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The antibiotic nitrofurantoin {systematic name: (
E)-1-[(5-nitro-2-furyl)methylideneamino]imidazolidine-2,4-dione} is not only used for the treatment of urinary tract infections, but also illegally applied as an animal food additive. Since derivatives of 2,6-diaminopyridine might serve as artificial receptors for its recognition, we crystallized one potential drug–receptor complex, nitrofurantoin–2,6-diacetamidopyridine (1/1), C
8H
6N
4O
5·C
9H
11N
3O
2, (I·II). It is characterized by one N—H
N and two N—H
O hydrogen bonds and confirms a previous NMR study. During the crystallization screening, several new pseudopolymorphs of both components were obtained, namely a nitrofurantoin dimethyl sulfoxide monosolvate, C
8H
6N
4O
5·C
2H
6OS, (I
a), a nitrofurantoin dimethyl sulfoxide hemisolvate, C
8H
6N
4O
5·0.5C
2H
6OS, (I
b), two nitrofurantoin dimethylacetamide monosolvates, C
8H
6N
4O
5·C
4H
9NO, (I
c) and (I
d), and a nitrofurantoin dimethylacetamide disolvate, C
8H
6N
4O
5·2C
4H
9NO, (I
e), as well as a 2,6-diacetamidopyridine dimethylformamide monosolvate, C
9H
11N
3O
2·C
3H
7NO, (II
a). Of these, (I
a), (I
c) and (I
d) were formed during cocrystallization attempts with 1-(4-fluorophenyl)biguanide hydrochloride. Obviously nitrofurantoin prefers the higher-energy conformation in the crystal structures, which all exhibit N—H
O and C—H
O hydrogen-bond interactions. The latter are especially important for the crystal packing. 2,6-Diacetamidopyridine shows some conformational flexibility depending on the hydrogen-bond pattern.
Supporting information
CCDC references: 813494; 813495; 813496; 813497; 813498; 813499; 813500
Single crystals of (Ia), (Ic) and (Id) were obtained by
cocrystallization of commercially available nitrofurantoin with
1-(4-fluorophenyl)biguanide hydrochloride (Table 8). Solvent evaporation
experiments with mixtures of nitrofurantoin and 2,6-diacetaminopyridine
yielded (Ib), (Ie) and the cocrystal, (I.II) (Table 9).
For the preparation of compound (II), 2,6-diaminopyridine (5 g, 0.046 mol) was
added to a solution of acetic acid anhydride (10.4 ml, 0.055 mol) in
1,4-dioxane (100 ml) under a nitrogen atmosphere. The reaction mixture was
heated at reflux for 24 h. After cooling to room temperature, the solvent was
removed using a rotary evaporator. Unreacted 2,6-diaminopyridine and acetic
acid anhydride were rinsed away with water. 11.5 mg of 2,6-diacetaminopyridine
dissolved in dimethylformamide (200 µl) at 323 K yielded (II).
Crystals (Ia), (Id) and (I.II) show Rint-values higher
than 0.100: 0.176 (Ia), 0.147 (Id) and 0.138 (I.II), although
the data sets were collected with high redundancy: 6.52 (Ia), 6.32
(Id) and 8.98 (I.II). (Ia) and (Id) did not diffract very
strongly [Rσ values: 0.106 (Ia) and 0.099 (Id)], but
there is no obvious reason for (I.II). However, all other important quality
criteria are satisfied.
The H atoms, except those bonded to disordered solvent atoms, were initially
located by difference Fourier synthesis. Subsequently, H atoms bonded to C
atoms were refined using a riding model, with methyl C—H = 0.98 Å,
secondary C—H = 0.99 Å and aromatic C—H = 0.95 Å and with
Uiso(H) = 1.5Ueq(C) for methyl H or 1.2Ueq(C) for
secondary and aromatic H. H atoms bonded to N atoms were refined
isotropically.
In (Ib), the O atom of the dimethyl sulfoxide lies on a twofold axis so
that the S atom is disordered. In (Ic), (Id) and (Ie),
all solvent atoms except O are disordered over two positions, but the
disordered methyl C atoms coincide pairwise thus forming a rectangular
arrangement together with the O atom. The site-occupation factors for the
major occupied orientations are 0.646 (7) in (Ic), 0.53 (1) in
(Id), 0.926 (5) and 0.882 (6) in (Ie). For the minor occupied
orientations of both solvent molecules in (Ie), similarity restraints
were applied and the carbonyl C and the N atoms were refined isotropically.
In (II), the methyl groups of 2,6-diacetaminopyridine are rotationally
disordered over two positions, with site-occupation factors of 0.58 (5) and
0.66 (2) for the major occupied orientations.
For all compounds, data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA (Stoe & Cie, 2001); data reduction: X-AREA (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008) and XP (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2010).
(Ia) (
E)-1-[(5-nitro-2-furyl)methylideneamino]imidazolidine-2,4-dione
dimethyl sulfoxide monosolvate
top
Crystal data top
C8H6N4O5·C2H6OS | F(000) = 656 |
Mr = 316.30 | Dx = 1.520 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 6.6257 (4) Å | Cell parameters from 5085 reflections |
b = 26.488 (2) Å | θ = 3.5–25.8° |
c = 8.0032 (5) Å | µ = 0.27 mm−1 |
β = 100.347 (5)° | T = 173 K |
V = 1381.73 (16) Å3 | Block, yellow |
Z = 4 | 0.40 × 0.20 × 0.20 mm |
Data collection top
Stoe IPDS II two-circle diffractometer | 2437 independent reflections |
Radiation source: fine-focus sealed tube | 1588 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.176 |
ω scans | θmax = 25.0°, θmin = 3.5° |
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995) | h = −7→7 |
Tmin = 0.900, Tmax = 0.948 | k = −31→31 |
15878 measured reflections | l = −9→9 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.110 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.89 | w = 1/[σ2(Fo2) + (0.0422P)2] where P = (Fo2 + 2Fc2)/3 |
2437 reflections | (Δ/σ)max < 0.001 |
196 parameters | Δρmax = 0.28 e Å−3 |
0 restraints | Δρmin = −0.53 e Å−3 |
Crystal data top
C8H6N4O5·C2H6OS | V = 1381.73 (16) Å3 |
Mr = 316.30 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.6257 (4) Å | µ = 0.27 mm−1 |
b = 26.488 (2) Å | T = 173 K |
c = 8.0032 (5) Å | 0.40 × 0.20 × 0.20 mm |
β = 100.347 (5)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 2437 independent reflections |
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995) | 1588 reflections with I > 2σ(I) |
Tmin = 0.900, Tmax = 0.948 | Rint = 0.176 |
15878 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.110 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.89 | Δρmax = 0.28 e Å−3 |
2437 reflections | Δρmin = −0.53 e Å−3 |
196 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.7086 (4) | 0.37863 (10) | 0.4536 (4) | 0.0263 (6) | |
H1 | 0.808 (6) | 0.3612 (14) | 0.417 (5) | 0.031 (10)* | |
C2 | 0.7313 (5) | 0.41820 (12) | 0.5674 (4) | 0.0255 (7) | |
O21 | 0.8912 (3) | 0.43666 (10) | 0.6389 (3) | 0.0374 (6) | |
N3 | 0.5355 (4) | 0.43282 (10) | 0.5848 (4) | 0.0247 (6) | |
C4 | 0.3781 (5) | 0.40286 (13) | 0.4784 (4) | 0.0283 (8) | |
H4A | 0.2874 | 0.4242 | 0.3953 | 0.034* | |
H4B | 0.2939 | 0.3839 | 0.5475 | 0.034* | |
C5 | 0.5071 (5) | 0.36756 (13) | 0.3910 (5) | 0.0292 (8) | |
O51 | 0.4452 (4) | 0.33599 (10) | 0.2849 (4) | 0.0421 (7) | |
N6 | 0.5106 (4) | 0.47279 (9) | 0.6863 (3) | 0.0230 (6) | |
C7 | 0.3239 (5) | 0.48193 (12) | 0.7029 (4) | 0.0240 (7) | |
H7 | 0.2155 | 0.4614 | 0.6457 | 0.029* | |
C8 | 0.2799 (4) | 0.52292 (12) | 0.8074 (4) | 0.0240 (7) | |
O9 | 0.4395 (3) | 0.55309 (8) | 0.8855 (3) | 0.0239 (5) | |
C10 | 0.3505 (5) | 0.58815 (12) | 0.9710 (4) | 0.0278 (8) | |
C11 | 0.1459 (5) | 0.58211 (13) | 0.9555 (4) | 0.0300 (8) | |
H11 | 0.0531 | 0.6021 | 1.0049 | 0.036* | |
C12 | 0.1002 (5) | 0.53948 (12) | 0.8496 (4) | 0.0276 (8) | |
H12 | −0.0315 | 0.5249 | 0.8140 | 0.033* | |
N13 | 0.4882 (5) | 0.62297 (11) | 1.0693 (4) | 0.0341 (7) | |
O14 | 0.6726 (4) | 0.61732 (10) | 1.0802 (4) | 0.0434 (7) | |
O15 | 0.4070 (4) | 0.65681 (10) | 1.1426 (4) | 0.0463 (7) | |
O1A | 1.0023 (3) | 0.31445 (9) | 0.3776 (3) | 0.0315 (6) | |
S2A | 1.01025 (13) | 0.28756 (3) | 0.21177 (11) | 0.0271 (2) | |
C3A | 1.1797 (6) | 0.23559 (14) | 0.2655 (5) | 0.0391 (9) | |
H3A1 | 1.3190 | 0.2481 | 0.3061 | 0.059* | |
H3A2 | 1.1787 | 0.2144 | 0.1649 | 0.059* | |
H3A3 | 1.1347 | 0.2156 | 0.3550 | 0.059* | |
C4A | 0.7764 (6) | 0.25235 (14) | 0.1625 (5) | 0.0383 (9) | |
H4A1 | 0.7651 | 0.2296 | 0.2570 | 0.058* | |
H4A2 | 0.7764 | 0.2325 | 0.0591 | 0.058* | |
H4A3 | 0.6596 | 0.2757 | 0.1446 | 0.058* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0224 (14) | 0.0276 (15) | 0.0298 (16) | −0.0008 (12) | 0.0070 (11) | −0.0046 (13) |
C2 | 0.0246 (16) | 0.0270 (17) | 0.0261 (18) | −0.0005 (14) | 0.0077 (14) | 0.0016 (15) |
O21 | 0.0181 (12) | 0.0494 (16) | 0.0444 (16) | −0.0073 (11) | 0.0047 (11) | −0.0165 (13) |
N3 | 0.0180 (12) | 0.0218 (13) | 0.0341 (16) | −0.0031 (10) | 0.0044 (11) | −0.0074 (12) |
C4 | 0.0221 (16) | 0.0278 (18) | 0.035 (2) | −0.0033 (13) | 0.0041 (14) | −0.0080 (15) |
C5 | 0.0236 (16) | 0.0275 (18) | 0.037 (2) | −0.0052 (14) | 0.0054 (14) | −0.0039 (16) |
O51 | 0.0342 (14) | 0.0426 (16) | 0.0507 (17) | −0.0113 (12) | 0.0109 (12) | −0.0238 (14) |
N6 | 0.0246 (14) | 0.0198 (13) | 0.0252 (15) | −0.0002 (11) | 0.0058 (11) | −0.0008 (11) |
C7 | 0.0216 (16) | 0.0198 (15) | 0.0302 (19) | −0.0030 (12) | 0.0032 (13) | 0.0004 (14) |
C8 | 0.0203 (15) | 0.0217 (16) | 0.0287 (18) | 0.0006 (12) | 0.0010 (13) | 0.0030 (14) |
O9 | 0.0216 (11) | 0.0206 (11) | 0.0287 (13) | −0.0001 (9) | 0.0026 (10) | −0.0045 (10) |
C10 | 0.0323 (18) | 0.0254 (18) | 0.0257 (18) | 0.0040 (13) | 0.0055 (14) | −0.0011 (15) |
C11 | 0.0325 (18) | 0.0292 (18) | 0.0297 (19) | 0.0067 (14) | 0.0096 (15) | 0.0020 (15) |
C12 | 0.0236 (17) | 0.0260 (18) | 0.033 (2) | 0.0037 (13) | 0.0054 (14) | 0.0056 (15) |
N13 | 0.0414 (18) | 0.0266 (16) | 0.0345 (18) | 0.0015 (13) | 0.0069 (13) | −0.0039 (14) |
O14 | 0.0334 (15) | 0.0403 (16) | 0.0531 (18) | −0.0056 (11) | −0.0012 (12) | −0.0062 (13) |
O15 | 0.0623 (17) | 0.0329 (15) | 0.0445 (16) | 0.0024 (13) | 0.0120 (14) | −0.0132 (13) |
O1A | 0.0326 (13) | 0.0329 (13) | 0.0306 (14) | 0.0056 (10) | 0.0097 (10) | −0.0077 (11) |
S2A | 0.0302 (4) | 0.0244 (4) | 0.0286 (4) | 0.0028 (4) | 0.0105 (3) | 0.0009 (4) |
C3A | 0.043 (2) | 0.0307 (19) | 0.043 (2) | 0.0124 (16) | 0.0065 (17) | −0.0025 (18) |
C4A | 0.040 (2) | 0.036 (2) | 0.042 (2) | −0.0081 (16) | 0.0148 (17) | −0.0073 (18) |
Geometric parameters (Å, º) top
N1—C5 | 1.371 (4) | C10—C11 | 1.348 (5) |
N1—C2 | 1.379 (4) | C10—N13 | 1.430 (4) |
N1—H1 | 0.89 (4) | C11—C12 | 1.412 (5) |
C2—O21 | 1.213 (4) | C11—H11 | 0.9500 |
C2—N3 | 1.384 (4) | C12—H12 | 0.9500 |
N3—N6 | 1.362 (4) | N13—O14 | 1.218 (4) |
N3—C4 | 1.457 (4) | N13—O15 | 1.245 (4) |
C4—C5 | 1.520 (5) | O1A—S2A | 1.516 (2) |
C4—H4A | 0.9900 | S2A—C3A | 1.780 (3) |
C4—H4B | 0.9900 | S2A—C4A | 1.791 (4) |
C5—O51 | 1.209 (4) | C3A—H3A1 | 0.9800 |
N6—C7 | 1.290 (4) | C3A—H3A2 | 0.9800 |
C7—C8 | 1.432 (4) | C3A—H3A3 | 0.9800 |
C7—H7 | 0.9500 | C4A—H4A1 | 0.9800 |
C8—O9 | 1.382 (4) | C4A—H4A2 | 0.9800 |
C8—C12 | 1.366 (4) | C4A—H4A3 | 0.9800 |
O9—C10 | 1.351 (4) | | |
| | | |
C5—N1—C2 | 112.8 (3) | C11—C10—N13 | 131.2 (3) |
C5—N1—H1 | 120 (2) | O9—C10—N13 | 115.4 (3) |
C2—N1—H1 | 128 (2) | C10—C11—C12 | 104.7 (3) |
O21—C2—N3 | 126.5 (3) | C10—C11—H11 | 127.6 |
O21—C2—N1 | 126.9 (3) | C12—C11—H11 | 127.6 |
N3—C2—N1 | 106.6 (3) | C8—C12—C11 | 107.6 (3) |
N6—N3—C2 | 119.6 (2) | C8—C12—H12 | 126.2 |
N6—N3—C4 | 128.4 (2) | C11—C12—H12 | 126.2 |
C2—N3—C4 | 112.0 (3) | O14—N13—O15 | 124.5 (3) |
N3—C4—C5 | 101.6 (2) | O14—N13—C10 | 119.5 (3) |
N3—C4—H4A | 111.4 | O15—N13—C10 | 115.9 (3) |
C5—C4—H4A | 111.4 | O1A—S2A—C3A | 105.77 (17) |
N3—C4—H4B | 111.4 | O1A—S2A—C4A | 105.81 (16) |
C5—C4—H4B | 111.4 | C3A—S2A—C4A | 97.69 (19) |
H4A—C4—H4B | 109.3 | S2A—C3A—H3A1 | 109.5 |
O51—C5—N1 | 126.1 (3) | S2A—C3A—H3A2 | 109.5 |
O51—C5—C4 | 126.9 (3) | H3A1—C3A—H3A2 | 109.5 |
N1—C5—C4 | 106.9 (3) | S2A—C3A—H3A3 | 109.5 |
C7—N6—N3 | 115.4 (3) | H3A1—C3A—H3A3 | 109.5 |
N6—C7—C8 | 120.1 (3) | H3A2—C3A—H3A3 | 109.5 |
N6—C7—H7 | 119.9 | S2A—C4A—H4A1 | 109.5 |
C8—C7—H7 | 119.9 | S2A—C4A—H4A2 | 109.5 |
O9—C8—C12 | 109.4 (3) | H4A1—C4A—H4A2 | 109.5 |
O9—C8—C7 | 118.9 (3) | S2A—C4A—H4A3 | 109.5 |
C12—C8—C7 | 131.7 (3) | H4A1—C4A—H4A3 | 109.5 |
C10—O9—C8 | 105.0 (2) | H4A2—C4A—H4A3 | 109.5 |
C11—C10—O9 | 113.3 (3) | | |
| | | |
C5—N1—C2—O21 | −178.1 (3) | N6—C7—C8—O9 | 1.8 (5) |
C5—N1—C2—N3 | 2.0 (4) | N6—C7—C8—C12 | −177.9 (3) |
O21—C2—N3—N6 | 2.4 (5) | C12—C8—O9—C10 | −1.2 (3) |
N1—C2—N3—N6 | −177.7 (3) | C7—C8—O9—C10 | 179.0 (3) |
O21—C2—N3—C4 | 179.3 (3) | C8—O9—C10—C11 | 1.0 (4) |
N1—C2—N3—C4 | −0.8 (4) | C8—O9—C10—N13 | 177.5 (3) |
N6—N3—C4—C5 | 176.1 (3) | O9—C10—C11—C12 | −0.4 (4) |
C2—N3—C4—C5 | −0.5 (4) | N13—C10—C11—C12 | −176.1 (3) |
C2—N1—C5—O51 | 177.0 (4) | O9—C8—C12—C11 | 1.0 (4) |
C2—N1—C5—C4 | −2.3 (4) | C7—C8—C12—C11 | −179.2 (3) |
N3—C4—C5—O51 | −177.7 (4) | C10—C11—C12—C8 | −0.4 (4) |
N3—C4—C5—N1 | 1.6 (4) | C11—C10—N13—O14 | 170.7 (4) |
C2—N3—N6—C7 | −176.1 (3) | O9—C10—N13—O14 | −5.0 (5) |
C4—N3—N6—C7 | 7.5 (5) | C11—C10—N13—O15 | −7.4 (5) |
N3—N6—C7—C8 | 179.7 (3) | O9—C10—N13—O15 | 176.9 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1A | 0.89 (4) | 1.86 (4) | 2.733 (4) | 167 (3) |
C7—H7···O21i | 0.95 | 2.24 | 3.065 (4) | 145 |
Symmetry code: (i) x−1, y, z. |
(Ib) (
E)-1-[(5-nitro-2-furyl)methylideneamino]imidazolidine-2,4-dione
dimethyl sulfoxide hemisolvate
top
Crystal data top
C8H6N4O5·0.5(C2H6OS) | F(000) = 1144 |
Mr = ? | Dx = 1.633 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
a = 16.1710 (11) Å | Cell parameters from 10186 reflections |
b = 13.7985 (8) Å | θ = 3.6–26.1° |
c = 10.3465 (8) Å | µ = 0.22 mm−1 |
β = 102.358 (6)° | T = 173 K |
V = 2255.2 (3) Å3 | Block, yellow |
Z = 8 | 0.50 × 0.40 × 0.20 mm |
Data collection top
Stoe IPDS II two-circle diffractometer | 2116 independent reflections |
Radiation source: fine-focus sealed tube | 1806 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.098 |
ω scans | θmax = 25.6°, θmin = 3.6° |
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995) | h = −19→19 |
Tmin = 0.896, Tmax = 0.957 | k = −16→16 |
13781 measured reflections | l = −12→12 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0611P)2 + 0.1688P] where P = (Fo2 + 2Fc2)/3 |
2116 reflections | (Δ/σ)max < 0.001 |
181 parameters | Δρmax = 0.28 e Å−3 |
0 restraints | Δρmin = −0.32 e Å−3 |
Crystal data top
C8H6N4O5·0.5(C2H6OS) | V = 2255.2 (3) Å3 |
Mr = ? | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 16.1710 (11) Å | µ = 0.22 mm−1 |
b = 13.7985 (8) Å | T = 173 K |
c = 10.3465 (8) Å | 0.50 × 0.40 × 0.20 mm |
β = 102.358 (6)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 2116 independent reflections |
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995) | 1806 reflections with I > 2σ(I) |
Tmin = 0.896, Tmax = 0.957 | Rint = 0.098 |
13781 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.28 e Å−3 |
2116 reflections | Δρmin = −0.32 e Å−3 |
181 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
N1 | 0.55503 (9) | 0.28434 (10) | 0.47191 (13) | 0.0248 (3) | |
H1 | 0.5384 (16) | 0.2546 (17) | 0.399 (3) | 0.049 (6)* | |
C2 | 0.56931 (10) | 0.23377 (11) | 0.59100 (15) | 0.0223 (3) | |
O21 | 0.56260 (9) | 0.14817 (8) | 0.60474 (11) | 0.0333 (3) | |
N3 | 0.59366 (9) | 0.30307 (9) | 0.68891 (12) | 0.0230 (3) | |
C4 | 0.59851 (11) | 0.39981 (11) | 0.63492 (15) | 0.0249 (4) | |
H4A | 0.6569 | 0.4258 | 0.6582 | 0.030* | |
H4B | 0.5596 | 0.4453 | 0.6661 | 0.030* | |
C5 | 0.57099 (10) | 0.38098 (12) | 0.48737 (15) | 0.0251 (3) | |
O51 | 0.56544 (8) | 0.44117 (9) | 0.39996 (11) | 0.0365 (3) | |
N6 | 0.61420 (8) | 0.27458 (9) | 0.81746 (12) | 0.0221 (3) | |
C7 | 0.64003 (10) | 0.34106 (11) | 0.90363 (14) | 0.0228 (3) | |
H7 | 0.6438 | 0.4067 | 0.8780 | 0.027* | |
C8 | 0.66312 (10) | 0.31228 (11) | 1.04115 (14) | 0.0221 (3) | |
O9 | 0.69640 (7) | 0.38476 (8) | 1.12747 (10) | 0.0243 (3) | |
C10 | 0.71209 (10) | 0.34230 (12) | 1.24842 (14) | 0.0236 (3) | |
C11 | 0.69100 (11) | 0.24745 (12) | 1.24310 (16) | 0.0269 (4) | |
H11 | 0.6963 | 0.2035 | 1.3150 | 0.032* | |
C12 | 0.65936 (10) | 0.22773 (12) | 1.10748 (15) | 0.0267 (4) | |
H12 | 0.6393 | 0.1671 | 1.0698 | 0.032* | |
N13 | 0.74641 (9) | 0.40287 (10) | 1.35737 (13) | 0.0270 (3) | |
O14 | 0.76313 (8) | 0.48756 (9) | 1.33718 (11) | 0.0331 (3) | |
O15 | 0.75653 (8) | 0.36511 (10) | 1.46809 (11) | 0.0367 (3) | |
O1A | 0.5000 | 0.16833 (11) | 0.2500 | 0.0283 (4) | |
S2A | 0.52129 (5) | 0.06598 (5) | 0.19909 (7) | 0.0209 (2) | 0.50 |
C3A | 0.42509 (12) | 0.00521 (12) | 0.15938 (17) | 0.0328 (4) | |
H3AA | 0.4097 | −0.0598 | 0.1836 | 0.049* | 0.50 |
H3AB | 0.3738 | 0.0413 | 0.1194 | 0.049* | 0.50 |
H3AC | 0.4619 | 0.0003 | 0.0955 | 0.049* | 0.50 |
H3AD | 0.4341 | −0.0597 | 0.1265 | 0.049* | 0.50 |
H3AE | 0.4011 | 0.0000 | 0.2383 | 0.049* | 0.50 |
H3AF | 0.3860 | 0.0413 | 0.0905 | 0.049* | 0.50 |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0287 (7) | 0.0287 (7) | 0.0149 (6) | −0.0048 (6) | 0.0001 (5) | −0.0006 (5) |
C2 | 0.0244 (8) | 0.0246 (8) | 0.0179 (7) | −0.0015 (6) | 0.0045 (6) | −0.0009 (6) |
O21 | 0.0521 (8) | 0.0220 (6) | 0.0249 (6) | −0.0049 (5) | 0.0062 (5) | −0.0017 (5) |
N3 | 0.0326 (7) | 0.0206 (6) | 0.0139 (6) | −0.0012 (5) | 0.0008 (5) | 0.0017 (5) |
C4 | 0.0331 (9) | 0.0211 (8) | 0.0179 (7) | −0.0007 (6) | 0.0001 (6) | 0.0027 (6) |
C5 | 0.0250 (8) | 0.0284 (8) | 0.0194 (7) | −0.0014 (6) | −0.0007 (6) | 0.0045 (6) |
O51 | 0.0467 (8) | 0.0360 (7) | 0.0224 (6) | −0.0034 (6) | −0.0026 (5) | 0.0118 (5) |
N6 | 0.0262 (7) | 0.0245 (7) | 0.0144 (6) | 0.0012 (5) | 0.0017 (5) | 0.0030 (5) |
C7 | 0.0276 (8) | 0.0224 (7) | 0.0176 (7) | 0.0005 (6) | 0.0029 (6) | 0.0014 (6) |
C8 | 0.0232 (8) | 0.0254 (8) | 0.0170 (7) | 0.0009 (6) | 0.0024 (6) | −0.0024 (6) |
O9 | 0.0306 (6) | 0.0253 (6) | 0.0150 (5) | 0.0010 (4) | 0.0006 (4) | 0.0006 (4) |
C10 | 0.0255 (8) | 0.0302 (8) | 0.0139 (7) | 0.0026 (6) | 0.0015 (6) | 0.0020 (6) |
C11 | 0.0292 (8) | 0.0312 (8) | 0.0192 (7) | 0.0022 (7) | 0.0028 (6) | 0.0059 (6) |
C12 | 0.0313 (9) | 0.0263 (8) | 0.0215 (8) | −0.0014 (7) | 0.0033 (6) | 0.0007 (6) |
N13 | 0.0261 (7) | 0.0342 (8) | 0.0185 (7) | 0.0038 (6) | 0.0000 (5) | −0.0004 (5) |
O14 | 0.0387 (7) | 0.0295 (6) | 0.0277 (6) | 0.0009 (5) | −0.0006 (5) | −0.0034 (5) |
O15 | 0.0433 (8) | 0.0480 (8) | 0.0149 (6) | −0.0020 (6) | −0.0028 (5) | 0.0037 (5) |
O1A | 0.0396 (10) | 0.0186 (8) | 0.0236 (8) | 0.000 | −0.0004 (7) | 0.000 |
S2A | 0.0270 (4) | 0.0197 (4) | 0.0152 (3) | −0.0005 (3) | 0.0031 (3) | −0.0002 (3) |
C3A | 0.0358 (9) | 0.0255 (8) | 0.0317 (9) | −0.0012 (7) | −0.0051 (7) | 0.0008 (7) |
Geometric parameters (Å, º) top
N1—C5 | 1.361 (2) | C11—C12 | 1.413 (2) |
N1—C2 | 1.3916 (19) | C11—H11 | 0.9500 |
N1—H1 | 0.85 (3) | C12—H12 | 0.9500 |
C2—O21 | 1.1975 (19) | N13—O14 | 1.2274 (19) |
C2—N3 | 1.387 (2) | N13—O15 | 1.2371 (18) |
N3—N6 | 1.3582 (17) | O1A—S2Ai | 1.5710 (15) |
N3—C4 | 1.4556 (19) | O1A—S2A | 1.5710 (15) |
C4—C5 | 1.518 (2) | S2A—S2Ai | 1.3763 (15) |
C4—H4A | 0.9900 | S2A—C3A | 1.7374 (19) |
C4—H4B | 0.9900 | S2A—C3Ai | 1.7482 (18) |
C5—O51 | 1.2170 (19) | S2A—H3AC | 1.5663 |
N6—C7 | 1.285 (2) | C3A—S2Ai | 1.7482 (18) |
C7—C8 | 1.447 (2) | C3A—H3AA | 0.9782 |
C7—H7 | 0.9500 | C3A—H3AB | 0.9800 |
C8—C12 | 1.362 (2) | C3A—H3AC | 0.9817 |
C8—O9 | 1.3718 (18) | C3A—H3AD | 0.9797 |
O9—C10 | 1.3557 (18) | C3A—H3AE | 0.9781 |
C10—C11 | 1.351 (2) | C3A—H3AF | 0.9807 |
C10—N13 | 1.418 (2) | | |
| | | |
C5—N1—C2 | 113.31 (13) | S2Ai—O1A—S2A | 51.96 (7) |
C5—N1—H1 | 126.3 (16) | S2Ai—S2A—O1A | 64.02 (4) |
C2—N1—H1 | 120.4 (16) | S2Ai—S2A—C3A | 67.16 (8) |
O21—C2—N1 | 126.70 (14) | O1A—S2A—C3A | 105.30 (7) |
O21—C2—N3 | 127.73 (14) | S2Ai—S2A—C3Ai | 66.33 (8) |
N1—C2—N3 | 105.57 (13) | O1A—S2A—C3Ai | 104.80 (7) |
N6—N3—C2 | 119.17 (12) | C3A—S2A—C3Ai | 103.01 (11) |
N6—N3—C4 | 128.26 (12) | S2Ai—S2A—H3AC | 100.9 |
C2—N3—C4 | 112.46 (12) | O1A—S2A—H3AC | 127.1 |
N3—C4—C5 | 101.57 (12) | C3Ai—S2A—H3AC | 114.7 |
N3—C4—H4A | 111.5 | S2A—C3A—S2Ai | 46.51 (6) |
C5—C4—H4A | 111.5 | S2A—C3A—H3AA | 130.3 |
N3—C4—H4B | 111.5 | S2Ai—C3A—H3AA | 109.4 |
C5—C4—H4B | 111.5 | S2A—C3A—H3AB | 119.2 |
H4A—C4—H4B | 109.3 | S2Ai—C3A—H3AB | 109.4 |
O51—C5—N1 | 126.82 (15) | H3AA—C3A—H3AB | 109.6 |
O51—C5—C4 | 126.12 (15) | S2A—C3A—H3AC | 63.4 |
N1—C5—C4 | 107.06 (13) | S2Ai—C3A—H3AC | 109.5 |
C7—N6—N3 | 116.61 (13) | H3AA—C3A—H3AC | 109.5 |
N6—C7—C8 | 117.61 (14) | H3AB—C3A—H3AC | 109.3 |
N6—C7—H7 | 121.2 | S2A—C3A—H3AD | 109.4 |
C8—C7—H7 | 121.2 | S2Ai—C3A—H3AD | 130.2 |
C12—C8—O9 | 110.50 (13) | H3AA—C3A—H3AD | 46.8 |
C12—C8—C7 | 134.49 (14) | H3AB—C3A—H3AD | 119.6 |
O9—C8—C7 | 115.01 (13) | H3AC—C3A—H3AD | 63.1 |
C10—O9—C8 | 104.81 (12) | S2A—C3A—H3AE | 109.4 |
O9—C10—C11 | 112.68 (13) | S2Ai—C3A—H3AE | 63.3 |
O9—C10—N13 | 116.31 (13) | H3AA—C3A—H3AE | 63.3 |
C11—C10—N13 | 131.01 (14) | H3AB—C3A—H3AE | 86.5 |
C10—C11—C12 | 105.17 (13) | H3AC—C3A—H3AE | 164.2 |
C10—C11—H11 | 127.4 | H3AD—C3A—H3AE | 109.7 |
C12—C11—H11 | 127.4 | S2A—C3A—H3AF | 109.4 |
C8—C12—C11 | 106.84 (14) | S2Ai—C3A—H3AF | 119.4 |
C8—C12—H12 | 126.6 | H3AA—C3A—H3AF | 119.5 |
C11—C12—H12 | 126.6 | H3AC—C3A—H3AF | 86.3 |
O14—N13—O15 | 124.63 (14) | H3AD—C3A—H3AF | 109.4 |
O14—N13—C10 | 119.28 (13) | H3AE—C3A—H3AF | 109.6 |
O15—N13—C10 | 116.09 (14) | | |
| | | |
C5—N1—C2—O21 | −177.59 (17) | C12—C8—O9—C10 | −0.56 (17) |
C5—N1—C2—N3 | 1.74 (18) | C7—C8—O9—C10 | 179.28 (13) |
O21—C2—N3—N6 | 1.0 (3) | C8—O9—C10—C11 | 0.27 (17) |
N1—C2—N3—N6 | −178.34 (13) | C8—O9—C10—N13 | −179.27 (13) |
O21—C2—N3—C4 | 177.32 (17) | O9—C10—C11—C12 | 0.10 (19) |
N1—C2—N3—C4 | −2.00 (18) | N13—C10—C11—C12 | 179.55 (16) |
N6—N3—C4—C5 | 177.42 (14) | O9—C8—C12—C11 | 0.63 (19) |
C2—N3—C4—C5 | 1.48 (17) | C7—C8—C12—C11 | −179.16 (17) |
C2—N1—C5—O51 | 178.33 (17) | C10—C11—C12—C8 | −0.44 (19) |
C2—N1—C5—C4 | −0.83 (18) | O9—C10—N13—O14 | −2.9 (2) |
N3—C4—C5—O51 | −179.55 (17) | C11—C10—N13—O14 | 177.64 (17) |
N3—C4—C5—N1 | −0.38 (17) | O9—C10—N13—O15 | 176.39 (13) |
C2—N3—N6—C7 | 176.90 (14) | C11—C10—N13—O15 | −3.0 (3) |
C4—N3—N6—C7 | 1.2 (2) | S2Ai—O1A—S2A—C3A | 54.48 (8) |
N3—N6—C7—C8 | −179.37 (13) | S2Ai—O1A—S2A—C3Ai | −53.80 (8) |
N6—C7—C8—C12 | −5.1 (3) | O1A—S2A—C3A—S2Ai | −52.55 (5) |
N6—C7—C8—O9 | 175.15 (13) | C3Ai—S2A—C3A—S2Ai | 57.02 (9) |
Symmetry code: (i) −x+1, y, −z+1/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1A | 0.85 (3) | 1.94 (3) | 2.7841 (16) | 171 (2) |
C7—H7···O51ii | 0.95 | 2.49 | 3.235 (2) | 136 |
Symmetry code: (ii) x, −y+1, z+1/2. |
(Ic) (
E)-1-[(5-nitro-2-furyl)methylideneamino]imidazolidine-2,4-dion
dimethylacetamide monosolvate
top
Crystal data top
C8H6N4O5·C4H9NO | Z = 2 |
Mr = 325.29 | F(000) = 340 |
Triclinic, P1 | Dx = 1.464 Mg m−3 |
a = 6.6544 (5) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 7.9842 (6) Å | Cell parameters from 17770 reflections |
c = 14.3515 (11) Å | θ = 3.2–26.1° |
α = 100.021 (6)° | µ = 0.12 mm−1 |
β = 93.566 (6)° | T = 173 K |
γ = 99.274 (6)° | Block, colourless |
V = 737.85 (10) Å3 | 0.30 × 0.30 × 0.20 mm |
Data collection top
Stoe IPDS II two-circle diffractometer | 2111 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.062 |
Graphite monochromator | θmax = 25.6°, θmin = 3.2° |
ω scans | h = −8→8 |
24053 measured reflections | k = −9→9 |
2770 independent reflections | l = −17→17 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.038 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.100 | w = 1/[σ2(Fo2) + (0.0657P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.97 | (Δ/σ)max < 0.001 |
2770 reflections | Δρmax = 0.28 e Å−3 |
232 parameters | Δρmin = −0.16 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.028 (4) |
Crystal data top
C8H6N4O5·C4H9NO | γ = 99.274 (6)° |
Mr = 325.29 | V = 737.85 (10) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.6544 (5) Å | Mo Kα radiation |
b = 7.9842 (6) Å | µ = 0.12 mm−1 |
c = 14.3515 (11) Å | T = 173 K |
α = 100.021 (6)° | 0.30 × 0.30 × 0.20 mm |
β = 93.566 (6)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 2111 reflections with I > 2σ(I) |
24053 measured reflections | Rint = 0.062 |
2770 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.100 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.97 | Δρmax = 0.28 e Å−3 |
2770 reflections | Δρmin = −0.16 e Å−3 |
232 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
N1 | 0.3323 (2) | 0.62290 (18) | 0.73950 (10) | 0.0296 (3) | |
H1 | 0.230 (4) | 0.649 (3) | 0.7792 (18) | 0.065 (7)* | |
C2 | 0.2983 (2) | 0.4852 (2) | 0.66326 (11) | 0.0281 (4) | |
O21 | 0.13623 (17) | 0.39642 (17) | 0.63138 (9) | 0.0382 (3) | |
N3 | 0.4876 (2) | 0.47248 (18) | 0.63120 (9) | 0.0282 (3) | |
C4 | 0.6510 (2) | 0.6003 (2) | 0.68690 (11) | 0.0308 (4) | |
H4A | 0.7243 | 0.6746 | 0.6469 | 0.037* | |
H4B | 0.7500 | 0.5452 | 0.7199 | 0.037* | |
C5 | 0.5329 (3) | 0.7013 (2) | 0.75657 (11) | 0.0302 (4) | |
O51 | 0.60202 (19) | 0.82787 (16) | 0.81607 (9) | 0.0403 (3) | |
N6 | 0.5037 (2) | 0.34449 (18) | 0.55711 (9) | 0.0276 (3) | |
C7 | 0.6869 (2) | 0.3273 (2) | 0.53814 (11) | 0.0282 (4) | |
H7 | 0.8010 | 0.4026 | 0.5743 | 0.034* | |
C8 | 0.7176 (2) | 0.1933 (2) | 0.46184 (11) | 0.0285 (4) | |
O9 | 0.54888 (17) | 0.09676 (15) | 0.40652 (7) | 0.0298 (3) | |
C10 | 0.6247 (3) | −0.0162 (2) | 0.34225 (11) | 0.0302 (4) | |
C11 | 0.8301 (3) | 0.0020 (2) | 0.35424 (12) | 0.0336 (4) | |
H11 | 0.9153 | −0.0632 | 0.3178 | 0.040* | |
C12 | 0.8918 (3) | 0.1390 (2) | 0.43258 (12) | 0.0314 (4) | |
H12 | 1.0278 | 0.1845 | 0.4596 | 0.038* | |
N13 | 0.4754 (2) | −0.1362 (2) | 0.27809 (10) | 0.0370 (4) | |
O14 | 0.2939 (2) | −0.13929 (19) | 0.29028 (9) | 0.0469 (4) | |
O15 | 0.5403 (2) | −0.23311 (18) | 0.21488 (9) | 0.0504 (4) | |
O1A | 0.0279 (2) | 0.65609 (19) | 0.85940 (9) | 0.0452 (4) | |
C3A | 0.2632 (3) | 0.8710 (3) | 0.98807 (15) | 0.0448 (5) | |
H3AA | 0.2266 | 0.9795 | 1.0198 | 0.067* | 0.646 (7) |
H3AB | 0.3498 | 0.8937 | 0.9373 | 0.067* | 0.646 (7) |
H3AC | 0.3378 | 0.8212 | 1.0344 | 0.067* | 0.646 (7) |
H3AD | 0.3295 | 0.9546 | 1.0441 | 0.067* | 0.354 (7) |
H3AE | 0.3462 | 0.7810 | 0.9723 | 0.067* | 0.354 (7) |
H3AF | 0.2497 | 0.9302 | 0.9342 | 0.067* | 0.354 (7) |
C5A | −0.0287 (3) | 0.8084 (3) | 1.10608 (13) | 0.0534 (6) | |
H5AA | −0.1588 | 0.8341 | 1.1281 | 0.080* | 0.646 (7) |
H5AB | 0.0687 | 0.9164 | 1.1112 | 0.080* | 0.646 (7) |
H5AC | 0.0265 | 0.7345 | 1.1454 | 0.080* | 0.646 (7) |
H5AD | 0.0634 | 0.8976 | 1.1518 | 0.080* | 0.354 (7) |
H5AE | −0.1643 | 0.8408 | 1.1008 | 0.080* | 0.354 (7) |
H5AF | −0.0397 | 0.6978 | 1.1279 | 0.080* | 0.354 (7) |
C6A | −0.2580 (3) | 0.5867 (3) | 0.96691 (16) | 0.0438 (5) | |
H6AA | −0.3728 | 0.6480 | 0.9603 | 0.066* | 0.646 (7) |
H6AB | −0.2875 | 0.5068 | 1.0110 | 0.066* | 0.646 (7) |
H6AC | −0.2380 | 0.5216 | 0.9047 | 0.066* | 0.646 (7) |
H6AD | −0.2665 | 0.6336 | 1.0341 | 0.066* | 0.354 (7) |
H6AE | −0.3724 | 0.6118 | 0.9285 | 0.066* | 0.354 (7) |
H6AF | −0.2644 | 0.4614 | 0.9583 | 0.066* | 0.354 (7) |
C2A | 0.0691 (6) | 0.7444 (5) | 0.9457 (3) | 0.0391 (11) | 0.646 (7) |
N4A | −0.0626 (6) | 0.7180 (5) | 1.0058 (2) | 0.0423 (11) | 0.646 (7) |
N4B | 0.0568 (8) | 0.7914 (6) | 1.0092 (3) | 0.0216 (14) | 0.354 (7) |
C2B | −0.0598 (8) | 0.6682 (6) | 0.9361 (3) | 0.0151 (15) | 0.354 (7) |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0264 (7) | 0.0314 (8) | 0.0296 (7) | 0.0049 (6) | 0.0033 (6) | 0.0015 (6) |
C2 | 0.0256 (9) | 0.0318 (9) | 0.0272 (8) | 0.0069 (7) | 0.0006 (6) | 0.0054 (7) |
O21 | 0.0225 (6) | 0.0410 (7) | 0.0452 (7) | 0.0034 (6) | −0.0013 (5) | −0.0044 (6) |
N3 | 0.0226 (7) | 0.0351 (8) | 0.0242 (6) | 0.0026 (6) | 0.0013 (5) | 0.0011 (6) |
C4 | 0.0255 (8) | 0.0351 (10) | 0.0289 (8) | −0.0008 (7) | −0.0004 (6) | 0.0048 (7) |
C5 | 0.0320 (9) | 0.0305 (9) | 0.0274 (8) | 0.0039 (7) | −0.0009 (7) | 0.0064 (7) |
O51 | 0.0417 (7) | 0.0357 (7) | 0.0370 (7) | 0.0008 (6) | −0.0033 (5) | −0.0032 (6) |
N6 | 0.0288 (7) | 0.0316 (8) | 0.0231 (6) | 0.0071 (6) | 0.0021 (5) | 0.0054 (6) |
C7 | 0.0247 (8) | 0.0355 (9) | 0.0245 (8) | 0.0040 (7) | 0.0005 (6) | 0.0075 (7) |
C8 | 0.0269 (8) | 0.0333 (9) | 0.0259 (8) | 0.0042 (7) | 0.0007 (6) | 0.0087 (7) |
O9 | 0.0271 (6) | 0.0360 (7) | 0.0263 (6) | 0.0058 (5) | 0.0020 (4) | 0.0057 (5) |
C10 | 0.0341 (9) | 0.0296 (9) | 0.0275 (8) | 0.0056 (7) | 0.0033 (7) | 0.0069 (7) |
C11 | 0.0355 (10) | 0.0341 (10) | 0.0327 (9) | 0.0096 (8) | 0.0077 (7) | 0.0059 (7) |
C12 | 0.0270 (9) | 0.0354 (10) | 0.0327 (9) | 0.0059 (7) | 0.0047 (7) | 0.0079 (7) |
N13 | 0.0438 (10) | 0.0353 (9) | 0.0311 (8) | 0.0014 (7) | −0.0010 (6) | 0.0102 (7) |
O14 | 0.0344 (8) | 0.0591 (9) | 0.0433 (7) | −0.0036 (6) | −0.0051 (6) | 0.0128 (6) |
O15 | 0.0642 (10) | 0.0405 (8) | 0.0402 (7) | 0.0064 (7) | 0.0015 (7) | −0.0057 (6) |
O1A | 0.0425 (8) | 0.0622 (9) | 0.0309 (7) | 0.0205 (7) | 0.0056 (6) | −0.0022 (6) |
C3A | 0.0293 (10) | 0.0386 (11) | 0.0586 (12) | −0.0022 (8) | −0.0002 (8) | −0.0039 (9) |
C5A | 0.0553 (13) | 0.0746 (16) | 0.0290 (9) | 0.0188 (12) | 0.0049 (9) | −0.0010 (10) |
C6A | 0.0249 (9) | 0.0415 (11) | 0.0668 (13) | 0.0009 (8) | 0.0063 (8) | 0.0188 (10) |
C2A | 0.039 (3) | 0.0357 (19) | 0.046 (2) | 0.0162 (19) | 0.0037 (15) | 0.0059 (16) |
N4A | 0.042 (2) | 0.0491 (19) | 0.037 (2) | 0.0142 (18) | 0.0043 (13) | 0.0055 (14) |
N4B | 0.008 (3) | 0.029 (3) | 0.020 (3) | −0.007 (2) | 0.0021 (16) | −0.0089 (19) |
C2B | 0.007 (3) | 0.017 (2) | 0.016 (3) | −0.003 (2) | 0.0009 (16) | −0.0031 (19) |
Geometric parameters (Å, º) top
N1—C5 | 1.368 (2) | C3A—N4B | 1.490 (6) |
N1—C2 | 1.388 (2) | C3A—C2A | 1.525 (5) |
N1—H1 | 0.94 (3) | C3A—H3AA | 0.9800 |
C2—O21 | 1.206 (2) | C3A—H3AB | 0.9800 |
C2—N3 | 1.380 (2) | C3A—H3AC | 0.9800 |
N3—N6 | 1.3629 (19) | C3A—H3AD | 0.9801 |
N3—C4 | 1.454 (2) | C3A—H3AE | 0.9800 |
C4—C5 | 1.513 (2) | C3A—H3AF | 0.9800 |
C4—H4A | 0.9900 | C5A—N4A | 1.479 (4) |
C4—H4B | 0.9900 | C5A—N4B | 1.527 (5) |
C5—O51 | 1.209 (2) | C5A—H5AA | 0.9800 |
N6—C7 | 1.289 (2) | C5A—H5AB | 0.9800 |
C7—C8 | 1.441 (2) | C5A—H5AC | 0.9800 |
C7—H7 | 0.9500 | C5A—H5AD | 0.9800 |
C8—C12 | 1.366 (2) | C5A—H5AE | 0.9800 |
C8—O9 | 1.372 (2) | C5A—H5AF | 0.9800 |
O9—C10 | 1.354 (2) | C6A—C2B | 1.501 (6) |
C10—C11 | 1.348 (2) | C6A—N4A | 1.539 (5) |
C10—N13 | 1.423 (2) | C6A—H6AA | 0.9800 |
C11—C12 | 1.414 (2) | C6A—H6AB | 0.9800 |
C11—H11 | 0.9500 | C6A—H6AC | 0.9800 |
C12—H12 | 0.9500 | C6A—H6AD | 0.9800 |
N13—O14 | 1.228 (2) | C6A—H6AE | 0.9800 |
N13—O15 | 1.233 (2) | C6A—H6AF | 0.9800 |
O1A—C2B | 1.274 (5) | C2A—N4A | 1.286 (6) |
O1A—C2A | 1.303 (5) | N4B—C2B | 1.402 (8) |
| | | |
C5—N1—C2 | 112.89 (14) | H3AE—C3A—H3AF | 109.5 |
C5—N1—H1 | 124.2 (16) | N4A—C5A—H5AA | 109.5 |
C2—N1—H1 | 122.5 (16) | N4B—C5A—H5AA | 133.3 |
O21—C2—N3 | 127.34 (15) | N4A—C5A—H5AB | 109.5 |
O21—C2—N1 | 126.86 (15) | N4B—C5A—H5AB | 76.6 |
N3—C2—N1 | 105.80 (14) | H5AA—C5A—H5AB | 109.5 |
N6—N3—C2 | 119.38 (14) | N4A—C5A—H5AC | 109.5 |
N6—N3—C4 | 127.91 (13) | N4B—C5A—H5AC | 111.6 |
C2—N3—C4 | 112.66 (13) | H5AA—C5A—H5AC | 109.5 |
N3—C4—C5 | 101.48 (13) | H5AB—C5A—H5AC | 109.5 |
N3—C4—H4A | 111.5 | N4A—C5A—H5AD | 144.1 |
C5—C4—H4A | 111.5 | N4B—C5A—H5AD | 109.3 |
N3—C4—H4B | 111.5 | H5AA—C5A—H5AD | 98.2 |
C5—C4—H4B | 111.5 | H5AC—C5A—H5AD | 80.9 |
H4A—C4—H4B | 109.3 | N4A—C5A—H5AE | 89.9 |
O51—C5—N1 | 126.24 (16) | N4B—C5A—H5AE | 109.6 |
O51—C5—C4 | 126.69 (16) | H5AB—C5A—H5AE | 105.3 |
N1—C5—C4 | 107.07 (14) | H5AC—C5A—H5AE | 130.8 |
C7—N6—N3 | 116.08 (14) | H5AD—C5A—H5AE | 109.5 |
N6—C7—C8 | 119.65 (15) | N4A—C5A—H5AF | 90.8 |
N6—C7—H7 | 120.2 | N4B—C5A—H5AF | 109.6 |
C8—C7—H7 | 120.2 | H5AA—C5A—H5AF | 95.1 |
C12—C8—O9 | 110.49 (14) | H5AB—C5A—H5AF | 139.6 |
C12—C8—C7 | 131.27 (16) | H5AD—C5A—H5AF | 109.5 |
O9—C8—C7 | 118.23 (14) | H5AE—C5A—H5AF | 109.5 |
C10—O9—C8 | 104.75 (12) | C2B—C6A—H6AA | 115.6 |
C11—C10—O9 | 112.89 (15) | N4A—C6A—H6AA | 109.5 |
C11—C10—N13 | 131.86 (16) | C2B—C6A—H6AB | 131.6 |
O9—C10—N13 | 115.17 (14) | N4A—C6A—H6AB | 109.5 |
C10—C11—C12 | 105.25 (14) | H6AA—C6A—H6AB | 109.5 |
C10—C11—H11 | 127.4 | C2B—C6A—H6AC | 71.5 |
C12—C11—H11 | 127.4 | N4A—C6A—H6AC | 109.5 |
C8—C12—C11 | 106.62 (15) | H6AA—C6A—H6AC | 109.5 |
C8—C12—H12 | 126.7 | H6AB—C6A—H6AC | 109.5 |
C11—C12—H12 | 126.7 | C2B—C6A—H6AD | 109.6 |
O14—N13—O15 | 124.76 (16) | N4A—C6A—H6AD | 70.7 |
O14—N13—C10 | 118.68 (15) | H6AA—C6A—H6AD | 80.7 |
O15—N13—C10 | 116.54 (15) | H6AB—C6A—H6AD | 60.9 |
N4B—C3A—H3AA | 84.6 | H6AC—C6A—H6AD | 168.5 |
C2A—C3A—H3AA | 109.5 | C2B—C6A—H6AE | 109.5 |
N4B—C3A—H3AB | 144.7 | N4A—C6A—H6AE | 124.3 |
C2A—C3A—H3AB | 109.5 | H6AB—C6A—H6AE | 118.5 |
H3AA—C3A—H3AB | 109.5 | H6AC—C6A—H6AE | 80.2 |
N4B—C3A—H3AC | 94.8 | H6AD—C6A—H6AE | 109.5 |
C2A—C3A—H3AC | 109.5 | C2B—C6A—H6AF | 109.4 |
H3AA—C3A—H3AC | 109.5 | N4A—C6A—H6AF | 123.2 |
H3AB—C3A—H3AC | 109.5 | H6AA—C6A—H6AF | 127.0 |
N4B—C3A—H3AD | 109.2 | H6AB—C6A—H6AF | 49.1 |
C2A—C3A—H3AD | 145.3 | H6AC—C6A—H6AF | 60.4 |
H3AA—C3A—H3AD | 49.3 | H6AD—C6A—H6AF | 109.5 |
H3AB—C3A—H3AD | 104.1 | H6AE—C6A—H6AF | 109.5 |
H3AC—C3A—H3AD | 65.5 | N4A—C2A—O1A | 117.8 (5) |
N4B—C3A—H3AE | 109.6 | N4A—C2A—C3A | 114.0 (4) |
C2A—C3A—H3AE | 90.8 | O1A—C2A—C3A | 128.1 (3) |
H3AA—C3A—H3AE | 158.4 | C2A—N4A—C5A | 122.1 (5) |
H3AB—C3A—H3AE | 68.5 | C2A—N4A—C6A | 115.9 (4) |
H3AC—C3A—H3AE | 54.7 | C5A—N4A—C6A | 122.0 (3) |
H3AD—C3A—H3AE | 109.5 | C2B—N4B—C3A | 116.6 (5) |
N4B—C3A—H3AF | 109.7 | C2B—N4B—C5A | 115.8 (5) |
C2A—C3A—H3AF | 88.4 | C3A—N4B—C5A | 126.9 (4) |
H3AA—C3A—H3AF | 79.2 | O1A—C2B—N4B | 111.6 (5) |
H3AB—C3A—H3AF | 46.3 | O1A—C2B—C6A | 136.1 (4) |
H3AC—C3A—H3AF | 154.9 | N4B—C2B—C6A | 112.3 (4) |
H3AD—C3A—H3AF | 109.5 | | |
| | | |
C5—N1—C2—O21 | −178.06 (16) | O9—C10—N13—O14 | −6.2 (2) |
C5—N1—C2—N3 | 1.33 (18) | C11—C10—N13—O15 | −8.1 (3) |
O21—C2—N3—N6 | −2.1 (3) | O9—C10—N13—O15 | 175.38 (14) |
N1—C2—N3—N6 | 178.48 (13) | C2B—O1A—C2A—N4A | 0.8 (3) |
O21—C2—N3—C4 | −179.67 (16) | C2B—O1A—C2A—C3A | 176.8 (4) |
N1—C2—N3—C4 | 0.94 (18) | N4B—C3A—C2A—N4A | −5.0 (3) |
N6—N3—C4—C5 | −179.80 (14) | N4B—C3A—C2A—O1A | 178.9 (5) |
C2—N3—C4—C5 | −2.53 (17) | O1A—C2A—N4A—C5A | 178.5 (2) |
C2—N1—C5—O51 | 176.88 (16) | C3A—C2A—N4A—C5A | 2.0 (4) |
C2—N1—C5—C4 | −2.93 (18) | O1A—C2A—N4A—C6A | −1.6 (3) |
N3—C4—C5—O51 | −176.64 (16) | C3A—C2A—N4A—C6A | −178.12 (19) |
N3—C4—C5—N1 | 3.17 (16) | N4B—C5A—N4A—C2A | 3.5 (3) |
C2—N3—N6—C7 | −172.06 (14) | N4B—C5A—N4A—C6A | −176.4 (4) |
C4—N3—N6—C7 | 5.1 (2) | C2B—C6A—N4A—C2A | 0.5 (3) |
N3—N6—C7—C8 | 179.04 (14) | C2B—C6A—N4A—C5A | −179.6 (4) |
N6—C7—C8—C12 | −173.89 (17) | C2A—C3A—N4B—C2B | 2.5 (3) |
N6—C7—C8—O9 | 5.3 (2) | C2A—C3A—N4B—C5A | 172.3 (5) |
C12—C8—O9—C10 | −0.68 (17) | N4A—C5A—N4B—C2B | −0.8 (3) |
C7—C8—O9—C10 | 179.98 (14) | N4A—C5A—N4B—C3A | −170.7 (6) |
C8—O9—C10—C11 | 0.64 (18) | C2A—O1A—C2B—N4B | 1.4 (3) |
C8—O9—C10—N13 | 177.83 (13) | C2A—O1A—C2B—C6A | 179.7 (6) |
O9—C10—C11—C12 | −0.4 (2) | C3A—N4B—C2B—O1A | −5.5 (5) |
N13—C10—C11—C12 | −176.93 (17) | C5A—N4B—C2B—O1A | −176.4 (3) |
O9—C8—C12—C11 | 0.49 (19) | C3A—N4B—C2B—C6A | 175.8 (3) |
C7—C8—C12—C11 | 179.71 (17) | C5A—N4B—C2B—C6A | 4.8 (4) |
C10—C11—C12—C8 | −0.09 (19) | N4A—C6A—C2B—O1A | 179.2 (6) |
C11—C10—N13—O14 | 170.30 (18) | N4A—C6A—C2B—N4B | −2.5 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1A | 0.94 (3) | 1.82 (3) | 2.7533 (19) | 169 (2) |
C7—H7···O21i | 0.95 | 2.34 | 3.123 (2) | 139 |
Symmetry code: (i) x+1, y, z. |
(Id) (
E)-1-[(5-nitro-2-furyl)methylideneamino]imidazolidine-2,4-dion
dimethylacetamide monosolvate
top
Crystal data top
C8H6N4O5·C4H9NO | F(000) = 680 |
Mr = 325.29 | Dx = 1.474 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 16.2038 (16) Å | Cell parameters from 5010 reflections |
b = 7.4215 (5) Å | θ = 3.3–25.7° |
c = 13.1195 (12) Å | µ = 0.12 mm−1 |
β = 111.681 (7)° | T = 173 K |
V = 1466.1 (2) Å3 | Block, yellow |
Z = 4 | 0.30 × 0.20 × 0.20 mm |
Data collection top
Stoe IPDS II two-circle diffractometer | 1584 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.147 |
Graphite monochromator | θmax = 25.6°, θmin = 3.2° |
ω scans | h = −19→19 |
17332 measured reflections | k = −9→9 |
2743 independent reflections | l = −14→15 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.106 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.85 | w = 1/[σ2(Fo2) + (0.0409P)2] where P = (Fo2 + 2Fc2)/3 |
2743 reflections | (Δ/σ)max < 0.001 |
231 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
Crystal data top
C8H6N4O5·C4H9NO | V = 1466.1 (2) Å3 |
Mr = 325.29 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 16.2038 (16) Å | µ = 0.12 mm−1 |
b = 7.4215 (5) Å | T = 173 K |
c = 13.1195 (12) Å | 0.30 × 0.20 × 0.20 mm |
β = 111.681 (7)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1584 reflections with I > 2σ(I) |
17332 measured reflections | Rint = 0.147 |
2743 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.106 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.85 | Δρmax = 0.20 e Å−3 |
2743 reflections | Δρmin = −0.26 e Å−3 |
231 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
N1 | 0.44048 (14) | 0.8147 (3) | 0.47492 (17) | 0.0265 (5) | |
H1 | 0.4047 (18) | 0.864 (4) | 0.501 (2) | 0.035 (8)* | |
C2 | 0.51946 (15) | 0.7335 (3) | 0.5398 (2) | 0.0262 (6) | |
O21 | 0.54928 (12) | 0.7235 (3) | 0.63849 (14) | 0.0374 (5) | |
N3 | 0.55619 (13) | 0.6646 (3) | 0.46797 (16) | 0.0255 (5) | |
C4 | 0.50279 (16) | 0.7062 (4) | 0.35406 (19) | 0.0292 (6) | |
H4A | 0.4834 | 0.5953 | 0.3097 | 0.035* | |
H4B | 0.5356 | 0.7840 | 0.3207 | 0.035* | |
C5 | 0.42524 (16) | 0.8044 (3) | 0.3653 (2) | 0.0287 (6) | |
O51 | 0.36091 (12) | 0.8639 (3) | 0.29181 (15) | 0.0413 (5) | |
N6 | 0.63847 (13) | 0.5897 (3) | 0.50853 (16) | 0.0260 (5) | |
C7 | 0.67150 (15) | 0.5385 (3) | 0.4376 (2) | 0.0273 (6) | |
H7 | 0.6379 | 0.5509 | 0.3614 | 0.033* | |
C8 | 0.75898 (16) | 0.4629 (3) | 0.4740 (2) | 0.0280 (6) | |
O9 | 0.80569 (11) | 0.4382 (2) | 0.58451 (14) | 0.0317 (4) | |
C10 | 0.88552 (16) | 0.3719 (4) | 0.5922 (2) | 0.0333 (6) | |
C11 | 0.89241 (17) | 0.3522 (4) | 0.4937 (2) | 0.0366 (7) | |
H11 | 0.9422 | 0.3088 | 0.4792 | 0.044* | |
C12 | 0.81008 (17) | 0.4095 (4) | 0.4164 (2) | 0.0341 (6) | |
H12 | 0.7932 | 0.4109 | 0.3390 | 0.041* | |
N13 | 0.94479 (16) | 0.3229 (4) | 0.6983 (2) | 0.0453 (6) | |
O14 | 0.92013 (14) | 0.3342 (3) | 0.77664 (17) | 0.0559 (6) | |
O15 | 1.01833 (14) | 0.2656 (4) | 0.70567 (19) | 0.0713 (8) | |
O1A | 0.34129 (11) | 0.9862 (3) | 0.57493 (17) | 0.0418 (5) | |
C3A | 0.21805 (19) | 1.0507 (4) | 0.3933 (2) | 0.0410 (7) | |
H3A1 | 0.1565 | 1.0918 | 0.3724 | 0.062* | 0.532 (12) |
H3A2 | 0.2189 | 0.9327 | 0.3602 | 0.062* | 0.532 (12) |
H3A3 | 0.2514 | 1.1376 | 0.3673 | 0.062* | 0.532 (12) |
H3A4 | 0.1996 | 1.1625 | 0.3512 | 0.062* | 0.468 (12) |
H3A5 | 0.1841 | 0.9494 | 0.3499 | 0.062* | 0.468 (12) |
H3A6 | 0.2816 | 1.0308 | 0.4105 | 0.062* | 0.468 (12) |
C6A | 0.25463 (19) | 1.0653 (4) | 0.6961 (2) | 0.0421 (7) | |
H6A1 | 0.2124 | 1.0995 | 0.7303 | 0.063* | 0.532 (12) |
H6A2 | 0.3059 | 1.1466 | 0.7214 | 0.063* | 0.532 (12) |
H6A3 | 0.2746 | 0.9412 | 0.7166 | 0.063* | 0.532 (12) |
H6A4 | 0.3115 | 1.0672 | 0.7585 | 0.063* | 0.468 (12) |
H6A5 | 0.2177 | 0.9671 | 0.7057 | 0.063* | 0.468 (12) |
H6A6 | 0.2240 | 1.1804 | 0.6922 | 0.063* | 0.468 (12) |
C5A | 0.11593 (18) | 1.1268 (5) | 0.5101 (3) | 0.0602 (10) | |
H5A1 | 0.0858 | 1.1556 | 0.5605 | 0.090* | 0.532 (12) |
H5A2 | 0.0860 | 1.0248 | 0.4636 | 0.090* | 0.532 (12) |
H5A3 | 0.1140 | 1.2317 | 0.4639 | 0.090* | 0.532 (12) |
H5A4 | 0.0692 | 1.1437 | 0.4376 | 0.090* | 0.468 (12) |
H5A5 | 0.1268 | 1.2409 | 0.5505 | 0.090* | 0.468 (12) |
H5A6 | 0.0970 | 1.0353 | 0.5508 | 0.090* | 0.468 (12) |
N4A | 0.2105 (4) | 1.0782 (6) | 0.5745 (6) | 0.0275 (18) | 0.532 (12) |
C2A | 0.2596 (6) | 1.0357 (7) | 0.5153 (7) | 0.0293 (19) | 0.532 (12) |
N4B | 0.2018 (5) | 1.0649 (7) | 0.4979 (7) | 0.034 (2) | 0.468 (12) |
C2B | 0.2713 (5) | 1.0359 (8) | 0.5899 (8) | 0.030 (2) | 0.468 (12) |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0268 (11) | 0.0306 (13) | 0.0243 (11) | 0.0023 (9) | 0.0120 (9) | −0.0002 (9) |
C2 | 0.0239 (12) | 0.0277 (14) | 0.0279 (15) | −0.0018 (11) | 0.0107 (11) | −0.0001 (11) |
O21 | 0.0396 (10) | 0.0545 (13) | 0.0184 (10) | 0.0106 (9) | 0.0111 (8) | 0.0023 (8) |
N3 | 0.0237 (10) | 0.0360 (13) | 0.0186 (10) | 0.0003 (9) | 0.0101 (8) | 0.0004 (9) |
C4 | 0.0295 (13) | 0.0375 (16) | 0.0196 (13) | −0.0018 (11) | 0.0077 (10) | 0.0010 (11) |
C5 | 0.0291 (13) | 0.0305 (15) | 0.0256 (14) | −0.0058 (11) | 0.0091 (11) | 0.0010 (11) |
O51 | 0.0356 (10) | 0.0533 (13) | 0.0307 (10) | 0.0089 (9) | 0.0072 (9) | 0.0093 (9) |
N6 | 0.0255 (10) | 0.0282 (12) | 0.0260 (11) | −0.0041 (9) | 0.0113 (9) | −0.0008 (9) |
C7 | 0.0257 (13) | 0.0320 (15) | 0.0244 (13) | −0.0028 (11) | 0.0094 (11) | −0.0038 (11) |
C8 | 0.0301 (13) | 0.0297 (14) | 0.0229 (13) | −0.0045 (11) | 0.0084 (11) | −0.0058 (11) |
O9 | 0.0298 (9) | 0.0372 (11) | 0.0269 (10) | 0.0017 (8) | 0.0091 (8) | −0.0020 (8) |
C10 | 0.0261 (13) | 0.0370 (16) | 0.0323 (15) | 0.0025 (12) | 0.0055 (11) | −0.0051 (12) |
C11 | 0.0292 (14) | 0.0411 (17) | 0.0400 (16) | 0.0030 (12) | 0.0133 (12) | −0.0073 (13) |
C12 | 0.0332 (14) | 0.0410 (17) | 0.0306 (14) | −0.0010 (12) | 0.0148 (12) | −0.0076 (12) |
N13 | 0.0363 (13) | 0.0508 (17) | 0.0398 (15) | 0.0101 (12) | 0.0035 (11) | −0.0033 (12) |
O14 | 0.0532 (13) | 0.0788 (17) | 0.0322 (12) | 0.0126 (12) | 0.0118 (10) | 0.0052 (11) |
O15 | 0.0419 (13) | 0.111 (2) | 0.0498 (14) | 0.0319 (14) | 0.0039 (10) | −0.0039 (14) |
O1A | 0.0283 (10) | 0.0415 (12) | 0.0583 (13) | 0.0043 (9) | 0.0191 (10) | −0.0049 (10) |
C3A | 0.0450 (16) | 0.0526 (19) | 0.0250 (14) | −0.0009 (14) | 0.0122 (13) | −0.0026 (13) |
C6A | 0.0403 (16) | 0.059 (2) | 0.0283 (15) | 0.0010 (14) | 0.0144 (13) | −0.0047 (13) |
C5A | 0.0235 (14) | 0.053 (2) | 0.101 (3) | 0.0102 (14) | 0.0183 (16) | 0.010 (2) |
N4A | 0.023 (3) | 0.033 (3) | 0.026 (4) | 0.000 (2) | 0.010 (2) | 0.0008 (19) |
C2A | 0.034 (5) | 0.030 (3) | 0.026 (4) | −0.009 (3) | 0.014 (3) | −0.009 (2) |
N4B | 0.025 (4) | 0.039 (3) | 0.036 (5) | 0.000 (2) | 0.010 (3) | 0.000 (3) |
C2B | 0.027 (5) | 0.029 (3) | 0.035 (5) | −0.007 (3) | 0.013 (4) | −0.007 (3) |
Geometric parameters (Å, º) top
N1—C5 | 1.369 (3) | C3A—N4B | 1.493 (9) |
N1—C2 | 1.386 (3) | C3A—C2A | 1.493 (9) |
N1—H1 | 0.86 (3) | C3A—H3A1 | 0.9800 |
C2—O21 | 1.206 (3) | C3A—H3A2 | 0.9800 |
C2—N3 | 1.385 (3) | C3A—H3A3 | 0.9800 |
N3—N6 | 1.358 (3) | C3A—H3A4 | 0.9799 |
N3—C4 | 1.457 (3) | C3A—H3A5 | 0.9800 |
C4—C5 | 1.506 (4) | C3A—H3A6 | 0.9801 |
C4—H4A | 0.9900 | C6A—N4A | 1.492 (7) |
C4—H4B | 0.9900 | C6A—C2B | 1.529 (10) |
C5—O51 | 1.212 (3) | C6A—H6A1 | 0.9800 |
N6—C7 | 1.291 (3) | C6A—H6A2 | 0.9800 |
C7—C8 | 1.432 (3) | C6A—H6A3 | 0.9800 |
C7—H7 | 0.9500 | C6A—H6A4 | 0.9800 |
C8—C12 | 1.370 (4) | C6A—H6A5 | 0.9799 |
C8—O9 | 1.377 (3) | C6A—H6A6 | 0.9800 |
O9—C10 | 1.352 (3) | C5A—N4A | 1.495 (7) |
C10—C11 | 1.346 (4) | C5A—N4B | 1.529 (9) |
C10—N13 | 1.416 (3) | C5A—H5A1 | 0.9800 |
C11—C12 | 1.410 (4) | C5A—H5A2 | 0.9800 |
C11—H11 | 0.9500 | C5A—H5A3 | 0.9800 |
C12—H12 | 0.9500 | C5A—H5A4 | 0.9799 |
N13—O15 | 1.235 (3) | C5A—H5A5 | 0.9799 |
N13—O14 | 1.236 (3) | C5A—H5A6 | 0.9800 |
O1A—C2B | 1.276 (9) | N4A—C2A | 1.340 (13) |
O1A—C2A | 1.317 (9) | N4B—C2B | 1.329 (15) |
| | | |
C5—N1—C2 | 112.8 (2) | N4A—C6A—H6A2 | 109.5 |
C5—N1—H1 | 124.2 (18) | C2B—C6A—H6A2 | 89.0 |
C2—N1—H1 | 122.9 (18) | H6A1—C6A—H6A2 | 109.5 |
O21—C2—N3 | 127.3 (2) | N4A—C6A—H6A3 | 109.5 |
O21—C2—N1 | 126.8 (2) | C2B—C6A—H6A3 | 88.0 |
N3—C2—N1 | 105.9 (2) | H6A1—C6A—H6A3 | 109.5 |
N6—N3—C2 | 119.40 (19) | H6A2—C6A—H6A3 | 109.5 |
N6—N3—C4 | 127.9 (2) | N4A—C6A—H6A4 | 145.4 |
C2—N3—C4 | 112.2 (2) | C2B—C6A—H6A4 | 109.5 |
N3—C4—C5 | 101.73 (19) | H6A1—C6A—H6A4 | 102.3 |
N3—C4—H4A | 111.4 | H6A3—C6A—H6A4 | 70.8 |
C5—C4—H4A | 111.4 | N4A—C6A—H6A5 | 96.4 |
N3—C4—H4B | 111.4 | C2B—C6A—H6A5 | 109.4 |
C5—C4—H4B | 111.4 | H6A1—C6A—H6A5 | 64.6 |
H4A—C4—H4B | 109.3 | H6A2—C6A—H6A5 | 153.6 |
O51—C5—N1 | 125.7 (2) | H6A3—C6A—H6A5 | 54.6 |
O51—C5—C4 | 127.0 (2) | H6A4—C6A—H6A5 | 109.5 |
N1—C5—C4 | 107.3 (2) | N4A—C6A—H6A6 | 81.6 |
C7—N6—N3 | 116.5 (2) | C2B—C6A—H6A6 | 109.4 |
N6—C7—C8 | 119.8 (2) | H6A1—C6A—H6A6 | 51.1 |
N6—C7—H7 | 120.1 | H6A2—C6A—H6A6 | 80.3 |
C8—C7—H7 | 120.1 | H6A3—C6A—H6A6 | 160.5 |
C12—C8—O9 | 109.5 (2) | H6A4—C6A—H6A6 | 109.5 |
C12—C8—C7 | 130.9 (2) | H6A5—C6A—H6A6 | 109.5 |
O9—C8—C7 | 119.7 (2) | N4A—C5A—H5A1 | 109.5 |
C10—O9—C8 | 105.40 (19) | N4B—C5A—H5A1 | 146.7 |
C11—C10—O9 | 112.6 (2) | N4A—C5A—H5A2 | 109.5 |
C11—C10—N13 | 130.5 (2) | N4B—C5A—H5A2 | 87.9 |
O9—C10—N13 | 116.7 (2) | H5A1—C5A—H5A2 | 109.5 |
C10—C11—C12 | 105.4 (2) | N4A—C5A—H5A3 | 109.5 |
C10—C11—H11 | 127.3 | N4B—C5A—H5A3 | 89.8 |
C12—C11—H11 | 127.3 | H5A1—C5A—H5A3 | 109.5 |
C8—C12—C11 | 107.2 (2) | H5A2—C5A—H5A3 | 109.5 |
C8—C12—H12 | 126.4 | N4A—C5A—H5A4 | 147.3 |
C11—C12—H12 | 126.4 | N4B—C5A—H5A4 | 110.1 |
O15—N13—O14 | 123.9 (2) | H5A1—C5A—H5A4 | 103.2 |
O15—N13—C10 | 116.8 (3) | H5A2—C5A—H5A4 | 57.9 |
O14—N13—C10 | 119.3 (2) | H5A3—C5A—H5A4 | 57.4 |
N4B—C3A—H3A1 | 74.3 | N4A—C5A—H5A5 | 87.8 |
C2A—C3A—H3A1 | 109.5 | N4B—C5A—H5A5 | 109.1 |
N4B—C3A—H3A2 | 120.4 | H5A1—C5A—H5A5 | 58.7 |
C2A—C3A—H3A2 | 109.5 | H5A2—C5A—H5A5 | 162.2 |
H3A1—C3A—H3A2 | 109.5 | H5A3—C5A—H5A5 | 66.8 |
N4B—C3A—H3A3 | 125.5 | H5A4—C5A—H5A5 | 109.5 |
C2A—C3A—H3A3 | 109.5 | N4A—C5A—H5A6 | 89.2 |
H3A1—C3A—H3A3 | 109.5 | N4B—C5A—H5A6 | 109.2 |
H3A2—C3A—H3A3 | 109.5 | H5A1—C5A—H5A6 | 56.6 |
N4B—C3A—H3A4 | 109.7 | H5A2—C5A—H5A6 | 67.8 |
C2A—C3A—H3A4 | 126.2 | H5A3—C5A—H5A6 | 160.4 |
H3A1—C3A—H3A4 | 60.8 | H5A4—C5A—H5A6 | 109.5 |
H3A2—C3A—H3A4 | 123.9 | H5A5—C5A—H5A6 | 109.5 |
H3A3—C3A—H3A4 | 48.7 | C2A—N4A—C6A | 116.9 (7) |
N4B—C3A—H3A5 | 109.7 | C2A—N4A—C5A | 115.7 (8) |
C2A—C3A—H3A5 | 119.9 | C6A—N4A—C5A | 127.3 (5) |
H3A1—C3A—H3A5 | 77.4 | O1A—C2A—N4A | 113.8 (8) |
H3A3—C3A—H3A5 | 124.5 | O1A—C2A—C3A | 127.9 (6) |
H3A4—C3A—H3A5 | 109.5 | N4A—C2A—C3A | 118.3 (8) |
N4B—C3A—H3A6 | 109.0 | O1A—C2A—H3A6 | 90.7 |
C2A—C3A—H3A6 | 73.9 | N4A—C2A—H3A6 | 154.8 |
H3A1—C3A—H3A6 | 170.0 | C2B—N4B—C3A | 116.5 (9) |
H3A2—C3A—H3A6 | 77.3 | C2B—N4B—C5A | 116.8 (9) |
H3A3—C3A—H3A6 | 60.8 | C3A—N4B—C5A | 126.4 (6) |
H3A4—C3A—H3A6 | 109.5 | O1A—C2B—N4B | 114.2 (10) |
H3A5—C3A—H3A6 | 109.5 | O1A—C2B—C6A | 130.4 (7) |
N4A—C6A—H6A1 | 109.5 | N4B—C2B—C6A | 115.4 (8) |
C2B—C6A—H6A1 | 147.3 | | |
| | | |
C5—N1—C2—O21 | 179.7 (3) | O9—C10—N13—O15 | −178.7 (3) |
C5—N1—C2—N3 | −1.1 (3) | C11—C10—N13—O14 | −171.2 (3) |
O21—C2—N3—N6 | −6.4 (4) | O9—C10—N13—O14 | 3.4 (4) |
N1—C2—N3—N6 | 174.4 (2) | C2B—C6A—N4A—C2A | −1.1 (5) |
O21—C2—N3—C4 | −178.6 (3) | C2B—C6A—N4A—C5A | 176.4 (7) |
N1—C2—N3—C4 | 2.3 (3) | N4B—C5A—N4A—C2A | 2.0 (4) |
N6—N3—C4—C5 | −173.8 (2) | N4B—C5A—N4A—C6A | −175.5 (7) |
C2—N3—C4—C5 | −2.4 (3) | C2B—O1A—C2A—N4A | 0.7 (4) |
C2—N1—C5—O51 | 179.6 (3) | C2B—O1A—C2A—C3A | −180.0 (8) |
C2—N1—C5—C4 | −0.4 (3) | C6A—N4A—C2A—O1A | 0.6 (6) |
N3—C4—C5—O51 | −178.4 (3) | C5A—N4A—C2A—O1A | −177.2 (4) |
N3—C4—C5—N1 | 1.6 (3) | C6A—N4A—C2A—C3A | −178.8 (4) |
C2—N3—N6—C7 | −175.6 (2) | C5A—N4A—C2A—C3A | 3.4 (6) |
C4—N3—N6—C7 | −4.8 (3) | N4B—C3A—C2A—O1A | 176.0 (8) |
N3—N6—C7—C8 | 178.3 (2) | N4B—C3A—C2A—N4A | −4.8 (4) |
N6—C7—C8—C12 | −175.5 (3) | C2A—C3A—N4B—C2B | 0.8 (5) |
N6—C7—C8—O9 | 2.8 (4) | C2A—C3A—N4B—C5A | 174.5 (8) |
C12—C8—O9—C10 | 0.8 (3) | N4A—C5A—N4B—C2B | 1.6 (4) |
C7—C8—O9—C10 | −177.9 (2) | N4A—C5A—N4B—C3A | −172.2 (7) |
C8—O9—C10—C11 | −0.3 (3) | C2A—O1A—C2B—N4B | 2.9 (4) |
C8—O9—C10—N13 | −175.9 (2) | C2A—O1A—C2B—C6A | −177.8 (9) |
O9—C10—C11—C12 | −0.3 (3) | C3A—N4B—C2B—O1A | −5.0 (7) |
N13—C10—C11—C12 | 174.5 (3) | C5A—N4B—C2B—O1A | −179.4 (4) |
O9—C8—C12—C11 | −1.0 (3) | C3A—N4B—C2B—C6A | 175.5 (4) |
C7—C8—C12—C11 | 177.5 (3) | C5A—N4B—C2B—C6A | 1.2 (7) |
C10—C11—C12—C8 | 0.8 (3) | N4A—C6A—C2B—O1A | 178.2 (9) |
C11—C10—N13—O15 | 6.7 (5) | N4A—C6A—C2B—N4B | −2.5 (4) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1A | 0.86 (3) | 1.88 (3) | 2.736 (3) | 172 (3) |
C7—H7···O51i | 0.95 | 2.45 | 3.137 (3) | 129 |
Symmetry code: (i) −x+1, y−1/2, −z+1/2. |
(Ie) (
E)-1-[(5-nitro-2-furyl)methylideneamino]imidazolidine-2,4-dione
dimethylacetamide disolvat
top
Crystal data top
C8H6N4O5·2C4H9NO | F(000) = 872 |
Mr = 412.41 | Dx = 1.327 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 20.874 (2) Å | Cell parameters from 8474 reflections |
b = 11.5433 (9) Å | θ = 3.5–25.9° |
c = 8.7162 (9) Å | µ = 0.11 mm−1 |
β = 100.708 (9)° | T = 173 K |
V = 2063.6 (3) Å3 | Block, yellow |
Z = 4 | 0.60 × 0.60 × 0.20 mm |
Data collection top
Stoe IPDS II two-circle diffractometer | 2943 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.078 |
Graphite monochromator | θmax = 25.6°, θmin = 3.5° |
ω scans | h = −25→23 |
9751 measured reflections | k = −13→13 |
3844 independent reflections | l = −10→10 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.047 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.126 | w = 1/[σ2(Fo2) + (0.0809P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.97 | (Δ/σ)max < 0.001 |
3844 reflections | Δρmax = 0.26 e Å−3 |
285 parameters | Δρmin = −0.24 e Å−3 |
22 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.027 (3) |
Crystal data top
C8H6N4O5·2C4H9NO | V = 2063.6 (3) Å3 |
Mr = 412.41 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 20.874 (2) Å | µ = 0.11 mm−1 |
b = 11.5433 (9) Å | T = 173 K |
c = 8.7162 (9) Å | 0.60 × 0.60 × 0.20 mm |
β = 100.708 (9)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 2943 reflections with I > 2σ(I) |
9751 measured reflections | Rint = 0.078 |
3844 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.047 | 22 restraints |
wR(F2) = 0.126 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.97 | Δρmax = 0.26 e Å−3 |
3844 reflections | Δρmin = −0.24 e Å−3 |
285 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
N1 | 0.66679 (7) | 0.53815 (13) | 0.41046 (17) | 0.0360 (3) | |
H1 | 0.6368 (14) | 0.492 (2) | 0.341 (3) | 0.073 (8)* | |
C2 | 0.70735 (8) | 0.48757 (15) | 0.53845 (19) | 0.0348 (4) | |
O21 | 0.70772 (7) | 0.38678 (11) | 0.57660 (16) | 0.0484 (4) | |
N3 | 0.74634 (7) | 0.57599 (11) | 0.60893 (15) | 0.0328 (3) | |
C4 | 0.73370 (8) | 0.68598 (14) | 0.52766 (18) | 0.0327 (4) | |
H4A | 0.7727 | 0.7145 | 0.4898 | 0.039* | |
H4B | 0.7190 | 0.7457 | 0.5950 | 0.039* | |
C5 | 0.67955 (8) | 0.65254 (15) | 0.39306 (18) | 0.0332 (4) | |
O51 | 0.65300 (6) | 0.71682 (11) | 0.29060 (14) | 0.0440 (3) | |
N6 | 0.79325 (7) | 0.55227 (12) | 0.73625 (15) | 0.0317 (3) | |
C7 | 0.82855 (8) | 0.63851 (14) | 0.79451 (18) | 0.0310 (4) | |
H7 | 0.8210 | 0.7135 | 0.7499 | 0.037* | |
C8 | 0.87985 (8) | 0.62031 (14) | 0.92860 (18) | 0.0311 (4) | |
O9 | 0.89185 (5) | 0.50962 (9) | 0.98338 (12) | 0.0305 (3) | |
C10 | 0.94202 (8) | 0.52129 (15) | 1.10720 (19) | 0.0326 (4) | |
C11 | 0.96170 (8) | 0.63200 (16) | 1.1323 (2) | 0.0385 (4) | |
H11 | 0.9956 | 0.6603 | 1.2114 | 0.046* | |
C12 | 0.92099 (8) | 0.69690 (15) | 1.0155 (2) | 0.0375 (4) | |
H12 | 0.9221 | 0.7783 | 1.0005 | 0.045* | |
N13 | 0.96523 (7) | 0.41673 (13) | 1.18270 (18) | 0.0386 (4) | |
O14 | 0.93963 (6) | 0.32441 (11) | 1.13676 (16) | 0.0482 (4) | |
O15 | 1.01178 (7) | 0.42607 (13) | 1.29381 (17) | 0.0539 (4) | |
C3A | 0.74350 (11) | 1.0515 (2) | 0.6033 (2) | 0.0528 (5) | |
H3A1 | 0.7645 | 1.0803 | 0.5192 | 0.079* | 0.926 (5) |
H3A2 | 0.7168 | 1.1131 | 0.6365 | 0.079* | 0.926 (5) |
H3A3 | 0.7158 | 0.9851 | 0.5656 | 0.079* | 0.926 (5) |
H3A4 | 0.7192 | 1.1159 | 0.5466 | 0.079* | 0.074 (5) |
H3A5 | 0.7129 | 0.9973 | 0.6378 | 0.079* | 0.074 (5) |
H3A6 | 0.7683 | 1.0112 | 0.5345 | 0.079* | 0.074 (5) |
O1A | 0.80822 (7) | 0.91085 (10) | 0.76794 (17) | 0.0494 (4) | |
C5A | 0.81159 (12) | 1.22201 (16) | 0.8097 (3) | 0.0574 (6) | |
H5A1 | 0.7971 | 1.2384 | 0.6983 | 0.086* | 0.926 (5) |
H5A2 | 0.8508 | 1.2674 | 0.8497 | 0.086* | 0.926 (5) |
H5A3 | 0.7770 | 1.2429 | 0.8666 | 0.086* | 0.926 (5) |
H5A4 | 0.7847 | 1.2800 | 0.7453 | 0.086* | 0.074 (5) |
H5A5 | 0.8576 | 1.2349 | 0.8048 | 0.086* | 0.074 (5) |
H5A6 | 0.8055 | 1.2288 | 0.9181 | 0.086* | 0.074 (5) |
C6A | 0.87552 (10) | 1.06610 (17) | 0.9677 (2) | 0.0477 (5) | |
H6A1 | 0.8616 | 1.0933 | 1.0629 | 0.072* | 0.926 (5) |
H6A2 | 0.9173 | 1.1019 | 0.9597 | 0.072* | 0.926 (5) |
H6A3 | 0.8804 | 0.9817 | 0.9719 | 0.072* | 0.926 (5) |
H6A4 | 0.8702 | 1.1505 | 0.9648 | 0.072* | 0.074 (5) |
H6A5 | 0.9200 | 1.0464 | 0.9561 | 0.072* | 0.074 (5) |
H6A6 | 0.8675 | 1.0364 | 1.0678 | 0.072* | 0.074 (5) |
C2A | 0.79502 (9) | 1.01455 (16) | 0.7401 (2) | 0.0368 (6) | 0.926 (5) |
N4A | 0.82642 (8) | 1.09815 (13) | 0.8311 (2) | 0.0395 (5) | 0.926 (5) |
C2A' | 0.8266 (9) | 1.0112 (13) | 0.834 (2) | 0.031 (7)* | 0.074 (5) |
N4A' | 0.7910 (9) | 1.0991 (13) | 0.748 (2) | 0.045 (7)* | 0.074 (5) |
C3B | 0.60868 (11) | 0.2194 (2) | 0.3047 (3) | 0.0591 (6) | |
H3B1 | 0.5842 | 0.1623 | 0.3539 | 0.089* | 0.881 (6) |
H3B2 | 0.6395 | 0.2601 | 0.3854 | 0.089* | 0.881 (6) |
H3B3 | 0.6327 | 0.1798 | 0.2335 | 0.089* | 0.881 (6) |
H3B4 | 0.6207 | 0.1380 | 0.3250 | 0.089* | 0.119 (6) |
H3B5 | 0.6038 | 0.2572 | 0.4026 | 0.089* | 0.119 (6) |
H3B6 | 0.6428 | 0.2587 | 0.2610 | 0.089* | 0.119 (6) |
O1B | 0.56823 (7) | 0.41347 (12) | 0.23160 (17) | 0.0537 (4) | |
C5B | 0.50137 (15) | 0.1400 (2) | 0.0829 (3) | 0.0854 (9) | |
H5B1 | 0.4612 | 0.1273 | 0.0064 | 0.128* | 0.881 (6) |
H5B2 | 0.4983 | 0.1001 | 0.1804 | 0.128* | 0.881 (6) |
H5B3 | 0.5386 | 0.1096 | 0.0417 | 0.128* | 0.881 (6) |
H5B4 | 0.5154 | 0.0601 | 0.1072 | 0.128* | 0.119 (6) |
H5B5 | 0.5038 | 0.1572 | −0.0260 | 0.128* | 0.119 (6) |
H5B6 | 0.4564 | 0.1497 | 0.0984 | 0.128* | 0.119 (6) |
C6B | 0.46290 (12) | 0.3472 (3) | 0.0326 (3) | 0.0775 (8) | |
H6B1 | 0.4283 | 0.3052 | −0.0370 | 0.116* | 0.881 (6) |
H6B2 | 0.4844 | 0.4007 | −0.0290 | 0.116* | 0.881 (6) |
H6B3 | 0.4439 | 0.3911 | 0.1093 | 0.116* | 0.881 (6) |
H6B4 | 0.4469 | 0.2693 | 0.0016 | 0.116* | 0.119 (6) |
H6B5 | 0.4714 | 0.3892 | −0.0593 | 0.116* | 0.119 (6) |
H6B6 | 0.4299 | 0.3889 | 0.0777 | 0.116* | 0.119 (6) |
C2B | 0.56159 (11) | 0.3062 (2) | 0.2134 (3) | 0.0437 (7) | 0.881 (6) |
N4B | 0.51037 (10) | 0.26517 (18) | 0.1130 (2) | 0.0542 (7) | 0.881 (6) |
C2B' | 0.5284 (8) | 0.3380 (12) | 0.1584 (19) | 0.053 (6)* | 0.119 (6) |
N4B' | 0.5474 (6) | 0.2258 (11) | 0.1942 (15) | 0.047 (5)* | 0.119 (6) |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0303 (7) | 0.0406 (8) | 0.0345 (7) | −0.0045 (6) | −0.0006 (6) | 0.0006 (6) |
C2 | 0.0314 (8) | 0.0378 (9) | 0.0344 (9) | −0.0036 (7) | 0.0044 (7) | 0.0023 (7) |
O21 | 0.0476 (7) | 0.0380 (7) | 0.0542 (8) | −0.0106 (6) | −0.0047 (6) | 0.0087 (6) |
N3 | 0.0340 (7) | 0.0325 (7) | 0.0291 (7) | −0.0023 (6) | −0.0016 (6) | 0.0034 (5) |
C4 | 0.0354 (8) | 0.0330 (9) | 0.0284 (8) | −0.0002 (7) | 0.0023 (6) | 0.0005 (6) |
C5 | 0.0298 (8) | 0.0396 (9) | 0.0300 (8) | 0.0012 (7) | 0.0054 (7) | −0.0004 (7) |
O51 | 0.0423 (7) | 0.0495 (8) | 0.0361 (6) | 0.0042 (6) | −0.0031 (5) | 0.0074 (5) |
N6 | 0.0305 (7) | 0.0356 (7) | 0.0278 (7) | 0.0008 (6) | 0.0023 (5) | 0.0018 (5) |
C7 | 0.0343 (8) | 0.0299 (8) | 0.0286 (8) | 0.0026 (7) | 0.0048 (6) | 0.0003 (6) |
C8 | 0.0309 (8) | 0.0305 (8) | 0.0316 (8) | 0.0018 (7) | 0.0049 (7) | −0.0010 (6) |
O9 | 0.0263 (5) | 0.0315 (6) | 0.0317 (6) | 0.0008 (4) | −0.0001 (5) | −0.0012 (4) |
C10 | 0.0247 (7) | 0.0392 (9) | 0.0319 (8) | 0.0023 (7) | 0.0002 (6) | −0.0034 (7) |
C11 | 0.0320 (8) | 0.0429 (10) | 0.0379 (9) | −0.0008 (7) | −0.0010 (7) | −0.0077 (7) |
C12 | 0.0389 (9) | 0.0310 (8) | 0.0408 (9) | −0.0016 (7) | 0.0031 (7) | −0.0037 (7) |
N13 | 0.0293 (7) | 0.0433 (8) | 0.0413 (8) | 0.0039 (6) | 0.0018 (6) | 0.0024 (6) |
O14 | 0.0426 (7) | 0.0368 (7) | 0.0612 (8) | 0.0011 (6) | −0.0005 (6) | 0.0065 (6) |
O15 | 0.0395 (7) | 0.0634 (9) | 0.0506 (8) | 0.0074 (6) | −0.0133 (6) | 0.0035 (6) |
C3A | 0.0483 (11) | 0.0615 (13) | 0.0474 (11) | 0.0023 (10) | 0.0057 (9) | 0.0086 (9) |
O1A | 0.0585 (8) | 0.0308 (7) | 0.0609 (9) | −0.0011 (6) | 0.0167 (7) | 0.0028 (6) |
C5A | 0.0763 (14) | 0.0305 (10) | 0.0669 (13) | 0.0080 (10) | 0.0173 (11) | 0.0036 (9) |
C6A | 0.0481 (10) | 0.0477 (11) | 0.0453 (10) | −0.0017 (9) | 0.0033 (8) | 0.0049 (8) |
C2A | 0.0383 (10) | 0.0350 (11) | 0.0401 (11) | −0.0002 (8) | 0.0153 (9) | 0.0040 (8) |
N4A | 0.0438 (10) | 0.0314 (9) | 0.0435 (10) | 0.0044 (7) | 0.0089 (8) | 0.0048 (6) |
C3B | 0.0498 (11) | 0.0551 (13) | 0.0738 (14) | 0.0010 (10) | 0.0148 (10) | −0.0088 (11) |
O1B | 0.0461 (7) | 0.0476 (8) | 0.0609 (9) | −0.0120 (6) | −0.0068 (6) | −0.0081 (6) |
C5B | 0.102 (2) | 0.0764 (17) | 0.0851 (18) | −0.0538 (17) | 0.0357 (16) | −0.0341 (14) |
C6B | 0.0633 (14) | 0.0932 (18) | 0.0636 (14) | −0.0358 (14) | −0.0201 (12) | 0.0175 (13) |
C2B | 0.0424 (12) | 0.0474 (15) | 0.0434 (12) | −0.0128 (10) | 0.0138 (10) | −0.0089 (9) |
N4B | 0.0576 (13) | 0.0585 (13) | 0.0454 (11) | −0.0291 (10) | 0.0070 (9) | −0.0074 (9) |
Geometric parameters (Å, º) top
N1—C5 | 1.361 (2) | C5A—H5A5 | 0.9800 |
N1—C2 | 1.397 (2) | C5A—H5A6 | 0.9800 |
N1—H1 | 0.95 (3) | C6A—N4A | 1.467 (2) |
C2—O21 | 1.210 (2) | C6A—C2A' | 1.538 (13) |
C2—N3 | 1.377 (2) | C6A—H6A1 | 0.9800 |
N3—N6 | 1.3645 (18) | C6A—H6A2 | 0.9800 |
N3—C4 | 1.454 (2) | C6A—H6A3 | 0.9800 |
C4—C5 | 1.520 (2) | C6A—H6A4 | 0.9800 |
C4—H4A | 0.9900 | C6A—H6A5 | 0.9800 |
C4—H4B | 0.9900 | C6A—H6A6 | 0.9800 |
C5—O51 | 1.213 (2) | C2A—N4A | 1.341 (3) |
N6—C7 | 1.285 (2) | C2A'—N4A' | 1.392 (17) |
C7—C8 | 1.446 (2) | C3B—N4B' | 1.452 (11) |
C7—H7 | 0.9500 | C3B—C2B | 1.520 (3) |
C8—C12 | 1.361 (2) | C3B—H3B1 | 0.9800 |
C8—O9 | 1.3707 (19) | C3B—H3B2 | 0.9800 |
O9—C10 | 1.3637 (18) | C3B—H3B3 | 0.9800 |
C10—C11 | 1.348 (2) | C3B—H3B4 | 0.9800 |
C10—N13 | 1.416 (2) | C3B—H3B5 | 0.9800 |
C11—C12 | 1.414 (2) | C3B—H3B6 | 0.9800 |
C11—H11 | 0.9500 | O1B—C2B | 1.253 (3) |
C12—H12 | 0.9500 | O1B—C2B' | 1.289 (13) |
N13—O14 | 1.2256 (19) | C5B—N4B | 1.474 (3) |
N13—O15 | 1.243 (2) | C5B—N4B' | 1.581 (11) |
C3A—C2A | 1.511 (3) | C5B—H5B1 | 0.9800 |
C3A—N4A' | 1.550 (14) | C5B—H5B2 | 0.9800 |
C3A—H3A1 | 0.9800 | C5B—H5B3 | 0.9800 |
C3A—H3A2 | 0.9800 | C5B—H5B4 | 0.9800 |
C3A—H3A3 | 0.9800 | C5B—H5B5 | 0.9800 |
C3A—H3A4 | 0.9800 | C5B—H5B6 | 0.9800 |
C3A—H3A5 | 0.9800 | C6B—N4B | 1.454 (3) |
C3A—H3A6 | 0.9800 | C6B—C2B' | 1.589 (13) |
O1A—C2A | 1.242 (2) | C6B—H6B1 | 0.9800 |
O1A—C2A' | 1.317 (13) | C6B—H6B2 | 0.9800 |
C5A—N4A | 1.468 (2) | C6B—H6B3 | 0.9800 |
C5A—N4A' | 1.551 (14) | C6B—H6B4 | 0.9800 |
C5A—H5A1 | 0.9800 | C6B—H6B5 | 0.9800 |
C5A—H5A2 | 0.9800 | C6B—H6B6 | 0.9800 |
C5A—H5A3 | 0.9800 | C2B—N4B | 1.336 (3) |
C5A—H5A4 | 0.9800 | C2B'—N4B' | 1.374 (16) |
| | | |
C5—N1—C2 | 113.10 (14) | C2A'—C6A—H6A6 | 109.5 |
C5—N1—H1 | 126.6 (15) | H6A2—C6A—H6A6 | 120.8 |
C2—N1—H1 | 120.1 (15) | H6A3—C6A—H6A6 | 69.7 |
O21—C2—N3 | 128.12 (15) | H6A4—C6A—H6A6 | 109.5 |
O21—C2—N1 | 126.40 (15) | H6A5—C6A—H6A6 | 109.5 |
N3—C2—N1 | 105.47 (14) | O1A—C2A—N4A | 120.77 (17) |
N6—N3—C2 | 119.31 (13) | O1A—C2A—C3A | 121.73 (18) |
N6—N3—C4 | 127.54 (13) | N4A—C2A—C3A | 117.50 (17) |
C2—N3—C4 | 113.03 (13) | C2A—N4A—C6A | 119.34 (15) |
N3—C4—C5 | 101.29 (13) | C2A—N4A—C5A | 123.88 (17) |
N3—C4—H4A | 111.5 | C6A—N4A—C5A | 116.64 (17) |
C5—C4—H4A | 111.5 | O1A—C2A'—N4A' | 108.9 (11) |
N3—C4—H4B | 111.5 | O1A—C2A'—C6A | 142.3 (12) |
C5—C4—H4B | 111.5 | N4A'—C2A'—C6A | 108.8 (10) |
H4A—C4—H4B | 109.3 | C2A'—N4A'—C5A | 113.1 (11) |
O51—C5—N1 | 127.11 (15) | C2A'—N4A'—C3A | 112.1 (10) |
O51—C5—C4 | 125.83 (15) | C5A—N4A'—C3A | 134.6 (11) |
N1—C5—C4 | 107.06 (13) | N4B'—C3B—H3B1 | 81.9 |
C7—N6—N3 | 115.97 (13) | C2B—C3B—H3B1 | 109.5 |
N6—C7—C8 | 119.39 (14) | N4B'—C3B—H3B2 | 146.1 |
N6—C7—H7 | 120.3 | C2B—C3B—H3B2 | 109.5 |
C8—C7—H7 | 120.3 | H3B1—C3B—H3B2 | 109.5 |
C12—C8—O9 | 110.87 (13) | N4B'—C3B—H3B3 | 95.5 |
C12—C8—C7 | 130.66 (15) | C2B—C3B—H3B3 | 109.5 |
O9—C8—C7 | 118.48 (14) | H3B1—C3B—H3B3 | 109.5 |
C10—O9—C8 | 104.32 (12) | H3B2—C3B—H3B3 | 109.5 |
C11—C10—O9 | 112.84 (15) | N4B'—C3B—H3B4 | 109.5 |
C11—C10—N13 | 131.69 (15) | C2B—C3B—H3B4 | 147.7 |
O9—C10—N13 | 115.44 (14) | H3B1—C3B—H3B4 | 54.1 |
C10—C11—C12 | 105.16 (14) | H3B2—C3B—H3B4 | 102.6 |
C10—C11—H11 | 127.4 | H3B3—C3B—H3B4 | 61.5 |
C12—C11—H11 | 127.4 | N4B'—C3B—H3B5 | 109.5 |
C8—C12—C11 | 106.81 (15) | C2B—C3B—H3B5 | 90.0 |
C8—C12—H12 | 126.6 | H3B1—C3B—H3B5 | 76.8 |
C11—C12—H12 | 126.6 | H3B2—C3B—H3B5 | 47.3 |
O14—N13—O15 | 124.08 (15) | H3B3—C3B—H3B5 | 155.0 |
O14—N13—C10 | 119.90 (14) | H3B4—C3B—H3B5 | 109.5 |
O15—N13—C10 | 116.02 (15) | N4B'—C3B—H3B6 | 109.5 |
C2A—C3A—H3A1 | 109.5 | C2B—C3B—H3B6 | 86.4 |
N4A'—C3A—H3A1 | 100.3 | H3B1—C3B—H3B6 | 163.2 |
C2A—C3A—H3A2 | 109.5 | H3B2—C3B—H3B6 | 68.3 |
N4A'—C3A—H3A2 | 79.5 | H3B3—C3B—H3B6 | 58.3 |
H3A1—C3A—H3A2 | 109.5 | H3B4—C3B—H3B6 | 109.5 |
C2A—C3A—H3A3 | 109.5 | H3B5—C3B—H3B6 | 109.5 |
N4A'—C3A—H3A3 | 143.0 | N4B—C5B—H5B1 | 109.5 |
H3A1—C3A—H3A3 | 109.5 | N4B'—C5B—H5B1 | 149.0 |
H3A2—C3A—H3A3 | 109.5 | N4B—C5B—H5B2 | 109.5 |
C2A—C3A—H3A4 | 146.9 | N4B'—C5B—H5B2 | 83.8 |
N4A'—C3A—H3A4 | 109.5 | H5B1—C5B—H5B2 | 109.5 |
H3A1—C3A—H3A4 | 68.1 | N4B—C5B—H5B3 | 109.5 |
H3A2—C3A—H3A4 | 47.9 | N4B'—C5B—H5B3 | 90.9 |
H3A3—C3A—H3A4 | 101.9 | H5B1—C5B—H5B3 | 109.5 |
C2A—C3A—H3A5 | 89.2 | H5B2—C5B—H5B3 | 109.5 |
N4A'—C3A—H3A5 | 109.5 | N4B—C5B—H5B4 | 149.5 |
H3A1—C3A—H3A5 | 148.6 | N4B'—C5B—H5B4 | 109.5 |
H3A2—C3A—H3A5 | 86.2 | H5B1—C5B—H5B4 | 100.9 |
H3A4—C3A—H3A5 | 109.5 | H5B2—C5B—H5B4 | 55.5 |
C2A—C3A—H3A6 | 88.2 | H5B3—C5B—H5B4 | 61.0 |
N4A'—C3A—H3A6 | 109.5 | N4B—C5B—H5B5 | 86.9 |
H3A1—C3A—H3A6 | 48.8 | N4B'—C5B—H5B5 | 109.5 |
H3A2—C3A—H3A6 | 156.8 | H5B1—C5B—H5B5 | 64.1 |
H3A3—C3A—H3A6 | 76.7 | H5B2—C5B—H5B5 | 163.5 |
H3A4—C3A—H3A6 | 109.5 | H5B3—C5B—H5B5 | 62.0 |
H3A5—C3A—H3A6 | 109.5 | H5B4—C5B—H5B5 | 109.5 |
N4A—C5A—H5A1 | 109.5 | N4B—C5B—H5B6 | 87.6 |
N4A'—C5A—H5A1 | 79.4 | N4B'—C5B—H5B6 | 109.5 |
N4A—C5A—H5A2 | 109.5 | H5B1—C5B—H5B6 | 52.4 |
N4A'—C5A—H5A2 | 140.6 | H5B2—C5B—H5B6 | 73.4 |
H5A1—C5A—H5A2 | 109.5 | H5B3—C5B—H5B6 | 159.6 |
N4A—C5A—H5A3 | 109.5 | H5B4—C5B—H5B6 | 109.5 |
N4A'—C5A—H5A3 | 102.7 | H5B5—C5B—H5B6 | 109.5 |
H5A1—C5A—H5A3 | 109.5 | N4B—C6B—H6B1 | 109.5 |
H5A2—C5A—H5A3 | 109.5 | C2B'—C6B—H6B1 | 146.5 |
N4A—C5A—H5A4 | 145.4 | N4B—C6B—H6B2 | 109.5 |
N4A'—C5A—H5A4 | 109.5 | C2B'—C6B—H6B2 | 89.8 |
H5A2—C5A—H5A4 | 100.9 | H6B1—C6B—H6B2 | 109.5 |
H5A3—C5A—H5A4 | 74.0 | N4B—C6B—H6B3 | 109.5 |
N4A—C5A—H5A5 | 88.1 | C2B'—C6B—H6B3 | 88.2 |
N4A'—C5A—H5A5 | 109.5 | H6B1—C6B—H6B3 | 109.5 |
H5A1—C5A—H5A5 | 93.0 | H6B2—C6B—H6B3 | 109.5 |
H5A3—C5A—H5A5 | 143.6 | N4B—C6B—H6B4 | 72.6 |
H5A4—C5A—H5A5 | 109.5 | C2B'—C6B—H6B4 | 109.5 |
N4A—C5A—H5A6 | 91.0 | H6B2—C6B—H6B4 | 126.5 |
N4A'—C5A—H5A6 | 109.5 | H6B3—C6B—H6B4 | 120.2 |
H5A1—C5A—H5A6 | 150.2 | N4B—C6B—H6B5 | 120.3 |
H5A2—C5A—H5A6 | 82.1 | C2B'—C6B—H6B5 | 109.5 |
H5A4—C5A—H5A6 | 109.5 | H6B1—C6B—H6B5 | 88.0 |
H5A5—C5A—H5A6 | 109.5 | H6B3—C6B—H6B5 | 117.4 |
N4A—C6A—H6A1 | 109.5 | H6B4—C6B—H6B5 | 109.5 |
C2A'—C6A—H6A1 | 121.1 | N4B—C6B—H6B6 | 126.3 |
N4A—C6A—H6A2 | 109.5 | C2B'—C6B—H6B6 | 109.5 |
C2A'—C6A—H6A2 | 126.4 | H6B1—C6B—H6B6 | 90.0 |
H6A1—C6A—H6A2 | 109.5 | H6B2—C6B—H6B6 | 109.8 |
N4A—C6A—H6A3 | 109.5 | H6B4—C6B—H6B6 | 109.5 |
C2A'—C6A—H6A3 | 70.6 | H6B5—C6B—H6B6 | 109.5 |
H6A1—C6A—H6A3 | 109.5 | O1B—C2B—N4B | 119.3 (2) |
H6A2—C6A—H6A3 | 109.5 | O1B—C2B—C3B | 122.65 (19) |
N4A—C6A—H6A4 | 70.7 | N4B—C2B—C3B | 118.0 (2) |
C2A'—C6A—H6A4 | 109.5 | C2B—N4B—C6B | 118.4 (2) |
H6A1—C6A—H6A4 | 69.7 | C2B—N4B—C5B | 121.6 (2) |
H6A2—C6A—H6A4 | 71.2 | C6B—N4B—C5B | 120.0 (2) |
H6A3—C6A—H6A4 | 179.1 | O1B—C2B'—N4B' | 113.1 (11) |
N4A—C6A—H6A5 | 120.5 | O1B—C2B'—C6B | 133.6 (10) |
C2A'—C6A—H6A5 | 109.5 | N4B'—C2B'—C6B | 113.3 (10) |
H6A1—C6A—H6A5 | 126.7 | C2B'—N4B'—C3B | 112.4 (10) |
H6A3—C6A—H6A5 | 71.2 | C2B'—N4B'—C5B | 109.5 (9) |
H6A4—C6A—H6A5 | 109.5 | C3B—N4B'—C5B | 137.3 (9) |
N4A—C6A—H6A6 | 127.0 | | |
| | | |
C5—N1—C2—O21 | −177.29 (18) | C2A'—C6A—N4A—C5A | 174.0 (14) |
C5—N1—C2—N3 | 2.2 (2) | N4A'—C5A—N4A—C2A | 2.7 (15) |
O21—C2—N3—N6 | 1.7 (3) | N4A'—C5A—N4A—C6A | −172.9 (15) |
N1—C2—N3—N6 | −177.80 (14) | C2A—O1A—C2A'—N4A' | 2.6 (11) |
O21—C2—N3—C4 | 178.06 (18) | C2A—O1A—C2A'—C6A | −174 (4) |
N1—C2—N3—C4 | −1.40 (19) | N4A—C6A—C2A'—O1A | 173 (4) |
N6—N3—C4—C5 | 176.26 (15) | N4A—C6A—C2A'—N4A' | −3.9 (10) |
C2—N3—C4—C5 | 0.22 (18) | O1A—C2A'—N4A'—C5A | −176.8 (14) |
C2—N1—C5—O51 | 178.19 (17) | C6A—C2A'—N4A'—C5A | 1 (2) |
C2—N1—C5—C4 | −2.08 (19) | O1A—C2A'—N4A'—C3A | −1 (2) |
N3—C4—C5—O51 | −179.18 (16) | C6A—C2A'—N4A'—C3A | 176.4 (13) |
N3—C4—C5—N1 | 1.08 (17) | N4A—C5A—N4A'—C2A' | 3.5 (11) |
C2—N3—N6—C7 | 178.88 (15) | N4A—C5A—N4A'—C3A | −171 (3) |
C4—N3—N6—C7 | 3.1 (2) | C2A—C3A—N4A'—C2A' | −1.5 (11) |
N3—N6—C7—C8 | −179.32 (14) | C2A—C3A—N4A'—C5A | 173 (3) |
N6—C7—C8—C12 | −176.15 (18) | C2B'—O1B—C2B—N4B | 3.7 (14) |
N6—C7—C8—O9 | 4.1 (2) | C2B'—O1B—C2B—C3B | −174.5 (15) |
C12—C8—O9—C10 | −0.06 (18) | N4B'—C3B—C2B—O1B | 174.0 (10) |
C7—C8—O9—C10 | 179.77 (14) | N4B'—C3B—C2B—N4B | −4.3 (9) |
C8—O9—C10—C11 | 0.01 (19) | O1B—C2B—N4B—C6B | −2.2 (3) |
C8—O9—C10—N13 | −178.21 (14) | C3B—C2B—N4B—C6B | 176.2 (2) |
O9—C10—C11—C12 | 0.0 (2) | O1B—C2B—N4B—C5B | 177.8 (2) |
N13—C10—C11—C12 | 177.89 (18) | C3B—C2B—N4B—C5B | −3.8 (3) |
O9—C8—C12—C11 | 0.1 (2) | C2B'—C6B—N4B—C2B | −1.8 (12) |
C7—C8—C12—C11 | −179.72 (17) | C2B'—C6B—N4B—C5B | 178.3 (12) |
C10—C11—C12—C8 | −0.1 (2) | N4B'—C5B—N4B—C2B | 6.7 (8) |
C11—C10—N13—O14 | −178.84 (19) | N4B'—C5B—N4B—C6B | −173.4 (9) |
O9—C10—N13—O14 | −1.0 (2) | C2B—O1B—C2B'—N4B' | 3.5 (7) |
C11—C10—N13—O15 | 0.9 (3) | C2B—O1B—C2B'—C6B | −175 (3) |
O9—C10—N13—O15 | 178.66 (15) | N4B—C6B—C2B'—O1B | 173 (3) |
C2A'—O1A—C2A—N4A | 3.3 (15) | N4B—C6B—C2B'—N4B' | −4.9 (7) |
C2A'—O1A—C2A—C3A | −176.8 (15) | O1B—C2B'—N4B'—C3B | −1 (2) |
N4A'—C3A—C2A—O1A | 175.5 (14) | C6B—C2B'—N4B'—C3B | 177.7 (10) |
N4A'—C3A—C2A—N4A | −4.6 (14) | O1B—C2B'—N4B'—C5B | −172.3 (11) |
O1A—C2A—N4A—C6A | −1.8 (3) | C6B—C2B'—N4B'—C5B | 6.3 (18) |
C3A—C2A—N4A—C6A | 178.29 (18) | C2B—C3B—N4B'—C2B' | −2.4 (9) |
O1A—C2A—N4A—C5A | −177.25 (19) | C2B—C3B—N4B'—C5B | 166 (2) |
C3A—C2A—N4A—C5A | 2.8 (3) | N4B—C5B—N4B'—C2B' | −0.4 (9) |
C2A'—C6A—N4A—C2A | −1.8 (13) | N4B—C5B—N4B'—C3B | −169 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1B | 0.95 (3) | 1.81 (3) | 2.7463 (19) | 169 (3) |
C7—H7···O1A | 0.95 | 2.30 | 3.175 (2) | 152 |
(II) 2,6-diacetaminopyridine dimethylformamide monosolvate
top
Crystal data top
C9H11N3O2·C3H7NO | F(000) = 568 |
Mr = 266.30 | Dx = 1.270 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 11.3031 (7) Å | Cell parameters from 6874 reflections |
b = 13.1539 (8) Å | θ = 3.3–25.9° |
c = 9.3959 (5) Å | µ = 0.09 mm−1 |
β = 94.327 (5)° | T = 173 K |
V = 1393.00 (14) Å3 | Block, colourless |
Z = 4 | 0.50 × 0.40 × 0.40 mm |
Data collection top
Stoe IPDS II two-circle diffractometer | 1967 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.100 |
Graphite monochromator | θmax = 25.6°, θmin = 3.3° |
ω scans | h = −13→13 |
12406 measured reflections | k = −15→15 |
2603 independent reflections | l = −10→11 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.042 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.099 | w = 1/[σ2(Fo2) + (0.0587P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.93 | (Δ/σ)max < 0.001 |
2603 reflections | Δρmax = 0.24 e Å−3 |
187 parameters | Δρmin = −0.19 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.024 (3) |
Crystal data top
C9H11N3O2·C3H7NO | V = 1393.00 (14) Å3 |
Mr = 266.30 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.3031 (7) Å | µ = 0.09 mm−1 |
b = 13.1539 (8) Å | T = 173 K |
c = 9.3959 (5) Å | 0.50 × 0.40 × 0.40 mm |
β = 94.327 (5)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 1967 reflections with I > 2σ(I) |
12406 measured reflections | Rint = 0.100 |
2603 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.099 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.93 | Δρmax = 0.24 e Å−3 |
2603 reflections | Δρmin = −0.19 e Å−3 |
187 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
N1 | 0.81887 (10) | 0.42930 (9) | 0.33685 (12) | 0.0280 (3) | |
C2 | 0.77593 (12) | 0.52246 (11) | 0.30726 (16) | 0.0299 (3) | |
C3 | 0.77636 (13) | 0.59988 (11) | 0.40791 (17) | 0.0356 (4) | |
H3 | 0.7454 | 0.6653 | 0.3838 | 0.043* | |
C4 | 0.82346 (14) | 0.57795 (12) | 0.54412 (17) | 0.0372 (4) | |
H4 | 0.8245 | 0.6291 | 0.6156 | 0.045* | |
C5 | 0.86915 (13) | 0.48275 (12) | 0.57834 (16) | 0.0340 (4) | |
H5 | 0.9016 | 0.4672 | 0.6720 | 0.041* | |
C6 | 0.86552 (12) | 0.41064 (11) | 0.46952 (15) | 0.0278 (3) | |
N21 | 0.72814 (12) | 0.53106 (10) | 0.16546 (14) | 0.0347 (3) | |
H21 | 0.7197 (16) | 0.4710 (17) | 0.118 (2) | 0.053 (5)* | |
C22 | 0.69884 (14) | 0.61764 (12) | 0.09140 (18) | 0.0371 (4) | |
C23 | 0.64755 (17) | 0.59993 (13) | −0.05894 (19) | 0.0469 (4) | |
H23A | 0.5641 | 0.6209 | −0.0674 | 0.070* | 0.42 (5) |
H23B | 0.6532 | 0.5276 | −0.0822 | 0.070* | 0.42 (5) |
H23C | 0.6919 | 0.6398 | −0.1251 | 0.070* | 0.42 (5) |
H23D | 0.5674 | 0.5718 | −0.0572 | 0.070* | 0.58 (5) |
H23E | 0.6978 | 0.5519 | −0.1067 | 0.070* | 0.58 (5) |
H23F | 0.6440 | 0.6646 | −0.1111 | 0.070* | 0.58 (5) |
O24 | 0.71192 (12) | 0.70272 (9) | 0.14172 (14) | 0.0516 (3) | |
N61 | 0.91380 (11) | 0.31284 (10) | 0.48319 (13) | 0.0285 (3) | |
H61 | 0.9215 (15) | 0.2810 (14) | 0.404 (2) | 0.042 (5)* | |
C62 | 0.95180 (12) | 0.26280 (12) | 0.60424 (15) | 0.0310 (3) | |
C63 | 1.00524 (16) | 0.16042 (13) | 0.58083 (17) | 0.0428 (4) | |
H63A | 1.0861 | 0.1584 | 0.6265 | 0.064* | 0.66 (2) |
H63B | 1.0075 | 0.1481 | 0.4782 | 0.064* | 0.66 (2) |
H63C | 0.9571 | 0.1078 | 0.6225 | 0.064* | 0.66 (2) |
H63D | 0.9488 | 0.1187 | 0.5220 | 0.064* | 0.34 (2) |
H63E | 1.0236 | 0.1270 | 0.6731 | 0.064* | 0.34 (2) |
H63F | 1.0783 | 0.1686 | 0.5320 | 0.064* | 0.34 (2) |
O64 | 0.94306 (11) | 0.29781 (8) | 0.72423 (11) | 0.0419 (3) | |
O1A | 0.66772 (10) | 0.34158 (9) | 0.02033 (13) | 0.0424 (3) | |
C2A | 0.65996 (13) | 0.26859 (12) | 0.10092 (17) | 0.0345 (4) | |
H2A | 0.7024 | 0.2723 | 0.1920 | 0.041* | |
N3A | 0.59688 (11) | 0.18486 (10) | 0.07072 (14) | 0.0342 (3) | |
C4A | 0.59146 (16) | 0.10297 (13) | 0.1735 (2) | 0.0453 (4) | |
H4A1 | 0.6417 | 0.1197 | 0.2599 | 0.068* | |
H4A2 | 0.6196 | 0.0399 | 0.1321 | 0.068* | |
H4A3 | 0.5093 | 0.0940 | 0.1980 | 0.068* | |
C5A | 0.53209 (15) | 0.17015 (14) | −0.06731 (19) | 0.0428 (4) | |
H5A1 | 0.5349 | 0.2328 | −0.1234 | 0.064* | |
H5A2 | 0.4493 | 0.1532 | −0.0534 | 0.064* | |
H5A3 | 0.5684 | 0.1146 | −0.1182 | 0.064* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0304 (6) | 0.0251 (6) | 0.0284 (6) | −0.0028 (5) | 0.0007 (5) | −0.0004 (5) |
C2 | 0.0282 (7) | 0.0259 (8) | 0.0354 (8) | −0.0036 (5) | 0.0021 (6) | 0.0004 (6) |
C3 | 0.0358 (8) | 0.0253 (8) | 0.0462 (9) | −0.0023 (6) | 0.0060 (7) | −0.0044 (7) |
C4 | 0.0425 (9) | 0.0316 (8) | 0.0381 (9) | −0.0051 (6) | 0.0075 (7) | −0.0105 (6) |
C5 | 0.0372 (8) | 0.0364 (9) | 0.0286 (8) | −0.0047 (6) | 0.0035 (6) | −0.0047 (6) |
C6 | 0.0274 (7) | 0.0289 (7) | 0.0274 (7) | −0.0048 (5) | 0.0037 (6) | −0.0013 (6) |
N21 | 0.0427 (7) | 0.0242 (7) | 0.0357 (7) | 0.0002 (5) | −0.0061 (5) | 0.0000 (5) |
C22 | 0.0363 (8) | 0.0267 (8) | 0.0477 (10) | 0.0003 (6) | −0.0007 (7) | 0.0054 (7) |
C23 | 0.0551 (10) | 0.0372 (9) | 0.0465 (10) | 0.0033 (8) | −0.0091 (8) | 0.0091 (7) |
O24 | 0.0676 (8) | 0.0265 (7) | 0.0586 (8) | 0.0007 (5) | −0.0088 (6) | 0.0036 (5) |
N61 | 0.0360 (7) | 0.0288 (7) | 0.0203 (6) | −0.0005 (5) | 0.0008 (5) | −0.0009 (5) |
C62 | 0.0316 (7) | 0.0371 (8) | 0.0243 (7) | −0.0056 (6) | 0.0013 (6) | 0.0025 (6) |
C63 | 0.0500 (9) | 0.0470 (10) | 0.0315 (8) | 0.0106 (8) | 0.0025 (7) | 0.0089 (7) |
O64 | 0.0614 (7) | 0.0420 (7) | 0.0222 (5) | −0.0067 (5) | 0.0020 (5) | 0.0004 (5) |
O1A | 0.0511 (7) | 0.0322 (6) | 0.0429 (6) | −0.0061 (5) | −0.0026 (5) | 0.0009 (5) |
C2A | 0.0326 (8) | 0.0333 (8) | 0.0374 (8) | 0.0022 (6) | 0.0009 (6) | −0.0049 (7) |
N3A | 0.0352 (7) | 0.0299 (7) | 0.0375 (7) | −0.0008 (5) | 0.0024 (5) | −0.0024 (5) |
C4A | 0.0518 (10) | 0.0349 (9) | 0.0498 (10) | −0.0012 (7) | 0.0081 (8) | 0.0040 (7) |
C5A | 0.0401 (9) | 0.0434 (10) | 0.0442 (9) | −0.0063 (7) | −0.0013 (7) | −0.0088 (7) |
Geometric parameters (Å, º) top
N1—C6 | 1.3390 (19) | N61—C62 | 1.3556 (19) |
N1—C2 | 1.3395 (19) | N61—H61 | 0.87 (2) |
C2—C3 | 1.389 (2) | C62—O64 | 1.2287 (18) |
C2—N21 | 1.404 (2) | C62—C63 | 1.499 (2) |
C3—C4 | 1.379 (2) | C63—H63A | 0.9800 |
C3—H3 | 0.9500 | C63—H63B | 0.9800 |
C4—C5 | 1.383 (2) | C63—H63C | 0.9800 |
C4—H4 | 0.9500 | C63—H63D | 0.9801 |
C5—C6 | 1.393 (2) | C63—H63E | 0.9801 |
C5—H5 | 0.9500 | C63—H63F | 0.9801 |
C6—N61 | 1.3995 (19) | O1A—C2A | 1.2300 (19) |
N21—C22 | 1.362 (2) | C2A—N3A | 1.331 (2) |
N21—H21 | 0.91 (2) | C2A—H2A | 0.9500 |
C22—O24 | 1.220 (2) | N3A—C4A | 1.451 (2) |
C22—C23 | 1.504 (2) | N3A—C5A | 1.453 (2) |
C23—H23A | 0.9800 | C4A—H4A1 | 0.9800 |
C23—H23B | 0.9800 | C4A—H4A2 | 0.9800 |
C23—H23C | 0.9800 | C4A—H4A3 | 0.9800 |
C23—H23D | 0.9804 | C5A—H5A1 | 0.9800 |
C23—H23E | 0.9804 | C5A—H5A2 | 0.9800 |
C23—H23F | 0.9805 | C5A—H5A3 | 0.9800 |
| | | |
C6—N1—C2 | 118.16 (12) | C62—N61—H61 | 116.3 (12) |
N1—C2—C3 | 123.14 (14) | C6—N61—H61 | 115.3 (12) |
N1—C2—N21 | 112.22 (13) | O64—C62—N61 | 123.06 (14) |
C3—C2—N21 | 124.62 (14) | O64—C62—C63 | 122.18 (13) |
C4—C3—C2 | 117.36 (14) | N61—C62—C63 | 114.76 (13) |
C4—C3—H3 | 121.3 | C62—C63—H63A | 109.5 |
C2—C3—H3 | 121.3 | C62—C63—H63B | 109.5 |
C3—C4—C5 | 121.09 (14) | C62—C63—H63C | 109.5 |
C3—C4—H4 | 119.5 | C62—C63—H63D | 109.5 |
C5—C4—H4 | 119.5 | C62—C63—H63E | 109.5 |
C4—C5—C6 | 117.13 (14) | H63D—C63—H63E | 109.5 |
C4—C5—H5 | 121.4 | C62—C63—H63F | 109.5 |
C6—C5—H5 | 121.4 | H63D—C63—H63F | 109.5 |
N1—C6—C5 | 123.11 (14) | H63E—C63—H63F | 109.5 |
N1—C6—N61 | 112.17 (12) | O1A—C2A—N3A | 125.21 (15) |
C5—C6—N61 | 124.67 (13) | O1A—C2A—H2A | 117.4 |
C22—N21—C2 | 127.83 (14) | N3A—C2A—H2A | 117.4 |
C22—N21—H21 | 117.5 (13) | C2A—N3A—C4A | 121.41 (14) |
C2—N21—H21 | 114.6 (13) | C2A—N3A—C5A | 121.75 (14) |
O24—C22—N21 | 123.46 (16) | C4A—N3A—C5A | 116.83 (14) |
O24—C22—C23 | 122.22 (15) | N3A—C4A—H4A1 | 109.5 |
N21—C22—C23 | 114.32 (14) | N3A—C4A—H4A2 | 109.5 |
C22—C23—H23A | 109.5 | H4A1—C4A—H4A2 | 109.5 |
C22—C23—H23B | 109.5 | N3A—C4A—H4A3 | 109.5 |
C22—C23—H23C | 109.5 | H4A1—C4A—H4A3 | 109.5 |
C22—C23—H23D | 109.5 | H4A2—C4A—H4A3 | 109.5 |
C22—C23—H23E | 109.5 | N3A—C5A—H5A1 | 109.5 |
H23D—C23—H23E | 109.4 | N3A—C5A—H5A2 | 109.5 |
C22—C23—H23F | 109.5 | H5A1—C5A—H5A2 | 109.5 |
H23D—C23—H23F | 109.4 | N3A—C5A—H5A3 | 109.5 |
H23E—C23—H23F | 109.4 | H5A1—C5A—H5A3 | 109.5 |
C62—N61—C6 | 128.32 (13) | H5A2—C5A—H5A3 | 109.5 |
| | | |
C6—N1—C2—C3 | −0.8 (2) | N1—C2—N21—C22 | −165.90 (14) |
C6—N1—C2—N21 | −179.05 (12) | C3—C2—N21—C22 | 15.8 (2) |
N1—C2—C3—C4 | −0.1 (2) | C2—N21—C22—O24 | 0.5 (3) |
N21—C2—C3—C4 | 177.94 (14) | C2—N21—C22—C23 | −179.08 (14) |
C2—C3—C4—C5 | 0.5 (2) | N1—C6—N61—C62 | −169.19 (13) |
C3—C4—C5—C6 | 0.1 (2) | C5—C6—N61—C62 | 13.4 (2) |
C2—N1—C6—C5 | 1.4 (2) | C6—N61—C62—O64 | 3.5 (2) |
C2—N1—C6—N61 | −176.13 (11) | C6—N61—C62—C63 | −176.79 (13) |
C4—C5—C6—N1 | −1.0 (2) | O1A—C2A—N3A—C4A | −179.06 (14) |
C4—C5—C6—N61 | 176.14 (13) | O1A—C2A—N3A—C5A | 2.1 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···O1A | 0.91 (2) | 2.00 (2) | 2.8979 (18) | 168.8 (17) |
N61—H61···O64i | 0.87 (2) | 2.01 (2) | 2.8757 (16) | 177.4 (18) |
Symmetry code: (i) x, −y+1/2, z−1/2. |
(I.II) (
E)-1-[(5-nitro-2-furyl)methylideneamino]imidazolidine-2,4-dione–2,6-
diacetaminopyridine (1/1)
top
Crystal data top
C8H6N4O5·C9H11N3O2 | F(000) = 896 |
Mr = 431.38 | Dx = 1.490 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 9.8407 (6) Å | Cell parameters from 18548 reflections |
b = 17.9443 (10) Å | θ = 3.5–25.8° |
c = 10.9902 (6) Å | µ = 0.12 mm−1 |
β = 97.839 (5)° | T = 173 K |
V = 1922.56 (19) Å3 | Block, colourless |
Z = 4 | 0.50 × 0.50 × 0.40 mm |
Data collection top
Stoe IPDS II two-circle diffractometer | 2802 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.138 |
Graphite monochromator | θmax = 25.6°, θmin = 3.5° |
ω scans | h = −11→11 |
32493 measured reflections | k = −21→21 |
3619 independent reflections | l = −12→13 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.122 | w = 1/[σ2(Fo2) + (0.0793P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.00 | (Δ/σ)max = 0.004 |
3619 reflections | Δρmax = 0.24 e Å−3 |
295 parameters | Δρmin = −0.25 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.018 (3) |
Crystal data top
C8H6N4O5·C9H11N3O2 | V = 1922.56 (19) Å3 |
Mr = 431.38 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.8407 (6) Å | µ = 0.12 mm−1 |
b = 17.9443 (10) Å | T = 173 K |
c = 10.9902 (6) Å | 0.50 × 0.50 × 0.40 mm |
β = 97.839 (5)° | |
Data collection top
Stoe IPDS II two-circle diffractometer | 2802 reflections with I > 2σ(I) |
32493 measured reflections | Rint = 0.138 |
3619 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.122 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.24 e Å−3 |
3619 reflections | Δρmin = −0.25 e Å−3 |
295 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.52583 (13) | 0.64458 (7) | 0.64174 (13) | 0.0296 (3) | |
C2 | 0.42350 (17) | 0.68120 (9) | 0.68671 (16) | 0.0301 (4) | |
C3 | 0.41884 (18) | 0.75887 (9) | 0.69434 (17) | 0.0349 (4) | |
H3 | 0.3473 | 0.7835 | 0.7284 | 0.042* | |
C4 | 0.52252 (18) | 0.79852 (10) | 0.65029 (17) | 0.0384 (4) | |
H4 | 0.5217 | 0.8514 | 0.6537 | 0.046* | |
C5 | 0.62753 (18) | 0.76271 (9) | 0.60124 (17) | 0.0357 (4) | |
H5 | 0.6973 | 0.7900 | 0.5691 | 0.043* | |
C6 | 0.62646 (16) | 0.68500 (9) | 0.60097 (16) | 0.0298 (4) | |
N21 | 0.32474 (15) | 0.63422 (8) | 0.72663 (15) | 0.0356 (4) | |
H21 | 0.337 (2) | 0.5827 (12) | 0.7193 (18) | 0.043 (5)* | |
C22 | 0.20514 (18) | 0.65339 (10) | 0.77066 (19) | 0.0397 (4) | |
C23 | 0.11866 (19) | 0.58871 (11) | 0.8009 (2) | 0.0494 (5) | |
H23A | 0.0935 | 0.5954 | 0.8835 | 0.074* | |
H23B | 0.1708 | 0.5424 | 0.7980 | 0.074* | |
H23C | 0.0353 | 0.5863 | 0.7410 | 0.074* | |
O24 | 0.17032 (16) | 0.71770 (8) | 0.78528 (18) | 0.0658 (5) | |
N61 | 0.72765 (14) | 0.64156 (8) | 0.55533 (14) | 0.0332 (3) | |
H61 | 0.713 (2) | 0.5936 (13) | 0.548 (2) | 0.050 (6)* | |
C62 | 0.85420 (17) | 0.66453 (10) | 0.52916 (18) | 0.0380 (4) | |
C63 | 0.9342 (2) | 0.60583 (11) | 0.4720 (2) | 0.0475 (5) | |
H63A | 0.8942 | 0.5984 | 0.3862 | 0.071* | |
H63B | 0.9306 | 0.5589 | 0.5171 | 0.071* | |
H63C | 1.0298 | 0.6219 | 0.4754 | 0.071* | |
O64 | 0.89694 (15) | 0.72777 (8) | 0.55051 (17) | 0.0608 (5) | |
N1' | 0.54265 (14) | 0.48520 (8) | 0.65571 (14) | 0.0328 (4) | |
H1' | 0.537 (2) | 0.5339 (13) | 0.6433 (19) | 0.050 (6)* | |
C2' | 0.64290 (17) | 0.44362 (8) | 0.60760 (16) | 0.0308 (4) | |
O21' | 0.72697 (12) | 0.46849 (6) | 0.54699 (12) | 0.0386 (3) | |
N3' | 0.62300 (14) | 0.37095 (7) | 0.64226 (14) | 0.0311 (3) | |
C4' | 0.50642 (16) | 0.36282 (8) | 0.71095 (16) | 0.0293 (4) | |
H4'1 | 0.5354 | 0.3428 | 0.7944 | 0.035* | |
H4'2 | 0.4346 | 0.3302 | 0.6673 | 0.035* | |
C5' | 0.45734 (17) | 0.44286 (9) | 0.71532 (16) | 0.0315 (4) | |
O51' | 0.35997 (13) | 0.46560 (7) | 0.76174 (13) | 0.0412 (3) | |
N6' | 0.70088 (14) | 0.31481 (7) | 0.60336 (13) | 0.0296 (3) | |
C7' | 0.66610 (16) | 0.24868 (9) | 0.63244 (16) | 0.0295 (4) | |
H7' | 0.5906 | 0.2411 | 0.6764 | 0.035* | |
C8' | 0.74453 (16) | 0.18599 (8) | 0.59668 (16) | 0.0290 (4) | |
O9' | 0.69141 (11) | 0.11784 (6) | 0.62218 (11) | 0.0326 (3) | |
C10' | 0.77851 (17) | 0.06735 (8) | 0.58329 (17) | 0.0316 (4) | |
C11' | 0.88363 (18) | 0.09948 (9) | 0.53549 (17) | 0.0331 (4) | |
H11' | 0.9568 | 0.0752 | 0.5034 | 0.040* | |
C12' | 0.86101 (17) | 0.17743 (9) | 0.54369 (17) | 0.0331 (4) | |
H12' | 0.9163 | 0.2160 | 0.5174 | 0.040* | |
N13' | 0.74296 (15) | −0.00858 (8) | 0.59716 (15) | 0.0376 (4) | |
O14' | 0.63803 (15) | −0.02321 (7) | 0.64050 (17) | 0.0651 (5) | |
O15' | 0.82215 (13) | −0.05616 (6) | 0.56451 (13) | 0.0448 (4) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0277 (7) | 0.0235 (6) | 0.0391 (8) | 0.0008 (5) | 0.0095 (6) | 0.0014 (6) |
C2 | 0.0302 (8) | 0.0246 (8) | 0.0364 (9) | 0.0012 (6) | 0.0079 (7) | −0.0019 (7) |
C3 | 0.0361 (9) | 0.0248 (8) | 0.0445 (11) | 0.0038 (7) | 0.0085 (8) | −0.0033 (7) |
C4 | 0.0447 (10) | 0.0221 (8) | 0.0481 (11) | 0.0001 (7) | 0.0052 (9) | 0.0001 (7) |
C5 | 0.0358 (9) | 0.0261 (8) | 0.0458 (11) | −0.0039 (7) | 0.0075 (8) | 0.0036 (7) |
C6 | 0.0272 (8) | 0.0263 (8) | 0.0365 (9) | −0.0008 (6) | 0.0060 (7) | 0.0015 (7) |
N21 | 0.0309 (7) | 0.0245 (7) | 0.0548 (10) | 0.0031 (6) | 0.0184 (7) | −0.0013 (6) |
C22 | 0.0302 (9) | 0.0384 (10) | 0.0532 (12) | 0.0087 (8) | 0.0158 (8) | 0.0033 (8) |
C23 | 0.0327 (10) | 0.0447 (11) | 0.0751 (15) | 0.0050 (8) | 0.0223 (10) | 0.0066 (10) |
O24 | 0.0575 (9) | 0.0364 (8) | 0.1135 (14) | 0.0176 (7) | 0.0478 (9) | 0.0051 (8) |
N61 | 0.0287 (7) | 0.0260 (7) | 0.0472 (9) | −0.0015 (6) | 0.0137 (6) | 0.0022 (6) |
C62 | 0.0304 (9) | 0.0381 (10) | 0.0475 (11) | −0.0033 (7) | 0.0127 (8) | 0.0065 (8) |
C63 | 0.0370 (10) | 0.0454 (11) | 0.0647 (14) | 0.0015 (8) | 0.0231 (10) | 0.0041 (10) |
O64 | 0.0432 (8) | 0.0428 (8) | 0.1021 (13) | −0.0155 (6) | 0.0313 (8) | −0.0097 (8) |
N1' | 0.0325 (8) | 0.0191 (7) | 0.0503 (10) | 0.0024 (6) | 0.0183 (7) | 0.0038 (6) |
C2' | 0.0305 (8) | 0.0218 (8) | 0.0414 (10) | 0.0004 (7) | 0.0096 (7) | 0.0009 (7) |
O21' | 0.0367 (7) | 0.0256 (6) | 0.0581 (8) | 0.0004 (5) | 0.0230 (6) | 0.0045 (5) |
N3' | 0.0313 (7) | 0.0190 (6) | 0.0462 (9) | 0.0009 (5) | 0.0172 (6) | −0.0001 (6) |
C4' | 0.0284 (8) | 0.0222 (7) | 0.0397 (9) | −0.0006 (6) | 0.0131 (7) | −0.0001 (7) |
C5' | 0.0303 (8) | 0.0267 (8) | 0.0390 (10) | 0.0008 (7) | 0.0106 (7) | 0.0012 (7) |
O51' | 0.0386 (7) | 0.0310 (6) | 0.0588 (9) | 0.0066 (5) | 0.0239 (6) | 0.0047 (6) |
N6' | 0.0290 (7) | 0.0204 (7) | 0.0406 (8) | 0.0031 (5) | 0.0090 (6) | −0.0018 (6) |
C7' | 0.0270 (8) | 0.0225 (8) | 0.0404 (10) | 0.0003 (6) | 0.0096 (7) | −0.0002 (7) |
C8' | 0.0306 (8) | 0.0194 (7) | 0.0377 (9) | −0.0014 (6) | 0.0072 (7) | 0.0018 (7) |
O9' | 0.0287 (6) | 0.0199 (5) | 0.0518 (8) | 0.0018 (4) | 0.0147 (5) | 0.0002 (5) |
C10' | 0.0304 (8) | 0.0217 (8) | 0.0440 (10) | 0.0043 (6) | 0.0096 (7) | −0.0015 (7) |
C11' | 0.0309 (8) | 0.0283 (9) | 0.0423 (10) | 0.0034 (7) | 0.0134 (7) | −0.0013 (7) |
C12' | 0.0319 (9) | 0.0255 (8) | 0.0437 (10) | −0.0002 (6) | 0.0120 (8) | 0.0009 (7) |
N13' | 0.0354 (8) | 0.0217 (7) | 0.0571 (10) | 0.0021 (6) | 0.0108 (7) | −0.0005 (7) |
O14' | 0.0537 (9) | 0.0265 (7) | 0.1245 (15) | −0.0029 (6) | 0.0463 (9) | 0.0034 (8) |
O15' | 0.0446 (7) | 0.0242 (6) | 0.0658 (9) | 0.0096 (5) | 0.0088 (7) | −0.0046 (6) |
Geometric parameters (Å, º) top
N1—C2 | 1.351 (2) | N1'—C5' | 1.364 (2) |
N1—C6 | 1.352 (2) | N1'—C2' | 1.397 (2) |
C2—C3 | 1.397 (2) | N1'—H1' | 0.88 (2) |
C2—N21 | 1.401 (2) | C2'—O21' | 1.216 (2) |
C3—C4 | 1.384 (3) | C2'—N3' | 1.380 (2) |
C3—H3 | 0.9500 | N3'—N6' | 1.3691 (19) |
C4—C5 | 1.387 (3) | N3'—C4' | 1.464 (2) |
C4—H4 | 0.9500 | C4'—C5' | 1.518 (2) |
C5—C6 | 1.395 (2) | C4'—H4'1 | 0.9900 |
C5—H5 | 0.9500 | C4'—H4'2 | 0.9900 |
C6—N61 | 1.410 (2) | C5'—O51' | 1.216 (2) |
N21—C22 | 1.376 (2) | N6'—C7' | 1.287 (2) |
N21—H21 | 0.94 (2) | C7'—C8' | 1.449 (2) |
C22—O24 | 1.221 (2) | C7'—H7' | 0.9500 |
C22—C23 | 1.503 (3) | C8'—C12' | 1.363 (2) |
C23—H23A | 0.9800 | C8'—O9' | 1.3739 (19) |
C23—H23B | 0.9800 | O9'—C10' | 1.3557 (19) |
C23—H23C | 0.9800 | C10'—C11' | 1.352 (2) |
N61—C62 | 1.379 (2) | C10'—N13' | 1.420 (2) |
N61—H61 | 0.88 (2) | C11'—C12' | 1.421 (2) |
C62—O64 | 1.222 (2) | C11'—H11' | 0.9500 |
C62—C63 | 1.503 (3) | C12'—H12' | 0.9500 |
C63—H63A | 0.9800 | N13'—O14' | 1.223 (2) |
C63—H63B | 0.9800 | N13'—O15' | 1.2415 (18) |
C63—H63C | 0.9800 | | |
| | | |
C2—N1—C6 | 118.44 (14) | H63B—C63—H63C | 109.5 |
N1—C2—C3 | 122.63 (15) | C5'—N1'—C2' | 113.39 (13) |
N1—C2—N21 | 113.91 (14) | C5'—N1'—H1' | 126.7 (14) |
C3—C2—N21 | 123.45 (15) | C2'—N1'—H1' | 119.9 (14) |
C4—C3—C2 | 117.38 (16) | O21'—C2'—N3' | 129.12 (15) |
C4—C3—H3 | 121.3 | O21'—C2'—N1' | 125.44 (14) |
C2—C3—H3 | 121.3 | N3'—C2'—N1' | 105.43 (14) |
C3—C4—C5 | 121.43 (16) | N6'—N3'—C2' | 120.18 (13) |
C3—C4—H4 | 119.3 | N6'—N3'—C4' | 126.80 (12) |
C5—C4—H4 | 119.3 | C2'—N3'—C4' | 112.77 (13) |
C4—C5—C6 | 117.28 (16) | N3'—C4'—C5' | 101.37 (12) |
C4—C5—H5 | 121.4 | N3'—C4'—H4'1 | 111.5 |
C6—C5—H5 | 121.4 | C5'—C4'—H4'1 | 111.5 |
N1—C6—C5 | 122.78 (15) | N3'—C4'—H4'2 | 111.5 |
N1—C6—N61 | 113.96 (14) | C5'—C4'—H4'2 | 111.5 |
C5—C6—N61 | 123.24 (15) | H4'1—C4'—H4'2 | 109.3 |
C22—N21—C2 | 128.52 (15) | O51'—C5'—N1' | 125.91 (15) |
C22—N21—H21 | 113.8 (12) | O51'—C5'—C4' | 127.09 (15) |
C2—N21—H21 | 117.6 (12) | N1'—C5'—C4' | 107.00 (13) |
O24—C22—N21 | 123.48 (17) | C7'—N6'—N3' | 114.94 (14) |
O24—C22—C23 | 121.56 (16) | N6'—C7'—C8' | 118.61 (14) |
N21—C22—C23 | 114.97 (16) | N6'—C7'—H7' | 120.7 |
C22—C23—H23A | 109.5 | C8'—C7'—H7' | 120.7 |
C22—C23—H23B | 109.5 | C12'—C8'—O9' | 110.63 (13) |
H23A—C23—H23B | 109.5 | C12'—C8'—C7' | 135.52 (14) |
C22—C23—H23C | 109.5 | O9'—C8'—C7' | 113.84 (13) |
H23A—C23—H23C | 109.5 | C10'—O9'—C8' | 104.83 (12) |
H23B—C23—H23C | 109.5 | C11'—C10'—O9' | 112.82 (14) |
C62—N61—C6 | 127.66 (15) | C11'—C10'—N13' | 131.59 (15) |
C62—N61—H61 | 114.7 (15) | O9'—C10'—N13' | 115.58 (14) |
C6—N61—H61 | 117.4 (15) | C10'—C11'—C12' | 105.09 (15) |
O64—C62—N61 | 122.31 (17) | C10'—C11'—H11' | 127.5 |
O64—C62—C63 | 123.03 (16) | C12'—C11'—H11' | 127.5 |
N61—C62—C63 | 114.65 (16) | C8'—C12'—C11' | 106.63 (14) |
C62—C63—H63A | 109.5 | C8'—C12'—H12' | 126.7 |
C62—C63—H63B | 109.5 | C11'—C12'—H12' | 126.7 |
H63A—C63—H63B | 109.5 | O14'—N13'—O15' | 124.15 (14) |
C62—C63—H63C | 109.5 | O14'—N13'—C10' | 118.76 (14) |
H63A—C63—H63C | 109.5 | O15'—N13'—C10' | 117.09 (15) |
| | | |
C6—N1—C2—C3 | −1.0 (2) | N6'—N3'—C4'—C5' | −175.01 (15) |
C6—N1—C2—N21 | −179.90 (14) | C2'—N3'—C4'—C5' | −0.76 (19) |
N1—C2—C3—C4 | 1.8 (3) | C2'—N1'—C5'—O51' | −177.74 (17) |
N21—C2—C3—C4 | −179.38 (16) | C2'—N1'—C5'—C4' | 1.6 (2) |
C2—C3—C4—C5 | −0.4 (3) | N3'—C4'—C5'—O51' | 178.85 (18) |
C3—C4—C5—C6 | −1.6 (3) | N3'—C4'—C5'—N1' | −0.51 (18) |
C2—N1—C6—C5 | −1.3 (2) | C2'—N3'—N6'—C7' | −174.43 (16) |
C2—N1—C6—N61 | −179.64 (14) | C4'—N3'—N6'—C7' | −0.6 (2) |
C4—C5—C6—N1 | 2.5 (3) | N3'—N6'—C7'—C8' | −178.99 (14) |
C4—C5—C6—N61 | −179.23 (16) | N6'—C7'—C8'—C12' | 6.2 (3) |
N1—C2—N21—C22 | −176.25 (17) | N6'—C7'—C8'—O9' | −174.36 (15) |
C3—C2—N21—C22 | 4.8 (3) | C12'—C8'—O9'—C10' | −0.03 (19) |
C2—N21—C22—O24 | −2.8 (3) | C7'—C8'—O9'—C10' | −179.58 (14) |
C2—N21—C22—C23 | 177.57 (18) | C8'—O9'—C10'—C11' | 0.3 (2) |
N1—C6—N61—C62 | −166.82 (16) | C8'—O9'—C10'—N13' | −178.46 (15) |
C5—C6—N61—C62 | 14.8 (3) | O9'—C10'—C11'—C12' | −0.5 (2) |
C6—N61—C62—O64 | 4.3 (3) | N13'—C10'—C11'—C12' | 178.06 (19) |
C6—N61—C62—C63 | −175.34 (17) | O9'—C8'—C12'—C11' | −0.3 (2) |
C5'—N1'—C2'—O21' | 177.07 (17) | C7'—C8'—C12'—C11' | 179.15 (19) |
C5'—N1'—C2'—N3' | −2.1 (2) | C10'—C11'—C12'—C8' | 0.4 (2) |
O21'—C2'—N3'—N6' | −2.7 (3) | C11'—C10'—N13'—O14' | −177.6 (2) |
N1'—C2'—N3'—N6' | 176.37 (14) | O9'—C10'—N13'—O14' | 1.0 (3) |
O21'—C2'—N3'—C4' | −177.41 (18) | C11'—C10'—N13'—O15' | 2.8 (3) |
N1'—C2'—N3'—C4' | 1.70 (19) | O9'—C10'—N13'—O15' | −178.68 (15) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···O51′ | 0.94 (2) | 2.16 (2) | 3.0640 (19) | 162.4 (17) |
N61—H61···O21′ | 0.88 (2) | 2.25 (2) | 3.1069 (19) | 167 (2) |
N1′—H1′···N1 | 0.88 (2) | 1.99 (2) | 2.868 (2) | 171.6 (19) |
C7′—H7′···O24i | 0.95 | 2.69 | 3.592 (2) | 159 |
Symmetry code: (i) −x+1/2, y−1/2, −z+3/2. |
Experimental details
| (Ia) | (Ib) | (Ic) | (Id) |
Crystal data |
Chemical formula | C8H6N4O5·C2H6OS | C8H6N4O5·0.5(C2H6OS) | C8H6N4O5·C4H9NO | C8H6N4O5·C4H9NO |
Mr | 316.30 | ? | 325.29 | 325.29 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, C2/c | Triclinic, P1 | Monoclinic, P21/c |
Temperature (K) | 173 | 173 | 173 | 173 |
a, b, c (Å) | 6.6257 (4), 26.488 (2), 8.0032 (5) | 16.1710 (11), 13.7985 (8), 10.3465 (8) | 6.6544 (5), 7.9842 (6), 14.3515 (11) | 16.2038 (16), 7.4215 (5), 13.1195 (12) |
α, β, γ (°) | 90, 100.347 (5), 90 | 90, 102.358 (6), 90 | 100.021 (6), 93.566 (6), 99.274 (6) | 90, 111.681 (7), 90 |
V (Å3) | 1381.73 (16) | 2255.2 (3) | 737.85 (10) | 1466.1 (2) |
Z | 4 | 8 | 2 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.27 | 0.22 | 0.12 | 0.12 |
Crystal size (mm) | 0.40 × 0.20 × 0.20 | 0.50 × 0.40 × 0.20 | 0.30 × 0.30 × 0.20 | 0.30 × 0.20 × 0.20 |
|
Data collection |
Diffractometer | Stoe IPDS II two-circle diffractometer | Stoe IPDS II two-circle diffractometer | Stoe IPDS II two-circle diffractometer | Stoe IPDS II two-circle diffractometer |
Absorption correction | Multi-scan (MULABS; Spek, 2009; Blessing, 1995) | Multi-scan (MULABS; Spek, 2009; Blessing, 1995) | – | – |
Tmin, Tmax | 0.900, 0.948 | 0.896, 0.957 | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15878, 2437, 1588 | 13781, 2116, 1806 | 24053, 2770, 2111 | 17332, 2743, 1584 |
Rint | 0.176 | 0.098 | 0.062 | 0.147 |
(sin θ/λ)max (Å−1) | 0.595 | 0.609 | 0.608 | 0.609 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.110, 0.89 | 0.039, 0.100, 1.09 | 0.038, 0.100, 0.97 | 0.050, 0.106, 0.85 |
No. of reflections | 2437 | 2116 | 2770 | 2743 |
No. of parameters | 196 | 181 | 232 | 231 |
No. of restraints | 0 | 0 | 0 | 0 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.28, −0.53 | 0.28, −0.32 | 0.28, −0.16 | 0.20, −0.26 |
| (Ie) | (II) | (I.II) |
Crystal data |
Chemical formula | C8H6N4O5·2C4H9NO | C9H11N3O2·C3H7NO | C8H6N4O5·C9H11N3O2 |
Mr | 412.41 | 266.30 | 431.38 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, P21/c | Monoclinic, P21/n |
Temperature (K) | 173 | 173 | 173 |
a, b, c (Å) | 20.874 (2), 11.5433 (9), 8.7162 (9) | 11.3031 (7), 13.1539 (8), 9.3959 (5) | 9.8407 (6), 17.9443 (10), 10.9902 (6) |
α, β, γ (°) | 90, 100.708 (9), 90 | 90, 94.327 (5), 90 | 90, 97.839 (5), 90 |
V (Å3) | 2063.6 (3) | 1393.00 (14) | 1922.56 (19) |
Z | 4 | 4 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.11 | 0.09 | 0.12 |
Crystal size (mm) | 0.60 × 0.60 × 0.20 | 0.50 × 0.40 × 0.40 | 0.50 × 0.50 × 0.40 |
|
Data collection |
Diffractometer | Stoe IPDS II two-circle diffractometer | Stoe IPDS II two-circle diffractometer | Stoe IPDS II two-circle diffractometer |
Absorption correction | – | – | – |
Tmin, Tmax | – | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9751, 3844, 2943 | 12406, 2603, 1967 | 32493, 3619, 2802 |
Rint | 0.078 | 0.100 | 0.138 |
(sin θ/λ)max (Å−1) | 0.609 | 0.609 | 0.609 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.126, 0.97 | 0.042, 0.099, 0.93 | 0.044, 0.122, 1.00 |
No. of reflections | 3844 | 2603 | 3619 |
No. of parameters | 285 | 187 | 295 |
No. of restraints | 22 | 0 | 0 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.26, −0.24 | 0.24, −0.19 | 0.24, −0.25 |
Hydrogen-bond geometry (Å, º) for (Ia) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1A | 0.89 (4) | 1.86 (4) | 2.733 (4) | 167 (3) |
C7—H7···O21i | 0.95 | 2.24 | 3.065 (4) | 145.0 |
Symmetry code: (i) x−1, y, z. |
Hydrogen-bond geometry (Å, º) for (Ib) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1A | 0.85 (3) | 1.94 (3) | 2.7841 (16) | 171 (2) |
C7—H7···O51i | 0.95 | 2.49 | 3.235 (2) | 135.6 |
Symmetry code: (i) x, −y+1, z+1/2. |
Hydrogen-bond geometry (Å, º) for (Ic) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1A | 0.94 (3) | 1.82 (3) | 2.7533 (19) | 169 (2) |
C7—H7···O21i | 0.95 | 2.34 | 3.123 (2) | 139.4 |
Symmetry code: (i) x+1, y, z. |
Hydrogen-bond geometry (Å, º) for (Id) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1A | 0.86 (3) | 1.88 (3) | 2.736 (3) | 172 (3) |
C7—H7···O51i | 0.95 | 2.45 | 3.137 (3) | 129.3 |
Symmetry code: (i) −x+1, y−1/2, −z+1/2. |
Hydrogen-bond geometry (Å, º) for (Ie) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1B | 0.95 (3) | 1.81 (3) | 2.7463 (19) | 169 (3) |
C7—H7···O1A | 0.95 | 2.30 | 3.175 (2) | 152.4 |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···O1A | 0.91 (2) | 2.00 (2) | 2.8979 (18) | 168.8 (17) |
N61—H61···O64i | 0.87 (2) | 2.01 (2) | 2.8757 (16) | 177.4 (18) |
Symmetry code: (i) x, −y+1/2, z−1/2. |
Hydrogen-bond geometry (Å, º) for (I.II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···O51' | 0.94 (2) | 2.16 (2) | 3.0640 (19) | 162.4 (17) |
N61—H61···O21' | 0.88 (2) | 2.25 (2) | 3.1069 (19) | 167 (2) |
N1'—H1'···N1 | 0.88 (2) | 1.99 (2) | 2.868 (2) | 171.6 (19) |
C7'—H7'···O24i | 0.95 | 2.69 | 3.592 (2) | 158.6 |
Symmetry code: (i) −x+1/2, y−1/2, −z+3/2. |
Cocrystallization of nitrofurantoin and 1-(4-fluorophenyl)biguanide
hydrochloride topCrystal | Nitrofurantoin (mg) | 1-(4-Fluorophenyl)biguanide hydrochloride (mg) | Solvent | Temperature |
(Ia) | 2.4 | 1.9 | DMSO (100 µl) | 277 K |
(Ic) | 1.4 | 1.6 | DMAC (100 µl) | room temperature |
(Id) | 2.2 | 2.4 | DMAC (100 µl) | 277 K |
Cocrystallization of nitrofurantoin and 2,6-diacetaminopyridine topCrystal | Nitrofurantoin (mg) | 2,6-Diacetaminopyridine (mg) | Solvent | Temperature |
(Ib) | 2.6 | 2.2 | DMSO (150 µl) | room temperature |
(Ie) | 2.9 | 3.4 | DMAC (100 µl) | 277 K |
(I.II) | 2.8 | 3.7 | DMAC (100 µl) | 323 K |
Selected geometric parameters (°) of nitrofurantoin. The dihedral angle between
the furan and the imidazolidinedione ring is designated by α. topCrystal | N3—N6—C7—C8 | N6—C7—C8—O9 | O9—C10—N13—O14 | α [°] |
(Ia) | 179.7 (3) | 1.8 (5) | -5.0 (5) | 8.5 (7) |
(Ib) | -179.4 (1) | 175.2 (1) | -2.9 (2) | 5.9 (1) |
(Ic) | 179.0 (1) | 5.3 (2) | -6.2 (2) | 12.4 (1) |
(Id) | 178.3 (2) | 2.8 (4) | 3.4 (4) | 8.8 (1) |
(Ie) | -179.3 (1) | 4.1 (2) | -1.0 (2) | 6.4 (1) |
(I.II) | -179.0 (1) | -174.4 (2) | 1.0 (3) | 9.0 (1) |
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Nitrofurantoin is an antibacterial drug used for the treatment of urinary tract infections. It is reduced by bacterial flavoproteins to reactive intermediates, which inhibit the processes of protein synthesis, aerobic energy metabolism as well as DNA, RNA and cell wall synthesis (Cadwallader & Jun, 1976). The resistance of E. coli to other antibiotics has led to an increased interest in this drug in spite of its severe side effects (Cunha, 2006). In many countries, it is illegally applied as an animal food additive, which can further be passed to humans through the food chain and cause plenty of diseases. Since the present quantification of nitrofurantoin is time-consuming and costly, diaminopyridine derivatives are developed as artificial receptors for its recognition. The drug–receptor complex is characterized by one N—H···N and two N—H···O hydrogen bonds and has been examined by NMR spectroscopy (Athikomrattanakul et al., 2009).
A study of the Cambridge Structural Database (CSD, Version 5.31 of November 2009, plus three updates; Allen, 2002) revealed that similar hydrogen-bond patterns are observed in cocrystals of 2,6-diaminopyridine derivatives and six-membered ring compounds with complementary functional groups [CSD refcodes: DOPCUG (Feibush et al., 1986), FODTIB (Hamilton & Van Engen, 1987), MAWPUW (Li et al., 2005), VABVID and VABVOJ (Muehldorf et al., 1988), XESSAQ (Spange et al., 2006)]. Since no such cocrystal with five-membered ring compounds has been reported, we cocrystallized nitrofurantoin and 2,6-diacetaminopyridine. In addition to the desired cocrystal, (I.II), five pseudopolymorphs of nitrofurantoin crystallized during the various cocrystallization experiments: a dimethyl sulfoxide solvate, (Ia), a dimethyl sulfoxide hemisolvate, (Ib), two dimethylacetamide solvates, (Ic) and (Id), and a dimethylacetamide disolvate, (Ie). Furthermore, a 2,6-diacetaminopyridine dimethylformamide solvate, (II), was obtained.
Compounds (Ia) and (Ib) formed during cocrystallization attempts from dimethyl sulfoxide (DMSO). (Ia) crystallized in the monoclinic space group P21/c with one nitrofurantoin and one DMSO molecule in the asymmetric unit. Both molecules are linked by an N—H···O hydrogen bond (Fig. 1). C—H···O interactions between nitrofurantoin molecules lead to ribbons running along the a axis, which are further stabilized by van der Waals interactions to a herringbone pattern (Fig. 2). Compound (Ib) crystallized in the monoclinic space group C2/c as a hemisolvate. The DMSO molecule lies on a twofold axis with the S atom disordered over two positions (Fig. 3). The packing of (Ib) shows zigzag chains of C—H···O-bonded nitrofurantoin molecules running along the a axis (Fig. 4).
Crystallization attempts from dimethylacetamide (DMAC) yielded another three nitrofurantoin solvates, (Ic), (Id) and (Ie). (Ic) and (Id) crystallized with one nitrofurantoin and one DMAC molecule in the asymmetric unit (Figs. 5 and 6). In both structures, the DMAC molecule is disordered over two sites with all non-hydrogen atoms of these two sites in a common plane (r.m.s. deviation = 0.024 Å). (Ic) crystallized in the triclinic space group P1, (Id) in the monoclinic space group P21/c. A similar hydrogen-bond pattern is observed: the nitrofurantoin molecules are linked to each other by C—H···O and to the solvent molecules by N—H···O interactions. However, the packing motifs of the two polymorphs are quite different. Nitrofurantoin and solvent molecules form ribbons parallel to the (0 2 3) plane in (Ic) and zigzag chains running along the b axis in (Id) (Figs. 7 and 8). In structure (Ie), which crystallized in the monoclinic space group P21/c, there are two independent solvent molecules (Fig. 9). Again, each DMAC molecule is disordered over two sites with a planar arrangement of all non-hydrogen atoms (r.m.s. deviation = 0.024 and 0.038 Å, respectively). The nitrofurantoin molecules are linked to one of these by an N—H···O and to the other one by a C—H···O hydrogen bond. The packing shows layers parallel to the (5 0 2) plane (Fig. 10).
In the five pseudopolymorphs, (Ia)–(Ie), the configuration of nitrofurantoin with respect to the C7═N6 double bond is E with C7–H pointing towards the methylene group of the imidazolidinedione ring. The dihedral angle between the planes through the two rings varies from 5.9 (1) to 12.4 (1)°. Since also the nitro group is rotated by less than 10° with respect to the furan ring, the molecules are almost planar (Table 10). Due to the rotatable C7—C8 bond, nitrofurantoin can adopt two forms: an antiperiplanar conformation between N6 and the furan O9 atom [as in (Ib)] and a synperiplanar conformation (observed in the other four pseudopolymorphs). According to an ab initio energy calculation with geometry optimization [program Gaussian; basis set: RHF/6–31+G(d); Frisch et al., 2004], the synperiplanar conformation is by 11.8 kJ mol-1 less stable than the antiperiplanar one. Since high-energy conformers are rarely observed in crystal structures (Weng et al., 2008), we examined all five entries of nitrofurantoin in the CSD [refcodes: HAXBUD, HAXBUD01 (Pienaar et al., 1993a), LABJON (Bertolasi et al., 1993), LABJON01 and LABJON02 (Pienaar et al., 1993b)], which confirmed that apparently the higher-energy conformer is preferred in the solid state. A detailed analysis with our force-field program MOMO (Wagner et al., 2009), which also clearly favoured the antiperiplanar conformation, yielded that the energy difference is caused by electrostatic interactions. A closer examination of the molecular charge distribution calculated by Gaussian shows that the positive and negative charges are equally distributed in the antiperiplanar conformation, while in the synperiplanar one the molecule has positive and negative sides (Fig. 11). This may promote a more compact crystal packing, which would explain why the less stable conformer is favoured in the solid phase.
During the preparation of the nitrofurantoin receptor 2,6-diacetaminopyridine it crystallized as a dimethylformamide (DMF) solvate, (II), in the monoclinic space group P21/c. Both methyl groups of the 2,6-diacetaminopyridine molecule show rotational disorder and are antiperiplanar to the pyridine ring atoms. Thus the two N—H bonds are directed to the same side as the pyridine N atom (Fig. 12). The 2,6-diacetaminopyridine and the DMF molecule are connected by an N—H···O hydrogen bond from one amide group. These entities form zigzag chains along the c axis stabilized by further N—H···O bonds between the other amide groups (Fig. 13). Similar conformations are observed in the crystal structures of solvent-free 2,6-diacetaminopyridine [refcodes: DOPDAN (Feibush et al., 1986) and DOPDAN01 (Mahapatra et al., 2009)].
The desired complex (I.II) crystallized in the monoclinic space group P21/n, with nitrofurantoin and 2,6-diacetaminopyridine connected by one N—H···N and two N—H···O bonds (Fig. 14). As in (Ib), the nitrofurantoin molecule adopts the antiperiplanar conformation as well as the usual E configuration of the C═N double bond. The nitro group and the furan ring are coplanar and the planes through the furan and the imidazolidinedione moiety form a dihedral angle of 9.0 (1)°. Similar to (II), the carbonyl O atoms of the 2,6-diacetaminopyridine molecule point away from the pyridine N atom. One of the amide groups is coplanar with the pyridine ring, while the other one encloses a dihedral angle of 16.7 (1)° with it. The crystal packing shows layers parallel to the (1 0 3) plane, which are stabilized by C—H···O interactions between both components (Fig. 15).
Nitrofurantoin forms an N—H···O and a C—H···O hydrogen bond in all (pseudo)polymorphs. Interestingly, the N—H···O bond connects two nitrofurantoin molecules only in the solvent-free forms (LABJON, LABJON01 and LABJON02); in the solvates [(Ia)–(Ie), HAXBUD, HAXBUD01], it is formed to the solvent molecule. The C—H···O interaction (always with participation of the C—H bond of the hydrazone moiety N—N═C—H) usually connects two nitrofurantoin molecules and thus plays a significant role for the crystal packing, also for that of the complex (I.II). Even though its molecular structure in solvent-free forms and the dimethylformamide solvate (II) is very similar, 2,6-diacetaminopyridine shows some conformational flexibility. The dihedral angle between the planes through the amide groups and the pyridine ring varies from 2.8 to 33.4° depending on the hydrogen-bond interactions. In the cocrystal (I.II), the hydrogen-bonded complexes are further linked by C—H···O interactions to the amide. As a result of that, the 2,6-diacetaminopyridine molecule is not planar. Altogether, since no crystal structure of a complex between nitrofurantoin and a 2,6-diaminopyridine derivative has yet been published, the cocrystal (I.II) confirms the NMR study (Athikomrattanakul et al., 2009) of this drug–receptor complex.