research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890

Crystal structure and characterization of a new chain-like polyrotaxane zinc(II) coordination polymer with mixed pyridine-2,6-di­carboxyl­ate and 1,4-bis­­(1H-imidazol-1-ylmeth­yl)benzene ligands

crossmark logo

aDepartment of Chemistry, Faculty of Science and Technology, Thammasat University, Pathum Thani 12121, Thailand, and bThammasat University Research Unit in Multifunctional Crystalline Materials and Applications (TU-MCMA), Faculty of Science and Technology, Thammasat University, Pathum Thani 12121, Thailand
*Correspondence e-mail: [email protected]

Edited by M. Weil, Vienna University of Technology, Austria (Received 7 April 2025; accepted 22 May 2025; online 30 May 2025)

A new chain-like polyrotaxane ZnII coordination polymer, catena-poly[[[[(pyridine-2,6-di­carboxyl­ato-κ3O,N,O′)zinc(II)]-μ-1,4-bis­(1H-imidazol-1-ylmeth­yl)benzene-κ2N1:N1′] hemi{bis­[μ-1,4-bis­(1H-imidazol-1-ylmeth­yl)benzene-κ2N1:N1′]bis­[(pyridine-2,6-di­carboxyl­ato-κ3O,N,O′)zinc(II)]}] nona­hydrate], {[Zn(C7H3NO4)(C14H14N4)][Zn2(C7H3NO4)2(C14H14N4)2]0.5·9H2O}n or {[Zn2(2,6-PDC)2(bix)2]·9H2O}n [where 2,6-PDC = pyridine-2,6-di­carboxyl­ate, C7H3NO4, and bix = 1,4-bis­(1H-imidazol-1-ylmeth­yl)benzene, C14H14N4], was synthesized and characterized. The mol­ecular structure comprises two ZnII units. Both ZnII ions are fivefold coordinated, with the coordination sphere inter­mediate between trigonal-bipyramidal and square-pyramidal, as defined by two bix ligands and one 2,6-PDC tridentate chelating ligand. For one of the units, two ZnII ions are bridged by gauche-bix ligands, providing a dinuclear [Zn2(2,6-PDC)2(bix)2] macrocycle. The other unit is built by trans-bix bridging ligands, leading to a zigzag chain-like structure. Inter­estingly, these two entities are inter­weaved, leading to a polyrotaxane structure extending parallel to [101]. The crystal structure is consolidated by hydrogen-bonding, ππ and C—H⋯π inter­molecular inter­actions.

1. Chemical context

Coordination polymers (CPs) are inorganic–organic materials composed of metal ions linked by organic ligands through coordinate-covalent bonds into structural units with different periodicity (Robin & Fromm, 2006[Robin, A. Y. & Fromm, K. M. (2006). Coord. Chem. Rev. 250, 2127-2157.]; Batten et al., 2012[Batten, S. R., Champness, N. R., Chen, X.-M., Garcia-Martinez, J., Kitagawa, S., Öhrström, L., O'Keeffe, M., Suh, M. P. & Reedijk, J. (2012). CrystEngComm 14, 3001-3004.]). These materials possess potential for applications in various fields, such as gas storage, separation, luminescence, magnetism, catalysis, and drug delivery (Fromm et al., 2009[Fromm, K. M., Batten, V. S. S., Neville, S. M. & Turner, D. R. (2009). Angew. Chem. 121, 4986-4987.]; Batten et al., 2016[Batten, S. R., Chen, B. & Vittal, J. J. (2016). ChemPlusChem 81, 669-670.]; Kothawade & Shende, 2024[Kothawade, S. & Shende, P. (2024). Coord. Chem. Rev. 510, 215851.]; Dragutan et al., 2024[Dragutan, I., Ding, F., Sun, Y. & Dragutan, V. (2024). Crystals 14, 301.]). Among these materials, CPs of ZnII are very attractive due to their varieties of structural arrangements and also their properties. The ZnII atom has an [Ar]3d10 closed-shell electron configuration, and corresponding structure–property relationships are studied for applications like luminescence (Parmar et al., 2020[Parmar, B., Bisht, K. K., Rachuri, Y. & Suresh, E. (2020). Inorg. Chem. Front. 7, 1082-1107.]; Diana et al., 2021[Diana, R., Caruso, U. & Panunzi, B. (2021). Polymers 13, 3712.]; Li et al., 2023[Li, Q., Ghosh, M. K., Wang, J., Lu, L., Sakiyama, H., Ghorai, T. K., Kushwaha, A., Prakash, O., Afzal, M. & Alarifi, A. (2023). J. Mol. Struct. 1284, 135430.]). To create novel ZnII CPs with inter­esting structures and properties, mixed O- and N-donor ligands can be utilized (Robin et al., 2006[Robin, A. Y. & Fromm, K. M. (2006). Coord. Chem. Rev. 250, 2127-2157.]; Du et al., 2013[Du, M., Li, C.-P., Liu, C.-S. & Fang, S.-M. (2013). Coord. Chem. Rev. 257, 1282-1305.]). Bridging O-donor ligands, in particular heterocyclic aromatic di­carb­oxy­lic acid ligands such as pyridinedi­carboxyl­ate (PDC), can provide a variety of coordination modes with central metal ions, yielding a variety of framework periodicities and topologies (Gao et al., 2006[Gao, H.-L., Yi, L., Zhao, B., Zhao, X.-Q., Cheng, P., Liao, D.-Z. & Yan, S.-P. (2006). Inorg. Chem. 45, 5980-5988.]). Furthermore, the selection of ligands with carboxyl­ate groups and aromatic rings can promote hydrogen-bonding and ππ inter­molecular inter­actions, respectively, thus contributing to the stabilization of the crystal structure. For N-donor bridging ligands, the incorporation of flexible di­imidazole ligands such as 1,4-bis­(imidazol-1-ylmeth­yl)benzene (bix), which consists of two imidazole rings linked by a methyl­ene group to a benzene ring, can result in two possible coordination conformations with the central metal ion, gauche and trans, and consequently leads to a variety of extended CP periodicities and topologies (Tripuramallu et al., 2012[Tripuramallu, B. K., Manna, P., Nagaprasad Reddy, S. & Das, S. K. (2012). Cryst. Growth Des. 12, 777-792.]; Adarsh et al., 2016[Adarsh, N. N., Novio, F. & Ruiz-Molina, D. (2016). Dalton Trans. 45, 11233-11255.]; Li et al., 2018[Li, N., Feng, R., Zhu, J., Chang, Z. & Bu, X.-H. (2018). Coord. Chem. Rev. 375, 558-586.]). ZnII CPs containing mixed PDC and trans-bix derivatives have been reported, for instance in the form of a grid structure [Zn(2,3-PDCO)(bix)·H2O]n (2,3-PDCOH2 = pyridine-2,3-di­carb­oxy­lic acid N-oxide) (Wen et al., 2009[Wen, L.-L., Lu, Z.-D., Ren, X.-M., Duan, C.-Y., Meng, Q.-J. & Gao, S. (2009). Cryst. Growth Des. 9, 227-238.]), a corrugated network [Zn(2,6-PDC)(bmix)0.5]n [2,6-PDCH2 = pyridine-2,6-di­carb­oxy­lic acid and bmix = 1,4-bis­(2-methyl­imidazole-1-ylmeth­yl)benzene; Liu et al., 2011[Liu, T. F., Wu, W. F., Zhang, W. G. & Cui, G. H. (2011). Z. Anorg. Allg. Chem. 637, 148-153.]], and a zigzag chain [Zn(3,4-PDC)(bix)]n (3,4-PDCH2 = pyridine-3,4-di­carb­oxy­lic acid) (Voda et al., 2017[Voda, I., Makhloufi, G., Lozan, V., Shova, S., Heering, C. & Janiak, C. (2017). Inorg. Chim. Acta 455, 118-131.]). Notably, the flexibility of the bix ligand with both gauche- and trans-conformations can facilitate the formation of inter­esting ZnII CP topologies, for example a mono-periodic polyrotaxane, {[Zn(Or)(bix)(H2O)]2·6H2O}n (OrK = potassium orotate) (Somnath et al., 2022[Somnath, S., Ahmad, M. & Ahmad Siddiqui, K. (2022). Polyhedron 215, 115693.]).

[Scheme 1]

The current report is part of a study aimed at the synthesis of new ZnII CPs using pyridine-2,6-di­carboxyl­ate (2,6-PDC) and 1,4-bis­(imidazol-1-ylmeth­yl)benzene (bix) by investigation of various synthetic conditions, including compositions, solvents, and methods, leading to a new chain-like polyrotaxane ZnII CP, {[Zn2(2,6-PDC)2(bix)2]·9H2O}n.

2. Structural commentary

The asymmetric unit of the title compound consists of two ZnII atoms, one bix and two half-bix ligands, which sit across a twofold rotation axis, two 2,6-PDC ligands and nine non-coordinating water mol­ecules (Fig. 1[link]). Selected bond lengths and angles are listed in Table 1[link]. The coordination number of both the Zn1 and Zn2 atoms is 5 (Fig. 2[link]). The environment of Zn1 is defined by two N-donor atoms from two bix ligands and one N and two O atoms from a terminal 2,6-PDC tridentate chelating ligand. The Zn1—N distances range from 1.984 (3) to 2.014 (3) Å, and the Zn1—O distances are 2.151 (3) and 2.208 (3) Å. The structural parameter τ5 of Zn1 is 0.46 (Fig. S1 in the electronic supporting information, ESI), and thus the coordination environment is inter­mediate between a square pyramid and a trigonal bipyramid (τ = 0 for an ideal square pyramid and τ = 1 for an ideal trigonal bipyramid; Addison et al., 1984[Addison, A. W., Rao, N. T., Reedijk, J., van Rijn, J. & Verschoor, G. C. (1984). J. Chem. Soc. Dalton Trans. pp. 1349-1356.]). Two Zn1 ions are linked by two gauche-bix bridging ligands with μ-κ2N:N′-coordination mode, forming a dinuclear [Zn2(2,6-PDC)2(bix)2] macrocyclic unit (Fig. 3[link]a). The Zn1⋯Zn1i distance across the dinuclear unit is 11.262 (1) Å [symmetry code: (i) −x + Mathematical equation, −y − Mathematical equation, −z + 1). The environment around Zn2 is defined by two N-donor atoms from two bix ligands and one N- and two O-donor atoms from a terminal 2,6-PDC tridentate chelating ligand. The Zn2—N distances are in the range 1.984 (3) to 2.010 (3) Å and the Zn2—O distances are 2.172 (3) and 2.209 (3) Å. The value of τ5 is 0.42 (Fig. S1 in the ESI), indicating an inter­mediate five-coordinate environment similar to the degree of distortion found around Zn1. The Zn2 atoms are linked by the trans-bix bridging ligand with μ-κ2N:N′-coordination modes, leading to a zigzag chain-like structure extending parallel to [101] (Fig. 3[link]b and Fig. S1 in the ESI). The Zn2⋯Zn2ii and Zn2⋯Zn2iii distances are 15.099 (3) and 12.728 (2) Å, respectively [symmetry codes: (ii) −x + Mathematical equation, −y + Mathematical equation, −z + 2; (iii) = −x, y, −z + Mathematical equation]. Inter­estingly, the zigzag chains involving Zn2 represent the threading into the dinuclear [Zn2(2,6-PDC)2(bix)2] macrocyclic units, providing an extended mono-periodic polyrotaxane structure parallel to [101], as shown in Fig. 4[link] and Fig. S2 in the ESI.

Table 1
Selected geometric parameters (Å, °)

Zn1—O1 2.208 (3) Zn2—O5 2.172 (3)
Zn1—O3 2.151 (3) Zn2—O7 2.209 (3)
Zn1—N1 2.014 (3) Zn2—N6 2.010 (3)
Zn1—N2 1.984 (3) Zn2—N7 1.984 (3)
Zn1—N5i 1.990 (3) Zn2—N9 1.992 (3)
       
O3—Zn1—O1 152.50 (13) O5—Zn2—O7 153.06 (10)
N1—Zn1—O1 75.70 (13) N6—Zn2—O5 76.93 (11)
N1—Zn1—O3 77.05 (11) N6—Zn2—O7 76.35 (11)
N2—Zn1—O1 98.27 (14) N7—Zn2—O5 101.49 (12)
N2—Zn1—O3 94.35 (13) N7—Zn2—O7 93.77 (11)
N2—Zn1—N1 125.19 (12) N7—Zn2—N6 117.44 (11)
N2—Zn1—N5i 114.81 (12) N7—Zn2—N9 114.82 (12)
N5i—Zn1—O1 97.97 (12) N9—Zn2—O5 96.62 (12)
N5i—Zn1—O3 98.73 (11) N9—Zn2—O7 96.92 (11)
N5i—Zn1—N1 119.99 (12) N9—Zn2—N6 127.60 (11)
Symmetry code: (i) Mathematical equation.
[Figure 1]
Figure 1
The asymmetric unit of the title compound. Zn1 is located in the center of inversion symmetry positions and two half-bix ligands sit across a twofold rotation axis. Displacement ellipsoids are drawn at the 30% probability level.
[Figure 2]
Figure 2
The coordination environment of the central ZnII atoms in the title compound.
[Figure 3]
Figure 3
Two independent units: (a) the dinuclear Zn1 macrocyclic unit and (b) the zigzag coordination polymeric chain-like structure of the Zn2 unit of the title compound.
[Figure 4]
Figure 4
(a) Top, (b) side views and (c) schematic representation of the mono-periodic polyrotaxane structure of the title compound. The 2,6-DPC, hydrogen atoms and non-coordinating water mol­ecules are omitted for clarity.

The bix ligands, crucial for the polyrotaxane structure of the title compound, exhibit three distinct conformations, as shown in Fig. 5[link] and Figs. S2–S4 in the ESI. Geometrical parameters characterizing these conformations are summarized in Table S1 in the ESI. In the bix ligand within the Zn1 unit, the imidazole rings {N2N3;N4N5} display a synperiplanar conformation, characterized by a torsion angle (τ3) of 7.90° (through N3—C11—C18—N4). The imidazole rings are twisted with respect to the phenyl ring with torsion angles (τ1) of 67.4 (6)° (through C9—N3—C11—C12) and (τ2) of −83.8 (5)° (through C21—N4—C18—C15), indicating a gauche conformation. The two independent bix ligands in the Zn2 unit, related by twofold rotation symmetry, show different conformations. For the {N7N8;N8′N7′} rings, an anti­periplanar twist is observed, with a torsion angle (τ3) of 180.00° (through N8—C39—C39′—N8′). The twist relative to the phenyl ring is defined by torsion angles (τ1) and (τ2) of −48.90 and 48.90°, respectively. For the {N9N10;N10′N9′} rings, the imidazole rings show a near anti­periplanar conformation, with a torsion angle (τ3) of 160.10° (through N10—C32—C32′—N10′), and the twist relative to the phenyl ring defined by a torsion angles (τ1 and τ2) of 78.7 (5)°. These parameters correspond to a trans-conformation for the Zn2 unit. Consequently, the difference of these bix conformations also affect the metal–metal separation (Tripuramallu et al., 2012[Tripuramallu, B. K., Manna, P., Nagaprasad Reddy, S. & Das, S. K. (2012). Cryst. Growth Des. 12, 777-792.]) in the title compound.

[Figure 5]
Figure 5
Views of (a) conformations, (b) overlay and (c) Newmann projection representation of three different bix ligands in the title compound. [Symmetry codes: (i) −x + Mathematical equation, −y − Mathematical equation, −z + 1; (ii) −x + Mathematical equation, −y + Mathematical equation, −z + 2; (iii) = −x, y, −z + Mathematical equation.]

3. Supra­molecular features

The crystal structure of the title compound is consolidated by the presence of a variety of inter­molecular inter­actions, namely hydrogen-bonding, ππ and C —H⋯π inter­actions, as detailed in Tables 2[link] and 3[link]. It is noted that the hydrogen atoms bonded to the oxygen atoms of non-coordinating water mol­ecules were not assigned in the structure, but the O⋯O separations [O11⋯O12 = 3.096 (14) Å, O12⋯O13 = 3.214 (16) Å, O13⋯O14 = 2.882 (9) Å, O10⋯O17 = 3.120 (16) Å, O17⋯O18 = 2.862 (14) Å, O16⋯O18 = 3.206 (19) Å, O9⋯O18 = 2.876 (9) Å] suggest the presence of medium-to-weak hydrogen-bonding inter­actions between them. Non-classical inter­molecular hydrogen-bonding C—H⋯O inter­actions are found between (i) the C—H group of the imidazole ring on the bix ligands and the oxygen atoms of the carboxyl­ate group of the 2,6-PDC ligands (Fig. S5 in the ESI), and (ii) between the C—H groups of both the imidazole ring and the –CH2 group on the bix ligands and the non-coordinating water mol­ecules (Fig. S6 in the ESI). The ππ inter­actions are observed between the pyridine rings of 2,6-PDC ligands in adjacent zigzag chains with a centroid-to-centroid distance Cg5⋯Cg5i of 3.646 (2) Å and a slippage of 1.434 Å [Cg5 is the centroid of the N6/C23–C27 ring; symmetry code: (i) −x + Mathematical equation, −y + Mathematical equation, −z + 1]. Additionally, ππ inter­actions are found between the pyridine rings of 2,6-PDC ligands in the adjacent zigzag chains and the dinuclear units with a centroid-to-centroid distance Cg5⋯Cg12i of 3.729 (3) Å and a slippage of 0.782 and 0.686 Å (Cg5 and Cg12 are the centroids of the N6/C23–C27 and N1/C2–C6 rings), as shown in Fig. S7 in the ESI. Furthermore, C—H⋯π inter­actions are observed between the C—H groups of 2,6-PDC in the dinuclear units and the imidazole ring of the bix ligand in the zigzag chains, C5—H5⋯Cg3v and C26—H26⋯Cg10v [symmetry code: (v) −x + Mathematical equation, −y + Mathematical equation, −z + 1]. Additional inter­actions occur between a C—H group of the benzene ring of a bix ligand in the zigzag chains and the imidazole ring of the bix ligand in the dinuclear units, namely C42— H42⋯Cg11iv [where Cg3, Cg10 and Cg11 are the centroids of the five-membered N7/C36–C38, N2/C8–C10 and N4/C19–C21 rings, respectively; symmetry code: (iv) x, −y, z + Mathematical equation], as shown in Fig. S8 in the ESI. The crystal packing of the title compound is shown in Fig. 6[link] and Fig. S9 in the ESI.

Table 2
Hydrogen-bond geometry (Å, °)

Cg3, Cg10 and Cg11 are the centroids of the N7/C36/C37/N8/C38/N2/C8/C9/N3/C10 and N4/C20/C21/N5/C19 rings, respectively.

D—H⋯A D—H H⋯A DA D—H⋯A
C18—H18A⋯O19ii 0.97 2.45 3.421 (7) 174
C19—H19⋯O9i 0.93 2.44 3.328 (5) 160
C21—H21⋯O15iii 0.93 2.50 3.394 (10) 162
C21—H21⋯O16iii 0.93 2.41 3.278 (18) 154
C29—H29⋯O19 0.93 2.47 3.213 (6) 137
C30—H30⋯O4iv 0.93 2.53 3.149 (5) 124
C38—H38⋯O4v 0.93 2.58 2.988 (5) 107
C5—H5⋯Cg3v 0.93 2.81 3.624 (5) 146
C26—H26⋯Cg10v 0.93 2.61 3.443 (4) 150
C42—H42⋯Cg11iv 0.93 2.93 3.818 (5) 161
Symmetry codes: (i) Mathematical equation; (ii) Mathematical equation; (iii) Mathematical equation; (iv) Mathematical equation; (v) Mathematical equation.

Table 3
Analysis of short ring inter­actions (Å)

Cg(I) and Cg(J) are the centroids of rings I and J; CgI_Perp is the perpendicular distance of Cg(I) on ring J, and slippage is the distance between Cg(I) and the perpendicular projection of Cg(J) on ring I. Cg5, and Cg12 are the centroids of the N6/C23–C27 and N1/C2–C6 rings, respectively.

Cg(I) Cg(J) Symmetry_Cg(J) Cg(I)⋯Cg(J) CgI_Perp CgJ_Perp Slippage
Cg5 Cg5 -x + Mathematical equation, −y + Mathematical equation, −z + 1 3.646 (2) 3.3521 (15) 3.3521 (15) 1.434
Cg5 Cg12 -x + Mathematical equation, −y + Mathematical equation, −z + 1 3.729 (3) 3.6648 (15) 3.6455 (19) 0.782
Cg12 Cg5 -x + Mathematical equation, −y + Mathematical equation, −z + 1 3.728 (3) 3.6453 (19) 3.6648 (15) 0.686
[Figure 6]
Figure 6
The crystal packing of the title compound. The water mol­ecules are omitted for clarity.

4. Spectroscopic, powder X-ray diffraction (PXRD) and thermal properties

The FT-IR spectrum of the title compound (Fig. S10 in the ESI) shows a strong broad band centered at 3434 cm−1, assigned to the O—H stretching of water mol­ecules. A band at 3127 cm−1 is assigned to the C—H stretching of aromatic rings for both ligands. The characteristic bands found at 1639 and 1421 cm−1 can be assigned to be the asymmetric and symmetric stretching vibrations of the carboxyl­ate group of the 2,6-PDC ligand. Bands appearing at 1533 and 1097 cm−1 could be assigned to the C=N and C—N stretching, respectively, and the bands in the range of 700–500 cm−1 to C—H bending vibration of bix ligands (Tripuramallu et al., 2012[Tripuramallu, B. K., Manna, P., Nagaprasad Reddy, S. & Das, S. K. (2012). Cryst. Growth Des. 12, 777-792.]; Somnath et al., 2022[Somnath, S., Ahmad, M. & Ahmad Siddiqui, K. (2022). Polyhedron 215, 115693.]).

The PXRD patterns of the title compound are shown in Fig. S11 in the ESI, revealing a good match between the calculated pattern from single-crystal data and the experimental data of the as-synthesized compound, indicating that it was synthesized in a phase-pure manner.

To study the thermal stability of the title compound, thermogravimetric analysis (TGA) was performed in the temperature range of 303–1073 K under nitro­gen atmosphere. From the TGA curve shown in Fig. S12 in the ESI, the first degradation step in the range of 303–403 K represents a mass loss of 17.30%, corresponding to the loss of the nine water mol­ecules (calculated 17.45%). Then the resulting compound remained stable up to 573 K. The degradation steps observed in the temperature range of 573–833 K represents a mass loss of 51.59%, indicating the release of two bix and two 2,6-PDC ligands (calculated 50.74%). The remaining residue at high temperature could be assigned to ZnO.

5. Database survey

A search of the Cambridge Structural Database (CSD, version 5.44, last update April 2023; Groom et al., 2016[Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171-179.]) using the ConQuest software (Bruno et al., 2002[Bruno, I. J., Cole, J. C., Edgington, P. R., Kessler, M., Macrae, C. F., McCabe, P., Pearson, J. & Taylor, R. (2002). Acta Cryst. B58, 389-397.]) for structures of mixed 2,6-PDC and bix ligand-based ZnII polyrotaxane CPs yielded no hits. To the best of our knowledge, only one relevant ZnII CP containing mixed di­carboxyl­ate, orotate (Or), and bix ligands, {[Zn(Or)(bix)(H2O)]2·6H2O}n (PEFHAN; Somnath et al., 2022[Somnath, S., Ahmad, M. & Ahmad Siddiqui, K. (2022). Polyhedron 215, 115693.]), exhibiting a chain-like polyrotaxane structure, has been reported. Although the crystal structure of this compound exhibits both gauche and trans conformations of the bix ligand (like in the title compound), differences in moieties such as the orotate ligand and the number of water mol­ecules, as well as variations in the degree of bix mol­ecule flexibility and supra­molecular inter­actions, make a direct comparison difficult.

6. Synthesis and crystallization

All chemicals purchased were reagent-grade and used without further purification. The bix ligand was prepared according to a literature procedure (Hoskins et al., 1997[Hoskins, B. F., Robson, R. & Slizys, D. A. (1997). J. Am. Chem. Soc. 119, 2952-2953.]). A dimethyl formamide solution (10 ml) of bix·2H2O (0.2383 g, 1 mmol) was added to an aqueous solution (10 ml) of Zn(NO3)2·6H2O (0.2975 g, 1 mmol) and stirred for 10 min at 333 K. Subsequently, a mixture of an aqueous solution (10 ml) of 2,6-PDCH2 (0.1671 g, 1 mmol) and NaOH (0.0845 g, 2 mmol) was added, and the resulting mixture was stirred for 20 min, giving a colorless precipitate. Then, a mixed solution of DMF (10 ml) and deionized water (10 ml) was slowly added, and the mixture was stirred for 40 min. The solution became clear and colorless. This solution was filtered and allowed to slowly evaporate at room temperature. Colorless, block-shaped crystals of the title compound were obtained within one week (17.6% yield, based on the ZnII salt).

7. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 4[link]. Hydrogen atoms bonded to carbon atoms were placed at calculation positions and refined isotropically using a riding model with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C) for aromatic hydrogen atoms, and C—H = 0.97 Å, Uiso(H) = 1.2Ueq(C) for methyl­ene hydrogen atoms. The hydrogen atoms bonded to the oxygen atoms of the non-coordinating water mol­ecules (O9–O19) could not be located reliably and thus were not included in the model, but were taken into account in the overall formula. Some of non-coordinating water mol­ecules were refined with site occupancies of 0.75 for O10 and O12 and 0.5 for O17, while other water mol­ecules (O15 and O16) were found to be disordered with site occupancies of 0.5.

Table 4
Experimental details

Crystal data
Chemical formula [Zn(C7H3NO4)(C14H14N4)][Zn2(C7H3NO4)2(C14H14N4)2]0.5·9H2O
Mr 1099.70
Crystal system, space group Monoclinic, C2/c
Temperature (K) 296
a, b, c (Å) 25.577 (4), 18.632 (3), 22.463 (4)
β (°) 94.335 (6)
V3) 10674 (3)
Z 8
Radiation type Mo Kα
μ (mm−1) 0.97
Crystal size (mm) 0.24 × 0.2 × 0.2
 
Data collection
Diffractometer Bruker D8 QUEST CMOS PHOTON II
Absorption correction Multi-scan (SADABS; Krause et al., 2015[Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3-10.])
Tmin, Tmax 0.685, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections 129120, 9915, 8159
Rint 0.058
(sin θ/λ)max−1) 0.606
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.055, 0.185, 1.05
No. of reflections 9915
No. of parameters 658
No. of restraints 18
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 1.20, −0.56
Computer programs: APEX3 and SAINT (Bruker, 2016[Bruker (2016). APEX3 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]), OLEX2.solve (Bourhis et al., 2015[Bourhis, L. J., Dolomanov, O. V., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2015). Acta Cryst. A71, 59-75.]), SHELXL (Sheldrick, 2015[Sheldrick, G. M. (2015). Acta Cryst. C71, 3-8.]), OLEX2 (Dolomanov et al., 2009[Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339-341.]) and publCIF (Westrip, 2010[Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925.]).

Supporting information


Computing details top

catena-Poly[[[[(pyridine-2,6-dicarboxylato-κ3O,N,O')zinc(II)]-µ-1,4-bis(1H-imidazol-1-ylmethyl)benzene-κ2N1:N1'] hemi{bis[µ-1,4-bis(1H-imidazol-1-ylmethyl)benzene-κ2N1:N1']bis[(pyridine-2,6-dicarboxylato-κ3O,N,O')zinc(II)]}] nonahydrate] top
Crystal data top
[Zn(C7H3NO4)(C14H14N4)][Zn2(C7H3NO4)2(C14H14N4)2]0.5·9H2OF(000) = 4416
Mr = 1099.70Dx = 1.369 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 25.577 (4) ÅCell parameters from 9980 reflections
b = 18.632 (3) Åθ = 2.6–25.9°
c = 22.463 (4) ŵ = 0.97 mm1
β = 94.335 (6)°T = 296 K
V = 10674 (3) Å3Block, clear colourless
Z = 80.24 × 0.2 × 0.2 mm
Data collection top
Bruker D8 QUEST CMOS PHOTON II
diffractometer
9915 independent reflections
Radiation source: sealed x-ray tube, Mo8159 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.058
Detector resolution: 7.39 pixels mm-1θmax = 25.5°, θmin = 2.6°
ω and φ scansh = 3030
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
k = 2222
Tmin = 0.685, Tmax = 0.746l = 2727
129120 measured reflections
Refinement top
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H-atom parameters constrained
wR(F2) = 0.185 w = 1/[σ2(Fo2) + (0.1223P)2 + 11.6285P]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
9915 reflectionsΔρmax = 1.20 e Å3
658 parametersΔρmin = 0.56 e Å3
18 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
Zn10.15753 (2)0.00657 (2)0.38691 (2)0.05507 (16)
O10.09238 (14)0.02720 (19)0.43969 (15)0.0806 (9)
O20.03170 (16)0.1129 (2)0.4428 (2)0.1164 (15)
O30.21169 (11)0.01072 (15)0.31956 (12)0.0617 (7)
O40.23136 (13)0.08944 (16)0.24967 (14)0.0762 (8)
N10.13180 (11)0.08573 (16)0.34825 (13)0.0519 (7)
N20.21307 (14)0.01413 (17)0.45320 (14)0.0575 (8)
N30.29250 (14)0.01172 (17)0.49653 (14)0.0590 (8)
N40.41613 (12)0.30010 (16)0.64954 (15)0.0534 (7)
N50.37235 (12)0.40007 (15)0.64217 (12)0.0502 (7)
C10.06868 (18)0.0836 (3)0.4211 (2)0.0782 (13)
C20.08967 (15)0.1181 (2)0.3671 (2)0.0646 (10)
C30.0693 (2)0.1792 (3)0.3373 (3)0.0839 (15)
H30.0397890.2022900.3497630.101*
C40.0940 (2)0.2043 (3)0.2890 (3)0.0919 (16)
H40.0810310.2446020.2684680.110*
C50.1378 (2)0.1700 (2)0.2710 (2)0.0756 (12)
H50.1547090.1867720.2384620.091*
C60.15605 (15)0.11016 (19)0.30231 (16)0.0558 (9)
C70.20415 (15)0.0669 (2)0.28917 (16)0.0565 (9)
C80.21003 (19)0.0091 (2)0.51427 (18)0.0644 (10)
H80.1792650.0077430.5338260.077*
C90.25897 (19)0.0067 (2)0.54066 (18)0.0662 (11)
H90.2681830.0022930.5813480.079*
C100.26350 (17)0.0158 (2)0.44476 (17)0.0581 (9)
H100.2770660.0192530.4076060.070*
C110.35050 (18)0.0073 (2)0.5032 (2)0.0710 (12)
H11A0.3606600.0367980.5240150.085*
H11B0.3637700.0052520.4639430.085*
C120.37511 (16)0.0696 (2)0.53687 (18)0.0604 (9)
C130.3928 (2)0.1296 (3)0.5080 (2)0.0829 (13)
H130.3880630.1328040.4666560.100*
C140.4176 (2)0.1847 (3)0.5403 (3)0.0843 (14)
H140.4297430.2242240.5202100.101*
C150.42455 (16)0.1821 (2)0.6010 (2)0.0620 (10)
C160.4063 (2)0.1235 (2)0.6298 (2)0.0773 (12)
H160.4101620.1213740.6712180.093*
C170.3820 (2)0.0670 (2)0.5978 (2)0.0796 (13)
H170.3704170.0272330.6181070.096*
C180.45194 (16)0.2418 (2)0.6356 (2)0.0744 (12)
H18A0.4793240.2611190.6125800.089*
H18B0.4684610.2227140.6725090.089*
C190.40708 (14)0.35973 (19)0.61840 (16)0.0505 (8)
H190.4233360.3714440.5840380.061*
C200.35866 (16)0.3641 (2)0.69164 (17)0.0583 (9)
H200.3346350.3800780.7177410.070*
C210.38503 (17)0.3025 (2)0.69669 (19)0.0633 (10)
H210.3828140.2679190.7262820.076*
Zn20.23262 (2)0.18410 (2)0.66749 (2)0.04854 (15)
O50.18119 (10)0.27391 (15)0.64324 (13)0.0624 (7)
O60.17376 (13)0.36649 (18)0.57972 (18)0.0891 (10)
O70.30164 (10)0.11551 (14)0.65641 (12)0.0589 (6)
O80.37881 (13)0.1195 (2)0.61729 (18)0.0929 (11)
N60.27084 (11)0.23577 (15)0.60529 (12)0.0458 (6)
N70.25360 (12)0.20574 (16)0.75245 (12)0.0497 (6)
N80.26478 (13)0.26157 (16)0.83817 (12)0.0542 (7)
N90.17862 (11)0.10751 (16)0.65458 (12)0.0479 (6)
N100.10343 (12)0.05191 (17)0.64355 (13)0.0539 (7)
C220.33432 (14)0.1431 (2)0.62393 (18)0.0576 (9)
C230.31678 (13)0.2106 (2)0.59068 (15)0.0510 (8)
C240.34381 (17)0.2462 (2)0.54755 (18)0.0656 (10)
H240.3761330.2293340.5372480.079*
C250.32230 (19)0.3054 (2)0.52109 (19)0.0700 (12)
H250.3398740.3291620.4921670.084*
C260.27363 (17)0.3315 (2)0.53678 (17)0.0621 (10)
H260.2585010.3720570.5186050.075*
C270.24907 (14)0.29458 (19)0.58017 (15)0.0499 (8)
C280.19711 (15)0.3142 (2)0.60235 (18)0.0569 (9)
C290.12779 (14)0.1150 (2)0.64023 (15)0.0514 (8)
H290.1113610.1580470.6293810.062*
C300.18651 (14)0.0363 (2)0.66720 (16)0.0543 (8)
H300.2187910.0153810.6782830.065*
C310.14062 (17)0.0014 (2)0.66114 (19)0.0599 (9)
H310.1350510.0472280.6675540.072*
C320.04643 (15)0.0392 (3)0.63624 (18)0.0688 (11)
H32A0.0398030.0065860.6165510.083*
H32B0.0300950.0763460.6109170.083*
C330.01114 (16)0.0248 (2)0.7231 (2)0.0631 (10)
H330.0189070.0682640.7054320.076*
C340.02224 (13)0.0390 (2)0.69482 (16)0.0532 (8)
C350.01116 (14)0.1028 (2)0.72289 (18)0.0582 (9)
H350.0188150.1462250.7050610.070*
C360.2890 (2)0.1678 (2)0.78884 (18)0.0718 (12)
H360.3051620.1252290.7786890.086*
C370.2967 (2)0.2017 (3)0.84139 (18)0.0782 (13)
H370.3191210.1876190.8737800.094*
C380.23986 (14)0.26132 (19)0.78391 (15)0.0484 (7)
H380.2158090.2960240.7700150.058*
C390.2614 (2)0.3162 (2)0.88439 (17)0.0656 (11)
H39A0.2318110.3474610.8739450.079*
H39B0.2929940.3452730.8866620.079*
C400.29225 (19)0.2940 (3)0.99184 (18)0.0733 (12)
H400.3209930.3232740.9866530.088*
C410.25504 (16)0.2821 (2)0.94459 (15)0.0555 (9)
C420.21347 (19)0.2377 (3)0.95350 (18)0.0760 (13)
H420.1885960.2288850.9219850.091*
O90.06430 (16)0.0822 (2)0.51541 (17)0.1048 (12)
O100.4733 (3)0.1303 (7)0.5644 (4)0.190 (4)0.75
O110.3252 (3)0.0187 (4)0.7401 (5)0.231 (4)
O120.3802 (4)0.0481 (8)0.8545 (4)0.218 (5)0.75
O130.4461 (3)0.1951 (4)0.8617 (4)0.205 (3)
O140.3995 (2)0.3330 (3)0.8817 (3)0.149 (2)
O150.1232 (4)0.3500 (5)0.7219 (4)0.110 (3)0.5
O160.0825 (7)0.3073 (9)0.6926 (8)0.201 (6)0.5
O170.0290 (4)0.4871 (6)0.6036 (6)0.142 (4)0.5
O180.0628 (2)0.3542 (4)0.5554 (3)0.164 (2)
O190.0481 (2)0.2013 (3)0.5488 (2)0.1211 (14)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Zn10.0652 (3)0.0520 (3)0.0485 (3)0.00767 (18)0.0080 (2)0.00127 (17)
O10.092 (2)0.080 (2)0.074 (2)0.0086 (18)0.0374 (17)0.0050 (17)
O20.089 (3)0.118 (3)0.151 (4)0.000 (2)0.065 (3)0.027 (3)
O30.0668 (16)0.0660 (17)0.0540 (15)0.0016 (13)0.0156 (12)0.0096 (12)
O40.095 (2)0.0632 (17)0.0742 (18)0.0235 (16)0.0323 (16)0.0026 (14)
N10.0531 (16)0.0471 (15)0.0553 (16)0.0076 (13)0.0033 (13)0.0075 (13)
N20.073 (2)0.0519 (17)0.0481 (16)0.0067 (15)0.0067 (14)0.0044 (13)
N30.071 (2)0.0533 (17)0.0516 (17)0.0054 (15)0.0004 (15)0.0099 (13)
N40.0487 (15)0.0421 (15)0.0691 (19)0.0052 (12)0.0017 (14)0.0068 (14)
N50.0580 (16)0.0483 (15)0.0453 (15)0.0024 (13)0.0115 (12)0.0017 (12)
C10.065 (3)0.083 (3)0.090 (3)0.012 (2)0.022 (2)0.032 (3)
C20.054 (2)0.060 (2)0.079 (3)0.0112 (18)0.0023 (19)0.018 (2)
C30.068 (3)0.064 (3)0.118 (4)0.008 (2)0.007 (3)0.018 (3)
C40.097 (4)0.069 (3)0.107 (4)0.000 (3)0.011 (3)0.014 (3)
C50.086 (3)0.063 (3)0.077 (3)0.010 (2)0.004 (2)0.010 (2)
C60.067 (2)0.0461 (19)0.054 (2)0.0180 (16)0.0021 (16)0.0033 (15)
C70.065 (2)0.054 (2)0.0505 (19)0.0202 (17)0.0068 (16)0.0048 (16)
C80.081 (3)0.066 (2)0.047 (2)0.007 (2)0.0101 (19)0.0053 (17)
C90.088 (3)0.065 (2)0.045 (2)0.009 (2)0.001 (2)0.0118 (17)
C100.073 (3)0.054 (2)0.047 (2)0.0024 (18)0.0080 (17)0.0044 (16)
C110.070 (3)0.065 (3)0.077 (3)0.003 (2)0.003 (2)0.022 (2)
C120.066 (2)0.049 (2)0.065 (2)0.0064 (17)0.0008 (18)0.0106 (17)
C130.108 (4)0.077 (3)0.063 (3)0.003 (3)0.006 (2)0.001 (2)
C140.105 (4)0.062 (3)0.088 (3)0.018 (2)0.021 (3)0.002 (2)
C150.054 (2)0.048 (2)0.083 (3)0.0074 (16)0.0026 (19)0.0085 (18)
C160.101 (3)0.062 (3)0.066 (3)0.013 (2)0.013 (2)0.004 (2)
C170.117 (4)0.053 (2)0.066 (3)0.021 (2)0.012 (2)0.0015 (19)
C180.054 (2)0.055 (2)0.113 (4)0.0036 (18)0.001 (2)0.020 (2)
C190.0528 (19)0.0494 (19)0.0506 (18)0.0053 (15)0.0117 (15)0.0042 (15)
C200.064 (2)0.060 (2)0.053 (2)0.0032 (18)0.0183 (17)0.0019 (17)
C210.068 (2)0.059 (2)0.064 (2)0.0043 (19)0.0114 (19)0.0105 (18)
Zn20.0533 (3)0.0526 (3)0.0404 (2)0.00723 (17)0.00812 (17)0.00025 (15)
O50.0595 (15)0.0591 (16)0.0701 (17)0.0074 (12)0.0144 (12)0.0094 (13)
O60.083 (2)0.0679 (19)0.117 (3)0.0150 (17)0.0103 (19)0.0342 (19)
O70.0580 (15)0.0609 (15)0.0586 (15)0.0035 (12)0.0091 (12)0.0005 (12)
O80.0667 (19)0.095 (2)0.121 (3)0.0198 (18)0.0283 (19)0.004 (2)
N60.0493 (15)0.0478 (15)0.0405 (14)0.0089 (12)0.0044 (11)0.0062 (11)
N70.0589 (16)0.0487 (15)0.0420 (14)0.0023 (13)0.0083 (12)0.0009 (12)
N80.076 (2)0.0500 (17)0.0369 (14)0.0002 (14)0.0074 (13)0.0006 (12)
N90.0486 (15)0.0531 (16)0.0429 (14)0.0039 (12)0.0095 (11)0.0039 (12)
N100.0503 (16)0.0661 (19)0.0460 (15)0.0104 (14)0.0077 (12)0.0019 (13)
C220.050 (2)0.061 (2)0.062 (2)0.0030 (17)0.0084 (16)0.0160 (18)
C230.0468 (18)0.060 (2)0.0471 (18)0.0108 (15)0.0092 (14)0.0131 (16)
C240.062 (2)0.076 (3)0.061 (2)0.020 (2)0.0190 (18)0.010 (2)
C250.087 (3)0.074 (3)0.052 (2)0.035 (2)0.022 (2)0.0064 (19)
C260.082 (3)0.051 (2)0.054 (2)0.0253 (19)0.0054 (19)0.0018 (16)
C270.062 (2)0.0435 (17)0.0433 (17)0.0111 (15)0.0006 (15)0.0045 (14)
C280.057 (2)0.049 (2)0.065 (2)0.0018 (16)0.0048 (17)0.0013 (17)
C290.0517 (19)0.055 (2)0.0476 (18)0.0014 (16)0.0043 (14)0.0060 (15)
C300.053 (2)0.055 (2)0.056 (2)0.0025 (16)0.0131 (16)0.0075 (16)
C310.066 (2)0.053 (2)0.063 (2)0.0064 (17)0.0173 (19)0.0013 (17)
C320.047 (2)0.100 (3)0.058 (2)0.018 (2)0.0008 (16)0.003 (2)
C330.057 (2)0.057 (2)0.077 (3)0.0044 (17)0.0147 (18)0.0129 (19)
C340.0375 (16)0.065 (2)0.057 (2)0.0077 (15)0.0007 (14)0.0008 (17)
C350.0463 (18)0.056 (2)0.072 (2)0.0033 (16)0.0017 (16)0.0110 (18)
C360.100 (3)0.063 (2)0.052 (2)0.024 (2)0.000 (2)0.0046 (18)
C370.109 (4)0.078 (3)0.045 (2)0.030 (3)0.009 (2)0.001 (2)
C380.0548 (19)0.0474 (18)0.0437 (17)0.0054 (15)0.0078 (14)0.0071 (14)
C390.098 (3)0.052 (2)0.047 (2)0.008 (2)0.0097 (19)0.0062 (16)
C400.082 (3)0.086 (3)0.052 (2)0.033 (2)0.007 (2)0.005 (2)
C410.075 (2)0.052 (2)0.0404 (17)0.0023 (17)0.0066 (16)0.0087 (15)
C420.082 (3)0.099 (3)0.045 (2)0.027 (3)0.0087 (19)0.003 (2)
O90.106 (3)0.128 (3)0.085 (2)0.007 (2)0.036 (2)0.011 (2)
O100.076 (4)0.329 (11)0.168 (7)0.017 (6)0.033 (4)0.016 (7)
O110.139 (6)0.194 (7)0.376 (14)0.006 (5)0.116 (7)0.021 (7)
O120.197 (9)0.324 (15)0.133 (7)0.067 (10)0.018 (6)0.005 (8)
O130.211 (7)0.167 (6)0.234 (9)0.048 (5)0.006 (6)0.035 (6)
O140.157 (5)0.133 (4)0.147 (5)0.014 (4)0.047 (4)0.015 (3)
O150.143 (7)0.091 (5)0.102 (6)0.039 (5)0.059 (5)0.024 (4)
O160.215 (13)0.217 (13)0.176 (11)0.022 (11)0.040 (10)0.081 (10)
O170.094 (6)0.137 (8)0.197 (12)0.008 (6)0.013 (7)0.024 (8)
O180.114 (4)0.163 (5)0.217 (7)0.007 (4)0.029 (4)0.004 (5)
O190.134 (4)0.116 (3)0.113 (3)0.020 (3)0.005 (3)0.005 (3)
Geometric parameters (Å, º) top
Zn1—O12.208 (3)Zn2—O72.209 (3)
Zn1—O32.151 (3)Zn2—N62.010 (3)
Zn1—N12.014 (3)Zn2—N71.984 (3)
Zn1—N21.984 (3)Zn2—N91.992 (3)
Zn1—N5i1.990 (3)O5—C281.277 (5)
O1—C11.267 (6)O6—C281.232 (5)
O2—C11.225 (6)O7—C221.260 (5)
O3—C71.257 (5)O8—C221.239 (5)
O4—C71.241 (4)N6—C231.329 (4)
N1—C21.332 (5)N6—C271.335 (5)
N1—C61.324 (5)N7—C361.370 (5)
N2—C81.383 (5)N7—C381.316 (5)
N2—C101.318 (5)N8—C371.380 (5)
N3—C91.362 (6)N8—C381.332 (4)
N3—C101.333 (5)N8—C391.461 (5)
N3—C111.482 (6)N9—C291.323 (5)
N4—C181.470 (5)N9—C301.368 (5)
N4—C191.324 (5)N10—C291.335 (5)
N4—C211.373 (5)N10—C311.375 (5)
N5—C191.308 (4)N10—C321.474 (5)
N5—C201.366 (5)C22—C231.514 (6)
C1—C21.506 (7)C23—C241.399 (5)
C2—C31.401 (7)C24—H240.9300
C3—H30.9300C24—C251.350 (7)
C3—C41.377 (8)C25—H250.9300
C4—H40.9300C25—C261.406 (7)
C4—C51.377 (8)C26—H260.9300
C5—H50.9300C26—C271.382 (5)
C5—C61.381 (6)C27—C281.500 (5)
C6—C71.518 (6)C29—H290.9300
C8—H80.9300C30—H300.9300
C8—C91.345 (7)C30—C311.340 (6)
C9—H90.9300C31—H310.9300
C10—H100.9300C32—H32A0.9700
C11—H11A0.9700C32—H32B0.9700
C11—H11B0.9700C32—C341.496 (6)
C11—C121.498 (5)C33—C33ii1.373 (8)
C12—C131.385 (6)C33—H330.9300
C12—C171.368 (6)C33—C341.388 (6)
C13—H130.9300C34—C351.385 (6)
C13—C141.382 (7)C35—C35ii1.383 (8)
C14—H140.9300C35—H350.9300
C14—C151.362 (7)C36—H360.9300
C15—C161.369 (6)C36—C371.340 (6)
C15—C181.500 (6)C37—H370.9300
C16—H160.9300C38—H380.9300
C16—C171.393 (6)C39—H39A0.9700
C17—H170.9300C39—H39B0.9700
C18—H18A0.9700C39—C411.515 (5)
C18—H18B0.9700C40—H400.9300
C19—H190.9300C40—C411.389 (6)
C20—H200.9300C40—C42iii1.380 (6)
C20—C211.332 (6)C41—C421.373 (6)
C21—H210.9300C42—H420.9300
Zn2—O52.172 (3)
O3—Zn1—O1152.50 (13)O5—Zn2—O7153.06 (10)
N1—Zn1—O175.70 (13)N6—Zn2—O576.93 (11)
N1—Zn1—O377.05 (11)N6—Zn2—O776.35 (11)
N2—Zn1—O198.27 (14)N7—Zn2—O5101.49 (12)
N2—Zn1—O394.35 (13)N7—Zn2—O793.77 (11)
N2—Zn1—N1125.19 (12)N7—Zn2—N6117.44 (11)
N2—Zn1—N5i114.81 (12)N7—Zn2—N9114.82 (12)
N5i—Zn1—O197.97 (12)N9—Zn2—O596.62 (12)
N5i—Zn1—O398.73 (11)N9—Zn2—O796.92 (11)
N5i—Zn1—N1119.99 (12)N9—Zn2—N6127.60 (11)
C1—O1—Zn1114.9 (3)C28—O5—Zn2114.4 (2)
C7—O3—Zn1115.2 (2)C22—O7—Zn2113.6 (2)
C2—N1—Zn1119.7 (3)C23—N6—Zn2119.2 (2)
C6—N1—Zn1118.2 (3)C23—N6—C27122.3 (3)
C6—N1—C2122.0 (4)C27—N6—Zn2118.5 (2)
C8—N2—Zn1130.5 (3)C36—N7—Zn2126.0 (3)
C10—N2—Zn1123.1 (3)C38—N7—Zn2127.8 (2)
C10—N2—C8105.9 (3)C38—N7—C36106.1 (3)
C9—N3—C11127.1 (4)C37—N8—C39126.3 (3)
C10—N3—C9107.4 (4)C38—N8—C37106.6 (3)
C10—N3—C11125.3 (4)C38—N8—C39127.1 (3)
C19—N4—C18126.4 (4)C29—N9—Zn2128.2 (3)
C19—N4—C21107.0 (3)C29—N9—C30106.2 (3)
C21—N4—C18126.5 (4)C30—N9—Zn2125.1 (2)
C19—N5—Zn1i128.6 (2)C29—N10—C31107.6 (3)
C19—N5—C20105.9 (3)C29—N10—C32126.7 (4)
C20—N5—Zn1i125.5 (2)C31—N10—C32125.4 (3)
O1—C1—C2115.4 (4)O7—C22—C23116.1 (3)
O2—C1—O1127.0 (5)O8—C22—O7125.6 (4)
O2—C1—C2117.5 (5)O8—C22—C23118.4 (4)
N1—C2—C1114.1 (4)N6—C23—C22114.0 (3)
N1—C2—C3119.7 (4)N6—C23—C24119.7 (4)
C3—C2—C1126.2 (4)C24—C23—C22126.3 (3)
C2—C3—H3120.8C23—C24—H24120.5
C4—C3—C2118.4 (5)C25—C24—C23119.1 (4)
C4—C3—H3120.8C25—C24—H24120.5
C3—C4—H4119.8C24—C25—H25119.6
C5—C4—C3120.5 (5)C24—C25—C26120.7 (4)
C5—C4—H4119.8C26—C25—H25119.6
C4—C5—H5120.8C25—C26—H26121.2
C4—C5—C6118.4 (5)C27—C26—C25117.6 (4)
C6—C5—H5120.8C27—C26—H26121.2
N1—C6—C5121.0 (4)N6—C27—C26120.6 (4)
N1—C6—C7113.8 (3)N6—C27—C28114.3 (3)
C5—C6—C7125.2 (4)C26—C27—C28125.1 (4)
O3—C7—C6115.5 (3)O5—C28—C27115.7 (3)
O4—C7—O3126.8 (4)O6—C28—O5126.2 (4)
O4—C7—C6117.8 (4)O6—C28—C27118.1 (4)
N2—C8—H8125.7N9—C29—N10110.4 (3)
C9—C8—N2108.6 (4)N9—C29—H29124.8
C9—C8—H8125.7N10—C29—H29124.8
N3—C9—H9126.5N9—C30—H30125.2
C8—C9—N3107.0 (4)C31—C30—N9109.6 (3)
C8—C9—H9126.5C31—C30—H30125.2
N2—C10—N3111.0 (4)N10—C31—H31126.9
N2—C10—H10124.5C30—C31—N10106.2 (3)
N3—C10—H10124.5C30—C31—H31126.9
N3—C11—H11A109.0N10—C32—H32A109.2
N3—C11—H11B109.0N10—C32—H32B109.2
N3—C11—C12112.8 (3)N10—C32—C34112.0 (3)
H11A—C11—H11B107.8H32A—C32—H32B107.9
C12—C11—H11A109.0C34—C32—H32A109.2
C12—C11—H11B109.0C34—C32—H32B109.2
C13—C12—C11122.0 (4)C33ii—C33—H33119.5
C17—C12—C11119.7 (4)C33ii—C33—C34121.0 (2)
C17—C12—C13118.3 (4)C34—C33—H33119.5
C12—C13—H13119.8C33—C34—C32121.2 (4)
C14—C13—C12120.5 (5)C35—C34—C32120.7 (4)
C14—C13—H13119.8C35—C34—C33118.1 (4)
C13—C14—H14119.4C34—C35—H35119.6
C15—C14—C13121.3 (4)C35ii—C35—C34120.9 (2)
C15—C14—H14119.4C35ii—C35—H35119.6
C14—C15—C16118.5 (4)N7—C36—H36125.4
C14—C15—C18120.9 (4)C37—C36—N7109.1 (4)
C16—C15—C18120.6 (4)C37—C36—H36125.4
C15—C16—H16119.5N8—C37—H37126.6
C15—C16—C17121.0 (4)C36—C37—N8106.8 (4)
C17—C16—H16119.5C36—C37—H37126.6
C12—C17—C16120.5 (4)N7—C38—N8111.4 (3)
C12—C17—H17119.8N7—C38—H38124.3
C16—C17—H17119.8N8—C38—H38124.3
N4—C18—C15112.6 (3)N8—C39—H39A109.4
N4—C18—H18A109.1N8—C39—H39B109.4
N4—C18—H18B109.1N8—C39—C41110.9 (3)
C15—C18—H18A109.1H39A—C39—H39B108.0
C15—C18—H18B109.1C41—C39—H39A109.4
H18A—C18—H18B107.8C41—C39—H39B109.4
N4—C19—H19124.3C41—C40—H40120.0
N5—C19—N4111.3 (3)C42iii—C40—H40120.0
N5—C19—H19124.3C42iii—C40—C41119.9 (4)
N5—C20—H20125.3C40—C41—C39120.1 (4)
C21—C20—N5109.5 (3)C42—C41—C39121.3 (4)
C21—C20—H20125.3C42—C41—C40118.6 (4)
N4—C21—H21126.8C40iii—C42—H42119.3
C20—C21—N4106.3 (3)C41—C42—C40iii121.5 (4)
C20—C21—H21126.8C41—C42—H42119.3
Zn1—O1—C1—O2179.6 (4)C21—N4—C19—N50.1 (4)
Zn1—O1—C1—C21.1 (5)Zn2—O5—C28—O6177.0 (4)
Zn1—O3—C7—O4177.0 (3)Zn2—O5—C28—C272.4 (4)
Zn1—O3—C7—C64.0 (4)Zn2—O7—C22—O8170.2 (4)
Zn1—N1—C2—C15.5 (4)Zn2—O7—C22—C239.8 (4)
Zn1—N1—C2—C3175.0 (3)Zn2—N6—C23—C220.7 (4)
Zn1—N1—C6—C5174.9 (3)Zn2—N6—C23—C24179.9 (3)
Zn1—N1—C6—C75.5 (4)Zn2—N6—C27—C26179.3 (3)
Zn1—N2—C8—C9170.5 (3)Zn2—N6—C27—C280.4 (4)
Zn1—N2—C10—N3172.0 (2)Zn2—N7—C36—C37174.6 (3)
Zn1i—N5—C19—N4177.9 (2)Zn2—N7—C38—N8174.8 (2)
Zn1i—N5—C20—C21177.9 (3)Zn2—N9—C29—N10171.5 (2)
O1—C1—C2—N12.6 (5)Zn2—N9—C30—C31171.4 (3)
O1—C1—C2—C3177.9 (4)O7—C22—C23—N66.6 (5)
O2—C1—C2—N1176.1 (4)O7—C22—C23—C24172.8 (3)
O2—C1—C2—C33.4 (7)O8—C22—C23—N6173.4 (4)
N1—C2—C3—C40.4 (7)O8—C22—C23—C247.2 (6)
N1—C6—C7—O36.3 (5)N6—C23—C24—C250.6 (5)
N1—C6—C7—O4174.7 (3)N6—C27—C28—O52.0 (5)
N2—C8—C9—N31.4 (5)N6—C27—C28—O6177.5 (4)
N3—C11—C12—C1394.6 (5)N7—C36—C37—N80.9 (6)
N3—C11—C12—C1787.5 (5)N8—C39—C41—C40119.8 (4)
N5—C20—C21—N40.4 (5)N8—C39—C41—C4258.7 (6)
C1—C2—C3—C4179.0 (5)N9—C30—C31—N100.8 (4)
C2—N1—C6—C51.4 (5)N10—C32—C34—C3399.3 (4)
C2—N1—C6—C7178.2 (3)N10—C32—C34—C3579.5 (5)
C2—C3—C4—C50.3 (8)C22—C23—C24—C25178.8 (4)
C3—C4—C5—C60.2 (8)C23—N6—C27—C260.9 (5)
C4—C5—C6—N10.7 (6)C23—N6—C27—C28179.8 (3)
C4—C5—C6—C7178.9 (4)C23—C24—C25—C260.5 (6)
C5—C6—C7—O3174.2 (4)C24—C25—C26—C270.3 (6)
C5—C6—C7—O44.9 (5)C25—C26—C27—N61.0 (5)
C6—N1—C2—C1178.3 (3)C25—C26—C27—C28179.7 (3)
C6—N1—C2—C31.2 (6)C26—C27—C28—O5179.2 (3)
C8—N2—C10—N30.3 (4)C26—C27—C28—O61.3 (6)
C9—N3—C10—N20.5 (4)C27—N6—C23—C22179.5 (3)
C9—N3—C11—C1267.4 (6)C27—N6—C23—C240.1 (5)
C10—N2—C8—C91.1 (4)C29—N9—C30—C310.7 (4)
C10—N3—C9—C81.1 (4)C29—N10—C31—C300.6 (4)
C10—N3—C11—C12118.4 (4)C29—N10—C32—C3494.2 (5)
C11—N3—C9—C8176.2 (4)C30—N9—C29—N100.3 (4)
C11—N3—C10—N2175.7 (3)C31—N10—C29—N90.2 (4)
C11—C12—C13—C14176.9 (5)C31—N10—C32—C3478.7 (5)
C11—C12—C17—C16178.0 (5)C32—N10—C29—N9174.1 (3)
C12—C13—C14—C151.0 (8)C32—N10—C31—C30174.6 (3)
C13—C12—C17—C160.0 (7)C32—C34—C35—C35ii179.9 (4)
C13—C14—C15—C160.1 (8)C33ii—C33—C34—C32179.9 (5)
C13—C14—C15—C18179.4 (5)C33ii—C33—C34—C351.3 (7)
C14—C15—C16—C171.2 (7)C33—C34—C35—C35ii1.1 (6)
C14—C15—C18—N486.7 (6)C36—N7—C38—N80.6 (4)
C15—C16—C17—C121.1 (8)C37—N8—C38—N70.0 (4)
C16—C15—C18—N493.8 (5)C37—N8—C39—C4148.9 (6)
C17—C12—C13—C141.0 (8)C38—N7—C36—C370.9 (5)
C18—N4—C19—N5178.8 (3)C38—N8—C37—C360.5 (5)
C18—N4—C21—C20179.1 (4)C38—N8—C39—C41134.6 (4)
C18—C15—C16—C17178.3 (4)C39—N8—C37—C36177.6 (4)
C19—N4—C18—C1595.0 (5)C39—N8—C38—N7177.0 (3)
C19—N4—C21—C200.2 (4)C39—C41—C42—C40iii179.4 (5)
C19—N5—C20—C210.4 (4)C40—C41—C42—C40iii0.9 (8)
C20—N5—C19—N40.3 (4)C42iii—C40—C41—C39179.5 (4)
C21—N4—C18—C1583.8 (5)C42iii—C40—C41—C420.9 (8)
Symmetry codes: (i) x+1/2, y1/2, z+1; (ii) x, y, z+3/2; (iii) x+1/2, y+1/2, z+2.
Hydrogen-bond geometry (Å, º) top
Cg3, Cg10 and Cg11 are the centroids of the N7/C36/C37/N8/C38,N2/C8/C9/N3/C10 and N4/C20/C21/N5/C19 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C18—H18A···O19iv0.972.453.421 (7)174
C19—H19···O9i0.932.443.328 (5)160
C21—H21···O15v0.932.503.394 (10)162
C21—H21···O16v0.932.413.278 (18)154
C29—H29···O190.932.473.213 (6)137
C30—H30···O4vi0.932.533.149 (5)124
C38—H38···O4vii0.932.582.988 (5)107
C5—H5···Cg3vii0.932.813.624 (5)146
C26—H26···Cg10vii0.932.613.443 (4)150
C42—H42···Cg11vi0.932.933.818 (5)161
Symmetry codes: (i) x+1/2, y1/2, z+1; (iv) x+1/2, y1/2, z; (v) x+1/2, y1/2, z+3/2; (vi) x, y, z+1/2; (vii) x+1/2, y+1/2, z+1.
Analysis of short ring interactions (Å). top
Cg(I) and Cg(J) are the centroids of rings I and J; CgI_Perp is the perpendicular distance of Cg(I) on ring J, and slippage is the distance between Cg(I) and the perpendicular projection of Cg(J) on ring I. Cg5, and Cg12 are the centroids of the N6/C23–C27 and N1/C2–C6 rings, respectively.
Cg(I)Cg(J)Symmetry_Cg(J)Cg(I)···Cg(J)CgI_PerpCgJ_PerpSlippage
Cg5Cg5-x + 1/2, -y + 1/2, -z + 13.646 (2)3.3521 (15)3.3521 (15)1.434
Cg5Cg12-x + 1/2, -y + 1/2, -z + 13.729 (3)3.6648 (15)3.6455 (19)0.782
Cg12Cg5-x + 1/2, -y + 1/2, -z + 13.728 (3)3.6453 (19)3.6648 (15)0.686
 

Acknowledgements

We are thankful for the support from the Department of Chemistry, Faculty of Science and Technology, Thammasat University, and the Thammasat University Research Unit in Multifunctional Crystalline Materials and Applications (TU-MCMA), Thammasat University.

Funding information

Funding for this research was provided by: Thammasat University Research Fund, Thammasat University. (contract No. TUFT 80/2564 to N. Wannarit).

References

First citationAdarsh, N. N., Novio, F. & Ruiz-Molina, D. (2016). Dalton Trans. 45, 11233–11255.  Web of Science CrossRef CAS PubMed Google Scholar
First citationAddison, A. W., Rao, N. T., Reedijk, J., van Rijn, J. & Verschoor, G. C. (1984). J. Chem. Soc. Dalton Trans. pp. 1349–1356.  CSD CrossRef Web of Science Google Scholar
First citationBatten, S. R., Champness, N. R., Chen, X.-M., Garcia-Martinez, J., Kitagawa, S., Öhrström, L., O'Keeffe, M., Suh, M. P. & Reedijk, J. (2012). CrystEngComm 14, 3001–3004.  CrossRef CAS Google Scholar
First citationBatten, S. R., Chen, B. & Vittal, J. J. (2016). ChemPlusChem 81, 669–670.  CrossRef CAS PubMed Google Scholar
First citationBourhis, L. J., Dolomanov, O. V., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2015). Acta Cryst. A71, 59–75.  Web of Science CrossRef IUCr Journals Google Scholar
First citationBruker (2016). APEX3 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.  Google Scholar
First citationBruno, I. J., Cole, J. C., Edgington, P. R., Kessler, M., Macrae, C. F., McCabe, P., Pearson, J. & Taylor, R. (2002). Acta Cryst. B58, 389–397.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationDiana, R., Caruso, U. & Panunzi, B. (2021). Polymers 13, 3712.  CrossRef PubMed Google Scholar
First citationDolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationDragutan, I., Ding, F., Sun, Y. & Dragutan, V. (2024). Crystals 14, 301.  CrossRef Google Scholar
First citationDu, M., Li, C.-P., Liu, C.-S. & Fang, S.-M. (2013). Coord. Chem. Rev. 257, 1282–1305.  Web of Science CrossRef CAS Google Scholar
First citationFromm, K. M., Batten, V. S. S., Neville, S. M. & Turner, D. R. (2009). Angew. Chem. 121, 4986–4987.  CrossRef Google Scholar
First citationGao, H.-L., Yi, L., Zhao, B., Zhao, X.-Q., Cheng, P., Liao, D.-Z. & Yan, S.-P. (2006). Inorg. Chem. 45, 5980–5988.  Web of Science CSD CrossRef PubMed CAS Google Scholar
First citationGroom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179.  Web of Science CrossRef IUCr Journals Google Scholar
First citationHoskins, B. F., Robson, R. & Slizys, D. A. (1997). J. Am. Chem. Soc. 119, 2952–2953.  CSD CrossRef CAS Web of Science Google Scholar
First citationKothawade, S. & Shende, P. (2024). Coord. Chem. Rev. 510, 215851.  CrossRef Google Scholar
First citationKrause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3–10.  Web of Science CSD CrossRef ICSD CAS IUCr Journals Google Scholar
First citationLi, N., Feng, R., Zhu, J., Chang, Z. & Bu, X.-H. (2018). Coord. Chem. Rev. 375, 558–586.  CrossRef CAS Google Scholar
First citationLi, Q., Ghosh, M. K., Wang, J., Lu, L., Sakiyama, H., Ghorai, T. K., Kushwaha, A., Prakash, O., Afzal, M. & Alarifi, A. (2023). J. Mol. Struct. 1284, 135430.  CrossRef Google Scholar
First citationLiu, T. F., Wu, W. F., Zhang, W. G. & Cui, G. H. (2011). Z. Anorg. Allg. Chem. 637, 148–153.  CrossRef CAS Google Scholar
First citationParmar, B., Bisht, K. K., Rachuri, Y. & Suresh, E. (2020). Inorg. Chem. Front. 7, 1082–1107.  Web of Science CrossRef CAS Google Scholar
First citationRobin, A. Y. & Fromm, K. M. (2006). Coord. Chem. Rev. 250, 2127–2157.  Web of Science CrossRef CAS Google Scholar
First citationSheldrick, G. M. (2015). Acta Cryst. C71, 3–8.  Web of Science CrossRef IUCr Journals Google Scholar
First citationSomnath, S., Ahmad, M. & Ahmad Siddiqui, K. (2022). Polyhedron 215, 115693.  CrossRef Google Scholar
First citationTripuramallu, B. K., Manna, P., Nagaprasad Reddy, S. & Das, S. K. (2012). Cryst. Growth Des. 12, 777–792.  Web of Science CSD CrossRef CAS Google Scholar
First citationVoda, I., Makhloufi, G., Lozan, V., Shova, S., Heering, C. & Janiak, C. (2017). Inorg. Chim. Acta 455, 118–131.  CrossRef CAS Google Scholar
First citationWen, L.-L., Lu, Z.-D., Ren, X.-M., Duan, C.-Y., Meng, Q.-J. & Gao, S. (2009). Cryst. Growth Des. 9, 227–238.  CrossRef CAS Google Scholar
First citationWestrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.  Web of Science CrossRef CAS IUCr Journals Google Scholar

This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890
Follow Acta Cryst. E
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds