research communications
Synthesis, trans-bis{(2E)-N-phenyl-2-[(2E)-3-phenyl-2-propen-1-ylidene]hydrazinecarbothioamidato-κ2N1,S}palladium(II)
and Hirshfeld analysis ofaEscola de Química e Alimentos, Universidade Federal do Rio Grande, Av. Itália km 08, Campus Carreiros, 96203-900 Rio Grande-RS, Brazil, bDepartamento de Química, Universidade Federal de Santa Maria, Av. Roraima s/n, Campus Universitário, 97105-900 Santa Maria-RS, Brazil, and cDepartamento de Química, Universidade Federal de Sergipe, Av. Marcelo Deda Chagas s/n, Campus Universitário, 49107-230 São Cristóvão-SE, Brazil
*Correspondence e-mail: leandro_bresolin@yahoo.com.br
The reaction of (2E)-N-phenyl-2-[(2E)-3-phenyl-2-propen-1-ylidene]hydrazinecarbothioamide (common name: cinnamaldehyde-4-phenylthiosemicarbazone) deprotonated with NaOH in ethanol with an ethanolic suspension of PdII chloride in a 2:1 molar ratio yielded the title compound, [Pd(C16H14N3S)2]. The anionic ligands act as metal chelators, κ2N1S-donors, forming five-membered rings with a trans-configuration. The PdII ion is fourfold coordinated in a slightly distorted square-planar geometry. For each ligand, one H⋯S and one H⋯N intramolecular interactions are observed, with S(5) and S(6) graph-set motifs. Concerning the H⋯S interactions, the coordination sphere resembles a hydrogen-bonded macrocyclic environment-type. In the crystal, the complexes are linked via pairs of H⋯S interactions, with graph-set motif R22(8), and building a mono-periodic hydrogen-bonded ribbon along [001]. The Hirshfeld surface analysis indicates that the major contributions for the crystal cohesion are: H⋯H (45.3%), H⋯C/C⋯H (28.0%), H⋯S/S⋯H (8.0%) and H⋯N/N⋯H (7.4%).
Keywords: palladium(II) thiosemicarbazone complex; cinnamaldehyde 4-phenylthiosemicarbazone; Hirshfeld surface analysis; crystal structure.
CCDC reference: 2163054
1. Chemical context
As far as we know, the thiosemicarbazone chemistry can be traced back to the beginning of the 1900s, when a thiosemicarbazide derivative, H2N—N(H)C(=S)NR1R2, was used as chemical reagent for the characterization of and R3R4C=O. It was pointed out that the main product of the characterization reaction was a thiosemicarbazone derivative, R3R4C=N—N(H)C(=S)NR1R2 (Freund & Schander, 1902). In the second half of the 1950s, the use of 4-phenylthiosemicarbazide as reagent for the characterization of cinnamaldehyde was reported and the cinnamaldehyde 4-phenylthiosemicarbazone molecule, the ligand of the title compound, was the major product of the reaction (Tišler, 1956).
From early times, as a product of qualitative analysis reactions in the organic chemistry, thiosemicarbazone chemistry emerged as a large class of compounds present in a wide range of scientific disciplines. For example, the cinnamaldehyde 4-phenylthiosemicarbazone derivative shows anti-corrosion activity for copper in nitric acid media (Mostafa, 2000).
One of the most important applications of thiosemicarbazone derivatives is in coordination chemistry. The N—N(H)—C(=S) fragment can be easily deprotonated and the negative charge is then delocalized over the N—N—C—S entity, which enables chemical bonding with many different metal centers, with different e.g., chelating and bridging. Complexes with anionic thiosemicarbazone derivatives are more common as a result of the charge density and the geometry adopted by the ligands (Lobana et al., 2009).
and a diversity of coordination modes,Many complexes with thiosemicarbazone ligands show relevant biological activity. For example, PdII heteroleptic complexes with a cinnamaldehyde-thiosemicarbazone derivative turned out to be very active on in vitro Human Topoisomerase IIα inhibition, a biological target of prime importance for cancer research (Rocha et al., 2019). Other PdII homoleptic and heteroleptic complexes with cinnamaldehyde-thiosemicarbazone as ligands were reported to be active against five human cancer cell lines in vitro: colon (Caco-2), cervix (HeLa), hepatocellular (HepG2), breast (MCF-7) and prostate (PC-3) (Nyawadea et al., 2021). Finally, NiII homoleptic cinnamaldehyde-4-ethylthiosemicarbazone and cinnamaldehyde-4-methylthiosemicarbazone derivative complexes showed, also in in vitro assays, inhibition of cell growth for two selected human tumour cell lines: breast (MCF-7) and lung (A549) (Farias et al., 2021).
Another interesting approach for cinnamaldehyde-thiosemicarbazone chemistry is the synthesis of nanostructured materials through thermal and solvothermal decomposition techniques, where thiosemicarbazone complexes are employed as single-molecule precursors. It was reported that the thermal and solvothermal decomposition of ZnL2 and ZnCl2(LH)2 homo- and heteroleptic complexes results in the formation of ZnS nanocrystallites (for this section only, L = the anionic form of cinnamaldehyde-thiosemicarbazone and LH = the neutral form of it) (Palve & Garje, 2011). Similarly, CdII heteroleptic complexes CdCl2(LH)2 and CdI2(LH)2 were used as starting materials to obtain CdS nanoparticles (Pawar et al., 2016) and CoS or Co9S8 nanocrystallites were synthesized from CoL2 and CoCl2(LH)2 homo- and heteroleptic complexes (Pawar & Garje, 2015).
Motivated by the bioinorganic chemistry and materials science of the cinnamaldehyde-thiosemicarbazone complexes, we report herein the synthesis, II homoleptic complex where the cinnamaldehyde-4-phenylthiosemicarbazone molecules act as anionic ligands.
and Hirshfeld analysis of a new Pd2. Structural commentary
The ). The complex consists of one PdII metal center and two deprotonated cinnamaldehyde-4-phenylthiosemicarbazone ligands, which act as metal chelators, forming five-membered metallarings. The ligands are coordinated through N and S atoms in a trans-configuration, κ2N1S-donors, and the N1—Pd1—N4 and the S1—Pd1—S2 angles are 178.31 (6) and 177.57 (2)°, respectively. The metal ion is fourfold coordinated in a slightly distorted square-planar geometry. The maximum deviation from the mean plane through the Pd1/N1/N4/S1/S2 fragment is 0.0227 (5) Å for Pd1 and the r.m.s. for the selected atoms is 0.0151 Å. Concerning the geometry of the N—N—C—S entities, the N1—N2—C10—S1 torsion angle is 0.6 (3)°, while N4—N5—C26—S2 is −0.4 (3)°. Both of the ligands are non-planar, with the angle between the mean planes through the C4–C9 and the C11–C16 aromatic rings being 15.7 (1)°, while that between the C20–C25 and the C27–C32 rings is 45.5 (8)°.
comprises one molecule of the title compound, with all atoms being located in general positions (Fig. 1Four intramolecular hydrogen-bonding interactions are observed (Fig. 2, Table 1): C1—H1⋯S2 and C17—H14⋯S1, with graph-set motif S(5), and C16—H13⋯N2 and C32—H26⋯N5, with graph-set motif S(6). Considering the S(5) rings, a hydrogen-bonded macrocyclic coordination environment-type can be suggested for the PdII metal center, while the S(6) rings contribute to the stabilization of the molecular structure.
Finally, the anionic form of the ligands was assigned because of the absence of hydrazinic H atoms and the change in the bond lengths of the N—N—C—S entities. For the neutral or free, i.e., non-coordinating thiosemicarbazones, the N—N and C—S bonds have lengths of double-bond character, while the N—C bond shows lengths of single-bond type, which can be written as a N=N(H)—C=S fragment. When the acidic H atom of the hydrazinic fragment is removed, the negative charge is delocalized over the N—N—C—S chain and the bond lengths change to intermediate values. Thus, the N—N and the C—S bond lengths assume single-bond character, being longer, and the N—C bond lengths assume double-bond character, being shorter. Information about the bond lengths of the N—N—C—S entities for the cinnamaldehyde-4-phenylthiosemicarbazone molecule, C16H15N3S, and the Ni(C16H14N3S)2 (Song et al., 2014) and Pd(C16H14N3S)2 complexes, this work, are summarized in Table 2. These data are in agreement with reported bond lengths values for thiosemicarbazone derivatives (Oliveira et al., 2014).
|
3. Supramolecular features
In the crystal, the molecules are connected via pairs of N—H⋯S interactions with graph-set motif (8), forming a mono-periodic hydrogen-bonded ribbon along [001] (Fig. 3, Table 1).
The Hirshfeld surface analysis (Hirshfeld, 1977) of the was performed with Crystal Explorer (Wolff et al., 2012). The graphical representations of the Hirshfeld surface for the title compound are represented using a ball-and-stick model with transparency, in two side-views and separate figures for clarity (Fig. 4). The locations of the strongest intermolecular contacts, i.e, the regions around the S1, H27, S2 and H28 atoms, are indicated in magenta. These atoms are those involved in the N—H⋯S intermolecular interactions represented in the previous figure (Fig. 3): N3—H27⋯S2i and N6—H28⋯S1ii [symmetry codes: (i) x, −y + , z + ; (ii) x, −y + , z − ]. The Hirshfeld surface analysis of the also indicates that the most relevant intermolecular interactions for crystal packing are the following: (a) H⋯H (45.3%), (b) H⋯C/C⋯H (28.0%), (c) H⋯S/S⋯H (8.0%) and (d) H⋯N/N⋯H (7.4%). The contributions to the crystal packing are shown as two-dimensional Hirshfeld surface fingerprint plots with cyan dots (Fig. 5). The di (x-axis) and the de (y-axis) values are the closest internal and external distances from given points on the Hirshfeld surface (in Å).
4. Database survey
To the best of our knowledge and using database tools such as SciFinderTM (Chemical Abstracts Service, 2023), there is only one report of the of a compound bearing cinnamaldehyde-4-phenylthiosemicarbazone as non-coordinated molecule (C16H15N3S) and as a ligand, viz. in the homoleptic [Ni(C16H14N3S)2] complex (Song et al., 2014). The of the reference coordination compound consists of one NiII ion, which lies on an inversion center, and two deprotonated cinnamaldehyde-4-phenylthiosemicarbazone ligands, in one of which the atoms are general positions while the second is generated by symmetry (Fig. 6) [symmetry code: (c) −x + 1, −y + 2, −z + 1]. The negative charge of the ligand was assigned by the absence of a hydrazinic H atom and the bond distances in the N—N—C—S chain (please see the remarks in the Structural commentary section of this work and also Table 2). The coordination environment of the NiII complex is quite similar to that for the PdII metal center of the title compound: the anionic ligands act as metal chelators, κ2N1S-donors, with N and S atoms in trans-positions (180°), the metal center is fourfold coordinated in a square-planar geometry and the N—N—C—S entity torsion angle is 1.5 (6)°.
Although the coordination sphere of the PdII title compound and the NiII analogue compound are similar, the supramolecular arrangement of the complexes is totally different. In the crystal, the molecules of the centrosymmetric NiII coordination compound are linked into a three-dimensional hydrogen-bonded network. The H⋯S intermolecular interactions, like those observed in the PdII complex (Fig. 3), are not present in this case and only very weak H⋯C and H⋯N intermolecular contacts are noted. The values for the hydrogen-bonding of the asymmetric part of the complex amount to: C6—H6⋯C5a = 2.90 (5) Å, C6—H6⋯N1a = 2.73 (5) Å, C9—H9⋯C14b = 2.86 (6) Å and N1—H1A⋯C6a = 2.90 (7) Å [symmetry codes: (a) −x + 1, y + , −z + ; (b) −x, y + , −z + ] (Fig. 6). The H⋯C and H⋯N distances are slightly above the sum of the van der Waals radii for the respective atoms (Bondi, 1964; Rowland & Taylor, 1996) and they are the only intermolecular contacts observed for the supramolecular structure of the NiII complex.
The Hirshfeld surface analysis (Hirshfeld, 1977) of the of the NiII coordination compound was also performed with CrystalExplorer (Wolff et al., 2012). The graphical representation of the Hirshfeld surface is represented using a ball-and-stick model with transparency and the locations of the strongest intermolecular contacts are draw in magenta, i.e., the regions around the C6, H6, N1, H1A, H9# and C14# atoms (Fig. 7) [symmetry code: (#) −x + 1, −y + 2, −z + 1]. These data are in agreement with the weak H⋯C and H⋯N intermolecular contacts observed in the previous figure (Fig. 6). The contributions to the crystal packing are shown as two-dimensional Hirshfeld surface fingerprint plots with cyan dots (Fig. 8). The Hirshfeld surface analysis of the also suggests that the most important intermolecular interactions for crystal packing are the following: (a) H⋯H (47.4%), (b) H⋯C/C⋯H (27.6%), (c) H⋯N/N⋯H (7.0%) and (d) H⋯S/S⋯H (6.5%). The di (x-axis) and the de (y-axis) values are the closest internal and external distances from given points on the Hirshfeld surface contacts (in Å). While for the PdII title compound and the NiII reference compound the most important intermolecular contacts are H⋯H and the H⋯C/C⋯H, the order of importance changes for the H⋯S/S⋯H and H⋯N/N⋯H contacts. For the crystal packing of the PdII complex, the H⋯S/S⋯H contacts are more important then H⋯N/N⋯H contacts, while for the NiII complex this order is the opposite.
5. Synthesis and crystallization
The starting materials are commercially available and were used without further purification. The synthesis of the ligand was adapted from a previously reported procedure (Freund & Schander, 1902; Tišler, 1956). Cinnamaldehyde-4-phenylthiosemicarbazone was dissolved in ethanol (4 mmol, 50 mL) and deprotonated with one pellet of NaOH with stirring maintained for 2 h until the solution turned yellow. Simultaneously, an ethanolic suspension of palladium(II) chloride (2 mmol, 50 mL) was prepared under continuous stirring. A yellow-colored mixture of the ethanolic solution and the ethanolic suspension was maintained with stirring at room temperature for 8 h, until the PdCl2 was consumed. Orange single crystals suitable for X-ray diffraction were obtained by the slow evaporation of the solvent.
6. Refinement
Crystal data, data collection and structure . Hydrogen atoms were located in a difference-Fourier map, but were positioned with idealized geometry and refined isotropically using a riding model (HFIX command), with Uiso(H) = 1.2 Ueq(C, N), and with C—H = 0.93 Å and N—H = 0.86 Å.
details are summarized in Table 3
|
Supporting information
CCDC reference: 2163054
https://doi.org/10.1107/S2056989023008654/zn2032sup1.cif
contains datablocks I, publication_text. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989023008654/zn2032Isup2.hkl
Data collection: APEX3 (Bruker, 2015); cell
SAINT (Bruker, 2015); data reduction: SAINT (Bruker, 2015); program(s) used to solve structure: SHELXT2014/5 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018/3 (Sheldrick, 2015b); molecular graphics: DIAMOND (Brandenburg, 2006), CrystalExplorer (Wolff et al., 2012); software used to prepare material for publication: WinGX (Farrugia, 2012), publCIF (Westrip, 2010) and enCIFer (Allen et al., 2004).[Pd(C16H14N3S)2] | F(000) = 1360 |
Mr = 667.12 | Dx = 1.505 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 15.084 (5) Å | Cell parameters from 9138 reflections |
b = 11.418 (4) Å | θ = 2.2–28.3° |
c = 17.097 (6) Å | µ = 0.81 mm−1 |
β = 91.097 (9)° | T = 299 K |
V = 2944.0 (16) Å3 | Block, orange |
Z = 4 | 0.25 × 0.18 × 0.11 mm |
Bruker D8 Venture Photon 100 area detector diffractometer | 6204 reflections with I > 2σ(I) |
Radiation source: microfocus X ray tube | Rint = 0.042 |
φ and ω scans | θmax = 28.4°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Krause et al., 2015) | h = −20→20 |
Tmin = 0.699, Tmax = 0.746 | k = −15→15 |
87933 measured reflections | l = −22→22 |
7344 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.026 | H-atom parameters constrained |
wR(F2) = 0.063 | w = 1/[σ2(Fo2) + (0.0241P)2 + 1.5227P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.003 |
7344 reflections | Δρmax = 0.34 e Å−3 |
370 parameters | Δρmin = −0.50 e Å−3 |
0 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.93114 (12) | 0.25646 (18) | 0.41478 (10) | 0.0408 (4) | |
H1 | 0.911357 | 0.222755 | 0.368099 | 0.049* | |
C2 | 1.02188 (12) | 0.29262 (18) | 0.41878 (11) | 0.0429 (4) | |
H2 | 1.042322 | 0.334403 | 0.462190 | 0.052* | |
C3 | 1.07777 (12) | 0.26780 (19) | 0.36174 (11) | 0.0434 (4) | |
H3 | 1.054715 | 0.228656 | 0.318196 | 0.052* | |
C4 | 1.17186 (12) | 0.29659 (18) | 0.36156 (11) | 0.0436 (4) | |
C5 | 1.20873 (15) | 0.3801 (2) | 0.41107 (14) | 0.0566 (5) | |
H4 | 1.172634 | 0.422924 | 0.444057 | 0.068* | |
C6 | 1.29897 (17) | 0.4000 (3) | 0.41148 (17) | 0.0738 (8) | |
H5 | 1.323135 | 0.457206 | 0.444183 | 0.089* | |
C7 | 1.35360 (16) | 0.3362 (3) | 0.36419 (19) | 0.0765 (8) | |
H6 | 1.414532 | 0.348617 | 0.366163 | 0.092* | |
C8 | 1.31865 (17) | 0.2555 (3) | 0.31492 (18) | 0.0745 (8) | |
H7 | 1.355493 | 0.212955 | 0.282440 | 0.089* | |
C9 | 1.22814 (15) | 0.2358 (2) | 0.31256 (14) | 0.0613 (6) | |
H8 | 1.204591 | 0.181127 | 0.277638 | 0.074* | |
C10 | 0.85343 (12) | 0.31504 (17) | 0.59615 (10) | 0.0377 (4) | |
C11 | 0.95766 (12) | 0.42049 (17) | 0.68829 (10) | 0.0397 (4) | |
C12 | 0.95571 (14) | 0.48633 (19) | 0.75646 (11) | 0.0466 (5) | |
H9 | 0.904012 | 0.489377 | 0.785175 | 0.056* | |
C13 | 1.02970 (15) | 0.5473 (2) | 0.78205 (13) | 0.0559 (5) | |
H10 | 1.027308 | 0.591307 | 0.827731 | 0.067* | |
C14 | 1.10674 (15) | 0.5437 (2) | 0.74084 (14) | 0.0584 (6) | |
H11 | 1.156512 | 0.585126 | 0.757969 | 0.070* | |
C15 | 1.10894 (14) | 0.4777 (2) | 0.67371 (14) | 0.0597 (6) | |
H12 | 1.161063 | 0.474407 | 0.645610 | 0.072* | |
C16 | 1.03566 (13) | 0.4160 (2) | 0.64695 (12) | 0.0516 (5) | |
H13 | 1.038671 | 0.371677 | 0.601430 | 0.062* | |
C17 | 0.55839 (12) | 0.16720 (18) | 0.50233 (11) | 0.0416 (4) | |
H14 | 0.578917 | 0.185524 | 0.552491 | 0.050* | |
C18 | 0.46597 (12) | 0.14045 (18) | 0.49358 (11) | 0.0429 (4) | |
H15 | 0.444566 | 0.115183 | 0.445071 | 0.052* | |
C19 | 0.40947 (13) | 0.15030 (19) | 0.55209 (12) | 0.0472 (5) | |
H16 | 0.433316 | 0.172755 | 0.600361 | 0.057* | |
C20 | 0.31419 (13) | 0.12958 (18) | 0.54837 (12) | 0.0454 (4) | |
C21 | 0.27211 (14) | 0.0746 (2) | 0.48604 (13) | 0.0513 (5) | |
H17 | 0.305174 | 0.047797 | 0.444312 | 0.062* | |
C22 | 0.18134 (15) | 0.0590 (2) | 0.48519 (16) | 0.0644 (6) | |
H18 | 0.153934 | 0.021536 | 0.442935 | 0.077* | |
C23 | 0.13142 (16) | 0.0979 (3) | 0.54540 (18) | 0.0713 (8) | |
H19 | 0.070293 | 0.087173 | 0.544212 | 0.086* | |
C24 | 0.17159 (17) | 0.1526 (3) | 0.60741 (18) | 0.0739 (8) | |
H20 | 0.137628 | 0.180199 | 0.648339 | 0.089* | |
C25 | 0.26240 (16) | 0.1673 (2) | 0.60978 (15) | 0.0653 (6) | |
H21 | 0.289272 | 0.202928 | 0.653032 | 0.078* | |
C26 | 0.63696 (12) | 0.14116 (18) | 0.31857 (11) | 0.0406 (4) | |
C27 | 0.52836 (12) | 0.06730 (19) | 0.21755 (12) | 0.0456 (5) | |
C28 | 0.50883 (17) | 0.0809 (2) | 0.13948 (14) | 0.0657 (7) | |
H22 | 0.547569 | 0.121832 | 0.107827 | 0.079* | |
C29 | 0.4319 (2) | 0.0341 (3) | 0.10764 (19) | 0.0878 (10) | |
H23 | 0.418657 | 0.044846 | 0.054772 | 0.105* | |
C30 | 0.37560 (18) | −0.0272 (3) | 0.1525 (2) | 0.0837 (9) | |
H24 | 0.323855 | −0.058496 | 0.130698 | 0.100* | |
C31 | 0.39511 (18) | −0.0431 (3) | 0.23033 (19) | 0.0803 (8) | |
H25 | 0.356585 | −0.085945 | 0.261047 | 0.096* | |
C32 | 0.47140 (16) | 0.0038 (2) | 0.26388 (15) | 0.0633 (6) | |
H26 | 0.484228 | −0.007087 | 0.316803 | 0.076* | |
N1 | 0.87363 (10) | 0.26614 (14) | 0.47008 (8) | 0.0375 (3) | |
N2 | 0.90767 (10) | 0.31587 (16) | 0.53850 (9) | 0.0428 (4) | |
N3 | 0.87873 (10) | 0.36111 (16) | 0.66658 (9) | 0.0442 (4) | |
H27 | 0.841082 | 0.352842 | 0.703313 | 0.053* | |
N4 | 0.61600 (10) | 0.16837 (14) | 0.44748 (9) | 0.0383 (3) | |
N5 | 0.58090 (10) | 0.13619 (16) | 0.37463 (9) | 0.0437 (4) | |
N6 | 0.61038 (11) | 0.11296 (18) | 0.24427 (9) | 0.0521 (5) | |
H28 | 0.649000 | 0.124627 | 0.208750 | 0.063* | |
Pd1 | 0.74528 (2) | 0.21629 (2) | 0.46039 (2) | 0.03379 (5) | |
S1 | 0.74605 (3) | 0.25655 (5) | 0.59231 (3) | 0.04797 (12) | |
S2 | 0.74676 (3) | 0.18416 (6) | 0.32859 (3) | 0.04861 (13) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0320 (9) | 0.0589 (11) | 0.0314 (9) | −0.0018 (8) | 0.0020 (7) | −0.0014 (8) |
C2 | 0.0327 (9) | 0.0625 (12) | 0.0337 (9) | −0.0045 (8) | −0.0002 (7) | 0.0005 (8) |
C3 | 0.0337 (9) | 0.0606 (12) | 0.0358 (9) | −0.0037 (9) | 0.0015 (7) | 0.0006 (9) |
C4 | 0.0326 (9) | 0.0575 (12) | 0.0407 (10) | −0.0026 (8) | 0.0018 (7) | 0.0101 (9) |
C5 | 0.0445 (12) | 0.0656 (14) | 0.0596 (13) | −0.0060 (10) | −0.0040 (10) | 0.0032 (11) |
C6 | 0.0551 (15) | 0.0816 (18) | 0.0838 (18) | −0.0223 (14) | −0.0209 (14) | 0.0151 (15) |
C7 | 0.0348 (12) | 0.094 (2) | 0.100 (2) | −0.0080 (13) | −0.0040 (13) | 0.0419 (18) |
C8 | 0.0416 (13) | 0.097 (2) | 0.0858 (19) | 0.0078 (13) | 0.0206 (13) | 0.0207 (17) |
C9 | 0.0445 (12) | 0.0805 (17) | 0.0594 (14) | −0.0030 (11) | 0.0151 (10) | −0.0011 (12) |
C10 | 0.0314 (9) | 0.0475 (10) | 0.0343 (9) | 0.0002 (7) | 0.0017 (7) | −0.0005 (7) |
C11 | 0.0351 (9) | 0.0486 (10) | 0.0354 (9) | 0.0000 (8) | −0.0029 (7) | 0.0001 (8) |
C12 | 0.0446 (11) | 0.0557 (12) | 0.0396 (10) | −0.0024 (9) | 0.0016 (8) | −0.0032 (9) |
C13 | 0.0578 (13) | 0.0596 (13) | 0.0499 (12) | −0.0054 (11) | −0.0067 (10) | −0.0103 (10) |
C14 | 0.0443 (12) | 0.0655 (14) | 0.0650 (14) | −0.0103 (10) | −0.0128 (10) | −0.0005 (11) |
C15 | 0.0341 (10) | 0.0826 (17) | 0.0624 (14) | −0.0034 (11) | 0.0010 (10) | −0.0032 (12) |
C16 | 0.0361 (10) | 0.0735 (14) | 0.0453 (11) | 0.0009 (10) | 0.0016 (8) | −0.0096 (10) |
C17 | 0.0360 (9) | 0.0542 (11) | 0.0347 (9) | −0.0016 (8) | 0.0036 (7) | −0.0037 (8) |
C18 | 0.0356 (9) | 0.0542 (11) | 0.0392 (10) | −0.0007 (8) | 0.0053 (8) | −0.0008 (8) |
C19 | 0.0413 (10) | 0.0586 (12) | 0.0420 (10) | −0.0018 (9) | 0.0078 (8) | −0.0009 (9) |
C20 | 0.0390 (10) | 0.0505 (11) | 0.0471 (11) | 0.0018 (8) | 0.0116 (8) | 0.0071 (9) |
C21 | 0.0415 (11) | 0.0609 (13) | 0.0516 (12) | 0.0024 (10) | 0.0072 (9) | 0.0081 (10) |
C22 | 0.0468 (13) | 0.0740 (16) | 0.0722 (16) | −0.0050 (12) | −0.0071 (11) | 0.0167 (13) |
C23 | 0.0379 (12) | 0.0804 (18) | 0.096 (2) | 0.0040 (12) | 0.0149 (13) | 0.0283 (16) |
C24 | 0.0539 (14) | 0.0804 (18) | 0.089 (2) | 0.0055 (13) | 0.0362 (14) | 0.0086 (16) |
C25 | 0.0539 (14) | 0.0782 (16) | 0.0645 (15) | −0.0027 (12) | 0.0246 (11) | −0.0050 (13) |
C26 | 0.0315 (9) | 0.0554 (11) | 0.0351 (9) | −0.0013 (8) | 0.0021 (7) | −0.0016 (8) |
C27 | 0.0323 (9) | 0.0553 (12) | 0.0488 (11) | 0.0009 (8) | −0.0040 (8) | −0.0101 (9) |
C28 | 0.0631 (15) | 0.0751 (16) | 0.0582 (14) | −0.0127 (13) | −0.0205 (12) | 0.0074 (12) |
C29 | 0.084 (2) | 0.095 (2) | 0.083 (2) | −0.0132 (18) | −0.0477 (17) | 0.0046 (17) |
C30 | 0.0520 (15) | 0.089 (2) | 0.109 (2) | −0.0128 (14) | −0.0269 (16) | −0.0201 (18) |
C31 | 0.0566 (15) | 0.087 (2) | 0.098 (2) | −0.0283 (14) | 0.0074 (15) | −0.0243 (17) |
C32 | 0.0520 (13) | 0.0787 (16) | 0.0592 (14) | −0.0154 (12) | 0.0031 (11) | −0.0121 (12) |
N1 | 0.0299 (7) | 0.0523 (9) | 0.0303 (7) | −0.0014 (6) | 0.0009 (6) | −0.0023 (6) |
N2 | 0.0324 (8) | 0.0645 (10) | 0.0316 (8) | −0.0058 (7) | 0.0017 (6) | −0.0059 (7) |
N3 | 0.0348 (8) | 0.0659 (11) | 0.0319 (8) | −0.0070 (8) | 0.0045 (6) | −0.0067 (7) |
N4 | 0.0304 (7) | 0.0496 (9) | 0.0349 (8) | −0.0023 (7) | 0.0030 (6) | −0.0023 (7) |
N5 | 0.0322 (8) | 0.0646 (11) | 0.0342 (8) | −0.0057 (7) | 0.0027 (6) | −0.0055 (7) |
N6 | 0.0341 (8) | 0.0878 (14) | 0.0346 (8) | −0.0110 (9) | 0.0028 (7) | −0.0081 (8) |
Pd1 | 0.02574 (7) | 0.04563 (8) | 0.03007 (7) | −0.00040 (5) | 0.00212 (5) | −0.00124 (5) |
S1 | 0.0344 (2) | 0.0749 (3) | 0.0349 (2) | −0.0119 (2) | 0.00699 (18) | −0.0100 (2) |
S2 | 0.0275 (2) | 0.0866 (4) | 0.0319 (2) | −0.0068 (2) | 0.00370 (17) | −0.0071 (2) |
C1—N1 | 1.300 (2) | C18—H15 | 0.9300 |
C1—C2 | 1.430 (3) | C19—C20 | 1.457 (3) |
C1—H1 | 0.9300 | C19—H16 | 0.9300 |
C2—C3 | 1.332 (3) | C20—C21 | 1.381 (3) |
C2—H2 | 0.9300 | C20—C25 | 1.389 (3) |
C3—C4 | 1.457 (3) | C21—C22 | 1.380 (3) |
C3—H3 | 0.9300 | C21—H17 | 0.9300 |
C4—C5 | 1.385 (3) | C22—C23 | 1.361 (4) |
C4—C9 | 1.389 (3) | C22—H18 | 0.9300 |
C5—C6 | 1.380 (3) | C23—C24 | 1.363 (4) |
C5—H4 | 0.9300 | C23—H19 | 0.9300 |
C6—C7 | 1.374 (4) | C24—C25 | 1.380 (3) |
C6—H5 | 0.9300 | C24—H20 | 0.9300 |
C7—C8 | 1.349 (4) | C25—H21 | 0.9300 |
C7—H6 | 0.9300 | C26—N5 | 1.291 (2) |
C8—C9 | 1.383 (3) | C26—N6 | 1.363 (2) |
C8—H7 | 0.9300 | C26—S2 | 1.7328 (19) |
C9—H8 | 0.9300 | C27—C28 | 1.370 (3) |
C10—N2 | 1.293 (2) | C27—C32 | 1.384 (3) |
C10—N3 | 1.362 (2) | C27—N6 | 1.410 (2) |
C10—S1 | 1.7520 (19) | C28—C29 | 1.380 (3) |
C11—C16 | 1.385 (3) | C28—H22 | 0.9300 |
C11—C12 | 1.388 (3) | C29—C30 | 1.351 (4) |
C11—N3 | 1.413 (2) | C29—H23 | 0.9300 |
C12—C13 | 1.380 (3) | C30—C31 | 1.369 (4) |
C12—H9 | 0.9300 | C30—H24 | 0.9300 |
C13—C14 | 1.371 (3) | C31—C32 | 1.384 (3) |
C13—H10 | 0.9300 | C31—H25 | 0.9300 |
C14—C15 | 1.374 (3) | C32—H26 | 0.9300 |
C14—H11 | 0.9300 | N1—N2 | 1.390 (2) |
C15—C16 | 1.381 (3) | N1—Pd1 | 2.0217 (16) |
C15—H12 | 0.9300 | N3—H27 | 0.8600 |
C16—H13 | 0.9300 | N4—N5 | 1.393 (2) |
C17—N4 | 1.291 (2) | N4—Pd1 | 2.0333 (16) |
C17—C18 | 1.432 (3) | N6—H28 | 0.8600 |
C17—H14 | 0.9300 | Pd1—S2 | 2.2836 (9) |
C18—C19 | 1.331 (3) | Pd1—S1 | 2.3016 (9) |
N1—C1—C2 | 126.30 (17) | C25—C20—C19 | 119.0 (2) |
N1—C1—H1 | 116.8 | C22—C21—C20 | 120.5 (2) |
C2—C1—H1 | 116.8 | C22—C21—H17 | 119.7 |
C3—C2—C1 | 121.49 (18) | C20—C21—H17 | 119.7 |
C3—C2—H2 | 119.3 | C23—C22—C21 | 120.9 (3) |
C1—C2—H2 | 119.3 | C23—C22—H18 | 119.6 |
C2—C3—C4 | 125.73 (19) | C21—C22—H18 | 119.6 |
C2—C3—H3 | 117.1 | C22—C23—C24 | 119.6 (2) |
C4—C3—H3 | 117.1 | C22—C23—H19 | 120.2 |
C5—C4—C9 | 118.0 (2) | C24—C23—H19 | 120.2 |
C5—C4—C3 | 122.27 (19) | C23—C24—C25 | 120.3 (2) |
C9—C4—C3 | 119.7 (2) | C23—C24—H20 | 119.8 |
C6—C5—C4 | 120.0 (2) | C25—C24—H20 | 119.8 |
C6—C5—H4 | 120.0 | C24—C25—C20 | 120.8 (3) |
C4—C5—H4 | 120.0 | C24—C25—H21 | 119.6 |
C7—C6—C5 | 120.8 (3) | C20—C25—H21 | 119.6 |
C7—C6—H5 | 119.6 | N5—C26—N6 | 119.74 (17) |
C5—C6—H5 | 119.6 | N5—C26—S2 | 125.25 (14) |
C8—C7—C6 | 119.9 (2) | N6—C26—S2 | 115.00 (13) |
C8—C7—H6 | 120.1 | C28—C27—C32 | 119.5 (2) |
C6—C7—H6 | 120.1 | C28—C27—N6 | 116.4 (2) |
C7—C8—C9 | 120.2 (3) | C32—C27—N6 | 123.9 (2) |
C7—C8—H7 | 119.9 | C27—C28—C29 | 120.3 (3) |
C9—C8—H7 | 119.9 | C27—C28—H22 | 119.9 |
C8—C9—C4 | 121.0 (3) | C29—C28—H22 | 119.9 |
C8—C9—H8 | 119.5 | C30—C29—C28 | 120.6 (3) |
C4—C9—H8 | 119.5 | C30—C29—H23 | 119.7 |
N2—C10—N3 | 120.03 (17) | C28—C29—H23 | 119.7 |
N2—C10—S1 | 124.91 (14) | C29—C30—C31 | 119.7 (2) |
N3—C10—S1 | 115.06 (13) | C29—C30—H24 | 120.2 |
C16—C11—C12 | 118.73 (18) | C31—C30—H24 | 120.2 |
C16—C11—N3 | 124.58 (18) | C30—C31—C32 | 120.9 (3) |
C12—C11—N3 | 116.68 (17) | C30—C31—H25 | 119.6 |
C13—C12—C11 | 120.6 (2) | C32—C31—H25 | 119.6 |
C13—C12—H9 | 119.7 | C31—C32—C27 | 119.0 (2) |
C11—C12—H9 | 119.7 | C31—C32—H26 | 120.5 |
C14—C13—C12 | 120.7 (2) | C27—C32—H26 | 120.5 |
C14—C13—H10 | 119.7 | C1—N1—N2 | 113.95 (15) |
C12—C13—H10 | 119.7 | C1—N1—Pd1 | 124.60 (13) |
C13—C14—C15 | 118.7 (2) | N2—N1—Pd1 | 121.45 (11) |
C13—C14—H11 | 120.7 | C10—N2—N1 | 114.18 (15) |
C15—C14—H11 | 120.7 | C10—N3—C11 | 129.63 (16) |
C14—C15—C16 | 121.6 (2) | C10—N3—H27 | 115.2 |
C14—C15—H12 | 119.2 | C11—N3—H27 | 115.2 |
C16—C15—H12 | 119.2 | C17—N4—N5 | 113.40 (15) |
C15—C16—C11 | 119.6 (2) | C17—N4—Pd1 | 125.56 (13) |
C15—C16—H13 | 120.2 | N5—N4—Pd1 | 121.01 (11) |
C11—C16—H13 | 120.2 | C26—N5—N4 | 114.13 (15) |
N4—C17—C18 | 126.43 (17) | C26—N6—C27 | 129.03 (17) |
N4—C17—H14 | 116.8 | C26—N6—H28 | 115.5 |
C18—C17—H14 | 116.8 | C27—N6—H28 | 115.5 |
C19—C18—C17 | 122.63 (19) | N1—Pd1—N4 | 178.31 (6) |
C19—C18—H15 | 118.7 | N1—Pd1—S2 | 95.66 (4) |
C17—C18—H15 | 118.7 | N4—Pd1—S2 | 82.94 (4) |
C18—C19—C20 | 126.8 (2) | N1—Pd1—S1 | 82.92 (4) |
C18—C19—H16 | 116.6 | N4—Pd1—S1 | 98.45 (4) |
C20—C19—H16 | 116.6 | S2—Pd1—S1 | 177.57 (2) |
C21—C20—C25 | 117.9 (2) | C10—S1—Pd1 | 95.74 (6) |
C21—C20—C19 | 123.10 (18) | C26—S2—Pd1 | 96.65 (6) |
N1—C1—C2—C3 | 172.9 (2) | C32—C27—C28—C29 | 1.5 (4) |
C1—C2—C3—C4 | −177.50 (19) | N6—C27—C28—C29 | 177.0 (3) |
C2—C3—C4—C5 | −17.8 (3) | C27—C28—C29—C30 | −1.1 (5) |
C2—C3—C4—C9 | 159.6 (2) | C28—C29—C30—C31 | 0.0 (5) |
C9—C4—C5—C6 | −0.8 (3) | C29—C30—C31—C32 | 0.6 (5) |
C3—C4—C5—C6 | 176.7 (2) | C30—C31—C32—C27 | −0.1 (4) |
C4—C5—C6—C7 | −1.2 (4) | C28—C27—C32—C31 | −0.9 (4) |
C5—C6—C7—C8 | 2.0 (4) | N6—C27—C32—C31 | −176.0 (2) |
C6—C7—C8—C9 | −0.8 (4) | C2—C1—N1—N2 | −0.7 (3) |
C7—C8—C9—C4 | −1.3 (4) | C2—C1—N1—Pd1 | 178.74 (16) |
C5—C4—C9—C8 | 2.0 (4) | N3—C10—N2—N1 | 179.95 (17) |
C3—C4—C9—C8 | −175.5 (2) | S1—C10—N2—N1 | 0.6 (3) |
C16—C11—C12—C13 | 0.8 (3) | C1—N1—N2—C10 | −173.45 (18) |
N3—C11—C12—C13 | −179.92 (19) | Pd1—N1—N2—C10 | 7.1 (2) |
C11—C12—C13—C14 | −0.3 (3) | N2—C10—N3—C11 | 4.6 (3) |
C12—C13—C14—C15 | −0.3 (4) | S1—C10—N3—C11 | −175.92 (16) |
C13—C14—C15—C16 | 0.4 (4) | C16—C11—N3—C10 | −18.5 (3) |
C14—C15—C16—C11 | 0.2 (4) | C12—C11—N3—C10 | 162.2 (2) |
C12—C11—C16—C15 | −0.7 (3) | C18—C17—N4—N5 | −2.1 (3) |
N3—C11—C16—C15 | −180.0 (2) | C18—C17—N4—Pd1 | 176.05 (16) |
N4—C17—C18—C19 | −174.5 (2) | N6—C26—N5—N4 | −179.31 (18) |
C17—C18—C19—C20 | 177.5 (2) | S2—C26—N5—N4 | −0.4 (3) |
C18—C19—C20—C21 | 13.0 (4) | C17—N4—N5—C26 | 177.55 (18) |
C18—C19—C20—C25 | −166.5 (2) | Pd1—N4—N5—C26 | −0.7 (2) |
C25—C20—C21—C22 | 0.5 (3) | N5—C26—N6—C27 | −6.0 (4) |
C19—C20—C21—C22 | −178.9 (2) | S2—C26—N6—C27 | 175.02 (18) |
C20—C21—C22—C23 | 0.3 (4) | C28—C27—N6—C26 | 160.2 (2) |
C21—C22—C23—C24 | −0.2 (4) | C32—C27—N6—C26 | −24.6 (4) |
C22—C23—C24—C25 | −0.8 (4) | N2—C10—S1—Pd1 | −6.03 (18) |
C23—C24—C25—C20 | 1.7 (4) | N3—C10—S1—Pd1 | 174.54 (14) |
C21—C20—C25—C24 | −1.5 (4) | N5—C26—S2—Pd1 | 1.1 (2) |
C19—C20—C25—C24 | 178.0 (2) | N6—C26—S2—Pd1 | 179.99 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···S2 | 0.93 | 2.60 | 3.230 (2) | 126 |
C16—H13···N2 | 0.93 | 2.32 | 2.887 (3) | 119 |
C17—H14···S1 | 0.93 | 2.72 | 3.355 (2) | 126 |
C32—H26···N5 | 0.93 | 2.39 | 2.911 (3) | 115 |
N3—H27···S2i | 0.86 | 2.63 | 3.4805 (18) | 171 |
N6—H28···S1ii | 0.86 | 2.84 | 3.6554 (19) | 159 |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) x, −y+1/2, z−1/2. |
N—N | N—C | C—S | |
C16H15N3Sa,c | 1.369 (2) | 1.354 (2) | 1.6704 (19) |
Ni(C16H14N3S)2b,c | 1.405 (5) | 1.301 (6) | 1.730 (5) |
Pd(C16H14N3S)2b,d | 1.390 (2) | 1.293 (2) | 1.7520 (19) |
1.393 (2) | 1.291 (2) | 1.7328 (19) |
Notes: (a) Neutral, non-coordinated form of the cinnamaldehyde 4-phenylthiosemicarbazone; (b) anionic, coordinated form of the cinnamaldehyde 4-phenylthiosemicarbazone; (c) Song et al. (2014); (d) this work. |
Acknowledgements
APLM thanks CAPES for the award of a PhD scholarship. The authors thank the Department of Chemistry of the Federal University of Santa Maria/Brazil for the access to the X-ray diffraction facility.
Funding information
Funding for this research was provided by: Coordenação de Aperfeiçoamento de Pessoal de Nível Superior – Brazil (CAPES), Finance code 001.
References
Allen, F. H., Johnson, O., Shields, G. P., Smith, B. R. & Towler, M. (2004). J. Appl. Cryst. 37, 335–338. Web of Science CrossRef CAS IUCr Journals Google Scholar
Bondi, A. (1964). J. Phys. Chem. 68, 441–451. CrossRef CAS Web of Science Google Scholar
Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2015). APEX3 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Chemical Abstracts Service (2023). Columbus, Ohio, USA (accessed via SciFinder on September 1, 2023). Google Scholar
Farias, R. L., Polez, A. M. R., Silva, A. D. E. S., Zanetti, R. D., Moreira, M. B., Batista, V. S., Reis, B. L., Nascimento-Júnior, N. M., Rocha, F. V., Lima, M. A., Oliveira, A. B., Ellena, J., Scarim, C. B., Zambom, C. R., Brito, L. D., Garrido, S. S., Melo, A. P. L., Bresolin, L., Tirloni, B., Pereira, J. C. M. & Netto, A. V. G. (2021). Mater. Sci. Eng. C, 121, 111815, 1–12. Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Freund, M. & Schander, A. (1902). Ber. Dtsch. Chem. Ges. 35, 2602–2606. CrossRef CAS Google Scholar
Hirshfeld, H. L. (1977). Theor. Chim. Acta, 44, 129–138. CrossRef CAS Web of Science Google Scholar
Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3–10. Web of Science CSD CrossRef ICSD CAS IUCr Journals Google Scholar
Lobana, T. S., Sharma, R., Bawa, G. & Khanna, S. (2009). Coord. Chem. Rev. 253, 977–1055. Web of Science CrossRef CAS Google Scholar
Mostafa, H. A. (2000). Electrochim. Acta, 18, 45–53. CrossRef CAS Google Scholar
Nyawadea, E. A., Sibuyi, N. R. S., Meyer, M., Lalancette, R. & Onani, M. O. (2021). Inorg. Chim. Acta, 515, 120036, 1–10. Google Scholar
Oliveira, A. B. de, Feitosa, B. R. S., Näther, C. & Jess, I. (2014). Acta Cryst. E70, 101–103. CSD CrossRef IUCr Journals Google Scholar
Palve, A. M. & Garje, S. S. (2011). J. Cryst. Growth, 326, 157–162. Web of Science CrossRef CAS Google Scholar
Pawar, A. S. & Garje, S. S. (2015). Bull. Mater. Sci. 38, 1843–1850. Web of Science CrossRef CAS Google Scholar
Pawar, A. S., Masikane, S. C., Mlowe, S., Garje, S. S. & Revaprasadu, N. (2016). Eur. J. Inorg. Chem. pp. 366–372. Web of Science CrossRef Google Scholar
Rocha, F. V., Farias, R. L., Lima, M. A., Batista, V. S., Nascimento-Júnior, N. M., Garrido, S. S., Leopoldino, A. M., Goto, R. N., Oliveira, A. B., Beck, J., Landvogt, C., Mauro, A. E. & Netto, A. V. G. (2019). J. Inorg. Biochem. 199, 110725, 1–9. Google Scholar
Rowland, R. S. & Taylor, R. (1996). J. Phys. Chem. 100, 7384–7391. CrossRef CAS Web of Science Google Scholar
Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Song, J., Zhu, F., Wang, H. & Zhao, P. (2014). Spectrochim. Acta A Mol. Biomol. Spectrosc. 129, 227–234. Web of Science CSD CrossRef CAS PubMed Google Scholar
Tišler, M. (1956). Z. Anal. Chem. 149, 164–172. Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Wolff, S. K., Grimwood, D. J., McKinnon, J. J., Turner, M. J., Jayatilaka, D. & Spackman, M. A. (2012). Crystal Explorer 3.1. University of Western Australia, Australia. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.