Figure 6
Backbone r.m.s.d. of MbnF–MbnA during the MD simulation. All graphs are plotted as r.m.s.d. (nm) against simulation time (ns) and all graphs are scaled from 0 to 0.3 nm, except for that for MbnA, which is scaled from 0 to 1.2 nm. From top to bottom and from left to right are the r.m.s.d. for full MbnF, MbnA (the region not docked into the MbnF channel underwent large conformational changes), the helix-bundle domain, the β-sandwich motif adjacent to the adenine moiety of FAD and the β-hotdog motif adjacent to the alloxazine ring of FAD. |