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Figure 2
Benchmark of Namdinator with 39 deposited cryo-EM structures and maps. Plot of global quality parameters; Δclash score (red bars) and ΔCC (black bars). The individual EMDB entry ID's are listed along the x axis. The delta clash score is calculated by subtracting the clash score of the final output model from Namdinator (last_frame_rsr.pdb), from the clash score of the input model (the deposited model). The delta CC value is calculated by subtracting the cross-correlation coefficient between input model and map from the cross-correlation coefficient between final model and map (both from CC_mask in phenix.model_map_cc). In both cases a positive value indicates that the output from Namdinator was improved compared with the input. The green shading indicates model improvement through Namdinator, the pink shading indicates model deterioration, and the blue shading a comparable quality model (±5 clash or ±0.01 CC).

IUCrJ
Volume 6| Part 4| July 2019| Pages 526-531
ISSN: 2052-2525
https://doi.org/10.1107/S2052252519007619