research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

Consistent supra­molecular motifs and different local symmetries in the structures of 2-amino-5-(4-fluoro­phen­yl)-1,3-thia­zole-4-carbaldehyde and 2-amino-5-(4-chloro­phen­yl)-1,3-thia­zole-4-carbaldehyde

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aKosygin State University of Russia, 117997 Moscow, Russian Federation, bN.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russian Federation, cRussian State Agrarian University-Moscow Timiryazev Agricultural Academy, 127550 Moscow, Russian Federation, dDepartment of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye, eExcellence Center, Baku State University, Z. Xalilov Str. 23, Az 1148 Baku, Azerbaijan, fAzerbaijan Medical University, Scientific Research Centre (SRC), Kasumzade St. 14. AZ 1022, Baku, Azerbaijan, and gDepartment of Chemistry, Bahir Dar University, PO Box 79, Bahir Dar, Ethiopia
*Correspondence e-mail: [email protected]

Edited by W. T. A. Harrison, University of Aberdeen, United Kingdom (Received 17 September 2025; accepted 29 November 2025; online 1 January 2026)

The first title compound, C10H7FN2OS, crystallizes in space group P1 with two independent mol­ecules in the asymmetric unit, which form a dimer with an R22(8) motif through pairwise N—H⋯N hydrogen bonds. In the crystal of (I), N—H⋯O hydrogen bonds bind the dimers into zigzag ribbons running along the [100] direction, generating R44(14) motifs. The second title compound, C10H7ClN2OS (space group I2/a), contains one mol­ecule in the asymmetric unit, which forms a dimer with an R22(8) motif via inversion symmetry. In the extended structure, the mol­ecules form zigzag ribbons in the [100] direction by N—H⋯N and N—H⋯O hydrogen bonds, resulting in consecutive R41(8)R21(5)R22(8)R21(5)R41(8) motifs. The Hirshfeld surface analyses of the compounds (I) and (II) indicates that the most important factors influencing the crystal packing are H⋯H inter­actions [21.1% for mol­ecule A of (I), 20.3% for mol­ecule B of (I) and 21.0% for (II)].

1. Chemical context

Thia­zole and its derivatives are known for their broad spectrum of biological applications, such as anti­microbial, anti-inflammatory, anti­viral, anti­tubercular and CNS active agents and for their anti­cancer activities (Basarab et al., 2012View full citation; Shaikh et al., 2023View full citation). It should be noted that the thia­zole-4-carbaldehyde fragment is part of the natural polyketide thuggacin A, which has high anti-tuberculosis activity (Liu et al., 2025View full citation). Earlier, we showed that acetal-containing chloro­oxiranes and their isomeric chloro­ketones are effective starting reagents for obtaining heterocyclic systems, in particular, heterocyclic aldehydes (Guseinov & Yudina, 1998View full citation; Guseinov et al., 2017View full citation).

[Scheme 1]

In this work, we describe a one-step synthetic protocol to access 2-amino-5-(4-halophen­yl)thia­zole-4-carbaldehydes and a study of their structural features using X-ray diffraction.

2. Structural commentary

Compound (I)[link] crystallizes in the triclinic space group P[\overline{1}] with two crystallographically independent mol­ecules, A and B, in the asymmetric unit (Fig. 1[link]). An overlay fit of inverted mol­ecule B on mol­ecule A is shown in supplementary Fig. S1: the weighted r.m.s. fit of the 15 non-H atoms being 0.114 Å with the major differences being in the terminal benzene rings of mol­ecules A and B. The dihedral angle between the planes of the five and six-membered rings is 61.74 (8)° for A and 57.07 (8)° for B. Selected bond lengths include C9A—F9A = 1.3580 (18) Å for mol­ecule A and C9B—F9B = 1.3626 (17) Å for mol­ecule B. The C—N bond lengths in the five-membered rings are C2A—N3A = 1.308 (2) and C4A—N3A = 1.384 (2) Å for A and C2B—N3B = 1.309 (2) and C4B—N3B = 1.388 (2) Å for B. The C—N bond length attached to the five-membered ring of the NH2 group is C2A—N12A = 1.343 (2) Å for A and C2B—N12B = 1.344 (2) Å for B.

[Figure 1]
Figure 1
The asymmetric unit of (I)[link] with displacement ellipsoids drawn at the 50% probability level.

Compound (II)[link], which crystallizes in space group I2/a with one mol­ecule in the asymmetric unit (Fig. 2[link]) has a non planar conformation in which the dihedral angle between the planes of the benzene and 1,3-thia­zole rings is 56.50 (8)°. The torsion angles S1—C5—C6—C7 and C4—C5—C6—C11 are −57.7 (2) and −53.7 (3)°, respectively. The C—N lengths [C2—N3 and C4—N3] in the five-membered ring are 1.307 (2) and 1.386 (2) Å, respectively. The C—N length [C2—N12] for the NH2 group attached to the ring is 1.346 (2) Å and the C9—Cl9 bond length is 1.7410 (16) Å.

[Figure 2]
Figure 2
The asymmetric unit of (II)[link] with displacement ellipsoids drawn at the 50% probability level.

Otherwise, the bond lengths and angles in compounds (I)[link] and (II)[link] are normal and can be compared with each other and with those in the Database Survey section.

3. Supra­molecular features and Hirshfeld surface analyses

The two independent mol­ecules (A and B) in the asymmetric unit of (I)[link] form a dimer with an R22(8) motif through pairwise N—H⋯N hydrogen bonds (Table 1[link]). In the crystal, N—H⋯O hydrogen bonds link the dimers into zigzag ribbons extending along the [100] direction, producing R44(14) motifs between them (Fig. 3[link]). Additionally, the mol­ecules in these ribbons form R23(11) motifs through C—H⋯S and C—H⋯F inter­actions, resulting in a three-dimensional supra­molecular network. A weak C—H⋯π inter­action also occurs (supplementary Figs. S2–S4).

Table 1
Hydrogen-bond geometry (Å, °) for (I)[link]

D—H⋯A D—H H⋯A DA D—H⋯A
N12A—H12A⋯N3B 0.87 (2) 2.16 (3) 3.0121 (19) 167 (2)
N12A—H12B⋯O14Ai 0.86 (2) 2.13 (2) 2.9596 (19) 160 (2)
N12B—H12C⋯O14Bii 0.82 (2) 2.16 (2) 2.9433 (19) 161 (2)
N12B—H12D⋯N3A 0.87 (3) 2.13 (3) 2.9778 (19) 164 (2)
C8A—H8A⋯S1Biii 0.95 2.91 3.6376 (16) 134
C8B—H8B⋯N3Aiv 0.95 2.68 3.521 (2) 149
C13B—H13B⋯F9Av 0.95 2.60 3.4911 (19) 157
C7B—H7BCg3iv 0.95 2.75 3.4117 (17) 127
Symmetry codes: (i) [x+1, y, z]; (ii) [x-1, y, z]; (iii) [x, y, z-1]; (iv) [-x+1, -y+1, -z+1]; (v) [x+1, y, z+1].
[Figure 3]
Figure 3
Partial packing diagram for (I)[link] showing ribbons extending along the [100] direction with an [ R22(8) R44(14)]n motif formed by N—H⋯N and N—H⋯O hydrogen bonds. Symmetry codes: (i) x + 1, y, z; (iii) x - 1, y, z.

In the extended structure of (II)[link], the mol­ecules are linked through N—H⋯N and N—H⋯O hydrogen bonds (Table 2[link]), forming zigzag ribbons propagating along the [100] direction, generating successive R14(8) R12(5) R22(8) R12(5) R14(8) motifs (Fig. 4[link]). In addition, ππ [Cg2⋯Cg2a = 3.8099 (11) Å, slippage = 1.011 Å; symmetry code (a) [{3\over 2}] − x, y, 1 − z; Cg2 is the centroid of the (C6–C11) benzene ring] and C—Cl⋯π inter­actions (Table 1[link]) connect these ribbons along the [010] and [001] directions to generate a three-dimensional supra­molecular network (supplementary Figs. S5–S7).

Table 2
Hydrogen-bond geometry (Å, °) for (II)[link]

D—H⋯A D—H H⋯A DA D—H⋯A
N12—H12A⋯N3i 0.84 (3) 2.19 (3) 3.015 (2) 167 (2)
N12—H12A⋯O14i 0.84 (3) 2.61 (3) 3.1222 (19) 121 (2)
N12—H12B⋯O14ii 0.81 (3) 2.18 (3) 2.940 (2) 159 (2)
C9—Cl9⋯Cg1iii 1.74 (1) 3.53 (1) 4.5317 (19) 114 (1)
Symmetry codes: (i) [-x+1, -y+1, -z]; (ii) [x+{\script{1\over 2}}, -y+1, z]; (iii) [x, -y+{\script{3\over 2}}, z+{\script{1\over 2}}].
[Figure 4]
Figure 4
A partial view of the packing of (II)[link] showing N—H⋯N and N—H⋯O hydrogen bonds, forming zigzag ribbons propagating along the [100] direction, with successive [ R14(8) R12(5) R22(8) R12(5) R14(8)]n motifs. Symmetry codes: (i) −x + 1, −y + 1, −z; (ii) x + [{1\over 2}], −y + 1, z; (iii) x + [{1\over 2}], −y + 1, z.

Crystal Explorer 21 (Spackman et al., 2021View full citation) was used to construct Hirshfeld surfaces for both independent mol­ecules A and B in the asymmetric unit of compound (I)[link]. The dnorm mappings for mol­ecule A were performed in the range of −0.49 to +1.11 a.u., and for mol­ecule B in the range of −0.49 to +1.11 a.u. On the dnorm surfaces, bold red circles show the locations of N—H⋯O and N—H⋯N inter­actions (Fig. 5[link]). Smaller red spots are caused by the C—H⋯S inter­actions.

[Figure 5]
Figure 5
View of the three-dimensional Hirshfeld surfaces of the mol­ecules A (a) and B (b) of (I)[link], and (c) (II)[link] plotted over dnorm.

Fingerprint plots (Fig. 6[link]) for (I)[link] reveal that H⋯H (21.1% for mol­ecule A and 20.3% for mol­ecule B) inter­actions make the largest contributions to the surface contacts and O⋯H/H⋯O (16.0% for A and 13.5% for B), C⋯H/H⋯C (13.1% for A and 16.1% for B), N⋯H/H⋯N (11.7% for A and 13.1% for B) and F⋯H/H⋯F (10.3% for A and 10.2% for B) contacts are also significant. The inter­actions that have less of an influence include S⋯H/H⋯S (9.7% for A and 6.2% for B), C⋯C (5.6% for A and 5.8% for B), F⋯C/C⋯F (4.3% for A and B), S⋯F/F⋯S (2.6% for A and 3.2% for B), S⋯C/C⋯S (1.9% for A and 2.7% for B), F⋯O/O⋯F (1.0% for A and 0.9% for B), F⋯F (0.6% for A and 0.0% for B) and F⋯N/N⋯F (0.2% for A and B).

[Figure 6]
Figure 6
Two-dimensional fingerprint plots of mol­ecules A and B of (I)[link], and (II)[link] showing (a) all inter­actions, and delineated into (b) H⋯H, (c) O⋯H/H⋯O, (d) C⋯H/H⋯C, (e) N⋯H/H⋯N for A and B of (I)[link] and Cl⋯H/H⋯Cl for (II)[link], and (f) F⋯H/H⋯F for A and B of (I)[link] and S⋯H/H⋯S for (II)[link], inter­actions.

The solid-state consolidation in (II)[link] is significantly impacted by H⋯H inter­actions, which account for 21.0% of the total. The inter­actions that have less of an influence include O⋯H/H⋯O (15.3%), C⋯H/H⋯C (12.1%), Cl⋯H/H⋯Cl (9.9%) and S⋯H/H⋯S (7.9%), C⋯C (6.8%), Cl⋯C/C⋯Cl (6.7%), Cl⋯S/S⋯Cl (3.7%), S⋯O / O⋯S (2.1%), Cl⋯Cl (1.8%), Cl⋯N/N⋯Cl (0.8%), N⋯C/C⋯N (0.5%), S⋯S (0.31%) and S⋯C / C⋯S (0.2%).

While the contributions of the strong inter­actions of (I)[link] and (II)[link] are quite consistent, weak inter­actions vary slightly depending on the mol­ecular conformation and the environment of the mol­ecules.

4. Database survey

The most closely related ten structures containing a 5-phenyl-1,3-thia­zole fragment are as follows: Cambridge Structural Database (CSD, Version 6.00, update of April 2025; Groom et al., 2016View full citation) refcodes MEFVUS (Guseinov et al., 2022View full citation), IQUHOT (Saravanan et al., 2016View full citation), GUVVAW (Akkurt et al., 2015View full citation), WOJKOX (Mague et al., 2014View full citation), HOQSAJ (El Ashry et al., 2014View full citation), SAYXEW (Sun et al., 2006View full citation), EKEZUP (Rybakov et al., 2003View full citation), HIYLOQ (Au-Alvarez et al., 1999View full citation), FUHJIB (Caldwell et al., 1987View full citation) and CPYPTZ (Le Count & Jarvis, 1977View full citation).

In the crystal of MEFVUS, C—H⋯π inter­actions link the mol­ecules, forming a three-dimensional network. In IQUHOT, the mol­ecules are linked via C—H⋯O inter­actions, which form C(7) chains propagating along [010]. In the crystal of GUVVAW, the mol­ecular packing features C—H⋯O and C—H⋯π inter­actions, forming a three-dimensional network. In WOJKOX, the two independent mol­ecules are associated via complementary N—H⋯N hydrogen bonds into a dimer. These dimers are associated through weak C— H⋯Cl and C—H⋯S inter­actions into supra­molecular chains propagating along the a-axis direction. In HOQSAJ, mol­ecular pairs connect by forming R22(8) motifs via N—H⋯N inter­actions. A three-dimensional network is established through C—H⋯π and C—Br⋯π inter­actions. In SAYXEW, similarly to HOQSAJ, mol­ecular pairs come together via N—H⋯N inter­actions to form R22(8) motifs. A three-dimensional network is formed with C—H⋯π inter­actions. In EKEZUP, mol­ecules form extended chains through O—H⋯N hydrogen bonds. In HIYLOQ, mol­ecules are linked in parallel layers through N—H⋯N and N—H⋯S inter­actions in the bc plane. The layers are connected by C—H⋯π inter­actions. In FUHJIB, mol­ecules are connected to each other by forming ribbons in the [110] direction. The mol­ecular packing features C—H⋯O and C—H⋯F inter­actions. Additional C—F⋯π and C—O⋯π inter­actions consolidate the packing. In CPYPTZ, mol­ecules are linked in the b-axis direction as C(7) zigzag chains through N—H⋯N inter­actions. The mol­ecules form a three-dimensional network via C≡C⋯π inter­actions.

5. Synthesis and crystallization

To a solution of 2-chloro-2-(di­eth­oxy­meth­yl)-3-(4-fluoro­phen­yl)oxirane [also called 1-chloro-3,3-dieth­oxy-1-(4-fluoro­phen­yl)propan-2-one] (1.00 mmol) in 20 ml of ethanol (95%) was added thio­urea (1.00 mmol) and refluxed at 353 K for 2 h (Fig. 7[link]). Then the ethanol was evacuated under vacuum and the resulting yellow powder of (I)[link] was recrystallized from diethyl ether solution. Crystals suitable for X-ray diffraction were obtained by crystallization of this yellow powder from di­methyl­sulfoxide (DMSO) solution: yield: 91 or 73%; m.p. 378–380 K. Analysis calculated (%) for C10H7FN2OS: C 54.05, H 3.17, N 12.61; found C 54.04, H 3.15, N 12.58. 1H NMR (300MHz, DMSO-d6): 6.73 (2H, NH2), 7.38–7.75 (4H, Ar), 9.48 (1H, CHO). 13C NMR (75MHz, DMSO-d6): 116.07, 116.51, 124.00, 132.13, 132.30, 136.44, 137.62, 160.66, 165.60, 167.03, 180.12.

[Figure 7]
Figure 7
Synthesis scheme for (I)[link] and (II)[link].

2-Chloro-2-(di­eth­oxy­meth­yl)-3-(4-chloro­phen­yl)oxirane [also called 1-chloro-3,3-dieth­oxy-1-(4-chloro­phen­yl)propan-2-one] was used as a starting material in the synthesis of (II)[link], otherwise the synthetic procedure was the same as for (I)[link]: yield: 95 or 77%; m.p. 397–398 K. Analysis calculated (%) for C10H7ClN2OS: C 50.32, H 2.96, N 11.74; found C 50.28 H 2.95, N 11.70. 1H NMR (300MHz, DMSO-d6): 7.51–7.66 (4H, Ar), 8.36 (2H, NH2), 9.48 (1H, CHO). 13C NMR (75MHz, DMSO-d6): 126.18, 129.42, 131.67, 135.08, 135.49, 136.94, 167.45, 179.75.

6. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3[link]. The C-bound H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å. The H atoms of the NH2 groups were found in difference-Fourier maps and their positions were freely refined.

Table 3
Experimental details

  (I) (II)
Crystal data
Chemical formula C10H7FN2OS C10H7ClN2OS
Mr 222.24 238.69
Crystal system, space group Triclinic, P[\overline{1}] Monoclinic, I2/a
Temperature (K) 100 100
a, b, c (Å) 7.6272 (1), 9.0292 (1), 14.7403 (3) 13.9857 (2), 9.8459 (1), 15.3349 (2)
α, β, γ (°) 90.567 (1), 98.122 (1), 108.526 (1) 90, 105.170 (1), 90
V3) 951.24 (3) 2038.06 (5)
Z 4 8
Radiation type Cu Kα Cu Kα
μ (mm−1) 2.95 5.01
Crystal size (mm) 0.27 × 0.22 × 0.15 0.53 × 0.38 × 0.30
 
Data collection
Diffractometer XtaLAB Synergy, Dualflex, HyPix XtaLAB Synergy, Dualflex, HyPix
Absorption correction Gaussian (CrysAlis PRO; Rigaku OD, 2025View full citation) Gaussian (CrysAlisPr; (Rigaku OD, 2025View full citation)
Tmin, Tmax 0.482, 0.642 0.169, 0.859
No. of measured, independent and observed [I > 2σ(I)] reflections 25299, 4097, 3888 13963, 2220, 2165
Rint 0.047 0.043
(sin θ/λ)max−1) 0.638 0.639
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.036, 0.098, 1.09 0.036, 0.094, 1.07
No. of reflections 4097 2220
No. of parameters 287 144
H-atom treatment H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.30, −0.32 0.37, −0.37
Computer programs: CrysAlis PRO (Rigaku OD, 2025View full citation), SHELXS97 (Sheldrick, 2008View full citation), SHELXL2014 (Sheldrick, 2015View full citation), ORTEP-3 for Windows (Farrugia, 2012View full citation) and PLATON (Spek, 2020View full citation).

Supporting information


Computing details top

2-Amino-5-(4-fluorophenyl)-1,3-thiazole-4-carbaldehyde (I) top
Crystal data top
C10H7FN2OSZ = 4
Mr = 222.24F(000) = 456
Triclinic, P1Dx = 1.552 Mg m3
a = 7.6272 (1) ÅCu Kα radiation, λ = 1.54184 Å
b = 9.0292 (1) ÅCell parameters from 15352 reflections
c = 14.7403 (3) Åθ = 3.0–79.1°
α = 90.567 (1)°µ = 2.95 mm1
β = 98.122 (1)°T = 100 K
γ = 108.526 (1)°Prism, yellow
V = 951.24 (3) Å30.27 × 0.22 × 0.15 mm
Data collection top
XtaLAB Synergy, Dualflex, HyPix
diffractometer
4097 independent reflections
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source3888 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.047
Detector resolution: 10.0000 pixels mm-1θmax = 79.8°, θmin = 3.0°
ω scansh = 99
Absorption correction: gaussian
(CrysAlisPro; Rigaku OD, 2025)
k = 1111
Tmin = 0.482, Tmax = 0.642l = 1818
25299 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: mixed
wR(F2) = 0.098H atoms treated by a mixture of independent and constrained refinement
S = 1.09 w = 1/[σ2(Fo2) + (0.0488P)2 + 0.4701P]
where P = (Fo2 + 2Fc2)/3
4097 reflections(Δ/σ)max = 0.001
287 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = 0.32 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C2A0.6615 (2)0.83196 (18)0.12921 (10)0.0221 (3)
C2B0.4924 (2)0.83630 (18)0.38518 (10)0.0213 (3)
C4A0.3723 (2)0.77903 (18)0.05708 (10)0.0220 (3)
C4B0.7501 (2)0.80308 (18)0.45848 (10)0.0219 (3)
C5A0.4497 (2)0.75647 (19)0.01828 (11)0.0229 (3)
C5B0.6445 (2)0.76230 (18)0.52804 (10)0.0215 (3)
C6A0.3598 (2)0.70487 (19)0.11352 (10)0.0232 (3)
C6B0.6890 (2)0.71135 (18)0.62088 (10)0.0214 (3)
C7A0.4107 (2)0.80140 (19)0.18549 (11)0.0257 (3)
H7A0.5076560.8991450.1731950.031*
C7B0.5773 (2)0.56850 (19)0.64774 (11)0.0238 (3)
H7B0.4748340.5042110.6054760.029*
C8A0.3209 (2)0.7556 (2)0.27469 (11)0.0274 (3)
H8A0.3520420.8223140.3234690.033*
C8B0.6136 (2)0.51914 (19)0.73517 (11)0.0245 (3)
H8B0.5388050.4213540.7531720.029*
C9A0.1857 (2)0.6112 (2)0.29078 (11)0.0271 (3)
C9B0.7615 (2)0.6165 (2)0.79501 (10)0.0236 (3)
C10A0.1335 (2)0.5107 (2)0.22235 (12)0.0276 (3)
H10A0.0401830.4112580.2359690.033*
C10B0.8742 (2)0.7586 (2)0.77200 (11)0.0261 (3)
H10B0.9747040.8228050.8152480.031*
C11A0.2213 (2)0.5591 (2)0.13282 (11)0.0252 (3)
H11A0.1869230.4924710.0843450.030*
C11B0.8374 (2)0.80602 (19)0.68379 (11)0.0241 (3)
H11B0.9138480.9035510.6663200.029*
C13A0.1778 (2)0.7715 (2)0.05284 (11)0.0256 (3)
H13A0.0975360.7417700.0043400.031*
C13B0.9386 (2)0.79426 (19)0.46269 (11)0.0244 (3)
H13B0.9932380.7602250.5170600.029*
F9A0.09835 (16)0.56466 (13)0.37805 (7)0.0361 (3)
F9B0.79817 (14)0.56898 (12)0.88103 (6)0.0293 (2)
N3A0.49060 (18)0.82060 (15)0.14004 (9)0.0215 (3)
N3B0.66485 (18)0.84586 (16)0.37814 (9)0.0216 (3)
N12A0.8086 (2)0.87201 (17)0.19689 (10)0.0257 (3)
N12B0.3726 (2)0.86969 (18)0.31901 (9)0.0247 (3)
O14A0.11253 (16)0.80146 (16)0.11929 (8)0.0305 (3)
O14B1.02965 (16)0.82851 (15)0.39967 (8)0.0294 (3)
S1A0.68838 (5)0.79416 (5)0.01534 (3)0.02509 (11)
S1B0.42376 (5)0.77503 (5)0.49132 (2)0.02230 (11)
H12A0.786 (3)0.873 (3)0.2530 (17)0.036 (6)*
H12B0.911 (3)0.856 (2)0.1879 (15)0.029 (5)*
H12C0.265 (3)0.853 (2)0.3284 (15)0.028 (5)*
H12D0.392 (3)0.865 (3)0.2623 (19)0.043 (6)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C2A0.0243 (7)0.0251 (7)0.0184 (7)0.0090 (6)0.0054 (6)0.0024 (6)
C2B0.0240 (7)0.0248 (7)0.0153 (7)0.0081 (6)0.0033 (5)0.0016 (5)
C4A0.0232 (7)0.0257 (7)0.0172 (7)0.0078 (6)0.0038 (6)0.0026 (6)
C4B0.0229 (7)0.0248 (7)0.0166 (7)0.0064 (6)0.0013 (6)0.0018 (5)
C5A0.0251 (7)0.0254 (7)0.0198 (7)0.0094 (6)0.0055 (6)0.0040 (6)
C5B0.0216 (7)0.0242 (7)0.0176 (7)0.0066 (6)0.0011 (6)0.0000 (6)
C6A0.0270 (7)0.0293 (8)0.0171 (7)0.0137 (6)0.0054 (6)0.0032 (6)
C6B0.0231 (7)0.0272 (8)0.0155 (7)0.0107 (6)0.0028 (5)0.0017 (6)
C7A0.0311 (8)0.0274 (8)0.0207 (8)0.0110 (6)0.0072 (6)0.0020 (6)
C7B0.0248 (7)0.0266 (8)0.0194 (7)0.0084 (6)0.0012 (6)0.0020 (6)
C8A0.0363 (9)0.0327 (8)0.0183 (7)0.0159 (7)0.0092 (6)0.0065 (6)
C8B0.0288 (8)0.0253 (7)0.0205 (7)0.0094 (6)0.0058 (6)0.0041 (6)
C9A0.0321 (8)0.0370 (9)0.0157 (7)0.0175 (7)0.0007 (6)0.0003 (6)
C9B0.0291 (8)0.0319 (8)0.0136 (7)0.0153 (6)0.0034 (6)0.0037 (6)
C10A0.0285 (8)0.0303 (8)0.0235 (8)0.0099 (7)0.0019 (6)0.0014 (6)
C10B0.0259 (8)0.0323 (8)0.0190 (7)0.0095 (6)0.0011 (6)0.0000 (6)
C11A0.0277 (8)0.0298 (8)0.0197 (7)0.0110 (6)0.0046 (6)0.0055 (6)
C11B0.0236 (7)0.0273 (8)0.0202 (7)0.0070 (6)0.0020 (6)0.0031 (6)
C13A0.0220 (7)0.0342 (8)0.0200 (7)0.0083 (6)0.0024 (6)0.0016 (6)
C13B0.0223 (7)0.0284 (8)0.0215 (7)0.0074 (6)0.0019 (6)0.0033 (6)
F9A0.0448 (6)0.0443 (6)0.0173 (5)0.0153 (5)0.0030 (4)0.0012 (4)
F9B0.0375 (5)0.0352 (5)0.0157 (4)0.0133 (4)0.0017 (4)0.0060 (4)
N3A0.0219 (6)0.0266 (6)0.0168 (6)0.0082 (5)0.0039 (5)0.0024 (5)
N3B0.0221 (6)0.0272 (6)0.0157 (6)0.0082 (5)0.0027 (5)0.0016 (5)
N12A0.0219 (7)0.0369 (8)0.0191 (7)0.0109 (6)0.0032 (5)0.0011 (5)
N12B0.0227 (7)0.0383 (8)0.0167 (6)0.0140 (6)0.0048 (5)0.0051 (5)
O14A0.0261 (6)0.0447 (7)0.0237 (6)0.0140 (5)0.0077 (5)0.0019 (5)
O14B0.0244 (6)0.0378 (7)0.0282 (6)0.0109 (5)0.0087 (5)0.0069 (5)
S1A0.0238 (2)0.0362 (2)0.01781 (19)0.01206 (16)0.00570 (14)0.00075 (15)
S1B0.02187 (19)0.0323 (2)0.01454 (18)0.01058 (15)0.00423 (13)0.00355 (14)
Geometric parameters (Å, º) top
C2A—N3A1.308 (2)C7B—H7B0.9500
C2A—N12A1.343 (2)C8A—C9A1.375 (3)
C2A—S1A1.7623 (16)C8A—H8A0.9500
C2B—N3B1.309 (2)C8B—C9B1.377 (2)
C2B—N12B1.344 (2)C8B—H8B0.9500
C2B—S1B1.7585 (15)C9A—F9A1.3580 (18)
C4A—C5A1.372 (2)C9A—C10A1.379 (2)
C4A—N3A1.384 (2)C9B—F9B1.3626 (17)
C4A—C13A1.455 (2)C9B—C10B1.375 (2)
C4B—C5B1.374 (2)C10A—C11A1.391 (2)
C4B—N3B1.388 (2)C10A—H10A0.9500
C4B—C13B1.458 (2)C10B—C11B1.392 (2)
C5A—C6A1.473 (2)C10B—H10B0.9500
C5A—S1A1.7391 (16)C11A—H11A0.9500
C5B—C6B1.477 (2)C11B—H11B0.9500
C5B—S1B1.7342 (16)C13A—O14A1.224 (2)
C6A—C11A1.397 (2)C13A—H13A0.9500
C6A—C7A1.399 (2)C13B—O14B1.222 (2)
C6B—C11B1.394 (2)C13B—H13B0.9500
C6B—C7B1.398 (2)N12A—H12A0.87 (2)
C7A—C8A1.387 (2)N12A—H12B0.86 (2)
C7A—H7A0.9500N12B—H12C0.82 (2)
C7B—C8B1.388 (2)N12B—H12D0.87 (3)
N3A—C2A—N12A124.52 (14)C7B—C8B—H8B121.1
N3A—C2A—S1A114.34 (12)F9A—C9A—C8A118.78 (15)
N12A—C2A—S1A121.12 (12)F9A—C9A—C10A118.06 (16)
N3B—C2B—N12B124.89 (14)C8A—C9A—C10A123.16 (15)
N3B—C2B—S1B114.47 (11)F9B—C9B—C10B118.52 (14)
N12B—C2B—S1B120.64 (12)F9B—C9B—C8B118.27 (14)
C5A—C4A—N3A117.22 (14)C10B—C9B—C8B123.21 (14)
C5A—C4A—C13A123.57 (14)C9A—C10A—C11A118.06 (16)
N3A—C4A—C13A119.09 (13)C9A—C10A—H10A121.0
C5B—C4B—N3B116.79 (14)C11A—C10A—H10A121.0
C5B—C4B—C13B123.91 (14)C9B—C10B—C11B118.36 (15)
N3B—C4B—C13B119.19 (13)C9B—C10B—H10B120.8
C4A—C5A—C6A129.84 (15)C11B—C10B—H10B120.8
C4A—C5A—S1A108.53 (12)C10A—C11A—C6A120.60 (15)
C6A—C5A—S1A121.61 (12)C10A—C11A—H11A119.7
C4B—C5B—C6B131.24 (14)C6A—C11A—H11A119.7
C4B—C5B—S1B108.86 (11)C10B—C11B—C6B120.44 (15)
C6B—C5B—S1B119.89 (11)C10B—C11B—H11B119.8
C11A—C6A—C7A119.25 (15)C6B—C11B—H11B119.8
C11A—C6A—C5A120.25 (14)O14A—C13A—C4A123.26 (15)
C7A—C6A—C5A120.50 (15)O14A—C13A—H13A118.4
C11B—C6B—C7B119.10 (14)C4A—C13A—H13A118.4
C11B—C6B—C5B121.07 (14)O14B—C13B—C4B123.17 (15)
C7B—C6B—C5B119.79 (14)O14B—C13B—H13B118.4
C8A—C7A—C6A120.52 (16)C4B—C13B—H13B118.4
C8A—C7A—H7A119.7C2A—N3A—C4A110.35 (13)
C6A—C7A—H7A119.7C2B—N3B—C4B110.30 (13)
C8B—C7B—C6B121.03 (15)C2A—N12A—H12A117.5 (16)
C8B—C7B—H7B119.5C2A—N12A—H12B119.2 (14)
C6B—C7B—H7B119.5H12A—N12A—H12B118 (2)
C9A—C8A—C7A118.37 (15)C2B—N12B—H12C117.4 (15)
C9A—C8A—H8A120.8C2B—N12B—H12D118.1 (17)
C7A—C8A—H8A120.8H12C—N12B—H12D118 (2)
C9B—C8B—C7B117.85 (15)C5A—S1A—C2A89.53 (7)
C9B—C8B—H8B121.1C5B—S1B—C2B89.59 (7)
N3A—C4A—C5A—C6A176.64 (15)F9B—C9B—C10B—C11B179.38 (14)
C13A—C4A—C5A—C6A7.5 (3)C8B—C9B—C10B—C11B0.3 (3)
N3A—C4A—C5A—S1A1.54 (18)C9A—C10A—C11A—C6A0.7 (2)
C13A—C4A—C5A—S1A174.34 (13)C7A—C6A—C11A—C10A0.6 (2)
N3B—C4B—C5B—C6B179.83 (15)C5A—C6A—C11A—C10A178.85 (15)
C13B—C4B—C5B—C6B3.8 (3)C9B—C10B—C11B—C6B0.3 (2)
N3B—C4B—C5B—S1B0.85 (18)C7B—C6B—C11B—C10B0.3 (2)
C13B—C4B—C5B—S1B175.17 (13)C5B—C6B—C11B—C10B178.03 (15)
C4A—C5A—C6A—C11A60.0 (2)C5A—C4A—C13A—O14A175.19 (17)
S1A—C5A—C6A—C11A118.02 (15)N3A—C4A—C13A—O14A0.6 (3)
C4A—C5A—C6A—C7A119.5 (2)C5B—C4B—C13B—O14B178.76 (16)
S1A—C5A—C6A—C7A62.50 (19)N3B—C4B—C13B—O14B2.8 (2)
C4B—C5B—C6B—C11B58.8 (2)N12A—C2A—N3A—C4A179.29 (15)
S1B—C5B—C6B—C11B122.33 (15)S1A—C2A—N3A—C4A0.69 (17)
C4B—C5B—C6B—C7B123.49 (19)C5A—C4A—N3A—C2A0.6 (2)
S1B—C5B—C6B—C7B55.40 (19)C13A—C4A—N3A—C2A175.49 (14)
C11A—C6A—C7A—C8A2.1 (2)N12B—C2B—N3B—C4B179.90 (15)
C5A—C6A—C7A—C8A177.39 (15)S1B—C2B—N3B—C4B0.31 (17)
C11B—C6B—C7B—C8B0.9 (2)C5B—C4B—N3B—C2B0.8 (2)
C5B—C6B—C7B—C8B178.70 (14)C13B—C4B—N3B—C2B175.45 (14)
C6A—C7A—C8A—C9A2.2 (2)C4A—C5A—S1A—C2A1.52 (12)
C6B—C7B—C8B—C9B1.0 (2)C6A—C5A—S1A—C2A176.85 (14)
C7A—C8A—C9A—F9A179.31 (15)N3A—C2A—S1A—C5A1.32 (13)
C7A—C8A—C9A—C10A0.8 (3)N12A—C2A—S1A—C5A179.98 (14)
C7B—C8B—C9B—F9B180.00 (14)C4B—C5B—S1B—C2B0.53 (12)
C7B—C8B—C9B—C10B0.4 (2)C6B—C5B—S1B—C2B179.65 (13)
F9A—C9A—C10A—C11A179.26 (14)N3B—C2B—S1B—C5B0.13 (13)
C8A—C9A—C10A—C11A0.6 (3)N12B—C2B—S1B—C5B179.67 (14)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N12A—H12A···N3B0.87 (2)2.16 (3)3.0121 (19)167 (2)
N12A—H12B···O14Ai0.86 (2)2.13 (2)2.9596 (19)160 (2)
N12B—H12C···O14Bii0.82 (2)2.16 (2)2.9433 (19)161 (2)
N12B—H12D···N3A0.87 (3)2.13 (3)2.9778 (19)164 (2)
C8A—H8A···S1Biii0.952.913.6376 (16)134
C8B—H8B···N3Aiv0.952.683.521 (2)149
C13B—H13B···F9Av0.952.603.4911 (19)157
C7B—H7B···Cg3iv0.952.753.4117 (17)127
Symmetry codes: (i) x+1, y, z; (ii) x1, y, z; (iii) x, y, z1; (iv) x+1, y+1, z+1; (v) x+1, y, z+1.
2-Amino-5-(4-chlorophenyl)-1,3-thiazole-4-carbaldehyde (II) top
Crystal data top
C10H7ClN2OSF(000) = 976
Mr = 238.69Dx = 1.556 Mg m3
Monoclinic, I2/aCu Kα radiation, λ = 1.54184 Å
a = 13.9857 (2) ÅCell parameters from 9428 reflections
b = 9.8459 (1) Åθ = 5.4–79.9°
c = 15.3349 (2) ŵ = 5.01 mm1
β = 105.170 (1)°T = 100 K
V = 2038.06 (5) Å3Prism, yellow
Z = 80.53 × 0.38 × 0.30 mm
Data collection top
XtaLAB Synergy, Dualflex, HyPix
diffractometer
2220 independent reflections
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source2165 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.043
Detector resolution: 10.0000 pixels mm-1θmax = 80.3°, θmin = 5.4°
ω scansh = 1717
Absorption correction: gaussian
(CrysAlisPr; (Rigaku OD, 2025)
k = 1012
Tmin = 0.169, Tmax = 0.859l = 1919
13963 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: mixed
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.07 w = 1/[σ2(Fo2) + (0.0543P)2 + 2.2643P]
where P = (Fo2 + 2Fc2)/3
2220 reflections(Δ/σ)max = 0.001
144 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = 0.37 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C20.59720 (12)0.44375 (16)0.12413 (11)0.0197 (3)
C40.50163 (12)0.54350 (17)0.19941 (10)0.0194 (3)
C50.57830 (12)0.51273 (16)0.27300 (10)0.0194 (3)
C60.59306 (12)0.55034 (17)0.36882 (11)0.0202 (3)
C70.61451 (13)0.45314 (18)0.43726 (11)0.0227 (3)
H70.6185490.3600400.4223600.027*
C80.63007 (13)0.49141 (18)0.52726 (11)0.0237 (3)
H80.6439530.4250020.5738230.028*
C90.62502 (13)0.62773 (18)0.54796 (11)0.0230 (3)
C100.60396 (13)0.72642 (18)0.48120 (12)0.0258 (4)
H100.6004210.8194190.4965650.031*
C110.58812 (13)0.68741 (18)0.39163 (12)0.0242 (4)
H110.5737970.7542610.3453490.029*
C130.41003 (13)0.60683 (17)0.20523 (11)0.0211 (3)
H130.4019770.6275620.2634010.025*
Cl90.64554 (3)0.67747 (4)0.66029 (3)0.02945 (14)
N30.51246 (10)0.50539 (14)0.11549 (9)0.0193 (3)
N120.62848 (12)0.39102 (17)0.05542 (10)0.0240 (3)
O140.34230 (9)0.63509 (13)0.13888 (8)0.0242 (3)
S10.66956 (3)0.42813 (4)0.23650 (2)0.02012 (13)
H12A0.597 (2)0.418 (3)0.0043 (19)0.033 (6)*
H12B0.687 (2)0.376 (2)0.0650 (17)0.028 (6)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C20.0236 (8)0.0222 (7)0.0133 (7)0.0032 (6)0.0052 (6)0.0007 (6)
C40.0238 (8)0.0223 (7)0.0128 (7)0.0026 (6)0.0058 (6)0.0007 (6)
C50.0224 (7)0.0225 (7)0.0143 (7)0.0001 (6)0.0065 (6)0.0005 (6)
C60.0216 (7)0.0264 (8)0.0131 (7)0.0009 (6)0.0051 (6)0.0016 (6)
C70.0261 (8)0.0248 (8)0.0167 (8)0.0035 (6)0.0050 (6)0.0014 (6)
C80.0286 (8)0.0278 (8)0.0138 (7)0.0052 (6)0.0042 (6)0.0022 (6)
C90.0252 (8)0.0310 (9)0.0123 (7)0.0048 (6)0.0040 (6)0.0034 (6)
C100.0333 (9)0.0244 (8)0.0185 (8)0.0029 (7)0.0048 (7)0.0024 (6)
C110.0308 (9)0.0249 (8)0.0157 (8)0.0019 (6)0.0043 (6)0.0020 (6)
C130.0266 (8)0.0226 (7)0.0152 (7)0.0011 (6)0.0075 (6)0.0009 (6)
Cl90.0417 (3)0.0328 (2)0.0120 (2)0.00928 (17)0.00381 (17)0.00327 (14)
N30.0225 (6)0.0242 (6)0.0118 (6)0.0025 (5)0.0057 (5)0.0015 (5)
N120.0228 (7)0.0350 (8)0.0141 (7)0.0030 (6)0.0047 (6)0.0028 (6)
O140.0226 (6)0.0308 (6)0.0186 (6)0.0005 (5)0.0040 (5)0.0010 (5)
S10.0216 (2)0.0264 (2)0.0123 (2)0.00179 (13)0.00437 (15)0.00110 (13)
Geometric parameters (Å, º) top
C2—N31.307 (2)C8—C91.385 (3)
C2—N121.346 (2)C8—H80.9500
C2—S11.7620 (16)C9—C101.386 (3)
C4—C51.372 (2)C9—Cl91.7410 (16)
C4—N31.386 (2)C10—C111.387 (2)
C4—C131.448 (2)C10—H100.9500
C5—C61.477 (2)C11—H110.9500
C5—S11.7349 (16)C13—O141.227 (2)
C6—C71.394 (2)C13—H130.9500
C6—C111.400 (2)N12—H12A0.84 (3)
C7—C81.392 (2)N12—H12B0.81 (3)
C7—H70.9500
N3—C2—N12124.85 (15)C8—C9—C10121.58 (15)
N3—C2—S1114.41 (12)C8—C9—Cl9119.62 (13)
N12—C2—S1120.71 (13)C10—C9—Cl9118.80 (14)
C5—C4—N3116.88 (15)C9—C10—C11119.03 (16)
C5—C4—C13123.91 (15)C9—C10—H10120.5
N3—C4—C13119.15 (14)C11—C10—H10120.5
C4—C5—C6129.71 (15)C10—C11—C6120.57 (16)
C4—C5—S1108.86 (12)C10—C11—H11119.7
C6—C5—S1121.23 (12)C6—C11—H11119.7
C7—C6—C11119.25 (15)O14—C13—C4123.35 (15)
C7—C6—C5121.58 (15)O14—C13—H13118.3
C11—C6—C5119.15 (15)C4—C13—H13118.3
C8—C7—C6120.52 (16)C2—N3—C4110.36 (14)
C8—C7—H7119.7C2—N12—H12A114.3 (18)
C6—C7—H7119.7C2—N12—H12B116.8 (18)
C9—C8—C7119.04 (16)H12A—N12—H12B119 (2)
C9—C8—H8120.5C5—S1—C289.48 (8)
C7—C8—H8120.5
N3—C4—C5—C6173.71 (16)Cl9—C9—C10—C11179.63 (14)
C13—C4—C5—C69.2 (3)C9—C10—C11—C60.2 (3)
N3—C4—C5—S11.08 (18)C7—C6—C11—C100.3 (3)
C13—C4—C5—S1176.03 (13)C5—C6—C11—C10178.47 (16)
C4—C5—C6—C7128.1 (2)C5—C4—C13—O14179.28 (16)
S1—C5—C6—C757.7 (2)N3—C4—C13—O143.7 (3)
C4—C5—C6—C1153.7 (3)N12—C2—N3—C4178.02 (16)
S1—C5—C6—C11120.52 (16)S1—C2—N3—C40.09 (18)
C11—C6—C7—C80.5 (3)C5—C4—N3—C20.7 (2)
C5—C6—C7—C8178.71 (16)C13—C4—N3—C2176.60 (15)
C6—C7—C8—C90.7 (3)C4—C5—S1—C20.89 (12)
C7—C8—C9—C100.6 (3)C6—C5—S1—C2174.43 (14)
C7—C8—C9—Cl9179.35 (13)N3—C2—S1—C50.59 (13)
C8—C9—C10—C110.3 (3)N12—C2—S1—C5178.61 (15)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N12—H12A···N3i0.84 (3)2.19 (3)3.015 (2)167 (2)
N12—H12A···O14i0.84 (3)2.61 (3)3.1222 (19)121 (2)
N12—H12B···O14ii0.81 (3)2.18 (3)2.940 (2)159 (2)
C9—Cl9···Cg1iii1.74 (1)3.53 (1)4.5317 (19)114 (1)
Symmetry codes: (i) x+1, y+1, z; (ii) x+1/2, y+1, z; (iii) x, y+3/2, z+1/2.
 

Acknowledgements

This work has been supported by the Kosygin State University of Russia, N. D. Zelinsky Institute of Organic Chemistry, Russian State Agrarian University–Moscow Timiryazev Agricultural Academy, Erciyes University (Türkiye), Baku State University (Azerbaijan), and Azerbaijan Medical University. The authors' contributions are as follows. Conceptualization, FIG, MA, and ANB; synthesis, KAA and SMG; X-ray analysis, AMP and FSA; writing (review and editing of the manuscript), FIG, KIH, and MA; funding acquisition, FSA and KIH; supervision, FIG, MA, and ANB.

References

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