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Figure 3
AlphaFold3 model of Mannitou Fab and confidence assessment. (a) Predicted 3D structure of Mannitou Fab using AlphaFold3. The model is colour-coded based on predicted local distance difference test (pLDDT) scores, where blue represents high confidence (>90), cyan indicates medium confidence (70–90) and orange/yellow highlights regions with lower confidence (<70), typically corresponding to flexible or disordered areas. (b) pLDDT scores plotted for each residue in Mannitou Fab (sequence as shown in Table 1[link]) showing high confidence for most regions, with occasional dips in flexible or disordered loops. (c) Predicted aligned error (PAE) matrix illustrating the relative confidence in the spatial alignment of residue pairs. Dark green indicates low alignment error (high confidence), while lighter shades signify areas of greater positional uncertainty.

Journal logoSTRUCTURAL BIOLOGY
COMMUNICATIONS
ISSN: 2053-230X
Volume 81| Part 1| January 2025| Pages 19-29
https://doi.org/10.1107/S2053230X24012159
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