research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

Crystal structure of tris­­[hexa­kis­(imidazole)cobalt(II)] bis­­(benzene-1,3,5-tri­carboxyl­ate)

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aDeutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607 Hamburg, Germany, bDepartment of Chemistry, National and Kapodistrian University of Athens (NKUA), Zografou 157 72, Greece, cBS 06 Berufliche Schule Chemie, Biologie, Pharmazie, Agrarwirtschaft, Ladenbeker, Furtweg 151, 21033 Hamburg, Germany, and dInstitut für Röntgenphysik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
*Correspondence e-mail: [email protected]

Edited by V. Jancik, Universidad Nacional Autónoma de México, México (Received 24 September 2025; accepted 11 November 2025; online 25 November 2025)

The title compound, [CoII(C3H4N2)6]3(C9H3O6)2 (1), was synthesized from cobalt chloride(II), benzene-1,3,5-tri­carb­oxy­lic acid (H3btc) and imidazole (Im) in an ethanol/DMF mixture via slow evaporation at room temperature. This compound consists of three hexa­kis­(imidazole)­cobalt(II) cations and two trimesate anions. Examination of the crystal packing shows the formation of one-dimensional stacks of ions propagating along the c axis. The packing inter­actions are primarily driven by N—H⋯O hydrogen bonding between anions and cations.

1. Chemical context

Benzene-1,3,5-tri­carb­oxy­lic acid (trimesic acid, H3btc) and imidazole derivatives are typically used in the synthesis of metal–organic frameworks (MOFs). For example, imidazole (Im) and 2-methyl­imidazole (2mIm) serve as ligands in the synthesis of the reported zeolitic imidazolate frameworks ZIF-4 and ZIF-8, respectively (Park et al., 2006View full citation). Likewise, H3btc is a key precursor in the synthesis of the well-known MOFs MIL-100 (Férey et al., 2004View full citation) and HKUST-1 (Chui et al., 1999View full citation). In previous work, we have employed 2-methyl­imidazole and H3btc to synthesize a small coordination complex (Velazquez-Garcia & Techert, 2022View full citation), various organic salts (Baletska et al., 2023View full citation; Asprilla-Herrera et al., 2025View full citation; Łukaszczyk et al., 2025View full citation) and two mixed-ligand MOFs (Velazquez Garcia et al., 2025View full citation). In the present study, we substituted 2-methyl­imidazole with imidazole to synthesize the title compound (1).

[Scheme 1]

2. Structural commentary

Compound 1 (Fig. 1[link]) crystallizes in the trigonal RMathematical equation space group. The complete group contains three hexa­kis­(imidazole)­cobalt(II) cations and two fully deprotonated btc3− anions. The asymmetric unit comprises one third of a btc3− anion and two crystallographically independent metal centres (Co1 and Co2) – one third of Co1 coordinated by two Im ligands and one sixth of Co2 coordinated by a single Im ligand. Both metal centres and the centre of mass of the btc3− ion lie on the Mathematical equation rotoinversion axis, while Co2 is located exactly on the inversion centre.

[Figure 1]
Figure 1
Crystal structure of 1 with displacement ellipsoids drawn at the 50% probability level. Atoms labelled by group are generated by the following symmetry operations: 1 − y, 1 + x − y, z for groups a, c and e; −x + y, 1 − x, z for groups b, d and f; Mathematical equation − x, Mathematical equation − y, Mathematical equation − z for fractions g and i; −Mathematical equation + y, Mathematical equation − x + y, Mathematical equation − z for group h.

To estimate the distortion from the ideal octa­hedral geometry of the cations, the parameters Σ (Halcrow, 2011View full citation) and Θ (Marchivie et al., 2005View full citation) were calculated using the OctaDist program (Ketkaew et al., 2021View full citation). While Σ summarizes the deviation of the N—Co—N angles from 90°, Θ indicates the degree of twist from a perfect octa­hedron towards a trigonal prism. In an ideal octa­hedron, both parameters are equal to zero, whereas Θ reaches 1140° for a perfect trigonal prism. The calculated values of the distortion parameters Σ/Θ for Co1 and Co2 are equal to 13°/27° and 10°/23°, respectively. Both parameters exhibit a slight distortion of the coordination environment of both metal centres.

3. Supra­molecular features

Crystal packing diagrams of compound 1 as viewed down the c and a axes are shown in Figs. 2[link] and 3[link], respectively. The figures show columns of ions stacked along the c axis, following a repeating polar arrangement: anion – cation – cation – anion – cation. Each column inter­acts with others via hydrogen bonding of the N—H⋯O type (Fig. 3[link]), summarized in Table 1[link]. The table demonstrates that all possible donor and acceptor groups are involved in moderate hydrogen bonds. The presence of different hydrogen bonds in 1 results in characteristic arrays that may be described by graph-set analysis (Etter et al., 1990View full citation; Bernstein et al., 1995View full citation). In the structure of 1, there are ten motifs involved in discrete D (all types), ring R (all types) and chains C (types b and d). Notably, hydrogen bonds b and d hold the aforementioned columns together, whereas a and c strengthen the inter­action between ions within the columns.

Table 1
Hydrogen-bond geometry (Å,°)

D—H⋯A Type Graph-set D—H H⋯A DA D—H⋯A
N4—H4⋯O1 a DR22(16) 0.856 (14) 1.908 (14) 2.7282 (17) 160.0 (4)
N2—H2⋯O1i b DC22(16) R66(48) 0.835 (13) 1.991 (13) 2.7661 (18) 154.0 (12)
N6—H6A⋯O2 c DR22(16) 0.841 (14) 2.075 (12) 2.8161 (17) 146.8 (4)
N6—H6A⋯O2ii d DC22(16) R44(32) R66(48) 0.841 (14) 2.446 (9) 3.0298 (17) 127.2 (3)
Symmetry codes: (i) Mathematical equation − x + y, 4/3 − x, Mathematical equation + z; (ii) 4/3 − x, Mathematical equation − y, Mathematical equation − z.
[Figure 2]
Figure 2
Packing diagram of 1 down the c axis.
[Figure 3]
Figure 3
Crystal packing of 1 viewed along the a axis, showing only two representative stacks for clarity. Only discrete graph-set motifs are highlighted (ad).

4. Database survey

No reported structures of the title compound were found in the Cambridge Structural Database (CSD version 5.45, update of November 2023; Groom et al., 2016View full citation). Some structures containing the hexa­kis­(imidazole)­cobalt(II) cation and polycarboxyl­ate anions were reported under the refcodes AGAXIS (Jyai & Srinivasan, 2019View full citation), BOVMIJ (Nie et al., 2009View full citation) and EFIVOE (Tong et al., 2002View full citation). However, none of them include btc3− as counter-ion but benzene-1,2-dicarboxylate, bis­(naphthalene-1,4-di­carboxyl­ate) and 1,4-benzene­dicarb­oxyl­ate, respectively.

5. Synthesis and crystallization

In a typical synthesis, 100 µL of a 0.11 M ethano­lic solution of CoCl2·6H2O was diluted with 100 µL of N,N-di­methyl­formamide, followed by the addition of 120 µL of a 1.58 M ethano­lic solution of imidazole. Then, 100 µL of a 0.12 M ethano­lic solution of H3btc was added to the mixture. The resulting mixture was gently shaken and allowed to dry slowly at room temperature. After three weeks, red crystals of 1 were obtained.

6. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link]. The positions of hydrogen atoms were refined with Uiso(H) = 1.2Ueq(C or N) for CH and NH groups. Hydrogen atoms bonded to nitro­gen atoms (N—H) were treated with free refinement of bond distances. The most disagreeable reflections (Mathematical equation50 and 244) with error/s.u. of more than ten were omitted using the OMIT instruction in SHELXL (Sheldrick, 2015bView full citation).

Table 2
Experimental details

Crystal data
Chemical formula [Co(C3H4N2)6]3(C9H3O6)2
Mr 1816.49
Crystal system, space group Trigonal, RMathematical equation
Temperature (K) 100
a, c (Å) 15.215 (2), 30.494 (6)
V3) 6113 (2)
Z 3
Radiation type Mo Kα
μ (mm−1) 0.69
Crystal size (mm) 0.6 × 0.4 × 0.2
 
Data collection
Diffractometer Bruker P4
Absorption correction Multi-scan (SADABS; Krause et al., 2015View full citation)
Tmin, Tmax 0.690, 0.748
No. of measured, independent and observed [I > 2σ(I)] reflections 28365, 3380, 3106
Rint 0.031
(sin θ/λ)max−1) 0.667
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.028, 0.076, 1.04
No. of reflections 3380
No. of parameters 199
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.45, −0.33
Computer programs: APEX2 and APEX2 (Bruker, 2016View full citation), SHELXT2018/2 (Sheldrick, 2015aView full citation), SHELXL2018/3 (Sheldrick, 2015bView full citation) and OLEX2 (Dolomanov et al., 2009View full citation).

Supporting information


Computing details top

Tris[hexakis(imidazole)cobalt(II)] bis(benzene-1,3,5-tricarboxylate) top
Crystal data top
[Co(C3H4N2)6]3(C9H3O6)2Dx = 1.480 Mg m3
Mr = 1816.49Mo Kα radiation, λ = 0.71073 Å
Trigonal, R3Cell parameters from 9869 reflections
a = 15.215 (2) Åθ = 2.7–39.6°
c = 30.494 (6) ŵ = 0.69 mm1
V = 6113 (2) Å3T = 100 K
Z = 3Rhombohedral, red
F(000) = 28170.6 × 0.4 × 0.2 mm
Data collection top
Bruker P4
diffractometer
Rint = 0.031
ω scansθmax = 28.3°, θmin = 1.7°
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
h = 2020
Tmin = 0.690, Tmax = 0.748k = 2020
28365 measured reflectionsl = 4040
3380 independent reflectionsStandard reflections: not measured; every not measured reflections
3106 reflections with I > 2σ(I) intensity decay: not measured
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.076 w = 1/[σ2(Fo2) + (0.0345P)2 + 12.840P]
where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
3380 reflectionsΔρmax = 0.45 e Å3
199 parametersΔρmin = 0.32 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Co10.3333330.6666670.55111 (2)0.00919 (8)
Co20.3333330.6666670.1666670.00965 (10)
O20.59402 (7)0.71916 (7)0.34095 (3)0.01540 (19)
O10.50598 (7)0.56614 (7)0.37221 (3)0.01563 (19)
N10.46175 (8)0.69448 (8)0.59020 (3)0.0127 (2)
N30.35884 (8)0.56677 (8)0.50903 (3)0.0129 (2)
N50.46325 (8)0.75844 (8)0.20837 (3)0.0131 (2)
N40.40359 (9)0.51431 (9)0.44997 (4)0.0165 (2)
H40.4338 (7)0.51618 (10)0.4260 (5)0.020*
N20.58846 (8)0.75732 (9)0.63733 (4)0.0160 (2)
H20.6292 (9)0.7952 (9)0.6564 (4)0.019*
N60.56893 (9)0.80854 (9)0.26463 (4)0.0163 (2)
H6A0.5978 (7)0.80585 (11)0.2877 (5)0.020*
C110.42044 (9)0.65755 (9)0.35769 (4)0.0121 (2)
C120.32434 (9)0.57106 (9)0.35767 (4)0.0128 (2)
H120.31828 (15)0.5068 (12)0.35765 (4)0.015*
C100.51488 (9)0.64817 (9)0.35684 (4)0.0122 (2)
C40.41613 (10)0.59442 (10)0.47339 (4)0.0153 (2)
H4A0.4609 (9)0.6629 (13)0.46533 (16)0.018*
C70.49165 (10)0.72946 (10)0.24412 (4)0.0152 (2)
H70.4615 (6)0.6621 (13)0.25389 (19)0.018*
C10.51171 (10)0.76558 (10)0.61989 (4)0.0170 (2)
H10.4959 (3)0.8149 (10)0.62771 (16)0.020*
C90.52659 (10)0.86245 (10)0.20645 (4)0.0184 (3)
H90.52491 (11)0.9039 (9)0.1851 (4)0.022*
C80.59212 (11)0.89424 (11)0.24123 (5)0.0202 (3)
H80.6424 (10)0.9607 (14)0.24769 (14)0.024*
C20.58792 (11)0.67609 (11)0.61821 (5)0.0211 (3)
H2A0.6330 (9)0.6514 (5)0.62393 (13)0.025*
C30.50915 (11)0.63748 (11)0.58913 (5)0.0201 (3)
H30.4896 (4)0.5789 (12)0.5706 (4)0.024*
C60.30649 (11)0.46203 (10)0.50802 (4)0.0200 (3)
H60.2597 (10)0.4201 (9)0.5291 (4)0.024*
C50.33334 (12)0.42898 (11)0.47158 (5)0.0243 (3)
H50.3089 (5)0.3622 (15)0.46314 (19)0.029*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Co10.00977 (10)0.00977 (10)0.00803 (13)0.00488 (5)0.0000.000
Co20.01060 (13)0.01060 (13)0.00775 (18)0.00530 (6)0.0000.000
O20.0124 (4)0.0163 (4)0.0162 (4)0.0061 (4)0.0005 (3)0.0012 (3)
O10.0194 (4)0.0169 (4)0.0148 (4)0.0122 (4)0.0048 (3)0.0028 (3)
N10.0134 (5)0.0136 (5)0.0114 (5)0.0069 (4)0.0001 (4)0.0005 (4)
N30.0138 (5)0.0136 (5)0.0121 (5)0.0074 (4)0.0003 (4)0.0004 (4)
N50.0135 (5)0.0142 (5)0.0114 (5)0.0067 (4)0.0001 (4)0.0002 (4)
N40.0216 (6)0.0174 (5)0.0128 (5)0.0116 (5)0.0047 (4)0.0000 (4)
N20.0133 (5)0.0196 (5)0.0125 (5)0.0062 (4)0.0026 (4)0.0019 (4)
N60.0161 (5)0.0218 (6)0.0118 (5)0.0101 (5)0.0037 (4)0.0026 (4)
C110.0132 (5)0.0151 (6)0.0093 (5)0.0080 (5)0.0003 (4)0.0000 (4)
C120.0153 (6)0.0127 (6)0.0109 (5)0.0074 (5)0.0005 (4)0.0003 (4)
C100.0139 (5)0.0150 (6)0.0091 (5)0.0082 (5)0.0012 (4)0.0030 (4)
C40.0167 (6)0.0143 (6)0.0151 (6)0.0079 (5)0.0023 (5)0.0002 (5)
C70.0150 (6)0.0174 (6)0.0131 (6)0.0080 (5)0.0008 (4)0.0003 (4)
C10.0175 (6)0.0205 (6)0.0148 (6)0.0109 (5)0.0021 (5)0.0039 (5)
C90.0191 (6)0.0149 (6)0.0171 (6)0.0053 (5)0.0035 (5)0.0009 (5)
C80.0190 (6)0.0166 (6)0.0204 (6)0.0055 (5)0.0053 (5)0.0022 (5)
C20.0182 (6)0.0241 (7)0.0246 (7)0.0133 (6)0.0062 (5)0.0036 (5)
C30.0201 (6)0.0211 (7)0.0238 (7)0.0138 (6)0.0074 (5)0.0060 (5)
C60.0262 (7)0.0140 (6)0.0179 (6)0.0087 (5)0.0081 (5)0.0017 (5)
C50.0334 (8)0.0139 (6)0.0228 (7)0.0098 (6)0.0106 (6)0.0000 (5)
Geometric parameters (Å, º) top
Co1—N12.1426 (11)N2—H20.836 (19)
Co1—N1i2.1426 (11)N2—C11.3448 (17)
Co1—N1ii2.1426 (11)N2—C21.3629 (18)
Co1—N32.1673 (11)N6—H6A0.840 (19)
Co1—N3ii2.1673 (11)N6—C71.3441 (17)
Co1—N3i2.1673 (11)N6—C81.3689 (18)
Co2—N5iii2.1710 (11)C11—C12i1.3965 (17)
Co2—N5ii2.1712 (11)C11—C121.3948 (17)
Co2—N52.1711 (11)C11—C101.5136 (17)
Co2—N5iv2.1711 (11)C12—H120.935 (18)
Co2—N5i2.1711 (11)C4—H4A0.949 (18)
Co2—N5v2.1711 (11)C7—H70.938 (18)
O2—C101.2452 (16)C1—H10.927 (18)
O1—C101.2755 (15)C9—H90.917 (19)
N1—C11.3212 (17)C9—C81.3679 (18)
N1—C31.3780 (17)C8—H80.935 (19)
N3—C41.3233 (16)C2—H2A0.948 (19)
N3—C61.3805 (17)C2—C31.3652 (19)
N5—C71.3269 (16)C3—H30.968 (19)
N5—C91.3826 (17)C6—H60.935 (19)
N4—H40.855 (18)C6—C51.3637 (19)
N4—C41.3413 (17)C5—H50.93 (2)
N4—C51.3690 (18)
N1—Co1—N1i92.04 (4)C1—N2—H2126.2
N1—Co1—N1ii92.04 (4)C1—N2—C2107.69 (11)
N1i—Co1—N1ii92.04 (4)C2—N2—H2126.2
N1i—Co1—N3ii89.24 (4)C7—N6—H6A126.2
N1ii—Co1—N3i177.42 (4)C7—N6—C8107.68 (11)
N1—Co1—N3i89.24 (4)C8—N6—H6A126.2
N1ii—Co1—N3ii90.15 (4)C12—C11—C12i119.40 (12)
N1—Co1—N390.15 (4)C12—C11—C10120.52 (11)
N1i—Co1—N3i90.15 (4)C12i—C11—C10120.07 (11)
N1i—Co1—N3177.42 (4)C11—C12—C11ii120.60 (12)
N1ii—Co1—N389.24 (4)C11—C12—H12119.7
N1—Co1—N3ii177.42 (4)C11ii—C12—H12119.7
N3—Co1—N3i88.52 (4)O2—C10—O1125.12 (11)
N3—Co1—N3ii88.52 (4)O2—C10—C11118.48 (11)
N3ii—Co1—N3i88.52 (4)O1—C10—C11116.40 (11)
N5iii—Co2—N5iv89.17 (4)N3—C4—N4112.12 (12)
N5v—Co2—N590.83 (4)N3—C4—H4A123.9
N5v—Co2—N5ii180.00 (6)N4—C4—H4A123.9
N5iii—Co2—N5i180.0N5—C7—N6111.68 (12)
N5iv—Co2—N5ii90.83 (4)N5—C7—H7124.2
N5iv—Co2—N5i90.83 (4)N6—C7—H7124.2
N5i—Co2—N589.17 (4)N1—C1—N2111.44 (12)
N5iii—Co2—N5v89.17 (4)N1—C1—H1124.3
N5iii—Co2—N5ii90.83 (4)N2—C1—H1124.3
N5iv—Co2—N5v89.17 (4)N5—C9—H9125.1
N5i—Co2—N5ii89.17 (4)C8—C9—N5109.85 (12)
N5iii—Co2—N590.83 (4)C8—C9—H9125.1
N5—Co2—N5ii89.17 (4)N6—C8—H8127.1
N5iv—Co2—N5180.00 (4)C9—C8—N6105.80 (12)
N5i—Co2—N5v90.83 (4)C9—C8—H8127.1
C1—N1—Co1129.61 (9)N2—C2—H2A127.1
C1—N1—C3105.28 (11)N2—C2—C3105.89 (12)
C3—N1—Co1125.11 (9)C3—C2—H2A127.1
C4—N3—Co1125.72 (9)N1—C3—H3125.2
C4—N3—C6104.88 (11)C2—C3—N1109.70 (12)
C6—N3—Co1128.35 (9)C2—C3—H3125.2
C7—N5—Co2127.63 (9)N3—C6—H6125.1
C7—N5—C9105.00 (11)C5—C6—N3109.72 (12)
C9—N5—Co2126.92 (9)C5—C6—H6125.1
C4—N4—H4126.4N4—C5—H5126.9
C4—N4—C5107.12 (11)C6—C5—N4106.16 (12)
C5—N4—H4126.4C6—C5—H5126.9
Co1—N1—C1—N2179.95 (8)C10—C11—C12—C11ii178.88 (8)
Co1—N1—C3—C2179.87 (10)C4—N3—C6—C50.21 (16)
Co1—N3—C4—N4169.11 (8)C4—N4—C5—C60.41 (17)
Co1—N3—C6—C5168.45 (10)C7—N5—C9—C80.03 (16)
Co2—N5—C7—N6172.93 (8)C7—N6—C8—C90.42 (15)
Co2—N5—C9—C8172.72 (9)C1—N1—C3—C20.46 (16)
N3—C6—C5—N40.39 (18)C1—N2—C2—C30.16 (16)
N5—C9—C8—N60.28 (16)C9—N5—C7—N60.24 (15)
N2—C2—C3—N10.18 (17)C8—N6—C7—N50.42 (15)
C12i—C11—C12—C11ii0.1 (2)C2—N2—C1—N10.47 (16)
C12i—C11—C10—O225.08 (17)C3—N1—C1—N20.57 (15)
C12—C11—C10—O2153.71 (12)C6—N3—C4—N40.05 (15)
C12—C11—C10—O125.38 (17)C5—N4—C4—N30.30 (16)
C12i—C11—C10—O1155.82 (11)
Symmetry codes: (i) y+1, xy+1, z; (ii) x+y, x+1, z; (iii) y1/3, x+y+1/3, z+1/3; (iv) x+2/3, y+4/3, z+1/3; (v) xy+2/3, x+1/3, z+1/3.
Hydrogen-bond geometry (Å,°) top
D—H···ATypeGraph-setD—HH···AD···AD—H···A
N4—H4···O1aDR22(16)0.856 (14)1.908 (14)2.7282 (17)160.0 (4)
N2—H2···O1ibDC22(16)R66(48)0.835 (13)1.991 (13)2.7661 (18)154.0 (12)
N6—H6A···O2cDR22(16)0.841 (14)2.075 (12)2.8161 (17)146.8 (4)
N6—H6A···O2iidDC22(16)R44(32)R66(48)0.841 (14)2.446 (9)3.0298 (17)127.2 (3)
Symmetry codes: (i) 2/3 - x + y, 4/3 - x, 1/3 + z; (ii) 4/3 - x, 5/3 - y, 2/3 - z.
 

Funding information

Funding for this research was provided by: HG-recruitment, HG-Innovation "FISCOV", "FISVIR" and the CMWS (grant to ST). CB thanks the DESY-Helmholtz-Summer student fund for financial support.

References

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