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The amino group of 2-amino-5-(4-halophenyl)-1,3,4-chalcogenadiazole has been replaced with bromo/iodo substituents to obtain a library of four compositionally related compounds. These are 2-iodo-5-(4-iodophenyl)-1,3,4-thiadiazole, C
8H
4I
2N
2S, 2-bromo-5-(4-bromophenyl)-1,3,4-selenadiazole, C
8H
4Br
2N
2Se, 2-bromo-5-(4-iodophenyl)-1,3,4-selenadiazole, C
8H
4BrIN
2Se, and 2-bromo-5-(4-iodophenyl)-1,3,4-thiadiazole, C
8H
4BrIN
2S. All were isostructural and contained bifurcated Ch
N (Ch is chalcogen) and
XX (
X is halogen) interactions forming a zigzag packing motif. The noncovalent Ch
N interaction between the chalcogen-bond donor and the best-acceptor N atom appeared preferentially instead of a possible halogen bond to the same N atom. Hirshfeld surface analysis and energy framework calculations showed that, collectively, a bifurcated chalcogen bond was stronger than halogen bonding and this is more structurally influential in this system.
Supporting information
CCDC references: 2202927; 2202928; 2202931; 2202932
Data collection: CrysAlis PRO (Rigaku OD, 2020) for T1, T4; CrysAlis PRO 1.171.41.76a (Rigaku OD, 2020) for T2; CrysAlis PRO 1.171.40.84a (Rigaku OD, 2020) for T3. Cell refinement: CrysAlis PRO (Rigaku OD, 2020) for T1, T4; CrysAlis PRO 1.171.41.76a (Rigaku OD, 2020) for T2; CrysAlis PRO 1.171.40.84a (Rigaku OD, 2020) for T3. Data reduction: CrysAlis PRO (Rigaku OD, 2020) for T1, T4; CrysAlis PRO 1.171.41.76a (Rigaku OD, 2020) for T2; CrysAlis PRO 1.171.40.84a (Rigaku OD, 2020) for T3. Program(s) used to solve structure: SHELXT2018 (Sheldrick, 2015a) for T1; SHELXT (Sheldrick, 2015a) for T2, T3, T4. For all structures, program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).
2-Iodo-5-(4-iodophenyl)-1,3,4-thiadiazole (T1)
top
Crystal data top
C8H4I2N2S | Dx = 2.608 Mg m−3 |
Mr = 413.99 | Cu Kα radiation, λ = 1.54184 Å |
Orthorhombic, Pbca | Cell parameters from 5508 reflections |
a = 11.0392 (2) Å | θ = 3.8–69.0° |
b = 8.1756 (2) Å | µ = 48.34 mm−1 |
c = 23.3673 (4) Å | T = 293 K |
V = 2108.95 (7) Å3 | Block, colourless |
Z = 8 | 0.07 × 0.05 × 0.03 mm |
F(000) = 1504 | |
Data collection top
Rigaku XtaLAB Synergy Custom diffractometer with a HyPix-Arc 150° detector | 1942 independent reflections |
Radiation source: Rotating-anode X-ray tube, Rigaku (Cu) X-ray Source | 1753 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.024 |
Detector resolution: 10.0000 pixels mm-1 | θmax = 69.1°, θmin = 3.8° |
ω scans | h = −11→13 |
Absorption correction: gaussian (CrysAlis PRO; Rigaku OD, 2020) | k = −8→9 |
Tmin = 0.209, Tmax = 0.522 | l = −24→28 |
8336 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.026 | H-atom parameters constrained |
wR(F2) = 0.071 | w = 1/[σ2(Fo2) + (0.0388P)2 + 4.6153P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
1942 reflections | Δρmax = 1.33 e Å−3 |
118 parameters | Δρmin = −1.22 e Å−3 |
0 restraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.6455 (4) | 0.4015 (5) | 0.40675 (18) | 0.0196 (9) | |
C2 | 0.5284 (4) | 0.4540 (6) | 0.39544 (19) | 0.0209 (9) | |
H2 | 0.465059 | 0.421230 | 0.419049 | 0.025* | |
C3 | 0.5054 (4) | 0.5556 (5) | 0.34887 (18) | 0.0207 (9) | |
H3 | 0.427089 | 0.591795 | 0.341467 | 0.025* | |
C4 | 0.6006 (4) | 0.6024 (5) | 0.31353 (18) | 0.0218 (9) | |
C5 | 0.7186 (4) | 0.5514 (5) | 0.32447 (19) | 0.0245 (10) | |
H5 | 0.782009 | 0.584936 | 0.301019 | 0.029* | |
C6 | 0.7402 (4) | 0.4498 (6) | 0.37097 (18) | 0.0219 (9) | |
H6 | 0.818500 | 0.413535 | 0.378344 | 0.026* | |
C7 | 0.6712 (4) | 0.2974 (5) | 0.45654 (18) | 0.0205 (9) | |
N8 | 0.7801 (3) | 0.2525 (4) | 0.47101 (17) | 0.0242 (9) | |
N9 | 0.7827 (3) | 0.1583 (5) | 0.52011 (16) | 0.0243 (8) | |
C10 | 0.6745 (4) | 0.1372 (5) | 0.54045 (18) | 0.0212 (9) | |
S11 | 0.55940 (10) | 0.22850 (15) | 0.50283 (5) | 0.0246 (3) | |
I12 | 0.64084 (3) | 0.00912 (3) | 0.61590 (2) | 0.02546 (12) | |
I13 | 0.56375 (3) | 0.75148 (3) | 0.24272 (2) | 0.02576 (12) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.021 (2) | 0.018 (2) | 0.020 (2) | 0.0000 (17) | 0.0006 (17) | −0.0003 (18) |
C2 | 0.019 (2) | 0.020 (2) | 0.023 (2) | −0.0004 (18) | 0.0016 (18) | −0.0021 (18) |
C3 | 0.021 (2) | 0.020 (2) | 0.021 (2) | 0.0020 (18) | 0.0001 (18) | 0.0002 (18) |
C4 | 0.028 (2) | 0.0163 (19) | 0.021 (2) | 0.0016 (18) | 0.0005 (19) | −0.0001 (17) |
C5 | 0.027 (2) | 0.019 (2) | 0.027 (2) | −0.0020 (19) | 0.0067 (18) | −0.0058 (19) |
C6 | 0.021 (2) | 0.017 (2) | 0.028 (2) | −0.0010 (18) | 0.0026 (19) | −0.0052 (18) |
C7 | 0.022 (2) | 0.019 (2) | 0.020 (2) | −0.0014 (18) | −0.0009 (18) | 0.0002 (18) |
N8 | 0.021 (2) | 0.027 (2) | 0.0241 (19) | 0.0015 (16) | −0.0022 (15) | 0.0023 (16) |
N9 | 0.024 (2) | 0.027 (2) | 0.0223 (17) | 0.0037 (17) | −0.0021 (16) | 0.0015 (16) |
C10 | 0.022 (2) | 0.018 (2) | 0.024 (2) | 0.0003 (18) | −0.0040 (19) | −0.0023 (18) |
S11 | 0.0187 (6) | 0.0283 (6) | 0.0267 (6) | 0.0013 (4) | −0.0004 (4) | 0.0053 (5) |
I12 | 0.0279 (2) | 0.02557 (18) | 0.02293 (18) | 0.00177 (11) | −0.00234 (11) | 0.00194 (11) |
I13 | 0.0349 (2) | 0.02059 (18) | 0.02173 (18) | −0.00176 (11) | −0.00195 (11) | 0.00162 (11) |
Geometric parameters (Å, º) top
C1—C2 | 1.388 (6) | C5—H5 | 0.9300 |
C1—C6 | 1.395 (6) | C5—C6 | 1.389 (6) |
C1—C7 | 1.469 (6) | C6—H6 | 0.9300 |
C2—H2 | 0.9300 | C7—N8 | 1.302 (6) |
C2—C3 | 1.392 (6) | C7—S11 | 1.735 (4) |
C3—H3 | 0.9300 | N8—N9 | 1.382 (5) |
C3—C4 | 1.390 (6) | N9—C10 | 1.297 (6) |
C4—C5 | 1.391 (6) | C10—S11 | 1.716 (4) |
C4—I13 | 2.095 (4) | C10—I12 | 2.084 (4) |
| | | |
C2—C1—C6 | 119.7 (4) | C6—C5—H5 | 120.5 |
C2—C1—C7 | 120.6 (4) | C1—C6—H6 | 119.7 |
C6—C1—C7 | 119.6 (4) | C5—C6—C1 | 120.7 (4) |
C1—C2—H2 | 119.9 | C5—C6—H6 | 119.7 |
C1—C2—C3 | 120.2 (4) | C1—C7—S11 | 123.0 (3) |
C3—C2—H2 | 119.9 | N8—C7—C1 | 123.2 (4) |
C2—C3—H3 | 120.3 | N8—C7—S11 | 113.8 (3) |
C4—C3—C2 | 119.4 (4) | C7—N8—N9 | 113.1 (4) |
C4—C3—H3 | 120.3 | C10—N9—N8 | 111.1 (3) |
C3—C4—C5 | 121.1 (4) | N9—C10—S11 | 115.9 (3) |
C3—C4—I13 | 118.8 (3) | N9—C10—I12 | 122.8 (3) |
C5—C4—I13 | 120.1 (3) | S11—C10—I12 | 121.3 (2) |
C4—C5—H5 | 120.5 | C10—S11—C7 | 86.2 (2) |
C6—C5—C4 | 118.9 (4) | | |
| | | |
C1—C2—C3—C4 | 0.7 (7) | C6—C1—C7—S11 | −179.0 (3) |
C1—C7—N8—N9 | 178.4 (4) | C7—C1—C2—C3 | 178.6 (4) |
C1—C7—S11—C10 | −178.5 (4) | C7—C1—C6—C5 | −178.4 (4) |
C2—C1—C6—C5 | 0.7 (7) | C7—N8—N9—C10 | −0.1 (5) |
C2—C1—C7—N8 | −175.9 (4) | N8—C7—S11—C10 | −0.4 (4) |
C2—C1—C7—S11 | 1.9 (6) | N8—N9—C10—S11 | −0.2 (5) |
C2—C3—C4—C5 | −1.0 (6) | N8—N9—C10—I12 | −177.7 (3) |
C2—C3—C4—I13 | 178.8 (3) | N9—C10—S11—C7 | 0.3 (4) |
C3—C4—C5—C6 | 1.2 (6) | S11—C7—N8—N9 | 0.4 (5) |
C4—C5—C6—C1 | −1.0 (7) | I12—C10—S11—C7 | 177.9 (3) |
C6—C1—C2—C3 | −0.5 (7) | I13—C4—C5—C6 | −178.6 (3) |
C6—C1—C7—N8 | 3.2 (7) | | |
2-Bromo-5-(4-bromophenyl)-1,3,4-selenadiazole (T2)
top
Crystal data top
C8H4Br2N2Se | Dx = 2.407 Mg m−3 |
Mr = 366.91 | Cu Kα radiation, λ = 1.54184 Å |
Orthorhombic, Pbca | Cell parameters from 3007 reflections |
a = 11.1945 (5) Å | θ = 3.5–74.7° |
b = 7.1006 (3) Å | µ = 13.90 mm−1 |
c = 25.4725 (9) Å | T = 100 K |
V = 2024.74 (15) Å3 | Irregular, orange |
Z = 8 | 0.02 × 0.02 × 0.02 mm |
F(000) = 1360 | |
Data collection top
Rigaku XtaLAB Synergy Custom diffractometer with a HyPix-Arc 150° detector | 1965 independent reflections |
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source | 1709 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.037 |
Detector resolution: 10.0000 pixels mm-1 | θmax = 74.8°, θmin = 3.5° |
ω scans | h = −9→13 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2020) | k = −8→8 |
Tmin = 0.682, Tmax = 1.000 | l = −29→30 |
6457 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
wR(F2) = 0.109 | w = 1/[σ2(Fo2) + (0.0428P)2 + 15.9376P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
1965 reflections | Δρmax = 1.95 e Å−3 |
118 parameters | Δρmin = −1.46 e Å−3 |
0 restraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.3302 (5) | 0.3834 (8) | 0.5943 (2) | 0.0221 (12) | |
C2 | 0.4462 (6) | 0.4100 (9) | 0.6138 (2) | 0.0281 (13) | |
H2 | 0.513177 | 0.382973 | 0.592141 | 0.034* | |
C3 | 0.4634 (7) | 0.4753 (9) | 0.6643 (3) | 0.0350 (15) | |
H3 | 0.541775 | 0.495041 | 0.677551 | 0.042* | |
C4 | 0.3654 (7) | 0.5113 (9) | 0.6952 (2) | 0.0329 (15) | |
C5 | 0.2498 (7) | 0.4874 (8) | 0.6768 (2) | 0.0316 (14) | |
H5 | 0.183353 | 0.515334 | 0.698698 | 0.038* | |
C6 | 0.2326 (6) | 0.4222 (8) | 0.6263 (2) | 0.0276 (13) | |
H6 | 0.153883 | 0.403931 | 0.613314 | 0.033* | |
C7 | 0.3101 (5) | 0.3151 (8) | 0.5401 (2) | 0.0180 (11) | |
N8 | 0.2045 (4) | 0.2908 (7) | 0.52118 (18) | 0.0227 (10) | |
N9 | 0.2012 (4) | 0.2252 (7) | 0.46988 (18) | 0.0227 (10) | |
C10 | 0.3064 (5) | 0.2028 (8) | 0.4508 (2) | 0.0211 (12) | |
Se11 | 0.43492 (5) | 0.25540 (9) | 0.49395 (2) | 0.02259 (19) | |
Br12 | 0.32759 (6) | 0.11997 (9) | 0.38120 (2) | 0.0301 (2) | |
Br13 | 0.39006 (10) | 0.60799 (12) | 0.76394 (3) | 0.0541 (3) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.033 (3) | 0.017 (3) | 0.016 (3) | 0.000 (2) | −0.001 (2) | 0.002 (2) |
C2 | 0.036 (3) | 0.030 (3) | 0.018 (3) | −0.008 (3) | −0.002 (3) | 0.009 (2) |
C3 | 0.048 (4) | 0.031 (3) | 0.026 (3) | −0.007 (3) | −0.010 (3) | 0.007 (3) |
C4 | 0.059 (4) | 0.026 (3) | 0.014 (3) | −0.003 (3) | −0.002 (3) | 0.004 (2) |
C5 | 0.053 (4) | 0.018 (3) | 0.023 (3) | 0.005 (3) | 0.008 (3) | 0.002 (3) |
C6 | 0.034 (3) | 0.020 (3) | 0.028 (3) | 0.004 (3) | 0.000 (3) | 0.002 (2) |
C7 | 0.017 (3) | 0.013 (2) | 0.024 (3) | 0.002 (2) | −0.001 (2) | 0.002 (2) |
N8 | 0.023 (2) | 0.027 (3) | 0.018 (2) | −0.002 (2) | 0.0004 (19) | 0.005 (2) |
N9 | 0.024 (2) | 0.024 (3) | 0.020 (2) | −0.003 (2) | −0.0022 (19) | 0.002 (2) |
C10 | 0.026 (3) | 0.017 (3) | 0.020 (3) | −0.003 (2) | 0.002 (2) | 0.001 (2) |
Se11 | 0.0167 (3) | 0.0242 (3) | 0.0269 (3) | −0.0007 (2) | 0.0013 (2) | −0.0020 (2) |
Br12 | 0.0405 (4) | 0.0285 (3) | 0.0213 (3) | −0.0041 (3) | 0.0050 (3) | −0.0039 (3) |
Br13 | 0.1013 (8) | 0.0407 (4) | 0.0205 (3) | −0.0056 (5) | −0.0081 (4) | −0.0012 (3) |
Geometric parameters (Å, º) top
C1—C2 | 1.403 (9) | C5—H5 | 0.9500 |
C1—C6 | 1.391 (9) | C5—C6 | 1.382 (8) |
C1—C7 | 1.479 (8) | C6—H6 | 0.9500 |
C2—H2 | 0.9500 | C7—N8 | 1.288 (7) |
C2—C3 | 1.383 (9) | C7—Se11 | 1.876 (5) |
C3—H3 | 0.9500 | N8—N9 | 1.388 (7) |
C3—C4 | 1.373 (10) | N9—C10 | 1.284 (7) |
C4—C5 | 1.387 (10) | C10—Se11 | 1.849 (6) |
C4—Br13 | 1.901 (6) | C10—Br12 | 1.882 (6) |
| | | |
C2—C1—C7 | 121.0 (5) | C6—C5—H5 | 120.5 |
C6—C1—C2 | 119.5 (5) | C1—C6—H6 | 119.9 |
C6—C1—C7 | 119.4 (5) | C5—C6—C1 | 120.2 (6) |
C1—C2—H2 | 119.9 | C5—C6—H6 | 119.9 |
C3—C2—C1 | 120.3 (6) | C1—C7—Se11 | 123.0 (4) |
C3—C2—H2 | 119.9 | N8—C7—C1 | 122.2 (5) |
C2—C3—H3 | 120.5 | N8—C7—Se11 | 114.7 (4) |
C4—C3—C2 | 119.0 (6) | C7—N8—N9 | 115.0 (5) |
C4—C3—H3 | 120.5 | C10—N9—N8 | 112.0 (5) |
C3—C4—C5 | 122.0 (6) | N9—C10—Se11 | 117.6 (4) |
C3—C4—Br13 | 118.6 (5) | N9—C10—Br12 | 120.7 (4) |
C5—C4—Br13 | 119.3 (5) | Se11—C10—Br12 | 121.7 (3) |
C4—C5—H5 | 120.5 | C10—Se11—C7 | 80.7 (2) |
C6—C5—C4 | 119.0 (6) | | |
| | | |
C1—C2—C3—C4 | 0.8 (9) | C6—C1—C7—Se11 | −179.2 (4) |
C1—C7—N8—N9 | −179.7 (5) | C7—C1—C2—C3 | 179.5 (5) |
C1—C7—Se11—C10 | −179.8 (5) | C7—C1—C6—C5 | −179.6 (5) |
C2—C1—C6—C5 | 0.3 (9) | C7—N8—N9—C10 | −0.6 (7) |
C2—C1—C7—N8 | −179.5 (5) | N8—C7—Se11—C10 | 0.6 (4) |
C2—C1—C7—Se11 | 1.0 (8) | N8—N9—C10—Se11 | 1.1 (6) |
C2—C3—C4—C5 | −1.2 (10) | N8—N9—C10—Br12 | −178.7 (4) |
C2—C3—C4—Br13 | −178.2 (5) | N9—C10—Se11—C7 | −1.0 (5) |
C3—C4—C5—C6 | 1.2 (9) | Se11—C7—N8—N9 | −0.2 (6) |
C4—C5—C6—C1 | −0.7 (9) | Br12—C10—Se11—C7 | 178.8 (4) |
C6—C1—C2—C3 | −0.3 (9) | Br13—C4—C5—C6 | 178.1 (4) |
C6—C1—C7—N8 | 0.3 (8) | | |
2-Bromo-5-(4-iodophenyl)-1,3,4-selenadiazole (T3)
top
Crystal data top
C8H4BrIN2Se | Dx = 2.638 Mg m−3 |
Mr = 413.90 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 7358 reflections |
a = 11.1735 (4) Å | θ = 2.4–33.0° |
b = 7.1222 (2) Å | µ = 10.36 mm−1 |
c = 26.1875 (8) Å | T = 100 K |
V = 2084.00 (11) Å3 | Plate, clear light yellow |
Z = 8 | 0.3 × 0.1 × 0.06 mm |
F(000) = 1504 | |
Data collection top
Rigaku XtaLAB Synergy Custom diffractometer with a HyPix-Arc 150° detector | 2055 independent reflections |
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Mo) X-ray Source | 1815 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.035 |
Detector resolution: 10.0000 pixels mm-1 | θmax = 26.0°, θmin = 2.4° |
ω scans | h = −13→13 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2020) | k = −7→8 |
Tmin = 0.338, Tmax = 1.000 | l = −32→32 |
12091 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H-atom parameters constrained |
wR(F2) = 0.070 | w = 1/[σ2(Fo2) + (0.030P)2 + 10.0022P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max = 0.001 |
2055 reflections | Δρmax = 2.00 e Å−3 |
118 parameters | Δρmin = −1.01 e Å−3 |
0 restraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.6730 (4) | 0.6139 (6) | 0.59069 (17) | 0.0149 (9) | |
C2 | 0.5578 (4) | 0.5876 (7) | 0.61022 (17) | 0.0196 (10) | |
H2 | 0.4902 | 0.6141 | 0.5894 | 0.023* | |
C3 | 0.5414 (5) | 0.5230 (7) | 0.65978 (18) | 0.0226 (10) | |
H3 | 0.4630 | 0.5045 | 0.6729 | 0.027* | |
C4 | 0.6408 (5) | 0.4859 (6) | 0.68987 (16) | 0.0195 (10) | |
C5 | 0.7557 (5) | 0.5112 (6) | 0.67115 (17) | 0.0213 (10) | |
H5 | 0.8227 | 0.4847 | 0.6923 | 0.026* | |
C6 | 0.7731 (4) | 0.5751 (6) | 0.62163 (17) | 0.0176 (10) | |
H6 | 0.8518 | 0.5925 | 0.6087 | 0.021* | |
C7 | 0.6914 (4) | 0.6814 (6) | 0.53853 (16) | 0.0122 (9) | |
N8 | 0.7974 (3) | 0.7053 (5) | 0.51957 (14) | 0.0171 (8) | |
N9 | 0.8006 (3) | 0.7683 (5) | 0.46942 (14) | 0.0184 (8) | |
C10 | 0.6957 (4) | 0.7927 (6) | 0.45060 (17) | 0.0151 (9) | |
Se11 | 0.56664 (4) | 0.74266 (7) | 0.49341 (2) | 0.01587 (12) | |
Br12 | 0.67471 (4) | 0.87353 (7) | 0.38316 (2) | 0.02129 (13) | |
I13 | 0.61637 (4) | 0.38409 (5) | 0.76407 (2) | 0.03129 (12) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.021 (2) | 0.009 (2) | 0.015 (2) | 0.0004 (18) | 0.0006 (17) | −0.0032 (17) |
C2 | 0.024 (2) | 0.020 (2) | 0.015 (2) | −0.001 (2) | 0.0017 (18) | −0.0052 (18) |
C3 | 0.032 (3) | 0.017 (2) | 0.018 (2) | −0.005 (2) | 0.0090 (19) | −0.005 (2) |
C4 | 0.037 (3) | 0.013 (2) | 0.009 (2) | −0.003 (2) | 0.0035 (18) | −0.0017 (18) |
C5 | 0.032 (3) | 0.014 (2) | 0.018 (2) | 0.002 (2) | −0.006 (2) | −0.006 (2) |
C6 | 0.021 (2) | 0.013 (2) | 0.019 (2) | 0.0007 (19) | −0.0012 (18) | −0.0013 (19) |
C7 | 0.010 (2) | 0.010 (2) | 0.017 (2) | 0.0010 (16) | −0.0019 (16) | −0.0065 (18) |
N8 | 0.022 (2) | 0.018 (2) | 0.0111 (18) | −0.0010 (16) | −0.0003 (15) | −0.0007 (15) |
N9 | 0.022 (2) | 0.019 (2) | 0.0140 (18) | −0.0021 (17) | 0.0018 (15) | −0.0007 (16) |
C10 | 0.021 (2) | 0.012 (2) | 0.012 (2) | −0.0014 (18) | −0.0026 (17) | −0.0018 (17) |
Se11 | 0.0099 (2) | 0.0196 (2) | 0.0181 (2) | −0.00013 (18) | −0.00108 (16) | 0.00323 (18) |
Br12 | 0.0272 (3) | 0.0214 (3) | 0.0153 (2) | −0.0024 (2) | −0.00289 (17) | 0.00333 (19) |
I13 | 0.0553 (3) | 0.0243 (2) | 0.01430 (18) | −0.00140 (16) | 0.00484 (14) | 0.00152 (13) |
Geometric parameters (Å, º) top
C1—C2 | 1.398 (7) | C5—H5 | 0.9500 |
C1—C6 | 1.408 (6) | C5—C6 | 1.388 (6) |
C1—C7 | 1.462 (6) | C6—H6 | 0.9500 |
C2—H2 | 0.9500 | C7—N8 | 1.295 (6) |
C2—C3 | 1.389 (7) | C7—Se11 | 1.879 (4) |
C3—H3 | 0.9500 | N8—N9 | 1.388 (5) |
C3—C4 | 1.387 (7) | N9—C10 | 1.284 (6) |
C4—C5 | 1.386 (7) | C10—Se11 | 1.861 (5) |
C4—I13 | 2.092 (4) | C10—Br12 | 1.872 (4) |
| | | |
C2—C1—C6 | 119.6 (4) | C6—C5—H5 | 119.9 |
C2—C1—C7 | 121.0 (4) | C1—C6—H6 | 120.3 |
C6—C1—C7 | 119.4 (4) | C5—C6—C1 | 119.4 (4) |
C1—C2—H2 | 119.7 | C5—C6—H6 | 120.3 |
C3—C2—C1 | 120.5 (5) | C1—C7—Se11 | 124.0 (3) |
C3—C2—H2 | 119.7 | N8—C7—C1 | 122.0 (4) |
C2—C3—H3 | 120.4 | N8—C7—Se11 | 114.0 (3) |
C4—C3—C2 | 119.2 (5) | C7—N8—N9 | 115.4 (4) |
C4—C3—H3 | 120.4 | C10—N9—N8 | 112.5 (4) |
C3—C4—I13 | 119.3 (3) | N9—C10—Se11 | 116.8 (3) |
C5—C4—C3 | 121.1 (4) | N9—C10—Br12 | 121.2 (3) |
C5—C4—I13 | 119.6 (4) | Se11—C10—Br12 | 122.0 (2) |
C4—C5—H5 | 119.9 | C10—Se11—C7 | 81.29 (19) |
C4—C5—C6 | 120.2 (4) | | |
| | | |
C1—C2—C3—C4 | 0.4 (7) | C6—C1—C7—Se11 | −178.9 (3) |
C1—C7—N8—N9 | 179.4 (4) | C7—C1—C2—C3 | 179.8 (4) |
C1—C7—Se11—C10 | −179.4 (4) | C7—C1—C6—C5 | 180.0 (4) |
C2—C1—C6—C5 | 0.0 (7) | C7—N8—N9—C10 | 0.3 (6) |
C2—C1—C7—N8 | −179.5 (4) | N8—C7—Se11—C10 | 1.1 (3) |
C2—C1—C7—Se11 | 1.1 (6) | N8—N9—C10—Se11 | 0.7 (5) |
C2—C3—C4—C5 | −0.4 (7) | N8—N9—C10—Br12 | −179.0 (3) |
C2—C3—C4—I13 | −178.9 (3) | N9—C10—Se11—C7 | −1.0 (4) |
C3—C4—C5—C6 | 0.2 (7) | Se11—C7—N8—N9 | −1.1 (5) |
C4—C5—C6—C1 | 0.0 (7) | Br12—C10—Se11—C7 | 178.7 (3) |
C6—C1—C2—C3 | −0.2 (7) | I13—C4—C5—C6 | 178.7 (3) |
C6—C1—C7—N8 | 0.6 (6) | | |
2-Bromo-5-(4-iodophenyl)-1,3,4-thiadiazole (T4)
top
Crystal data top
C8H4BrIN2S | Dx = 2.401 Mg m−3 |
Mr = 367.00 | Cu Kα radiation, λ = 1.54184 Å |
Orthorhombic, Pbca | Cell parameters from 5134 reflections |
a = 10.9919 (2) Å | θ = 3.3–70.6° |
b = 6.9945 (1) Å | µ = 30.95 mm−1 |
c = 26.4076 (4) Å | T = 293 K |
V = 2030.29 (6) Å3 | Plate, colourless |
Z = 8 | 0.05 × 0.04 × 0.01 mm |
F(000) = 1360 | |
Data collection top
Rigaku XtaLAB Synergy Custom diffractometer with a HyPix-Arc 150° detector | 1920 independent reflections |
Radiation source: Rotating-anode X-ray tube, Rigaku (Cu) X-ray Source | 1802 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.025 |
Detector resolution: 10.0000 pixels mm-1 | θmax = 70.7°, θmin = 3.4° |
ω scans | h = −13→9 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2020) | k = −8→7 |
Tmin = 0.373, Tmax = 1.000 | l = −27→31 |
7258 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.021 | H-atom parameters constrained |
wR(F2) = 0.052 | w = 1/[σ2(Fo2) + (0.0219P)2 + 2.6464P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.001 |
1920 reflections | Δρmax = 0.57 e Å−3 |
118 parameters | Δρmin = −0.67 e Å−3 |
0 restraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.6729 (3) | 0.3732 (4) | 0.40837 (11) | 0.0202 (6) | |
C2 | 0.5551 (3) | 0.4009 (4) | 0.38896 (11) | 0.0228 (7) | |
H2 | 0.487684 | 0.378054 | 0.409375 | 0.027* | |
C3 | 0.5392 (3) | 0.4619 (5) | 0.33964 (11) | 0.0252 (7) | |
H3 | 0.461242 | 0.482985 | 0.327092 | 0.030* | |
C4 | 0.6391 (3) | 0.4915 (5) | 0.30907 (11) | 0.0245 (7) | |
C5 | 0.7571 (3) | 0.4651 (5) | 0.32710 (11) | 0.0232 (6) | |
H5 | 0.823891 | 0.487009 | 0.306263 | 0.028* | |
C6 | 0.7730 (3) | 0.4053 (4) | 0.37681 (12) | 0.0217 (6) | |
H6 | 0.851192 | 0.386382 | 0.389268 | 0.026* | |
C7 | 0.6931 (3) | 0.3097 (5) | 0.46055 (11) | 0.0205 (6) | |
N8 | 0.8022 (2) | 0.2851 (4) | 0.47936 (9) | 0.0229 (6) | |
N9 | 0.8006 (2) | 0.2255 (4) | 0.52908 (9) | 0.0236 (6) | |
C10 | 0.6900 (3) | 0.2081 (5) | 0.54533 (11) | 0.0225 (6) | |
S11 | 0.57681 (6) | 0.25939 (12) | 0.50282 (3) | 0.02332 (17) | |
Br12 | 0.65699 (3) | 0.13399 (5) | 0.61220 (2) | 0.02781 (10) | |
I13 | 0.61471 (2) | 0.58780 (3) | 0.23455 (2) | 0.03153 (9) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0209 (14) | 0.0211 (16) | 0.0184 (15) | 0.0008 (12) | 0.0000 (12) | −0.0028 (11) |
C2 | 0.0190 (15) | 0.0291 (18) | 0.0204 (15) | 0.0019 (12) | −0.0010 (12) | −0.0040 (12) |
C3 | 0.0244 (15) | 0.0303 (18) | 0.0211 (14) | 0.0021 (14) | −0.0046 (13) | −0.0044 (13) |
C4 | 0.0322 (16) | 0.0261 (17) | 0.0152 (14) | 0.0011 (14) | −0.0025 (12) | −0.0021 (13) |
C5 | 0.0246 (14) | 0.0259 (17) | 0.0192 (14) | 0.0008 (13) | 0.0030 (12) | −0.0013 (13) |
C6 | 0.0202 (14) | 0.0236 (16) | 0.0214 (15) | −0.0017 (12) | −0.0003 (12) | −0.0004 (12) |
C7 | 0.0158 (13) | 0.0244 (16) | 0.0214 (14) | 0.0011 (13) | 0.0022 (11) | −0.0026 (12) |
N8 | 0.0170 (12) | 0.0342 (15) | 0.0175 (12) | 0.0005 (12) | 0.0000 (9) | −0.0004 (11) |
N9 | 0.0201 (12) | 0.0331 (15) | 0.0176 (12) | 0.0025 (12) | −0.0008 (10) | −0.0007 (11) |
C10 | 0.0221 (14) | 0.0267 (16) | 0.0185 (14) | 0.0021 (13) | −0.0008 (12) | 0.0010 (12) |
S11 | 0.0155 (3) | 0.0343 (4) | 0.0201 (3) | 0.0007 (3) | 0.0012 (3) | 0.0040 (3) |
Br12 | 0.02913 (18) | 0.0356 (2) | 0.01864 (17) | 0.00341 (15) | 0.00365 (13) | 0.00393 (13) |
I13 | 0.04468 (15) | 0.03386 (14) | 0.01605 (12) | 0.00057 (10) | −0.00390 (8) | 0.00102 (8) |
Geometric parameters (Å, º) top
C1—C2 | 1.407 (4) | C5—H5 | 0.9300 |
C1—C6 | 1.398 (4) | C5—C6 | 1.388 (4) |
C1—C7 | 1.465 (4) | C6—H6 | 0.9300 |
C2—H2 | 0.9300 | C7—N8 | 1.309 (4) |
C2—C3 | 1.382 (4) | C7—S11 | 1.733 (3) |
C3—H3 | 0.9300 | N8—N9 | 1.378 (3) |
C3—C4 | 1.379 (4) | N9—C10 | 1.295 (4) |
C4—C5 | 1.394 (4) | C10—S11 | 1.714 (3) |
C4—I13 | 2.097 (3) | C10—Br12 | 1.876 (3) |
| | | |
C2—C1—C7 | 121.6 (3) | C6—C5—H5 | 120.7 |
C6—C1—C2 | 119.0 (3) | C1—C6—H6 | 119.6 |
C6—C1—C7 | 119.4 (3) | C5—C6—C1 | 120.9 (3) |
C1—C2—H2 | 119.9 | C5—C6—H6 | 119.6 |
C3—C2—C1 | 120.2 (3) | C1—C7—S11 | 123.8 (2) |
C3—C2—H2 | 119.9 | N8—C7—C1 | 122.4 (3) |
C2—C3—H3 | 120.1 | N8—C7—S11 | 113.9 (2) |
C4—C3—C2 | 119.8 (3) | C7—N8—N9 | 113.0 (2) |
C4—C3—H3 | 120.1 | C10—N9—N8 | 110.8 (2) |
C3—C4—C5 | 121.4 (3) | N9—C10—S11 | 116.4 (2) |
C3—C4—I13 | 119.7 (2) | N9—C10—Br12 | 121.3 (2) |
C5—C4—I13 | 118.8 (2) | S11—C10—Br12 | 122.26 (17) |
C4—C5—H5 | 120.7 | C10—S11—C7 | 85.92 (14) |
C6—C5—C4 | 118.7 (3) | | |
| | | |
C1—C2—C3—C4 | 1.5 (5) | C6—C1—C7—S11 | −178.3 (2) |
C1—C7—N8—N9 | 179.9 (3) | C7—C1—C2—C3 | 179.6 (3) |
C1—C7—S11—C10 | −179.7 (3) | C7—C1—C6—C5 | 179.8 (3) |
C2—C1—C6—C5 | 0.5 (5) | C7—N8—N9—C10 | 0.0 (4) |
C2—C1—C7—N8 | −179.3 (3) | N8—C7—S11—C10 | 0.6 (3) |
C2—C1—C7—S11 | 1.0 (4) | N8—N9—C10—S11 | 0.5 (4) |
C2—C3—C4—C5 | −1.4 (5) | N8—N9—C10—Br12 | −178.7 (2) |
C2—C3—C4—I13 | −179.2 (2) | N9—C10—S11—C7 | −0.6 (3) |
C3—C4—C5—C6 | 0.8 (5) | S11—C7—N8—N9 | −0.5 (4) |
C4—C5—C6—C1 | −0.4 (5) | Br12—C10—S11—C7 | 178.6 (2) |
C6—C1—C2—C3 | −1.0 (5) | I13—C4—C5—C6 | 178.6 (2) |
C6—C1—C7—N8 | 1.3 (5) | | |
Halogen- and chalcogen-bond geometries (Å, °) topTarget | R—D···A | D···A | R—D···A |
T1 | I12···I13 | 3.7477 (6) | 174.33 (12) |
| I13···C3 | 3.368 (4) | 89.8 (3) |
| S11···N8 | 3.147 (4) | 143.32 (17) |
| S11···N9 | 3.236 (4) | 157.99 (19) |
| C2—H2···N9 | 3.478 (6) | 121.2 (5) |
T2 | Br12···Br13 | 3.4685 (10) | 169.11 (17) |
| Se11···N8 | 3.060 (5) | 146.97 (19) |
| Se11···N9 | 3.123 (5) | 157.99 (19) |
| C2—H2···N9 | 3.690 (8) | 121.2 (5) |
T3 | Br12···I13 | 3.6237 (7) | 168.76 (13) |
| Se11···N8 | 3.050 (3) | 146.11 (15) |
| Se11···N9 | 3.129 (3) | 158.18 (15) |
| C2—H2···N9 | 3.696 (6) | 121.1 (3) |
T4 | Br12···I13 | 3.6141 (7) | 170.09 (11) |
| S11···N8 | 3.071 (2) | 147.59 (12) |
| S11···N9 | 3.153 (2) | 151.79 (12) |
| C2—H2···N9 | 3.646 (4) | 122.5 (2) |
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