8) | 0.0000 (8) | −0.0075 (8) |
C38 | 0.0201 (11) | 0.0220 (11) | 0.0181 (10) | −0.0091 (9) | 0.0040 (8) | −0.0070 (9) |
C39 | 0.0303 (13) | 0.0199 (11) | 0.0216 (11) | −0.0085 (10) | 0.0028 (9) | −0.0012 (9) |
C40 | 0.0331 (13) | 0.0263 (12) | 0.0170 (10) | −0.0155 (10) | 0.0023 (10) | −0.0005 (9) |
C41 | 0.0258 (12) | 0.0318 (12) | 0.0199 (11) | −0.0125 (10) | 0.0078 (9) | −0.0087 (9) |
C42 | 0.0230 (11) | 0.0224 (11) | 0.0200 (11) | −0.0096 (9) | 0.0032 (9) | −0.0076 (9) |
C43 | 0.0221 (11) | 0.0182 (10) | 0.0142 (9) | −0.0069 (8) | 0.0026 (8) | −0.0047 (8) |
C44 | 0.0200 (11) | 0.0258 (11) | 0.0198 (11) | −0.0115 (9) | 0.0025 (9) | −0.0074 (9) |
C45 | 0.0259 (12) | 0.0289 (12) | 0.0321 (13) | −0.0177 (10) | 0.0013 (10) | −0.0117 (10) |
C46 | 0.0379 (14) | 0.0257 (12) | 0.0261 (12) | −0.0186 (11) | −0.0003 (10) | −0.0093 (10) |
C47 | 0.0296 (13) | 0.0207 (11) | 0.0238 (11) | −0.0089 (9) | 0.0038 (9) | −0.0108 (9) |
C48 | 0.0226 (11) | 0.0220 (10) | 0.0187 (10) | −0.0112 (9) | 0.0035 (9) | −0.0055 (8) |
P1—O2 | 1.4846 (15) | P25—O26 | 1.4933 (15) |
P1—N3 | 1.6367 (19) | P25—N27 | 1.6426 (19) |
P1—C13 | 1.802 (2) | P25—C37 | 1.808 (2) |
P1—C19 | 1.808 (2) | P25—C43 | 1.797 (2) |
N3—C4 | 1.474 (2) | N27—C28 | 1.469 (3) |
N3—H31 | 0.856 (16) | N27—H271 | 0.841 (16) |
C4—C5 | 1.517 (3) | C28—C29 | 1.524 (3) |
C4—C11 | 1.532 (3) | C28—C35 | 1.538 (3) |
C4—H41 | 0.980 | C28—H281 | 0.988 |
C5—C6 | 1.391 (3) | C29—C30 | 1.391 (3) |
C5—C10 | 1.391 (3) | C29—C34 | 1.386 (3) |
C6—C7 | 1.383 (3) | C30—C31 | 1.391 (3) |
C6—H61 | 0.948 | C30—H301 | 0.944 |
C7—C8 | 1.383 (4) | C31—C32 | 1.378 (4) |
C7—H71 | 0.953 | C31—H311 | 0.951 |
C8—C9 | 1.380 (4) | C32—C33 | 1.390 (3) |
C8—H81 | 0.950 | C32—H321 | 0.961 |
C9—C10 | 1.389 (4) | C33—C34 | 1.392 (3) |
C9—H91 | 0.940 | C33—H331 | 0.952 |
C10—H101 | 0.936 | C34—H341 | 0.945 |
C11—C12 | 1.520 (3) | C35—C36 | 1.527 (3) |
C11—H111 | 0.980 | C35—H352 | 0.986 |
C11—H112 | 0.967 | C35—H351 | 0.982 |
C12—H121 | 0.975 | C36—H362 | 0.968 |
C12—H122 | 0.977 | C36—H361 | 0.975 |
C12—H123 | 0.971 | C36—H363 | 0.972 |
C13—C14 | 1.393 (3) | C37—C38 | 1.390 (3) |
C13—C18 | 1.395 (3) | C37—C42 | 1.397 (3) |
C14—C15 | 1.390 (3) | C38—C39 | 1.391 (3) |
C14—H141 | 0.938 | C38—H381 | 0.941 |
C15—C16 | 1.387 (4) | C39—C40 | 1.387 (3) |
C15—H151 | 0.928 | C39—H391 | 0.945 |
C16—C17 | 1.379 (4) | C40—C41 | 1.387 (3) |
C16—H161 | 0.934 | C40—H401 | 0.952 |
C17—C18 | 1.392 (3) | C41—C42 | 1.387 (3) |
C17—H171 | 0.949 | C41—H411 | 0.937 |
C18—H181 | 0.940 | C42—H421 | 0.929 |
C19—C20 | 1.399 (3) | C43—C44 | 1.406 (3) |
C19—C24 | 1.387 (3) | C43—C48 | 1.392 (3) |
C20—C21 | 1.383 (3) | C44—C45 | 1.389 (3) |
C20—H201 | 0.967 | C44—H441 | 0.950 |
C21—C22 | 1.379 (4) | C45—C46 | 1.382 (4) |
C21—H211 | 0.951 | C45—H451 | 0.925 |
C22—C23 | 1.391 (4) | C46—C47 | 1.398 (4) |
C22—H221 | 0.933 | C46—H461 | 0.932 |
C23—C24 | 1.384 (3) | C47—C48 | 1.388 (3) |
C23—H231 | 0.942 | C47—H471 | 0.933 |
C24—H241 | 0.925 | C48—H481 | 0.935 |
O2—P1—N3 | 119.94 (9) | O26—P25—N27 | 119.61 (9) |
O2—P1—C13 | 111.80 (9) | O26—P25—C37 | 109.99 (9) |
N3—P1—C13 | 102.43 (10) | N27—P25—C37 | 102.69 (10) |
O2—P1—C19 | 110.23 (9) | O26—P25—C43 | 110.87 (9) |
N3—P1—C19 | 105.15 (10) | N27—P25—C43 | 104.84 (10) |
C13—P1—C19 | 106.21 (9) | C37—P25—C43 | 108.07 (10) |
P1—N3—C4 | 120.91 (14) | P25—N27—C28 | 122.16 (15) |
P1—N3—H31 | 113.3 (12) | P25—N27—H271 | 114.1 (12) |
C4—N3—H31 | 114.3 (12) | C28—N27—H271 | 115.3 (12) |
N3—C4—C5 | 110.46 (17) | N27—C28—C29 | 114.02 (17) |
N3—C4—C11 | 110.64 (17) | N27—C28—C35 | 107.53 (17) |
C5—C4—C11 | 113.02 (18) | C29—C28—C35 | 111.51 (18) |
N3—C4—H41 | 108.1 | N27—C28—H281 | 108.1 |
C5—C4—H41 | 106.1 | C29—C28—H281 | 106.9 |
C11—C4—H41 | 108.3 | C35—C28—H281 | 108.7 |
C4—C5—C6 | 121.51 (19) | C28—C29—C30 | 121.5 (2) |
C4—C5—C10 | 119.7 (2) | C28—C29—C34 | 120.35 (19) |
C6—C5—C10 | 118.8 (2) | C30—C29—C34 | 118.2 (2) |
C5—C6—C7 | 120.4 (2) | C29—C30—C31 | 121.3 (2) |
C5—C6—H61 | 120.3 | C29—C30—H301 | 119.1 |
C7—C6—H61 | 119.3 | C31—C30—H301 | 119.5 |
C6—C7—C8 | 120.3 (3) | C30—C31—C32 | 119.9 (2) |
C6—C7—H71 | 119.1 | C30—C31—H311 | 119.8 |
C8—C7—H71 | 120.5 | C32—C31—H311 | 120.3 |
C7—C8—C9 | 119.8 (2) | C31—C32—C33 | 119.6 (2) |
C7—C8—H81 | 120.9 | C31—C32—H321 | 119.7 |
C9—C8—H81 | 119.2 | C33—C32—H321 | 120.7 |
C8—C9—C10 | 120.0 (2) | C32—C33—C34 | 120.1 (2) |
C8—C9—H91 | 120.5 | C32—C33—H331 | 119.6 |
C10—C9—H91 | 119.5 | C34—C33—H331 | 120.2 |
C5—C10—C9 | 120.6 (3) | C33—C34—C29 | 120.9 (2) |
C5—C10—H101 | 120.0 | C33—C34—H341 | 119.7 |
C9—C10—H101 | 119.4 | C29—C34—H341 | 119.3 |
C4—C11—C12 | 113.76 (19) | C28—C35—C36 | 113.74 (19) |
C4—C11—H111 | 107.7 | C28—C35—H352 | 108.0 |
C12—C11—H111 | 110.6 | C36—C35—H352 | 109.3 |
C4—C11—H112 | 108.3 | C28—C35—H351 | 107.8 |
C12—C11—H112 | 109.8 | C36—C35—H351 | 108.2 |
H111—C11—H112 | 106.4 | H352—C35—H351 | 109.8 |
C11—C12—H121 | 110.4 | C35—C36—H362 | 110.1 |
C11—C12—H122 | 110.6 | C35—C36—H361 | 109.1 |
H121—C12—H122 | 108.0 | H362—C36—H361 | 108.1 |
C11—C12—H123 | 111.5 | C35—C36—H363 | 111.5 |
H121—C12—H123 | 109.3 | H362—C36—H363 | 110.1 |
H122—C12—H123 | 106.9 | H361—C36—H363 | 107.8 |
P1—C13—C14 | 121.84 (17) | P25—C37—C38 | 117.22 (16) |
P1—C13—C18 | 118.28 (17) | P25—C37—C42 | 123.28 (17) |
C14—C13—C18 | 119.8 (2) | C38—C37—C42 | 119.5 (2) |
C13—C14—C15 | 120.0 (2) | C37—C38—C39 | 120.3 (2) |
C13—C14—H141 | 120.4 | C37—C38—H381 | 120.1 |
C15—C14—H141 | 119.6 | C39—C38—H381 | 119.6 |
C14—C15—C16 | 119.9 (2) | C38—C39—C40 | 120.0 (2) |
C14—C15—H151 | 120.2 | C38—C39—H391 | 118.8 |
C16—C15—H151 | 119.9 | C40—C39—H391 | 121.2 |
C15—C16—C17 | 120.3 (2) | C39—C40—C41 | 119.9 (2) |
C15—C16—H161 | 120.3 | C39—C40—H401 | 120.1 |
C17—C16—H161 | 119.4 | C41—C40—H401 | 120.1 |
C16—C17—C18 | 120.2 (2) | C40—C41—C42 | 120.4 (2) |
C16—C17—H171 | 119.2 | C40—C41—H411 | 120.9 |
C18—C17—H171 | 120.5 | C42—C41—H411 | 118.7 |
C13—C18—C17 | 119.7 (2) | C37—C42—C41 | 119.9 (2) |
C13—C18—H181 | 119.8 | C37—C42—H421 | 118.8 |
C17—C18—H181 | 120.5 | C41—C42—H421 | 121.3 |
P1—C19—C20 | 119.48 (17) | P25—C43—C44 | 118.93 (17) |
P1—C19—C24 | 121.36 (18) | P25—C43—C48 | 122.26 (18) |
C20—C19—C24 | 119.1 (2) | C44—C43—C48 | 118.8 (2) |
C19—C20—C21 | 120.8 (2) | C43—C44—C45 | 120.2 (2) |
C19—C20—H201 | 118.2 | C43—C44—H441 | 119.6 |
C21—C20—H201 | 121.0 | C45—C44—H441 | 120.1 |
C20—C21—C22 | 119.6 (2) | C44—C45—C46 | 120.3 (2) |
C20—C21—H211 | 119.4 | C44—C45—H451 | 119.7 |
C22—C21—H211 | 120.9 | C46—C45—H451 | 120.0 |
C21—C22—C23 | 120.1 (2) | C45—C46—C47 | 120.1 (2) |
C21—C22—H221 | 119.2 | C45—C46—H461 | 120.4 |
C23—C22—H221 | 120.7 | C47—C46—H461 | 119.5 |
C22—C23—C24 | 120.3 (2) | C46—C47—C48 | 119.6 (2) |
C22—C23—H231 | 120.7 | C46—C47—H471 | 120.0 |
C24—C23—H231 | 119.1 | C48—C47—H471 | 120.4 |
C19—C24—C23 | 120.1 (2) | C43—C48—C47 | 121.0 (2) |
C19—C24—H241 | 119.9 | C43—C48—H481 | 119.0 |
C23—C24—H241 | 120.0 | C47—C48—H481 | 120.0 |
D—H···A | D—H | H···A | D···A | D—H···A |
N27—H271···O2i | 0.84 | 2.08 | 2.923 (4) | 176 (2) |
N3—H31···O26 | 0.86 | 1.97 | 2.817 (4) | 173 (2) |
Symmetry code: (i) x−1, y, z. |
Acknowledgements
The authors appreciatively acknowledge the Cambridge Crystallographic Data Centre for access to CSD Enterprise. Crystallography used the CzechNanoLab Research Infrastructure supported by MEYS CR (project LM2023051). Authors' contributions are as follows: Conceptualization, MP, FE and FS; methodology, FE, MP and FS; X-ray crystallography, MD and ES; investigation, FE and MP; writing (original draft), MP; writing (review and editing of the manuscript), MP, MD and ES; visualization, MP and ES; funding acquisition, FE and SB; resources, MD, ES, FE, FS and SB; supervision, MP, FS and SB.
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