PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning

Costa-Gomes, B.; Greer, J.; Juraschko, N.; Parkhurst, J.; Mirecka, J.; Famili, M.; Rangel-Smith, C.; Strickson, O.; Lowe, A.; Basham, M.; Burnley, T.

doi:10.1107/S2053230X25007575

Acta Crystallographica Section F
Acta Crystallographica
Section F STRUCTURAL BIOLOGY COMMUNICATIONS

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Figure 4
Flowchart of the CAKED pipeline. The green oval corresponds to the inputs, the orange rectangle to the access type, purple rectangles to the implemented packages and the yellow oval to the output. CAKED is a software package that decouples data loading and processing from the analysis, and represents the data in a format suitable for machine learning. CAKED extends the standard PyTorch Dataset and DataLoader primitives, and is itself extendable for more specific data sets and applications.

STRUCTURAL BIOLOGY
COMMUNICATIONS

ISSN: 2053-230X

Volume 81| Part 10| October 2025| Pages 441-450

https://doi.org/10.1107/S2053230X25007575

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