research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

Synthesis and structure of a 1:1 cocrystal of N,N′-bis­­(pyridin-3-ylmeth­yl)pyromellitic di­imide and naphthalene-2,6-di­carb­­oxy­lic acid

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aUniversity of Venda, P Bag X5050, Thohoyandou, 0950, South Africa
*Correspondence e-mail: [email protected]

Edited by W. T. A. Harrison, University of Aberdeen, United Kingdom (Received 14 May 2026; accepted 11 June 2026; online 23 June 2026)

In the title cocrystal, C22H14N4O4·C12H8O4, both components are completed by crystallographic inversion symmetry and the dihedral angle between the central fused ring system and the pendant pyridine ring is 66.21 (5)°. In the extended structure, the components are linked by O—H⋯N hydrogen bonds, generating [001] chains, and the packing is consolidated by ππ stacking and C—H⋯O inter­actions.

1. Chemical context

N,N′-Bis(pyridin-3-ylmeth­yl)pyromellitic di­imide, C22H14N4O4, (Lig1) consists of a pyromellitic di­imide core linked to meta-substituted pyridyl groups via –CH2– linkages. These rotatable linkages impart conformational flexibility, allowing Lig1 to adopt ZC- and ZT- modes, where Z denotes an anti orientation of the pyridyl rings, while C (cis) and T (trans) describe the relative positions of the pyridyl nitro­gen atoms (Yan et al., 2010View full citation). The pyromellitic di­imide core further promotes ππ stacking inter­actions, contributing to supra­molecular assembly. Owing to its semi-rigid nature, Lig1 has been widely employed in the construction of metal–organic frameworks (MOFs) exhibiting diverse topologies, with potential applications in gas sorption (Li et al., 2012View full citation) and fluorescence (Huang et al., 2020View full citation; Li et al., 2018View full citation).

Deprotonated naphthalene di­carb­oxy­lic acid (C12H8O4; NDC) ligands are also widely used to prepare MOFs with potential applications in gas storage, gas separation, luminescence and catalysis (Gangu et al., 2017View full citation). Their aromatic ring system allows for increased ππ stacking inter­actions, enhancing supra­molecular recognition and enabling the formation of complex polymer networks.

[Scheme 1]

The aim of this work was to prepare a zinc mixed-ligand MOF containing Lig1 and NDC. However, single-crystal X-ray diffraction (SCXRD) revealed that a 1:1 cocrystal of Lig1 and NDC, (I), had formed from the solvothermal reaction and we now describe its structure.

2. Structural commentary

Compound (I) crystallizes in the triclinic space group PMathematical equation with half a mol­ecule of Lig1 and half a mol­ecule of NDC in the asymmetric unit (Fig. 1[link]). Both complete mol­ecules are generated by crystallographic inversion centres at (1/2, 1/2, 0) and (1, 1/2, 1) for the asymmetric atoms of Lig1 and NDC, respectively. The Lig1 mol­ecule adopts a ZT- mode and the dihedral angle between the central fused ring system and the pendant pyridine ring is 66.21 (5)°.

[Figure 1]
Figure 1
The mol­ecular structure of (I) with displacement ellipsoids drawn at the 70% probability level. [Symmetry codes: (i) 2 − x, 1 − y, 2 − z; (ii) 1 − x, 1 − y, −z].

3. Supra­molecular features

In the extended structure of (I), the NDC mol­ecule links to Lig1 via an O1—H1⋯N9 hydrogen bond between the carb­oxy­lic acid group of NDC and the py-N of Lig1, and a secondary inter­action between the Ar-H atom of Lig 1 and the C=O group of the NDC mol­ecule (C10—H10⋯O3). These inter­actions result in extended chains of alternating Lig1 and NDC mol­ecules running along the crystallographic c-axis direction (Table 1[link], Fig. 2[link]).

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯N9 0.95 (1) 1.64 (1) 2.5806 (13) 172 (2)
C15—H15A⋯O3i 0.99 2.56 3.4073 (14) 143
C11—H11⋯O23ii 0.95 2.51 3.2402 (15) 134
C10—H10⋯O3iii 0.95 2.64 3.2414 (15) 122
C11—H11⋯O3iii 0.95 2.62 3.2207 (15) 122
Symmetry codes: (i) Mathematical equation; (ii) Mathematical equation; (iii) Mathematical equation.
[Figure 2]
Figure 2
The packing of (I) viewed down the b-axis direction.

The chains stack in the ac plane in an offset arrangement facilitated by ππ stacking inter­actions [centroid-to-centroid distance = 3.767 (1) Å] between the pyridyl moieties of Lig1 of adjacent chains, as well as ππ inter­actions [centroid-to-centroid distance = 3.761 (1) Å] between the pyromellitic moiety of Lig1 and the naphthalene moiety of NDC of adjacent chains. Additionally, the chains inter­act with neighboring chains via C—H⋯O inter­actions in the ac plane (C15—H15A⋯O3) as well as in the b-axis direction (C11—H11⋯O23) (Fig. 2[link]).

4. Hirshfeld surface analysis

To further qu­antify the nature and relative contributions of inter­molecular inter­actions within the crystal structure of (I), two-dimensional fingerprint plots were generated using CrystalExplorer (Spackman et al. 2021View full citation). The Hirshfeld surface was constructed from a hydrogen-bonded unit comprising one NDC and one Lig1 mol­ecule. The breakdown of inter­molecular contacts and their percentage contributions to the total Hirshfeld surface are presented in Fig. 3[link]. The contributions follow the order O⋯H/H⋯O (32%) > H⋯H (29%) > C⋯C (14%) > C⋯H/H⋯C (13%) > N⋯H/H⋯N (5%) > C⋯O/O⋯C (2.9%). Although O⋯H/H⋯O inter­actions make the largest contribution to the Hirshfeld surface, these contacts are relatively long, with the closest atom–atom distance of approximately 2.3 Å, and are mainly associated with weaker C—H⋯O inter­actions. H⋯H contacts also contribute significantly, indicating that van der Waals inter­actions play an important role in consolidating the crystal structure. The C⋯C and C⋯H inter­actions contribute 14% and 13%, respectively, and can be attributed to ππ stacking and C-H⋯π inter­actions. N⋯H/H⋯N inter­actions, associated with O—H⋯N hydrogen bonding, contribute a smaller proportion (5%) but represent the shortest inter­molecular contacts, with a closest atom–atom distance of approximately 1.6 Å.

[Figure 3]
Figure 3
Two-dimensional fingerprint plots for (I) showing the various contributions to the Hirshfeld surface.

5. Thermogravimetric analysis (TGA) and powder X-ray diffraction (PXRD)

PXRD analysis was performed to assess the bulk phase purity of (I). A comparison of the PXRD pattern of the as-synthesized sample with the simulated pattern of (I) shows good agreement, which indicates phase purity of the sample (Fig. 4[link]). The TGA curve shows that the cocrystal decomposes at 290 °C (Fig. 5[link]).

[Figure 4]
Figure 4
Experimental PXRD pattern of (I) (red) overlaid with the simulated pattern generated from SCXRD data (black), confirming phase purity.
[Figure 5]
Figure 5
TGA curve of (I). Decomposition starts at 290 °C.

6. Database survey

A search of the Cambridge Structural Database (CSD) (Groom et al., 2016View full citation) showed that Lig1 has been used mostly in the preparation of coordination complexes. Of the 20 crystal structures deposited Co [DIBBAU, DIBBEY, DIBBIC (Li et al., 2018View full citation), OWEYEV (Li et al., 2011View full citation)], Zn [OWEYUL (Li et al., 2011View full citation), FISCEQ (Lü et al. 2005bView full citation), PALYIL (Lü et al. 2005aView full citation)], Cd [FISCAM (Lü et al. 2005bView full citation), PADHOT (Chai et al. 2010View full citation), PALYUX (Lü et al. 2005aView full citation), ZAVQIZ (Li et al., 2017View full citation), ZAXSOI (Li et al., 2012View full citation)], Ag (QAHBEI, QAHBIM; Yan et al., 2011View full citation), Hg [HUHZUI (Huang et al., 2020View full citation), PEVYUL (Li et al., 2007View full citation)], Ni (HUJBAS; Huang et al., 2020View full citation) and Mn [OWEXOE (Li et al., 2011View full citation), ZAVQEV Li et al., 2017View full citation)] and one entry is a salt of protonated Lig1 and a perchlorate ion (FISBUF; Lü et al., 2005View full citationView full citation). The coordination complexes exhibit structural diversity, with some investigated for CO2 sorption (Li et al., 2012View full citation) and fluorescence properties (Huang et al., 2020View full citation; Li et al., 2018View full citation). A search on the CSD for NDC produced 683 coordination complexes containing NDC either by itself or in combination with other ligands. Additionally, there are 40 hits where NDC features in cocrystals or salts.

7. Synthesis and crystallization

Lig1 was synthesized according to a reported procedure (Li et al. 2009View full citation). Compound (I) crystallized from a solvothermal reaction of Lig1 (10 mg, 0.025 mmol), NDC (16 mg, 0.074 mmol), and Zn(NO3)2·6H2O (20 mg, 0.067 mmol) in 3 ml of N,N-di­methyl­formamide (DMF) at 373 K. Cream crystals of (I) formed after 3 days. The vial was then removed from the oven and washed with 2 ml of DMF.

8. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link]. C-bound H atoms were positioned (C—H = 0.95–0.99 Å) geometrically and refined as riding Uiso(H) = 1.2Ueq(C). The OH H atom was found in a difference map and refined with Uiso(H) = 1.5Ueq(O).

Table 2
Experimental details

Crystal data
Chemical formula C22H14N4O4·C12H8O4
Mr 614.55
Crystal system, space group Triclinic, PMathematical equation
Temperature (K) 130
a, b, c (Å) 6.9314 (2), 8.3554 (3), 12.5463 (4)
α, β, γ (°) 79.716 (1), 80.977 (1), 74.432 (1)
V3) 684.15 (4)
Z 1
Radiation type Mo Kα
μ (mm−1) 0.11
Crystal size (mm) 0.28 × 0.17 × 0.13
 
Data collection
Diffractometer BRUKER D8 QUEST
Absorption correction Multi-scan (SADABS; Krause et al., 2015View full citation)
Tmin, Tmax 0.650, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections 23721, 3391, 3048
Rint 0.040
(sin θ/λ)max−1) 0.667
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.039, 0.107, 1.10
No. of reflections 3391
No. of parameters 211
No. of restraints 1
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.36, −0.28
Computer programs: APEX4 and SAINT (Bruker, 2022View full citation), SHELXT (Sheldrick, 2015aView full citation), SHELXL2019/3 (Sheldrick, 2015bView full citation) and X-SEED (Barbour, 2020View full citation).

Supporting information


Computing details top

N,N'-Bis(pyridin-3-ylmethyl)pyromellitic diimide–naphthalene-2,6-dicarboxylic acid (1/1) top
Crystal data top
C22H14N4O4·C12H8O4Z = 1
Mr = 614.55F(000) = 318
Triclinic, P1Dx = 1.492 Mg m3
a = 6.9314 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.3554 (3) ÅCell parameters from 9965 reflections
c = 12.5463 (4) Åθ = 2.6–28.3°
α = 79.716 (1)°µ = 0.11 mm1
β = 80.977 (1)°T = 130 K
γ = 74.432 (1)°Block, yellow
V = 684.15 (4) Å30.28 × 0.17 × 0.13 mm
Data collection top
BRUKER D8 QUEST
diffractometer
3391 independent reflections
Radiation source: sealed tube3048 reflections with I > 2σ(I)
Detector resolution: 7.39 pixels mm-1Rint = 0.040
ω scansθmax = 28.3°, θmin = 2.6°
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
h = 98
Tmin = 0.650, Tmax = 0.746k = 1111
23721 measured reflectionsl = 1616
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.107 w = 1/[σ2(Fo2) + (0.0491P)2 + 0.3031P]
where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
3391 reflectionsΔρmax = 0.36 e Å3
211 parametersΔρmin = 0.28 e Å3
1 restraint
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.94933 (14)0.56834 (11)0.61477 (7)0.0239 (2)
H10.887 (2)0.6401 (17)0.5555 (9)0.036*
O180.26446 (15)0.92395 (11)0.09152 (7)0.0272 (2)
O230.50906 (14)0.42909 (11)0.30621 (7)0.0243 (2)
O30.94674 (14)0.81605 (11)0.66050 (7)0.0233 (2)
N90.74937 (16)0.76234 (12)0.46376 (8)0.0198 (2)
N160.36780 (14)0.69532 (12)0.22228 (8)0.0174 (2)
C71.08872 (17)0.31773 (14)0.92125 (9)0.0174 (2)
H71.1396240.1993530.9342640.021*
C81.06660 (16)0.39725 (14)0.81661 (9)0.0171 (2)
H81.0982560.3334810.7578360.021*
C40.99645 (16)0.57470 (14)0.79612 (9)0.0161 (2)
C20.96390 (16)0.66531 (14)0.68329 (9)0.0175 (2)
C140.59674 (18)0.72163 (14)0.43038 (9)0.0199 (2)
H140.5700540.6156450.4593670.024*
C130.47578 (17)0.82771 (14)0.35519 (9)0.0170 (2)
C150.30468 (17)0.77764 (14)0.31994 (9)0.0188 (2)
H15B0.2524720.7004670.3799580.023*
H15A0.1938240.8788660.3051420.023*
C170.33909 (17)0.77633 (14)0.11648 (9)0.0182 (2)
C190.41928 (16)0.64345 (13)0.04451 (9)0.0161 (2)
C200.42361 (17)0.65689 (14)0.06757 (9)0.0173 (2)
H20A0.3732410.7600650.1118950.021*
C210.49260 (16)0.49242 (13)0.10978 (9)0.0161 (2)
C100.78669 (18)0.91129 (15)0.42350 (10)0.0203 (2)
H100.8935610.9408940.4480940.024*
C110.67585 (19)1.02447 (15)0.34729 (11)0.0239 (3)
H110.7075201.1288360.3189700.029*
C120.51751 (18)0.98197 (15)0.31325 (10)0.0221 (2)
H120.4380831.0577940.2615940.027*
C220.46261 (16)0.52553 (14)0.22495 (9)0.0171 (2)
C50.94801 (16)0.66816 (14)0.88063 (9)0.0168 (2)
H50.9034460.7869370.8657890.020*
C60.96400 (16)0.58878 (13)0.98974 (9)0.0157 (2)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0342 (5)0.0199 (4)0.0182 (4)0.0031 (3)0.0112 (3)0.0029 (3)
O180.0375 (5)0.0159 (4)0.0253 (4)0.0007 (4)0.0065 (4)0.0037 (3)
O230.0314 (5)0.0212 (4)0.0178 (4)0.0035 (3)0.0039 (3)0.0003 (3)
O30.0315 (5)0.0200 (4)0.0205 (4)0.0099 (3)0.0075 (3)0.0012 (3)
N90.0262 (5)0.0188 (5)0.0152 (4)0.0048 (4)0.0051 (4)0.0029 (3)
N160.0195 (4)0.0170 (4)0.0165 (4)0.0040 (3)0.0025 (3)0.0044 (3)
C70.0182 (5)0.0158 (5)0.0183 (5)0.0031 (4)0.0025 (4)0.0036 (4)
C80.0175 (5)0.0184 (5)0.0160 (5)0.0041 (4)0.0015 (4)0.0045 (4)
C40.0147 (5)0.0187 (5)0.0152 (5)0.0047 (4)0.0029 (4)0.0015 (4)
C20.0156 (5)0.0204 (5)0.0168 (5)0.0048 (4)0.0027 (4)0.0021 (4)
C140.0280 (6)0.0173 (5)0.0154 (5)0.0077 (4)0.0035 (4)0.0013 (4)
C130.0189 (5)0.0170 (5)0.0149 (5)0.0033 (4)0.0004 (4)0.0050 (4)
C150.0188 (5)0.0206 (5)0.0179 (5)0.0047 (4)0.0003 (4)0.0067 (4)
C170.0194 (5)0.0171 (5)0.0187 (5)0.0043 (4)0.0030 (4)0.0039 (4)
C190.0160 (5)0.0143 (5)0.0184 (5)0.0041 (4)0.0024 (4)0.0026 (4)
C200.0188 (5)0.0145 (5)0.0182 (5)0.0038 (4)0.0035 (4)0.0008 (4)
C210.0162 (5)0.0162 (5)0.0166 (5)0.0053 (4)0.0026 (4)0.0015 (4)
C100.0217 (5)0.0205 (5)0.0203 (5)0.0062 (4)0.0028 (4)0.0051 (4)
C110.0266 (6)0.0168 (5)0.0289 (6)0.0074 (4)0.0060 (5)0.0008 (4)
C120.0229 (6)0.0177 (5)0.0243 (6)0.0032 (4)0.0059 (4)0.0007 (4)
C220.0169 (5)0.0167 (5)0.0183 (5)0.0049 (4)0.0020 (4)0.0032 (4)
C50.0173 (5)0.0161 (5)0.0171 (5)0.0041 (4)0.0033 (4)0.0014 (4)
C60.0141 (5)0.0167 (5)0.0167 (5)0.0036 (4)0.0023 (4)0.0030 (4)
Geometric parameters (Å, º) top
O1—C21.3135 (14)C13—C121.3900 (16)
O1—H10.9501 (10)C13—C151.5080 (15)
O18—C171.2073 (14)C15—H15B0.9900
O23—C221.2094 (14)C15—H15A0.9900
O3—C21.2182 (14)C17—C191.4921 (15)
N9—C101.3335 (15)C19—C201.3867 (15)
N9—C141.3391 (15)C19—C211.3924 (15)
N16—C221.3911 (14)C20—C21ii1.3872 (15)
N16—C171.3963 (14)C20—H20A0.9500
N16—C151.4619 (14)C21—C221.4917 (15)
C7—C81.3732 (15)C10—C111.3843 (17)
C7—C6i1.4216 (15)C10—H100.9500
C7—H70.9500C11—C121.3870 (17)
C8—C41.4201 (15)C11—H110.9500
C8—H80.9500C12—H120.9500
C4—C51.3748 (15)C5—C61.4179 (15)
C4—C21.5013 (15)C5—H50.9500
C14—C131.3889 (16)C6—C6i1.422 (2)
C14—H140.9500
C2—O1—H1106.8 (11)O18—C17—C19128.73 (11)
C10—N9—C14118.72 (10)N16—C17—C19105.69 (9)
C22—N16—C17112.33 (9)C20—C19—C21122.87 (10)
C22—N16—C15123.31 (9)C20—C19—C17129.04 (10)
C17—N16—C15124.37 (9)C21—C19—C17108.09 (10)
C8—C7—C6i120.49 (10)C19—C20—C21ii114.62 (10)
C8—C7—H7119.8C19—C20—H20A122.7
C6i—C7—H7119.8C21ii—C20—H20A122.7
C7—C8—C4120.09 (10)C20ii—C21—C19122.52 (10)
C7—C8—H8120.0C20ii—C21—C22129.54 (10)
C4—C8—H8120.0C19—C21—C22107.95 (9)
C5—C4—C8120.49 (10)N9—C10—C11122.60 (11)
C5—C4—C2117.92 (10)N9—C10—H10118.7
C8—C4—C2121.54 (10)C11—C10—H10118.7
O3—C2—O1124.33 (10)C10—C11—C12118.46 (11)
O3—C2—C4121.82 (10)C10—C11—H11120.8
O1—C2—C4113.81 (10)C12—C11—H11120.8
N9—C14—C13122.82 (11)C11—C12—C13119.57 (11)
N9—C14—H14118.6C11—C12—H12120.2
C13—C14—H14118.6C13—C12—H12120.2
C14—C13—C12117.83 (11)O23—C22—N16125.12 (10)
C14—C13—C15121.26 (10)O23—C22—C21128.96 (10)
C12—C13—C15120.91 (10)N16—C22—C21105.93 (9)
N16—C15—C13111.95 (9)C4—C5—C6120.56 (10)
N16—C15—H15B109.2C4—C5—H5119.7
C13—C15—H15B109.2C6—C5—H5119.7
N16—C15—H15A109.2C5—C6—C7i121.66 (10)
C13—C15—H15A109.2C5—C6—C6i118.99 (12)
H15B—C15—H15A107.9C7i—C6—C6i119.35 (12)
O18—C17—N16125.59 (11)
C6i—C7—C8—C41.93 (17)C17—C19—C20—C21ii179.30 (11)
C7—C8—C4—C50.73 (17)C20—C19—C21—C20ii0.13 (19)
C7—C8—C4—C2177.93 (10)C17—C19—C21—C20ii179.46 (10)
C5—C4—C2—O318.94 (16)C20—C19—C21—C22179.81 (10)
C8—C4—C2—O3163.79 (11)C17—C19—C21—C220.48 (12)
C5—C4—C2—O1158.88 (10)C14—N9—C10—C111.02 (18)
C8—C4—C2—O118.39 (15)N9—C10—C11—C121.23 (19)
C10—N9—C14—C130.25 (17)C10—C11—C12—C130.65 (18)
N9—C14—C13—C120.28 (17)C14—C13—C12—C110.06 (17)
N9—C14—C13—C15179.75 (10)C15—C13—C12—C11179.98 (11)
C22—N16—C15—C1383.09 (13)C17—N16—C22—O23177.96 (11)
C17—N16—C15—C1397.45 (12)C15—N16—C22—O232.52 (18)
C14—C13—C15—N1692.23 (12)C17—N16—C22—C211.83 (12)
C12—C13—C15—N1687.73 (13)C15—N16—C22—C21177.69 (9)
C22—N16—C17—O18178.33 (12)C20ii—C21—C22—O231.7 (2)
C15—N16—C17—O182.15 (19)C19—C21—C22—O23178.40 (12)
C22—N16—C17—C191.54 (12)C20ii—C21—C22—N16178.55 (11)
C15—N16—C17—C19177.97 (10)C19—C21—C22—N161.39 (12)
O18—C17—C19—C201.4 (2)C8—C4—C5—C61.07 (16)
N16—C17—C19—C20178.69 (11)C2—C4—C5—C6176.22 (10)
O18—C17—C19—C21179.28 (12)C4—C5—C6—C7i178.81 (10)
N16—C17—C19—C210.59 (12)C4—C5—C6—C6i1.64 (19)
C21—C19—C20—C21ii0.12 (18)
Symmetry codes: (i) x+2, y+1, z+2; (ii) x+1, y+1, z.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1—H1···N90.95 (1)1.64 (1)2.5806 (13)172 (2)
C15—H15A···O3iii0.992.563.4073 (14)143
C11—H11···O23iv0.952.513.2402 (15)134
C10—H10···O3v0.952.643.2414 (15)122
C11—H11···O3v0.952.623.2207 (15)122
Symmetry codes: (iii) x+1, y+2, z+1; (iv) x, y+1, z; (v) x+2, y+2, z+1.
 

Acknowledgements

EB thanks the National Research Foundation of South Africa for financial support. LM thanks the NRF and SASOL Foundation for a bursary.

Funding information

Funding for this research was provided by: National Research Foundation of South Africa (grant Nos. 129759, 138178).

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