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Figure 3
End-to-end benchmark workflow executed on TOPAZ, represented as auditable agent execution from raw event data and a starting CIF to a validated publication-facing CIF. User inputs (yellow) initiate execution. Agent states and tool-grounded actions (blue) advance through reduction, refinement and validation under explicit authorization points. Verification gates enforce fail-closed checks (for example, FindUB success, density mismatch and checkCIF alerts) and trigger corrective loops when criteria are not met. Intermediate configurations, tool outputs and validation outcomes are logged as artifacts to support audit and controlled replay.

Journal logoJOURNAL OF
APPLIED
CRYSTALLOGRAPHY
ISSN: 1600-5767
Volume 59| Part 4| August 2026|
https://doi.org/10.1107/S1600576726004474
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