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The X-ray structures of three new 1:1 pharmaceutical cocrystals of 11-azaartemisinin (11-Aza; systematic name: 1,5,9-trimethyl-14,15,16-trioxa-11-azatetracyclo[10.3.1.0
4,13.0
8,13]hexadecan-10-one, C
15H
23NO
4) with bromo-substituted salicylic acids [namely, 5-bromo- (5-BrSalA, C
7H
5BrO
3), 4-bromo- (4-BrSalA, C
7H
5BrO
3) and 3,5-dibromosalicylic acid (3,5-Br
2SalA, C
7H
4Br
2O
3)] are reported. All the structures are related to the parent 11-Aza:SalA cocrystal (monoclinic
P2
1) reported previously. The 5-BrSalA analogue is isostructural with the parent, with lattice expansion along the
c axis. The 4-BrSalA and 3,5-Br
2SalA cocrystals retain the highly preserved 2
1 stacks of the molecular pairs, but these pack with a varying degree of slippage with respect to neighbouring stacks, altering the close contacts between them, and represent two potential alternative homostructural arrangements for the parent compound. Structure redeterminations of the bromosalicylic acids 5-BrSalA, 4-BrSalA and 3,5-Br
2SalA at 100 K show that the packing efficiency of the cocrystals need
not be higher than the parent coformers, based on specific-volume calculations, attributable to the strong O—H
O=C hydrogen bonds of 2.54 Å in the cocrystals.
Supporting information
CCDC references: 2080188; 2080187; 2080186
For all structures, data collection: CrysAlis PRO (Rigaku OD, 2020); cell refinement: CrysAlis PRO (Rigaku OD, 2020); data reduction: CrysAlis PRO (Rigaku OD, 2020). Program(s) used to solve structure: SHELXS (Sheldrick, 2008) for mona16cult; SHELXS1986 (Sheldrick, 2008) for mona22cult, mona23cult. For all structures, program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).
1,5,9-Trimethyl-14,15,16-trioxa-11-azatetracyclo[10.3.1.0
4,13.0
8,13]hexadecan-10-one; 5-bromosalicylic acid (mona16cult)
top
Crystal data top
C15H23NO4·C7H5BrO3 | F(000) = 516 |
Mr = 498.36 | Dx = 1.494 Mg m−3 |
Monoclinic, P21 | Cu Kα radiation, λ = 1.54184 Å |
a = 9.9325 (4) Å | Cell parameters from 2387 reflections |
b = 9.0196 (3) Å | θ = 3.6–71.7° |
c = 12.3942 (4) Å | µ = 2.91 mm−1 |
β = 93.844 (3)° | T = 100 K |
V = 1107.88 (6) Å3 | Needle, colourless |
Z = 2 | 0.1 × 0.02 × 0.02 mm |
Data collection top
Rigaku OD SuperNova Dual source diffractometer with an Atlas detector | 3193 independent reflections |
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source | 2929 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.048 |
Detector resolution: 5.1788 pixels mm-1 | θmax = 72.5°, θmin = 3.6° |
ω scans | h = −12→11 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2020) | k = −11→7 |
Tmin = 0.961, Tmax = 1.000 | l = −15→15 |
6416 measured reflections | |
Refinement top
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.034 | w = 1/[σ2(Fo2) + (0.0101P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.061 | (Δ/σ)max < 0.001 |
S = 1.02 | Δρmax = 0.24 e Å−3 |
3193 reflections | Δρmin = −0.39 e Å−3 |
295 parameters | Absolute structure: Flack x determined using 735 quotients [(I+)-(I-)]/[(I+)+(I-)]
(Parsons et al., 2013) |
1 restraint | Absolute structure parameter: −0.04 (2) |
Primary atom site location: structure-invariant direct methods | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.5532 (3) | 0.7034 (3) | 0.6656 (3) | 0.0225 (7) | |
C1 | 0.6030 (5) | 0.5514 (5) | 0.6640 (4) | 0.0207 (9) | |
O2 | 0.4123 (3) | 0.7154 (3) | 0.6221 (3) | 0.0251 (7) | |
C2 | 0.5065 (4) | 0.4579 (4) | 0.5911 (3) | 0.0220 (9) | |
H2 | 0.5368 | 0.3524 | 0.5979 | 0.026* | |
O3 | 0.3709 (3) | 0.4638 (3) | 0.6190 (2) | 0.0242 (7) | |
C3 | 0.3374 (5) | 0.6016 (5) | 0.6686 (4) | 0.0263 (10) | |
C4 | 0.3658 (5) | 0.5943 (5) | 0.7913 (4) | 0.0318 (11) | |
H4A | 0.2810 | 0.5692 | 0.8247 | 0.038* | |
H4B | 0.3946 | 0.6936 | 0.8178 | 0.038* | |
C5 | 0.4744 (5) | 0.4809 (5) | 0.8291 (4) | 0.0315 (11) | |
H5A | 0.4883 | 0.4879 | 0.9088 | 0.038* | |
H5B | 0.4389 | 0.3805 | 0.8119 | 0.038* | |
C6 | 0.6914 (6) | 0.3490 (5) | 0.7945 (4) | 0.0302 (12) | |
H6 | 0.6372 | 0.2711 | 0.7539 | 0.036* | |
C7 | 0.8260 (5) | 0.3602 (5) | 0.7435 (4) | 0.0374 (13) | |
H7A | 0.8709 | 0.2622 | 0.7474 | 0.045* | |
H7B | 0.8846 | 0.4311 | 0.7858 | 0.045* | |
C8 | 0.8120 (5) | 0.4107 (5) | 0.6261 (4) | 0.0322 (11) | |
H8A | 0.7597 | 0.3363 | 0.5821 | 0.039* | |
H8B | 0.9026 | 0.4188 | 0.5977 | 0.039* | |
C9 | 0.7269 (4) | 0.6305 (5) | 0.5031 (3) | 0.0230 (9) | |
H9 | 0.7032 | 0.7368 | 0.5144 | 0.028* | |
O10 | 0.6069 (3) | 0.5879 (3) | 0.3318 (3) | 0.0252 (7) | |
C10 | 0.6114 (4) | 0.5677 (4) | 0.4321 (4) | 0.0213 (9) | |
N11 | 0.5111 (4) | 0.5003 (4) | 0.4782 (3) | 0.0224 (8) | |
C11 | 0.6121 (5) | 0.4957 (5) | 0.7815 (4) | 0.0251 (10) | |
H11A | 0.6641 | 0.5718 | 0.8257 | 0.030* | |
C12 | 0.7402 (4) | 0.5617 (5) | 0.6168 (4) | 0.0248 (10) | |
H12 | 0.7954 | 0.6323 | 0.6637 | 0.030* | |
C13 | 0.1918 (4) | 0.6341 (7) | 0.6320 (4) | 0.0355 (11) | |
H13A | 0.1639 | 0.7271 | 0.6647 | 0.053* | |
H13B | 0.1343 | 0.5531 | 0.6547 | 0.053* | |
H13C | 0.1830 | 0.6431 | 0.5531 | 0.053* | |
C14 | 0.7080 (6) | 0.2995 (6) | 0.9124 (4) | 0.0448 (14) | |
H14A | 0.7521 | 0.3783 | 0.9562 | 0.067* | |
H14B | 0.7634 | 0.2096 | 0.9180 | 0.067* | |
H14C | 0.6191 | 0.2788 | 0.9388 | 0.067* | |
C15 | 0.8586 (4) | 0.6337 (7) | 0.4457 (4) | 0.0371 (12) | |
H15A | 0.8808 | 0.5331 | 0.4228 | 0.056* | |
H15B | 0.9315 | 0.6716 | 0.4954 | 0.056* | |
H15C | 0.8477 | 0.6984 | 0.3822 | 0.056* | |
Br5 | 0.22969 (5) | 0.15227 (6) | −0.14014 (4) | 0.03746 (12) | |
O20 | 0.4365 (3) | 0.4767 (3) | 0.1926 (3) | 0.0240 (7) | |
C20 | 0.3164 (5) | 0.4549 (5) | 0.2282 (4) | 0.0239 (11) | |
O21 | 0.2833 (3) | 0.4988 (3) | 0.3169 (2) | 0.0251 (7) | |
C21 | 0.2209 (4) | 0.3721 (5) | 0.1535 (3) | 0.0217 (9) | |
O22 | 0.0447 (3) | 0.3911 (4) | 0.2787 (3) | 0.0312 (8) | |
C22 | 0.0901 (5) | 0.3426 (5) | 0.1846 (4) | 0.0253 (9) | |
C23 | 0.0023 (5) | 0.2573 (5) | 0.1164 (4) | 0.0331 (12) | |
H23 | −0.0871 | 0.2388 | 0.1358 | 0.040* | |
C24 | 0.0445 (5) | 0.2005 (6) | 0.0221 (4) | 0.0341 (12) | |
H24 | −0.0146 | 0.1401 | −0.0224 | 0.041* | |
C25 | 0.1741 (5) | 0.2309 (5) | −0.0087 (4) | 0.0279 (10) | |
C26 | 0.2608 (5) | 0.3163 (5) | 0.0553 (3) | 0.0245 (9) | |
H26 | 0.3483 | 0.3377 | 0.0330 | 0.029* | |
H11 | 0.454 (6) | 0.466 (7) | 0.427 (5) | 0.06 (2)* | |
H22 | 0.107 (5) | 0.430 (5) | 0.314 (4) | 0.024 (14)* | |
H20 | 0.495 (7) | 0.516 (8) | 0.240 (6) | 0.09 (3)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0228 (16) | 0.0180 (15) | 0.0268 (17) | 0.0030 (11) | 0.0017 (13) | −0.0012 (11) |
C1 | 0.019 (2) | 0.016 (2) | 0.026 (2) | 0.0005 (17) | −0.0001 (18) | −0.0018 (16) |
O2 | 0.0228 (16) | 0.0244 (15) | 0.0283 (17) | 0.0018 (13) | 0.0033 (13) | 0.0059 (12) |
C2 | 0.022 (2) | 0.020 (2) | 0.023 (2) | 0.0036 (17) | 0.0007 (18) | −0.0014 (16) |
O3 | 0.0230 (16) | 0.0231 (16) | 0.0265 (16) | −0.0041 (12) | 0.0020 (13) | 0.0034 (12) |
C3 | 0.028 (2) | 0.025 (2) | 0.027 (2) | 0.0052 (17) | 0.009 (2) | 0.0037 (17) |
C4 | 0.035 (3) | 0.035 (2) | 0.026 (2) | 0.000 (2) | 0.009 (2) | 0.0026 (18) |
C5 | 0.040 (3) | 0.030 (3) | 0.024 (2) | −0.002 (2) | 0.001 (2) | 0.008 (2) |
C6 | 0.036 (3) | 0.021 (2) | 0.032 (3) | 0.001 (2) | −0.007 (2) | 0.001 (2) |
C7 | 0.031 (3) | 0.026 (2) | 0.053 (3) | 0.006 (2) | −0.014 (2) | 0.002 (2) |
C8 | 0.020 (2) | 0.029 (2) | 0.047 (3) | 0.0039 (19) | −0.006 (2) | −0.008 (2) |
C9 | 0.021 (2) | 0.025 (3) | 0.0229 (18) | −0.0023 (19) | 0.0010 (15) | −0.0085 (19) |
O10 | 0.0250 (17) | 0.0283 (15) | 0.0220 (16) | −0.0060 (13) | 0.0004 (13) | −0.0024 (12) |
C10 | 0.021 (2) | 0.015 (2) | 0.027 (2) | 0.0004 (17) | 0.0030 (19) | −0.0068 (17) |
N11 | 0.023 (2) | 0.0190 (17) | 0.025 (2) | −0.0028 (15) | 0.0007 (16) | −0.0021 (15) |
C11 | 0.031 (3) | 0.019 (2) | 0.024 (2) | −0.0005 (19) | −0.0068 (19) | −0.0006 (17) |
C12 | 0.024 (2) | 0.021 (2) | 0.029 (3) | 0.0012 (18) | −0.0041 (19) | −0.0041 (17) |
C13 | 0.023 (2) | 0.045 (3) | 0.039 (2) | 0.006 (3) | 0.0087 (19) | 0.013 (3) |
C14 | 0.059 (4) | 0.033 (3) | 0.039 (3) | 0.002 (3) | −0.020 (3) | 0.009 (2) |
C15 | 0.022 (2) | 0.056 (3) | 0.034 (2) | −0.009 (3) | 0.0030 (18) | −0.004 (3) |
Br5 | 0.0368 (3) | 0.0506 (3) | 0.0255 (2) | −0.0097 (3) | 0.00600 (18) | −0.0104 (3) |
O20 | 0.0220 (17) | 0.0262 (16) | 0.0239 (16) | −0.0061 (13) | 0.0030 (13) | 0.0032 (13) |
C20 | 0.025 (3) | 0.018 (2) | 0.027 (3) | −0.0008 (19) | −0.004 (2) | 0.0069 (18) |
O21 | 0.0244 (17) | 0.0279 (16) | 0.0230 (16) | 0.0007 (13) | 0.0025 (13) | −0.0025 (13) |
C21 | 0.020 (2) | 0.024 (2) | 0.021 (2) | 0.0010 (17) | 0.0010 (17) | 0.0052 (16) |
O22 | 0.0233 (19) | 0.043 (2) | 0.0277 (18) | 0.0010 (16) | 0.0033 (15) | −0.0028 (15) |
C22 | 0.021 (2) | 0.031 (2) | 0.024 (2) | 0.0036 (18) | 0.0016 (18) | 0.0040 (18) |
C23 | 0.022 (3) | 0.046 (3) | 0.032 (3) | −0.006 (2) | 0.006 (2) | 0.000 (2) |
C24 | 0.023 (2) | 0.051 (3) | 0.027 (2) | −0.012 (2) | −0.002 (2) | −0.003 (2) |
C25 | 0.030 (3) | 0.034 (2) | 0.020 (2) | −0.001 (2) | 0.001 (2) | −0.0020 (19) |
C26 | 0.022 (2) | 0.029 (2) | 0.023 (2) | −0.0019 (18) | 0.0041 (18) | 0.0037 (18) |
Geometric parameters (Å, º) top
O1—C1 | 1.458 (5) | C8—C12 | 1.539 (6) |
O1—O2 | 1.469 (4) | C9—C10 | 1.509 (5) |
C1—C2 | 1.526 (6) | C9—C12 | 1.537 (6) |
C1—C11 | 1.538 (6) | C9—C15 | 1.530 (6) |
C1—C12 | 1.522 (6) | O10—C10 | 1.254 (5) |
O2—C3 | 1.413 (5) | C10—N11 | 1.329 (6) |
C2—O3 | 1.413 (5) | Br5—C25 | 1.892 (5) |
C2—N11 | 1.454 (6) | O20—C20 | 1.313 (6) |
O3—C3 | 1.435 (5) | C20—O21 | 1.233 (6) |
C3—C4 | 1.530 (6) | C20—C21 | 1.482 (6) |
C3—C13 | 1.515 (6) | C21—C22 | 1.405 (6) |
C4—C5 | 1.536 (6) | C21—C26 | 1.398 (6) |
C5—C11 | 1.531 (7) | O22—C22 | 1.351 (5) |
C6—C7 | 1.521 (8) | C22—C23 | 1.404 (7) |
C6—C11 | 1.543 (6) | C23—C24 | 1.367 (7) |
C6—C14 | 1.526 (7) | C24—C25 | 1.395 (6) |
C7—C8 | 1.522 (7) | C25—C26 | 1.369 (6) |
| | | |
C1—O1—O2 | 112.3 (3) | C15—C9—C12 | 114.2 (4) |
O1—C1—C2 | 109.1 (3) | O10—C10—C9 | 119.9 (4) |
O1—C1—C11 | 107.0 (4) | O10—C10—N11 | 121.0 (4) |
O1—C1—C12 | 105.1 (4) | N11—C10—C9 | 118.9 (4) |
C2—C1—C11 | 112.0 (4) | C10—N11—C2 | 127.4 (4) |
C12—C1—C2 | 110.5 (4) | C1—C11—C6 | 112.1 (4) |
C12—C1—C11 | 112.8 (4) | C5—C11—C1 | 113.4 (4) |
C3—O2—O1 | 108.2 (3) | C5—C11—C6 | 110.4 (4) |
O3—C2—C1 | 113.9 (4) | C1—C12—C8 | 109.9 (4) |
O3—C2—N11 | 108.5 (3) | C1—C12—C9 | 110.7 (4) |
N11—C2—C1 | 111.4 (4) | C9—C12—C8 | 115.9 (4) |
C2—O3—C3 | 113.0 (3) | O20—C20—C21 | 115.0 (4) |
O2—C3—O3 | 108.1 (3) | O21—C20—O20 | 123.6 (5) |
O2—C3—C4 | 111.7 (4) | O21—C20—C21 | 121.4 (5) |
O2—C3—C13 | 104.8 (4) | C22—C21—C20 | 119.2 (4) |
O3—C3—C4 | 110.8 (3) | C26—C21—C20 | 121.2 (4) |
O3—C3—C13 | 106.5 (4) | C26—C21—C22 | 119.5 (4) |
C13—C3—C4 | 114.5 (4) | O22—C22—C21 | 123.0 (4) |
C3—C4—C5 | 114.3 (4) | O22—C22—C23 | 117.9 (4) |
C11—C5—C4 | 116.8 (4) | C23—C22—C21 | 119.1 (4) |
C7—C6—C11 | 110.9 (4) | C24—C23—C22 | 120.5 (4) |
C7—C6—C14 | 112.1 (5) | C23—C24—C25 | 120.2 (4) |
C14—C6—C11 | 111.9 (5) | C24—C25—Br5 | 119.4 (4) |
C6—C7—C8 | 113.0 (4) | C26—C25—Br5 | 120.1 (4) |
C7—C8—C12 | 110.4 (4) | C26—C25—C24 | 120.5 (4) |
C10—C9—C12 | 113.5 (4) | C25—C26—C21 | 120.3 (4) |
C10—C9—C15 | 112.1 (3) | | |
| | | |
O1—C1—C2—O3 | −54.5 (5) | N11—C2—O3—C3 | −95.5 (4) |
O1—C1—C2—N11 | 68.6 (5) | C11—C1—C2—O3 | 63.8 (5) |
O1—C1—C11—C5 | 66.4 (5) | C11—C1—C2—N11 | −173.1 (3) |
O1—C1—C11—C6 | −167.9 (4) | C11—C1—C12—C8 | 55.7 (5) |
O1—C1—C12—C8 | 171.9 (4) | C11—C1—C12—C9 | −175.1 (3) |
O1—C1—C12—C9 | −58.9 (5) | C11—C6—C7—C8 | −53.7 (6) |
O1—O2—C3—O3 | −74.2 (4) | C12—C1—C2—O3 | −169.6 (3) |
O1—O2—C3—C4 | 48.0 (4) | C12—C1—C2—N11 | −46.5 (5) |
O1—O2—C3—C13 | 172.5 (3) | C12—C1—C11—C5 | −178.5 (4) |
C1—O1—O2—C3 | 46.3 (4) | C12—C1—C11—C6 | −52.8 (5) |
C1—C2—O3—C3 | 29.2 (5) | C12—C9—C10—O10 | −163.9 (4) |
C1—C2—N11—C10 | 23.4 (6) | C12—C9—C10—N11 | 20.7 (6) |
O2—O1—C1—C2 | 14.6 (5) | C13—C3—C4—C5 | 145.8 (4) |
O2—O1—C1—C11 | −106.7 (4) | C14—C6—C7—C8 | −179.5 (4) |
O2—O1—C1—C12 | 133.1 (3) | C14—C6—C11—C1 | 176.3 (4) |
O2—C3—C4—C5 | −95.3 (4) | C14—C6—C11—C5 | −56.3 (6) |
C2—C1—C11—C5 | −53.2 (5) | C15—C9—C10—O10 | −32.6 (6) |
C2—C1—C11—C6 | 72.6 (5) | C15—C9—C10—N11 | 151.9 (4) |
C2—C1—C12—C8 | −70.5 (5) | C15—C9—C12—C1 | −175.3 (4) |
C2—C1—C12—C9 | 58.7 (5) | C15—C9—C12—C8 | −49.4 (6) |
C2—O3—C3—O2 | 33.5 (5) | Br5—C25—C26—C21 | −178.7 (3) |
C2—O3—C3—C4 | −89.2 (4) | O20—C20—C21—C22 | 179.7 (4) |
C2—O3—C3—C13 | 145.7 (4) | O20—C20—C21—C26 | 3.0 (6) |
O3—C2—N11—C10 | 149.5 (4) | C20—C21—C22—O22 | 2.4 (6) |
O3—C3—C4—C5 | 25.3 (6) | C20—C21—C22—C23 | −176.6 (4) |
C3—C4—C5—C11 | 55.3 (6) | C20—C21—C26—C25 | 175.2 (4) |
C4—C5—C11—C1 | −33.8 (6) | O21—C20—C21—C22 | −0.2 (6) |
C4—C5—C11—C6 | −160.5 (4) | O21—C20—C21—C26 | −176.8 (4) |
C6—C7—C8—C12 | 57.6 (5) | C21—C22—C23—C24 | 1.6 (7) |
C7—C6—C11—C1 | 50.4 (5) | O22—C22—C23—C24 | −177.4 (4) |
C7—C6—C11—C5 | 177.7 (4) | C22—C21—C26—C25 | −1.5 (6) |
C7—C8—C12—C1 | −57.2 (5) | C22—C23—C24—C25 | −2.0 (8) |
C7—C8—C12—C9 | 176.4 (4) | C23—C24—C25—Br5 | −179.5 (4) |
C9—C10—N11—C2 | −10.2 (6) | C23—C24—C25—C26 | 0.7 (8) |
O10—C10—N11—C2 | 174.4 (4) | C24—C25—C26—C21 | 1.0 (7) |
C10—C9—C12—C1 | −45.1 (5) | C26—C21—C22—O22 | 179.1 (4) |
C10—C9—C12—C8 | 80.8 (5) | C26—C21—C22—C23 | 0.2 (6) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11···O21 | 0.88 (6) | 2.12 (6) | 2.917 (5) | 150 (5) |
O22—H22···O21 | 0.81 (5) | 1.85 (5) | 2.575 (4) | 147 (5) |
O20—H20···O10 | 0.88 (7) | 1.66 (7) | 2.541 (4) | 179 (8) |
1,5,9-Trimethyl-14,15,16-trioxa-11-azatetracyclo[10.3.1.0
4,13.0
8,13]hexadecan-10-one; 3,5-dibromosalicylic acid (mona22cult)
top
Crystal data top
C15H23NO4·C7H4Br2O3 | F(000) = 584 |
Mr = 577.26 | Dx = 1.642 Mg m−3 |
Monoclinic, P21 | Cu Kα radiation, λ = 1.54184 Å |
a = 9.52200 (19) Å | Cell parameters from 3893 reflections |
b = 9.3214 (2) Å | θ = 3.3–72.4° |
c = 13.3453 (3) Å | µ = 4.78 mm−1 |
β = 99.6446 (19)° | T = 100 K |
V = 1167.76 (4) Å3 | Block, colourless |
Z = 2 | 0.05 × 0.05 × 0.04 mm |
Data collection top
Rigaku OD SuperNova Dual source diffractometer with an Atlas detector | 4060 independent reflections |
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source | 3811 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.028 |
Detector resolution: 5.1788 pixels mm-1 | θmax = 72.3°, θmin = 3.4° |
ω scans | h = −11→7 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2020) | k = −11→10 |
Tmin = 0.977, Tmax = 1.000 | l = −16→15 |
6899 measured reflections | |
Refinement top
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.030 | w = 1/[σ2(Fo2) + (0.0219P)2 + 0.1825P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.067 | (Δ/σ)max < 0.001 |
S = 1.03 | Δρmax = 0.27 e Å−3 |
4060 reflections | Δρmin = −0.44 e Å−3 |
304 parameters | Absolute structure: Flack x determined using 1437 quotients [(I+)-(I-)]/[(I+)+(I-)]
(Parsons et al., 2013) |
2 restraints | Absolute structure parameter: −0.034 (19) |
Primary atom site location: structure-invariant direct methods | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.6727 (3) | 0.3538 (3) | 0.6057 (2) | 0.0174 (6) | |
C1 | 0.6336 (4) | 0.5012 (4) | 0.6270 (3) | 0.0157 (8) | |
O2 | 0.6895 (3) | 0.3363 (3) | 0.4986 (2) | 0.0183 (6) | |
C2 | 0.5850 (4) | 0.5833 (5) | 0.5291 (3) | 0.0161 (8) | |
H2 | 0.5750 | 0.6863 | 0.5477 | 0.019* | |
O3 | 0.6836 (3) | 0.5777 (3) | 0.4602 (2) | 0.0180 (6) | |
C3 | 0.7726 (4) | 0.4533 (5) | 0.4731 (3) | 0.0202 (8) | |
C4 | 0.9049 (4) | 0.4783 (5) | 0.5542 (3) | 0.0226 (9) | |
H4A | 0.9296 | 0.3874 | 0.5913 | 0.027* | |
H4B | 0.9857 | 0.5043 | 0.5198 | 0.027* | |
C5 | 0.8865 (4) | 0.5948 (5) | 0.6304 (4) | 0.0223 (9) | |
H5A | 0.8695 | 0.6869 | 0.5934 | 0.027* | |
H5B | 0.9771 | 0.6043 | 0.6786 | 0.027* | |
C6 | 0.7273 (5) | 0.7121 (5) | 0.7421 (3) | 0.0210 (9) | |
H6 | 0.7006 | 0.7845 | 0.6869 | 0.025* | |
C7 | 0.6002 (5) | 0.6935 (5) | 0.7974 (4) | 0.0223 (9) | |
H7A | 0.5734 | 0.7882 | 0.8218 | 0.027* | |
H7B | 0.6286 | 0.6313 | 0.8575 | 0.027* | |
C8 | 0.4707 (5) | 0.6274 (5) | 0.7296 (3) | 0.0210 (9) | |
H8A | 0.3931 | 0.6135 | 0.7696 | 0.025* | |
H8B | 0.4360 | 0.6937 | 0.6729 | 0.025* | |
C9 | 0.3858 (4) | 0.4046 (5) | 0.6214 (3) | 0.0173 (8) | |
H9 | 0.4228 | 0.3065 | 0.6104 | 0.021* | |
O10 | 0.2232 (3) | 0.4532 (4) | 0.4665 (2) | 0.0193 (6) | |
C10 | 0.3452 (4) | 0.4691 (5) | 0.5164 (3) | 0.0156 (7) | |
N11 | 0.4472 (4) | 0.5360 (4) | 0.4758 (3) | 0.0181 (7) | |
C11 | 0.7645 (4) | 0.5712 (5) | 0.6925 (3) | 0.0191 (8) | |
H11A | 0.8005 | 0.5027 | 0.7486 | 0.023* | |
H11 | 0.423 (8) | 0.567 (10) | 0.415 (7) | 0.08 (3)* | |
C12 | 0.5093 (4) | 0.4838 (4) | 0.6871 (3) | 0.0161 (8) | |
H12 | 0.5443 | 0.4205 | 0.7466 | 0.019* | |
C13 | 0.8082 (5) | 0.4155 (6) | 0.3693 (3) | 0.0258 (10) | |
H13A | 0.8706 | 0.3312 | 0.3755 | 0.039* | |
H13B | 0.8568 | 0.4967 | 0.3434 | 0.039* | |
H13C | 0.7202 | 0.3943 | 0.3222 | 0.039* | |
C14 | 0.8551 (5) | 0.7700 (6) | 0.8149 (4) | 0.0286 (11) | |
H14A | 0.8914 | 0.6957 | 0.8644 | 0.043* | |
H14B | 0.8261 | 0.8541 | 0.8505 | 0.043* | |
H14C | 0.9300 | 0.7976 | 0.7764 | 0.043* | |
C15 | 0.2569 (4) | 0.3815 (5) | 0.6734 (3) | 0.0233 (9) | |
H15A | 0.2139 | 0.4744 | 0.6845 | 0.035* | |
H15B | 0.2870 | 0.3339 | 0.7389 | 0.035* | |
H15C | 0.1870 | 0.3214 | 0.6303 | 0.035* | |
Br3 | 0.33108 (6) | 0.93495 (7) | −0.06310 (4) | 0.04324 (17) | |
Br5 | −0.20630 (5) | 0.96457 (6) | 0.06056 (4) | 0.03468 (14) | |
O20 | 0.1227 (3) | 0.5988 (4) | 0.3098 (2) | 0.0214 (6) | |
C20 | 0.2127 (5) | 0.6300 (5) | 0.2494 (3) | 0.0190 (9) | |
H20 | 0.157 (7) | 0.538 (8) | 0.357 (6) | 0.05 (2)* | |
O21 | 0.3362 (3) | 0.5814 (4) | 0.2614 (2) | 0.0217 (6) | |
C21 | 0.1605 (5) | 0.7287 (5) | 0.1647 (3) | 0.0192 (8) | |
O22 | 0.3880 (3) | 0.7220 (4) | 0.1071 (3) | 0.0274 (7) | |
C22 | 0.2539 (5) | 0.7720 (5) | 0.0994 (3) | 0.0216 (9) | |
H22 | 0.395 (10) | 0.661 (8) | 0.154 (5) | 0.09 (3)* | |
C23 | 0.2057 (5) | 0.8733 (6) | 0.0241 (3) | 0.0264 (10) | |
C24 | 0.0714 (5) | 0.9305 (5) | 0.0127 (3) | 0.0253 (10) | |
H24 | 0.0414 | 1.0000 | −0.0385 | 0.030* | |
C25 | −0.0206 (5) | 0.8849 (5) | 0.0778 (3) | 0.0232 (9) | |
C26 | 0.0220 (5) | 0.7856 (5) | 0.1532 (3) | 0.0207 (9) | |
H26 | −0.0416 | 0.7558 | 0.1969 | 0.025* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0197 (15) | 0.0152 (15) | 0.0177 (14) | 0.0032 (11) | 0.0042 (12) | 0.0010 (12) |
C1 | 0.0155 (18) | 0.014 (2) | 0.017 (2) | 0.0015 (14) | 0.0008 (15) | −0.0002 (15) |
O2 | 0.0189 (15) | 0.0195 (16) | 0.0177 (15) | −0.0005 (12) | 0.0062 (12) | −0.0017 (12) |
C2 | 0.0123 (18) | 0.020 (2) | 0.017 (2) | 0.0000 (15) | 0.0028 (15) | 0.0014 (16) |
O3 | 0.0163 (14) | 0.0213 (15) | 0.0173 (15) | 0.0000 (12) | 0.0056 (12) | 0.0012 (12) |
C3 | 0.0189 (17) | 0.019 (2) | 0.025 (2) | 0.0010 (19) | 0.0098 (15) | 0.0005 (19) |
C4 | 0.0125 (17) | 0.025 (2) | 0.031 (2) | 0.0003 (18) | 0.0045 (15) | 0.000 (2) |
C5 | 0.0125 (19) | 0.024 (2) | 0.029 (2) | −0.0020 (17) | −0.0007 (17) | 0.0000 (18) |
C6 | 0.023 (2) | 0.021 (2) | 0.017 (2) | 0.0006 (18) | −0.0027 (17) | 0.0010 (17) |
C7 | 0.025 (2) | 0.024 (2) | 0.017 (2) | 0.0038 (18) | 0.0010 (17) | −0.0035 (17) |
C8 | 0.023 (2) | 0.022 (2) | 0.018 (2) | 0.0044 (17) | 0.0053 (17) | −0.0009 (17) |
C9 | 0.0156 (18) | 0.020 (2) | 0.017 (2) | 0.0012 (15) | 0.0055 (15) | 0.0022 (16) |
O10 | 0.0120 (12) | 0.0259 (16) | 0.0195 (13) | −0.0010 (13) | 0.0006 (10) | 0.0018 (15) |
C10 | 0.0129 (16) | 0.0166 (19) | 0.0175 (17) | 0.0038 (17) | 0.0035 (14) | −0.0008 (17) |
N11 | 0.0142 (17) | 0.0228 (19) | 0.0170 (18) | −0.0013 (14) | 0.0021 (14) | 0.0015 (15) |
C11 | 0.0140 (19) | 0.021 (2) | 0.021 (2) | 0.0014 (16) | −0.0020 (16) | 0.0006 (17) |
C12 | 0.0155 (17) | 0.019 (2) | 0.0144 (17) | 0.0021 (16) | 0.0037 (14) | 0.0028 (16) |
C13 | 0.022 (2) | 0.030 (3) | 0.029 (2) | −0.0010 (19) | 0.0130 (17) | −0.004 (2) |
C14 | 0.031 (3) | 0.029 (3) | 0.023 (2) | −0.002 (2) | −0.004 (2) | −0.0003 (19) |
C15 | 0.018 (2) | 0.036 (3) | 0.016 (2) | −0.0004 (18) | 0.0043 (16) | 0.0010 (18) |
Br3 | 0.0427 (3) | 0.0631 (4) | 0.0272 (3) | −0.0045 (3) | 0.0155 (2) | 0.0110 (3) |
Br5 | 0.0343 (2) | 0.0472 (3) | 0.0227 (2) | 0.0173 (2) | 0.00495 (17) | 0.0120 (2) |
O20 | 0.0159 (14) | 0.0252 (17) | 0.0221 (16) | −0.0018 (12) | 0.0006 (12) | 0.0034 (13) |
C20 | 0.019 (2) | 0.019 (2) | 0.017 (2) | −0.0039 (16) | −0.0008 (16) | −0.0063 (16) |
O21 | 0.0185 (15) | 0.0252 (16) | 0.0203 (15) | 0.0025 (13) | −0.0004 (12) | −0.0030 (13) |
C21 | 0.021 (2) | 0.020 (2) | 0.016 (2) | −0.0011 (17) | 0.0016 (16) | −0.0034 (17) |
O22 | 0.0217 (15) | 0.036 (2) | 0.0248 (18) | −0.0004 (14) | 0.0058 (13) | −0.0025 (15) |
C22 | 0.020 (2) | 0.026 (2) | 0.017 (2) | −0.0066 (18) | −0.0001 (17) | −0.0072 (17) |
C23 | 0.028 (2) | 0.037 (3) | 0.015 (2) | −0.005 (2) | 0.0054 (17) | −0.0036 (18) |
C24 | 0.034 (2) | 0.026 (3) | 0.015 (2) | −0.002 (2) | 0.0017 (16) | 0.002 (2) |
C25 | 0.026 (2) | 0.025 (2) | 0.017 (2) | 0.0005 (18) | −0.0006 (17) | 0.0006 (17) |
C26 | 0.022 (2) | 0.025 (2) | 0.014 (2) | −0.0004 (18) | −0.0001 (16) | −0.0009 (17) |
Geometric parameters (Å, º) top
O1—C1 | 1.463 (5) | C9—C10 | 1.514 (5) |
O1—O2 | 1.474 (4) | C9—C12 | 1.534 (5) |
C1—C2 | 1.519 (6) | C9—C15 | 1.523 (5) |
C1—C11 | 1.542 (6) | O10—C10 | 1.247 (4) |
C1—C12 | 1.545 (5) | C10—N11 | 1.342 (5) |
O2—C3 | 1.421 (5) | Br3—C23 | 1.891 (5) |
C2—O3 | 1.421 (5) | Br5—C25 | 1.896 (5) |
C2—N11 | 1.452 (5) | O20—C20 | 1.304 (6) |
O3—C3 | 1.430 (6) | C20—O21 | 1.245 (5) |
C3—C4 | 1.534 (5) | C20—C21 | 1.477 (6) |
C3—C13 | 1.522 (6) | C21—C22 | 1.405 (6) |
C4—C5 | 1.518 (6) | C21—C26 | 1.406 (6) |
C5—C11 | 1.552 (6) | O22—C22 | 1.347 (6) |
C6—C7 | 1.529 (6) | C22—C23 | 1.399 (7) |
C6—C11 | 1.538 (6) | C23—C24 | 1.370 (7) |
C6—C14 | 1.523 (6) | C24—C25 | 1.399 (6) |
C7—C8 | 1.531 (6) | C25—C26 | 1.378 (6) |
C8—C12 | 1.523 (6) | | |
| | | |
C1—O1—O2 | 111.4 (3) | O10—C10—C9 | 121.1 (4) |
O1—C1—C2 | 110.9 (3) | O10—C10—N11 | 120.8 (4) |
O1—C1—C11 | 107.4 (3) | N11—C10—C9 | 117.9 (3) |
O1—C1—C12 | 104.1 (3) | C10—N11—C2 | 126.8 (4) |
C2—C1—C11 | 112.0 (3) | C1—C11—C5 | 111.4 (4) |
C2—C1—C12 | 110.5 (3) | C6—C11—C1 | 112.5 (3) |
C11—C1—C12 | 111.5 (3) | C6—C11—C5 | 110.8 (4) |
C3—O2—O1 | 107.6 (3) | C8—C12—C1 | 110.8 (3) |
O3—C2—C1 | 113.5 (3) | C8—C12—C9 | 115.2 (3) |
O3—C2—N11 | 108.2 (3) | C9—C12—C1 | 109.5 (3) |
N11—C2—C1 | 112.9 (3) | O20—C20—C21 | 116.1 (4) |
C2—O3—C3 | 113.2 (3) | O21—C20—O20 | 122.9 (4) |
O2—C3—O3 | 108.0 (3) | O21—C20—C21 | 120.9 (4) |
O2—C3—C4 | 111.9 (4) | C22—C21—C20 | 119.2 (4) |
O2—C3—C13 | 105.0 (4) | C22—C21—C26 | 120.2 (4) |
O3—C3—C4 | 111.2 (4) | C26—C21—C20 | 120.5 (4) |
O3—C3—C13 | 107.2 (4) | O22—C22—C21 | 122.9 (4) |
C13—C3—C4 | 113.3 (3) | O22—C22—C23 | 118.8 (4) |
C5—C4—C3 | 114.1 (4) | C23—C22—C21 | 118.3 (4) |
C4—C5—C11 | 115.9 (4) | C22—C23—Br3 | 118.8 (4) |
C7—C6—C11 | 111.6 (4) | C24—C23—Br3 | 119.2 (4) |
C14—C6—C7 | 110.2 (4) | C24—C23—C22 | 122.0 (4) |
C14—C6—C11 | 111.1 (4) | C23—C24—C25 | 118.9 (4) |
C6—C7—C8 | 112.6 (4) | C24—C25—Br5 | 118.3 (3) |
C12—C8—C7 | 110.6 (3) | C26—C25—Br5 | 120.4 (4) |
C10—C9—C12 | 113.0 (3) | C26—C25—C24 | 121.2 (4) |
C10—C9—C15 | 112.2 (3) | C25—C26—C21 | 119.3 (4) |
C15—C9—C12 | 114.0 (3) | | |
| | | |
O1—C1—C2—O3 | −52.6 (4) | C11—C1—C2—N11 | −169.0 (3) |
O1—C1—C2—N11 | 71.0 (4) | C11—C1—C12—C8 | 55.7 (4) |
O1—C1—C11—C5 | 69.1 (4) | C11—C1—C12—C9 | −176.2 (3) |
O1—C1—C11—C6 | −165.8 (3) | C11—C6—C7—C8 | −52.8 (5) |
O1—C1—C12—C8 | 171.2 (3) | C12—C1—C2—O3 | −167.6 (3) |
O1—C1—C12—C9 | −60.6 (4) | C12—C1—C2—N11 | −43.9 (5) |
O1—O2—C3—O3 | −75.7 (4) | C12—C1—C11—C5 | −177.4 (3) |
O1—O2—C3—C4 | 47.0 (4) | C12—C1—C11—C6 | −52.3 (5) |
O1—O2—C3—C13 | 170.2 (3) | C12—C9—C10—O10 | −155.5 (4) |
C1—O1—O2—C3 | 46.2 (4) | C12—C9—C10—N11 | 28.7 (5) |
C1—C2—O3—C3 | 25.7 (5) | C13—C3—C4—C5 | 144.5 (4) |
C1—C2—N11—C10 | 23.3 (6) | C14—C6—C7—C8 | −176.8 (4) |
O2—O1—C1—C2 | 14.5 (4) | C14—C6—C11—C1 | 174.0 (4) |
O2—O1—C1—C11 | −108.2 (3) | C14—C6—C11—C5 | −60.6 (5) |
O2—O1—C1—C12 | 133.3 (3) | C15—C9—C10—O10 | −25.0 (6) |
O2—C3—C4—C5 | −97.1 (5) | C15—C9—C10—N11 | 159.3 (4) |
C2—C1—C11—C5 | −53.0 (5) | C15—C9—C12—C1 | −180.0 (3) |
C2—C1—C11—C6 | 72.2 (5) | C15—C9—C12—C8 | −54.3 (5) |
C2—C1—C12—C8 | −69.6 (4) | Br3—C23—C24—C25 | −179.7 (4) |
C2—C1—C12—C9 | 58.5 (4) | Br5—C25—C26—C21 | −179.6 (3) |
C2—O3—C3—O2 | 36.5 (4) | O20—C20—C21—C22 | 177.1 (4) |
C2—O3—C3—C4 | −86.6 (4) | O20—C20—C21—C26 | 1.0 (6) |
C2—O3—C3—C13 | 149.1 (3) | C20—C21—C22—O22 | 3.4 (6) |
O3—C2—N11—C10 | 149.9 (4) | C20—C21—C22—C23 | −175.5 (4) |
O3—C3—C4—C5 | 23.7 (5) | C20—C21—C26—C25 | 175.6 (4) |
C3—C4—C5—C11 | 59.0 (5) | O21—C20—C21—C22 | −2.4 (6) |
C4—C5—C11—C1 | −37.0 (5) | O21—C20—C21—C26 | −178.5 (4) |
C4—C5—C11—C6 | −163.1 (4) | C21—C22—C23—Br3 | 179.0 (3) |
C6—C7—C8—C12 | 56.6 (5) | C21—C22—C23—C24 | 0.0 (7) |
C7—C6—C11—C1 | 50.5 (5) | O22—C22—C23—Br3 | 0.0 (6) |
C7—C6—C11—C5 | 175.9 (3) | O22—C22—C23—C24 | −179.0 (4) |
C7—C8—C12—C1 | −57.4 (5) | C22—C21—C26—C25 | −0.5 (7) |
C7—C8—C12—C9 | 177.6 (3) | C22—C23—C24—C25 | −0.7 (7) |
C9—C10—N11—C2 | −15.3 (6) | C23—C24—C25—Br5 | −179.7 (4) |
O10—C10—N11—C2 | 169.0 (4) | C23—C24—C25—C26 | 0.8 (7) |
C10—C9—C12—C1 | −50.3 (4) | C24—C25—C26—C21 | −0.2 (7) |
C10—C9—C12—C8 | 75.3 (4) | C26—C21—C22—O22 | 179.6 (4) |
N11—C2—O3—C3 | −100.4 (4) | C26—C21—C22—C23 | 0.6 (6) |
C11—C1—C2—O3 | 67.4 (5) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11···O21 | 0.86 (9) | 2.08 (9) | 2.910 (5) | 163 (9) |
O20—H20···O10 | 0.87 (8) | 1.68 (8) | 2.542 (4) | 167 (7) |
O22—H22···O21 | 0.84 (3) | 1.79 (5) | 2.558 (5) | 152 (9) |
1,5,9-Trimethyl-14,15,16-trioxa-11-azatetracyclo[10.3.1.0
4,13.0
8,13]hexadecan-10-one; 4-bromosalicylic acid (mona23cult)
top
Crystal data top
C15H23NO4·C7H5BrO3 | F(000) = 516 |
Mr = 498.36 | Dx = 1.461 Mg m−3 |
Monoclinic, P21 | Cu Kα radiation, λ = 1.54184 Å |
a = 11.0814 (2) Å | Cell parameters from 3985 reflections |
b = 9.28293 (18) Å | θ = 4.0–72.3° |
c = 11.1404 (2) Å | µ = 2.84 mm−1 |
β = 98.638 (2)° | T = 100 K |
V = 1132.99 (4) Å3 | Block, colourless |
Z = 2 | 0.06 × 0.04 × 0.03 mm |
Data collection top
Rigaku OD SuperNova Dual source diffractometer with an Atlas detector | 3833 independent reflections |
Radiation source: micro-focus sealed X-ray tube, SuperNova (Cu) X-ray Source | 3611 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.032 |
Detector resolution: 5.1788 pixels mm-1 | θmax = 72.5°, θmin = 4.0° |
ω scans | h = −12→13 |
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2020) | k = −11→10 |
Tmin = 0.889, Tmax = 1.000 | l = −10→13 |
6749 measured reflections | |
Refinement top
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.029 | w = 1/[σ2(Fo2) + (0.0222P)2 + 0.0574P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.068 | (Δ/σ)max = 0.001 |
S = 1.04 | Δρmax = 0.32 e Å−3 |
3833 reflections | Δρmin = −0.57 e Å−3 |
295 parameters | Absolute structure: Flack x determined using 1284 quotients [(I+)-(I-)]/[(I+)+(I-)]
(Parsons et al., 2013) |
1 restraint | Absolute structure parameter: −0.020 (15) |
Primary atom site location: structure-invariant direct methods | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.5838 (2) | 0.3279 (3) | 0.3424 (2) | 0.0178 (5) | |
C1 | 0.6268 (3) | 0.4741 (3) | 0.3744 (3) | 0.0155 (7) | |
O2 | 0.4522 (2) | 0.3118 (3) | 0.3446 (2) | 0.0208 (5) | |
C2 | 0.5307 (3) | 0.5568 (4) | 0.4319 (3) | 0.0173 (7) | |
H2 | 0.5574 | 0.6596 | 0.4400 | 0.021* | |
O3 | 0.4133 (2) | 0.5542 (3) | 0.3608 (2) | 0.0191 (6) | |
C3 | 0.3931 (3) | 0.4310 (4) | 0.2818 (3) | 0.0209 (7) | |
C4 | 0.4383 (4) | 0.4588 (4) | 0.1612 (3) | 0.0228 (8) | |
H4A | 0.3681 | 0.4881 | 0.1005 | 0.027* | |
H4B | 0.4706 | 0.3675 | 0.1328 | 0.027* | |
C5 | 0.5375 (4) | 0.5742 (4) | 0.1662 (3) | 0.0219 (8) | |
H5A | 0.5023 | 0.6673 | 0.1868 | 0.026* | |
H5B | 0.5606 | 0.5839 | 0.0841 | 0.026* | |
C6 | 0.7283 (4) | 0.6861 (4) | 0.2824 (4) | 0.0235 (8) | |
H6 | 0.6749 | 0.7590 | 0.3148 | 0.028* | |
C7 | 0.8404 (4) | 0.6626 (5) | 0.3782 (4) | 0.0297 (9) | |
H7A | 0.8811 | 0.7563 | 0.3983 | 0.036* | |
H7B | 0.8987 | 0.5993 | 0.3442 | 0.036* | |
C8 | 0.8085 (4) | 0.5947 (5) | 0.4944 (4) | 0.0269 (8) | |
H8A | 0.8841 | 0.5785 | 0.5524 | 0.032* | |
H8B | 0.7557 | 0.6613 | 0.5327 | 0.032* | |
C9 | 0.7127 (3) | 0.3693 (4) | 0.5778 (3) | 0.0193 (7) | |
H9 | 0.6861 | 0.2710 | 0.5481 | 0.023* | |
O10 | 0.5944 (2) | 0.4163 (3) | 0.7382 (2) | 0.0229 (6) | |
C10 | 0.6058 (3) | 0.4341 (4) | 0.6289 (3) | 0.0175 (7) | |
N11 | 0.5211 (2) | 0.5039 (4) | 0.5528 (2) | 0.0176 (5) | |
C11 | 0.6542 (3) | 0.5467 (4) | 0.2570 (3) | 0.0183 (7) | |
H11A | 0.7056 | 0.4781 | 0.2174 | 0.022* | |
H11 | 0.460 (4) | 0.527 (5) | 0.579 (4) | 0.020 (11)* | |
C12 | 0.7425 (3) | 0.4519 (4) | 0.4665 (3) | 0.0192 (7) | |
H12 | 0.7981 | 0.3891 | 0.4265 | 0.023* | |
C13 | 0.2582 (4) | 0.3959 (5) | 0.2692 (4) | 0.0311 (9) | |
H13A | 0.2379 | 0.3664 | 0.3482 | 0.047* | |
H13B | 0.2392 | 0.3172 | 0.2108 | 0.047* | |
H13C | 0.2104 | 0.4812 | 0.2405 | 0.047* | |
C14 | 0.7670 (4) | 0.7477 (6) | 0.1660 (4) | 0.0326 (8) | |
H14A | 0.8198 | 0.8315 | 0.1864 | 0.049* | |
H14B | 0.6943 | 0.7768 | 0.1100 | 0.049* | |
H14C | 0.8116 | 0.6739 | 0.1275 | 0.049* | |
C15 | 0.8233 (4) | 0.3468 (5) | 0.6759 (4) | 0.0309 (9) | |
H15A | 0.8482 | 0.4394 | 0.7141 | 0.046* | |
H15B | 0.8909 | 0.3066 | 0.6390 | 0.046* | |
H15C | 0.8018 | 0.2800 | 0.7374 | 0.046* | |
Br4 | 0.00338 (4) | 0.99999 (6) | 1.00460 (4) | 0.02935 (11) | |
O20 | 0.4469 (3) | 0.5614 (3) | 0.8454 (2) | 0.0224 (6) | |
C20 | 0.3400 (3) | 0.5854 (4) | 0.7813 (3) | 0.0172 (7) | |
H20 | 0.489 (4) | 0.505 (8) | 0.807 (4) | 0.038 (12)* | |
O21 | 0.3082 (2) | 0.5340 (3) | 0.6785 (2) | 0.0202 (5) | |
C21 | 0.2576 (3) | 0.6798 (4) | 0.8389 (3) | 0.0172 (7) | |
O22 | 0.0968 (3) | 0.6524 (3) | 0.6671 (3) | 0.0268 (6) | |
C22 | 0.1403 (3) | 0.7102 (4) | 0.7765 (3) | 0.0195 (8) | |
H22 | 0.156 (5) | 0.605 (7) | 0.652 (5) | 0.050 (17)* | |
C23 | 0.0647 (3) | 0.8052 (4) | 0.8268 (4) | 0.0219 (8) | |
H23 | −0.0150 | 0.8259 | 0.7861 | 0.026* | |
C24 | 0.1077 (3) | 0.8693 (4) | 0.9377 (3) | 0.0211 (8) | |
C25 | 0.2221 (4) | 0.8425 (4) | 1.0010 (3) | 0.0209 (7) | |
H25 | 0.2492 | 0.8875 | 1.0768 | 0.025* | |
C26 | 0.2962 (3) | 0.7474 (5) | 0.9497 (3) | 0.0184 (6) | |
H26 | 0.3758 | 0.7277 | 0.9914 | 0.022* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0178 (12) | 0.0124 (12) | 0.0225 (12) | −0.0014 (10) | 0.0007 (10) | −0.0015 (9) |
C1 | 0.0196 (16) | 0.0098 (18) | 0.0173 (15) | −0.0019 (12) | 0.0032 (12) | −0.0014 (12) |
O2 | 0.0158 (12) | 0.0183 (12) | 0.0269 (14) | −0.0022 (10) | −0.0016 (10) | 0.0051 (10) |
C2 | 0.0178 (17) | 0.0165 (16) | 0.0173 (16) | 0.0018 (13) | 0.0017 (13) | 0.0016 (12) |
O3 | 0.0152 (13) | 0.0187 (13) | 0.0228 (13) | 0.0036 (9) | 0.0010 (10) | 0.0015 (10) |
C3 | 0.0212 (19) | 0.0192 (18) | 0.0203 (18) | 0.0002 (15) | −0.0034 (14) | 0.0039 (14) |
C4 | 0.0270 (19) | 0.022 (2) | 0.0176 (16) | 0.0000 (14) | −0.0015 (14) | 0.0002 (12) |
C5 | 0.025 (2) | 0.0193 (18) | 0.0211 (18) | 0.0028 (15) | 0.0028 (14) | 0.0041 (14) |
C6 | 0.0245 (19) | 0.0148 (16) | 0.034 (2) | −0.0015 (15) | 0.0133 (16) | −0.0013 (15) |
C7 | 0.0218 (19) | 0.029 (2) | 0.040 (2) | −0.0082 (17) | 0.0110 (17) | −0.0032 (17) |
C8 | 0.0211 (19) | 0.028 (2) | 0.031 (2) | −0.0051 (16) | 0.0015 (16) | −0.0065 (16) |
C9 | 0.0192 (17) | 0.0215 (19) | 0.0175 (17) | 0.0060 (14) | 0.0031 (14) | −0.0016 (13) |
O10 | 0.0243 (14) | 0.0263 (14) | 0.0184 (13) | 0.0081 (11) | 0.0041 (10) | 0.0020 (11) |
C10 | 0.0183 (18) | 0.0170 (16) | 0.0165 (16) | 0.0006 (14) | 0.0003 (13) | −0.0044 (13) |
N11 | 0.0169 (13) | 0.0176 (13) | 0.0193 (12) | 0.0048 (15) | 0.0063 (10) | −0.0007 (15) |
C11 | 0.0197 (17) | 0.0156 (16) | 0.0211 (17) | 0.0021 (13) | 0.0076 (14) | 0.0003 (12) |
C12 | 0.0153 (17) | 0.0191 (17) | 0.0232 (17) | 0.0029 (13) | 0.0032 (13) | −0.0029 (12) |
C13 | 0.019 (2) | 0.034 (2) | 0.038 (2) | −0.0047 (16) | −0.0029 (16) | 0.0067 (17) |
C14 | 0.040 (2) | 0.0242 (18) | 0.039 (2) | 0.000 (2) | 0.0229 (17) | 0.002 (2) |
C15 | 0.023 (2) | 0.047 (3) | 0.0227 (19) | 0.0116 (19) | 0.0023 (15) | 0.0002 (18) |
Br4 | 0.02513 (18) | 0.03240 (19) | 0.03221 (19) | 0.00913 (18) | 0.00980 (13) | −0.00367 (18) |
O20 | 0.0232 (14) | 0.0245 (13) | 0.0200 (13) | 0.0088 (11) | 0.0046 (10) | 0.0016 (10) |
C20 | 0.0197 (17) | 0.0124 (16) | 0.0199 (17) | −0.0001 (13) | 0.0039 (13) | 0.0043 (13) |
O21 | 0.0213 (12) | 0.0172 (14) | 0.0230 (12) | −0.0018 (10) | 0.0065 (10) | −0.0013 (9) |
C21 | 0.0171 (17) | 0.0150 (16) | 0.0198 (17) | −0.0001 (14) | 0.0038 (13) | 0.0030 (13) |
O22 | 0.0193 (13) | 0.0320 (15) | 0.0281 (15) | −0.0009 (12) | 0.0007 (11) | −0.0092 (12) |
C22 | 0.0158 (17) | 0.0215 (19) | 0.0211 (17) | −0.0043 (13) | 0.0027 (14) | −0.0006 (12) |
C23 | 0.0140 (17) | 0.0239 (18) | 0.0270 (19) | 0.0002 (14) | 0.0005 (14) | 0.0013 (14) |
C24 | 0.0188 (18) | 0.0199 (18) | 0.0269 (19) | 0.0025 (14) | 0.0110 (15) | 0.0021 (14) |
C25 | 0.0243 (18) | 0.0224 (18) | 0.0166 (17) | 0.0021 (15) | 0.0049 (14) | 0.0022 (14) |
C26 | 0.0187 (15) | 0.0176 (14) | 0.0192 (15) | 0.0009 (18) | 0.0037 (12) | 0.0024 (16) |
Geometric parameters (Å, º) top
O1—C1 | 1.465 (4) | C8—C12 | 1.524 (5) |
O1—O2 | 1.470 (3) | C9—C10 | 1.514 (5) |
C1—C2 | 1.529 (5) | C9—C12 | 1.535 (5) |
C1—C11 | 1.542 (5) | C9—C15 | 1.529 (5) |
C1—C12 | 1.531 (5) | O10—C10 | 1.254 (5) |
O2—C3 | 1.416 (4) | C10—N11 | 1.334 (5) |
C2—O3 | 1.418 (4) | Br4—C24 | 1.903 (4) |
C2—N11 | 1.453 (5) | O20—C20 | 1.307 (4) |
O3—C3 | 1.440 (5) | C20—O21 | 1.242 (4) |
C3—C4 | 1.526 (5) | C20—C21 | 1.479 (5) |
C3—C13 | 1.515 (5) | C21—C22 | 1.408 (5) |
C4—C5 | 1.529 (5) | C21—C26 | 1.394 (5) |
C5—C11 | 1.538 (5) | O22—C22 | 1.352 (5) |
C6—C7 | 1.527 (6) | C22—C23 | 1.391 (5) |
C6—C11 | 1.536 (5) | C23—C24 | 1.389 (6) |
C6—C14 | 1.536 (5) | C24—C25 | 1.378 (5) |
C7—C8 | 1.528 (6) | C25—C26 | 1.386 (5) |
| | | |
C1—O1—O2 | 112.1 (2) | C15—C9—C12 | 113.5 (3) |
O1—C1—C2 | 110.2 (3) | O10—C10—C9 | 120.8 (3) |
O1—C1—C11 | 107.3 (3) | O10—C10—N11 | 121.1 (3) |
O1—C1—C12 | 104.3 (3) | N11—C10—C9 | 118.0 (3) |
C2—C1—C11 | 112.0 (3) | C10—N11—C2 | 127.7 (3) |
C2—C1—C12 | 110.7 (3) | C5—C11—C1 | 112.1 (3) |
C12—C1—C11 | 112.0 (3) | C6—C11—C1 | 112.3 (3) |
C3—O2—O1 | 107.4 (2) | C6—C11—C5 | 110.8 (3) |
O3—C2—C1 | 113.3 (3) | C1—C12—C9 | 110.4 (3) |
O3—C2—N11 | 108.9 (3) | C8—C12—C1 | 110.3 (3) |
N11—C2—C1 | 111.8 (3) | C8—C12—C9 | 115.1 (3) |
C2—O3—C3 | 113.6 (3) | O20—C20—C21 | 115.6 (3) |
O2—C3—O3 | 107.5 (3) | O21—C20—O20 | 123.1 (3) |
O2—C3—C4 | 112.2 (3) | O21—C20—C21 | 121.3 (3) |
O2—C3—C13 | 104.7 (3) | C22—C21—C20 | 119.3 (3) |
O3—C3—C4 | 111.3 (3) | C26—C21—C20 | 121.6 (3) |
O3—C3—C13 | 106.8 (3) | C26—C21—C22 | 119.0 (3) |
C13—C3—C4 | 113.9 (3) | O22—C22—C21 | 122.9 (3) |
C3—C4—C5 | 114.5 (3) | O22—C22—C23 | 117.4 (3) |
C4—C5—C11 | 115.9 (3) | C23—C22—C21 | 119.7 (3) |
C7—C6—C11 | 111.4 (3) | C24—C23—C22 | 118.9 (3) |
C7—C6—C14 | 110.0 (3) | C23—C24—Br4 | 118.3 (3) |
C11—C6—C14 | 111.5 (3) | C25—C24—Br4 | 118.7 (3) |
C6—C7—C8 | 112.5 (3) | C25—C24—C23 | 123.0 (3) |
C12—C8—C7 | 110.5 (3) | C24—C25—C26 | 117.4 (3) |
C10—C9—C12 | 112.4 (3) | C25—C26—C21 | 122.0 (3) |
C10—C9—C15 | 112.0 (3) | | |
| | | |
O1—C1—C2—O3 | −52.4 (4) | N11—C2—O3—C3 | −99.5 (3) |
O1—C1—C2—N11 | 71.1 (4) | C11—C1—C2—O3 | 66.9 (4) |
O1—C1—C11—C5 | 68.2 (3) | C11—C1—C2—N11 | −169.6 (3) |
O1—C1—C11—C6 | −166.3 (3) | C11—C1—C12—C8 | 55.9 (4) |
O1—C1—C12—C8 | 171.6 (3) | C11—C1—C12—C9 | −175.7 (3) |
O1—C1—C12—C9 | −60.1 (3) | C11—C6—C7—C8 | −53.1 (4) |
O1—O2—C3—O3 | −75.8 (3) | C12—C1—C2—O3 | −167.3 (3) |
O1—O2—C3—C4 | 46.9 (4) | C12—C1—C2—N11 | −43.7 (4) |
O1—O2—C3—C13 | 170.9 (3) | C12—C1—C11—C5 | −177.9 (3) |
C1—O1—O2—C3 | 46.6 (3) | C12—C1—C11—C6 | −52.4 (4) |
C1—C2—O3—C3 | 25.6 (4) | C12—C9—C10—O10 | −155.1 (3) |
C1—C2—N11—C10 | 23.8 (6) | C12—C9—C10—N11 | 28.3 (5) |
O2—O1—C1—C2 | 14.4 (3) | C13—C3—C4—C5 | 144.7 (4) |
O2—O1—C1—C11 | −107.7 (3) | C14—C6—C7—C8 | −177.3 (4) |
O2—O1—C1—C12 | 133.3 (3) | C14—C6—C11—C1 | 173.6 (3) |
O2—C3—C4—C5 | −96.5 (4) | C14—C6—C11—C5 | −60.2 (4) |
C2—C1—C11—C5 | −52.9 (4) | C15—C9—C10—O10 | −25.9 (5) |
C2—C1—C11—C6 | 72.7 (4) | C15—C9—C10—N11 | 157.5 (4) |
C2—C1—C12—C8 | −69.9 (4) | C15—C9—C12—C1 | −178.2 (3) |
C2—C1—C12—C9 | 58.5 (4) | C15—C9—C12—C8 | −52.6 (4) |
C2—O3—C3—O2 | 36.7 (4) | Br4—C24—C25—C26 | −179.7 (3) |
C2—O3—C3—C4 | −86.5 (4) | O20—C20—C21—C22 | −179.5 (3) |
C2—O3—C3—C13 | 148.6 (3) | O20—C20—C21—C26 | 5.0 (5) |
O3—C2—N11—C10 | 149.8 (4) | C20—C21—C22—O22 | 2.5 (5) |
O3—C3—C4—C5 | 24.0 (4) | C20—C21—C22—C23 | −176.5 (3) |
C3—C4—C5—C11 | 58.0 (4) | C20—C21—C26—C25 | 176.2 (3) |
C4—C5—C11—C1 | −36.3 (4) | O21—C20—C21—C22 | 1.0 (5) |
C4—C5—C11—C6 | −162.7 (3) | O21—C20—C21—C26 | −174.6 (3) |
C6—C7—C8—C12 | 57.3 (4) | C21—C22—C23—C24 | 0.6 (5) |
C7—C6—C11—C1 | 50.3 (4) | O22—C22—C23—C24 | −178.4 (3) |
C7—C6—C11—C5 | 176.5 (3) | C22—C21—C26—C25 | 0.7 (6) |
C7—C8—C12—C1 | −57.8 (4) | C22—C23—C24—Br4 | 179.6 (3) |
C7—C8—C12—C9 | 176.5 (3) | C22—C23—C24—C25 | −0.4 (6) |
C9—C10—N11—C2 | −16.0 (6) | C23—C24—C25—C26 | 0.2 (6) |
O10—C10—N11—C2 | 167.4 (4) | C24—C25—C26—C21 | −0.4 (6) |
C10—C9—C12—C1 | −49.9 (4) | C26—C21—C22—O22 | 178.2 (3) |
C10—C9—C12—C8 | 75.8 (4) | C26—C21—C22—C23 | −0.8 (5) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11···O21 | 0.81 (4) | 2.15 (4) | 2.931 (4) | 163 (4) |
O20—H20···O10 | 0.86 (6) | 1.70 (6) | 2.550 (4) | 169 (6) |
O22—H22···O21 | 0.83 (6) | 1.79 (6) | 2.574 (4) | 156 (6) |
Unit cells for coformers and cocrystals 1–4 all at 100 K topCompound | a | b | c | α | β | γ | V | Z | Mol. volume | Reference |
11-Aza | 11.71759 (15) | 11.71759 (15) | 9.48728 (13) | 90 | 90 | 120 | 1128.10 (3) | 3 | 376.0 | Nisar et al. (2018a) |
SalA | 4.8857 (5) | 11.2103 (7) | 11.2525 (11) | 90 | 92.581 (9) | 90 | 615.68 (9) | 4 | 153.7 | Nisar et al. (2018a) |
5-BrSalA | 6.9581 (7) | 7.1413 (8) | 8.0284 (9) | 81.959 (10) | 73.812 (10) | 71.352 (10) | 362.43 (8) | 2 | 181.2 | This work |
4-BrSalA | 3.8053 (2) | 14.6610 (8) | 12.9396 (7) | 90 | 97.320 (6) | 90 | 716.02 (7) | 4 | 179.0 | This work |
3,5-Br2SalA | 10.3703 (4) | 10.9444 (4) | 14.8108 (6) | 90 | 103.350 (4) | 90 | 1635.55 (10) | 8 | 204.4 | This work |
1 11-Aza:SalA | 9.79451 (14) | 9.30687 (13) | 11.51291 (16) | 90 | 92.3070 (12) | 90 | 1048.62 (3) | 2 | 524.3 | Nisar et al. (2018a) |
2 11-Aza: 5-BrSalA | 9.9325 (4) | 9.0196 (3) | 12.3942 (4) | 90 | 93.844 (3) | 90 | 1107.88 (6) | 2 | 554.0 | This work |
3 11-Aza2: 4-BrSalA | 11.0814 (2) | 9.28293 (18) | 11.1404 (2) | 90 | 98.638 (2) | 90 | 1132.99 (4) | 2 | 566.5 | This work |
4 11-Aza2: 35-Br2SalA | 9.52200 (19) | 9.3214 (2) | 13.3453 (3) | 90 | 99.6446 (19) | 90 | 1167.76 (4) | 2 | 583.9 | This work |
Geometry (Å, °) of lactam–acid R22(8) heterosynthons in
1–4 topCocrystal | O10···O20 | N11···O21 | C10═O10···O20—C20 |
1 | 2.549 (2) | 2.911 (2) | 41.6 |
2 | 2.541 (4) | 2.917 (5) | 31.7 |
3 | 2.550 (4) | 2.931 (4) | 40.8 |
4 | 2.542 (4) | 2.910 (5) | 37.6 |
Close contacts (Å) within and between 21 stacks for 1–4 top | 1 | 2 | 3 | 4 | Contact |
Intra-stack | | | | | |
O1—H11 | 2.780 | 2.631 | 2.987 | 2.826 | 11Aza-11Aza |
O2—H2/8a | 2.666/2.777 | 3.066/3.152 | 2.801/3.174 | 2.856/2.742 | 11Aza-11Aza |
O3—H9 | 2.432 | 2.703 | 2.574 | 2.478 | 11Aza-11Aza |
O10—H5a/6 | 2.808/2.922 | 3.199/3.065 | 2.731/3.296 | 2.710/2.773 | 11Aza-11Aza |
O20—H4a | 2.947 | 3.063 | 3.169 | 3.071 | SalA–11Aza |
O21—H6/14b | 2.825/2.900 | 2.742/3.482 | 2.560/2.908 | 2.885/2.885 | SalA–11Aza |
O22—H12 | 2.913 | 2.883 | 2.763 | 2.689 | SalA–11Aza |
| | | | | |
Inter-stack | | | | | |
O22—H24/ | 2.888 | 3.885 | /Br4 4.223 | 4.536 | SalA–SalA |
O20—H5a | 2.820 | 3.593 | 2.774 | 5.629 | 11Aza–SalA |
O22—H13b | 2.636 | 2.677 | 4.424 | 5.437 | 11Aza–SalA |
H5a—H26 | 2.445 | 2.535 | 2.531 | 3.653 | 11Aza–SalA |
O10—H25/ | 2.520 | /Br5 3.022 | 2.500 | /H4b 2.527 | SalA–11Aza |
O22—H8a | 3.970 | 4.294 | 2.599 | 4.384 | 11Aza–SalA |
H8a—H15b | 2.811 | 3.045 | 4.104 | 5.955 | 11Aza-11Aza |
O20—H13c | – | 8.594 | 5.459 | 2.810 | 11Aza–SalA |
O22—Br5 | – | 3.911 | – | 3.530 | SalA–SalA |
Hydrogen-bond comparison (Å) in coformers and cocrystals topCocrystal | 11-Aza N—H···O | Cocrystal N—H···O | Acid O—H···.O | Cocrystal O—H···O |
1 11-Aza:SalA | 3.033 (2) | 2.911 (2) | 2.651 (1) | 2.549 (2) |
2 11-Aza:5-Br-SalA | – | 2.917 (5) | 2.645 (3) | 2.541 (4) |
3 11-Aza2:4-Br-SalA | – | 2.931 (4) | 2.665 (5) | 2.550 (4) |
4 11-Aza2:3,5-Br2-SalA | – | 2.910 (5) | 2.666 (3) | 2.542 (4) |
Data for cocrystal 1 and 11-Aza are taken from Nisar et al.
(2018a) and acids and cocrystals 2–4 are from
this work. |
Specific volumes (Å3) for cocrystals 1–4 at 100 K topCocrystal | Acid volumea | Combined volumeb | Cocrystal volumec | Difference in specific volume ΔV |
1 11-Aza:SalA | 153.7 | 529.7 | 524.3 | -5.4 (-1.1%) |
2 11-Aza:5-Br-SalA | 181.2 | 557.2 | 554.0 | -3.2 (-0.6%) |
3 11-Aza2:4-Br-SalA | 179.0 | 555.0 | 566.5 | +11.5 (+2.1%) |
4 11-Aza2:3,5-Br2-SalA | 204.4 | 580.4 | 583.9 | +3.5 (+0.6%) |
Notes: (a) acid volumes from unit cells measured at 100 K (see Table 3);
(b) specific volume of 376.0 Å for 11-azaartemisinin at 100 K (Nisar
et al., 2018a);
(c) corresponding combined volume from cocrystal structures
1–4. |
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