Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229614005567/eg3150sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2053229614005567/eg3150Isup2.hkl | |
Text file https://doi.org/10.1107/S2053229614005567/eg3150Isup3.txt |
CCDC reference: 991221
The sequence Aib-Aib-Aib-Ala represents a segment of the naturally occurring peptaibol antibiotics, which are peptides containing α-aminoisobutyric acid (Aib) and a C-terminal β-amino alcohol (Brückner & Graf, 1983; Benedetti et al., 1982) such as trichotoxin (Brückner et al., 1985). We present here the crystal structure of Z-Aib-Aib-Aib-L-Ala-OtBu, (II), containing this tetrapeptide.
For the synthesis of Z-Aib-Aib-Aib-Ala-OtBu, the protected tripeptide acid Z-Aib-Aib-Aib-OH was reacted with acetic anhydride to provide the oxazolone Z-Aib-Aib-AibOx, (I) (AibOx is the oxazolone of C-terminal Aib; Leplawy et al. 1960; Brückner & Jung, 1982; Toniolo et al., 1983). To a solution of (I) (6.51 mmol) in propionitrile (30 ml), L-Ala-OtBu.HCl (7.81 mmol, 1.20 equivalents) and N-methylmorpholine (0.87 ml, 1.20 equivalents) were added and the mixture was heated for 17 h at 373 K. This was followed by evaporation to dryness in vacuo using a rotary evaporator. To the remaining residue, n-butanol–ethyl acetate (1:1 v/v, 750 ml) was added, and the organic phase was washed successively with 5% aqueous KHSO4, 5% aqueous NaHCO3 and water. On evaporation of the organic phase, the protected tetrapeptide Z-Aib3-L-Ala-OtBu, (II), started to crystallize. Crystallization was completed by addition of ethyl acetate and petroleum ether (b.p. 313–333 K; [Ratio or volumes?]), providing white needles (yield 2.01 g, 57.8%), uniform in thin-layer chromatography. A further quantity of (II) could be obtained from the mother liquor. Crystals suitable for X-ray crystallography were obtained from cooling a hot methanol–water mixture (70:30 v/v). Block-shaped crystals of (II) were observed after a few days at room temperature.
Crystal data, data collection and structure refinement details are summarized in Table 1. In view of the crystal size, a spherical absorption correction was applied in addition to the correction based on symmetry-related measurements (Bruker, 2008). The four N-bound H atoms were located in a difference Fourier synthesis. Their positional parameters were refined with distance restraints and their isotropic displacement parameters were refined freely, except that of the N2—H02 group which was fixed at 1.2Ueq(N). C-bound H atoms were calculated with C—H = 0.93 (aryl), 0.96 (methyl), 0.97 (methylene) and 0.98 Å (methine H atoms), and refined as riding, with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) otherwise.
The backbone of the tetrapeptide of (II) adopts a quite unusual conformation, namely an incipient left-handed 310-helix with a reversal of the helical sense in the Ala residue (Fig. 1 and Table 2). The helix is stabilized by two 4→1 hydrogen bonds (Table 3). All residues, including the N-terminal protecting group, are involved in intramolecular hydrogen bonding.
The peptide adopts the expected trans-planar conformation with significant deviations from planarity (ω = 180°; Table 2). The valence geometry around the Cα atom is asymmetric for the Aib residues (Table 4). If one designates as CL and CR the atoms which occupy the same position as Cβ and the α-hydrogen in the L-amino acids, respectively, the bond angles N—Cα—CL and C—Cα—CL are significantly greater than N—Cα—CR and C—Cα—CR. This observation is in excellent agreement with theoretical calculations and with the bond angles of other left-handed 310-helical Aib peptides (Gessmann et al., 1997).
In the crystal structure, one molecule of (II) is hydrogen-bonded in a head-to-tail manner to a symmetry-related molecule via two hydrogen bonds (Table 3 and Fig. 2), thus building infinite columns in the [001] direction. These columns pack parallel to the same columns translated in the [100] direction along the small a axis in the next unit cell, and these hydrogen-bonded columns pack in an antiparallel manner to the space group symmetry-related columns in the [010] direction. The only polar group not involved in hydrogen bonding is the C═O group of Aib2, with a closest apolar contact of 3.44 Å to a C atom of the benzyloxycarbonyl protecting group.
The structure of the related peptide Z-Aib-Aib-Aib-L-Val-OtBu has been solved previously (Gessmann et al., 1997). The overall folding of the two molecules in the asymmetric unit is essentially the same as for the structure described herein, with an incipient left-handed 310-helix with reversal of the helical sense in the last residue. The r.m.s. deviation of the backbone and the common side-chain atoms in residues 1 to 4 of molecule A of the Val-substituted tetrapeptide and (II) is 0.69 Å, while the corresponding value for molecule B and (II) is 0.42 Å.
For related literature, see: Benedetti et al. (1982); Brückner & Graf (1983); Brückner & Jung (1982); Brückner et al. (1985); Gessmann et al. (1997); Leplawy et al. (1960); Toniolo et al. (1983).
Data collection: PROTEUM2 (Bruker, 2008); cell refinement: SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XTALVIEW (McRee 1999) and SwissPDBViewer (Guex & Peitsch, 1997); software used to prepare material for publication: CHEMDRAW (Mills, 2006) and ORTEP-3 for Windows (Farrugia, 2012).
C27H42N4O7 | Z = 4 |
Mr = 534.65 | F(000) = 1152 |
Orthorhombic, P212121 | Dx = 1.169 Mg m−3 |
Hall symbol: P 2ac 2ab | Cu Kα radiation, λ = 1.54184 Å |
a = 9.3730 (19) Å | µ = 0.69 mm−1 |
b = 17.032 (3) Å | T = 293 K |
c = 19.032 (4) Å | Block, colourless |
V = 3038.3 (11) Å3 | 1.4 × 1.1 × 0.9 mm |
Bruker D8 Venture diffractometer | 5541 independent reflections |
Radiation source: microfocus tube IµS | 5018 reflections with I > 2σ(I) |
Multilayer optics monochromator | Rint = 0.034 |
ω and ψ scans | θmax = 72.4°, θmin = 3.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −11→11 |
Tmin = 0.423, Tmax = 0.754 | k = −20→21 |
5835 measured reflections | l = −22→22 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.044 | w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.142 | (Δ/σ)max = 0.001 |
S = 1.16 | Δρmax = 0.18 e Å−3 |
5541 reflections | Δρmin = −0.23 e Å−3 |
358 parameters | Absolute structure: Flack (1983), with how many Friedel pairs? |
4 restraints | Absolute structure parameter: 0.05 (18) |
Primary atom site location: structure-invariant direct methods |
C27H42N4O7 | V = 3038.3 (11) Å3 |
Mr = 534.65 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 9.3730 (19) Å | µ = 0.69 mm−1 |
b = 17.032 (3) Å | T = 293 K |
c = 19.032 (4) Å | 1.4 × 1.1 × 0.9 mm |
Bruker D8 Venture diffractometer | 5541 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 5018 reflections with I > 2σ(I) |
Tmin = 0.423, Tmax = 0.754 | Rint = 0.034 |
5835 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.142 | Δρmax = 0.18 e Å−3 |
S = 1.16 | Δρmin = −0.23 e Å−3 |
5541 reflections | Absolute structure: Flack (1983), with how many Friedel pairs? |
358 parameters | Absolute structure parameter: 0.05 (18) |
4 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C10 | 0.5062 (4) | 0.31972 (14) | 0.92733 (13) | 0.0807 (8) | |
C20 | 0.4369 (4) | 0.37358 (17) | 0.96801 (16) | 0.0857 (8) | |
H20 | 0.4895 | 0.4042 | 0.9991 | 0.103* | |
C30 | 0.2917 (5) | 0.3838 (2) | 0.9643 (2) | 0.1199 (13) | |
H30 | 0.2469 | 0.4203 | 0.9933 | 0.144* | |
C40 | 0.2136 (6) | 0.3407 (3) | 0.9183 (4) | 0.166 (3) | |
H40 | 0.1154 | 0.3475 | 0.9151 | 0.199* | |
C50 | 0.2831 (9) | 0.2862 (4) | 0.8760 (4) | 0.198 (4) | |
H50 | 0.2300 | 0.2561 | 0.8447 | 0.237* | |
C60 | 0.4284 (6) | 0.2756 (2) | 0.8794 (2) | 0.1279 (17) | |
H60 | 0.4737 | 0.2397 | 0.8501 | 0.153* | |
C70 | 0.6653 (5) | 0.30493 (15) | 0.93185 (17) | 0.0986 (10) | |
H7A0 | 0.6816 | 0.2568 | 0.9579 | 0.118* | |
H7B0 | 0.7027 | 0.2975 | 0.8848 | 0.118* | |
O00 | 0.7426 (2) | 0.36826 (10) | 0.96550 (9) | 0.0749 (5) | |
C80 | 0.7712 (2) | 0.43054 (12) | 0.92446 (10) | 0.0541 (4) | |
O80 | 0.73385 (19) | 0.43571 (8) | 0.86297 (7) | 0.0628 (4) | |
N1 | 0.84362 (18) | 0.48500 (10) | 0.95943 (8) | 0.0531 (4) | |
H01 | 0.869 (3) | 0.4784 (17) | 1.0040 (10) | 0.096 (9)* | |
CA1 | 0.8991 (2) | 0.55453 (12) | 0.92371 (9) | 0.0502 (4) | |
CL1 | 1.0180 (2) | 0.53321 (15) | 0.87215 (12) | 0.0658 (6) | |
HL11 | 0.9815 | 0.4977 | 0.8374 | 0.099* | |
HL21 | 1.0949 | 0.5086 | 0.8971 | 0.099* | |
HL31 | 1.0521 | 0.5800 | 0.8496 | 0.099* | |
CR1 | 0.9568 (3) | 0.61072 (15) | 0.98015 (12) | 0.0701 (6) | |
HR11 | 1.0319 | 0.5853 | 1.0058 | 0.105* | |
HR21 | 0.8812 | 0.6247 | 1.0118 | 0.105* | |
HR31 | 0.9933 | 0.6572 | 0.9581 | 0.105* | |
C1 | 0.77989 (19) | 0.59811 (10) | 0.88472 (9) | 0.0428 (4) | |
O1 | 0.80434 (14) | 0.63206 (8) | 0.82935 (7) | 0.0517 (3) | |
N2 | 0.65117 (16) | 0.59936 (9) | 0.91577 (7) | 0.0444 (3) | |
H02 | 0.643 (3) | 0.5779 (12) | 0.9571 (8) | 0.053* | |
CA2 | 0.5316 (2) | 0.64628 (11) | 0.88785 (10) | 0.0471 (4) | |
CL2 | 0.5637 (3) | 0.73332 (13) | 0.89584 (13) | 0.0681 (6) | |
HL12 | 0.6483 | 0.7461 | 0.8698 | 0.102* | |
HL22 | 0.5782 | 0.7454 | 0.9446 | 0.102* | |
HL32 | 0.4849 | 0.7634 | 0.8782 | 0.102* | |
CR2 | 0.3978 (2) | 0.62341 (14) | 0.92878 (11) | 0.0626 (5) | |
HR12 | 0.3803 | 0.5682 | 0.9232 | 0.094* | |
HR22 | 0.3176 | 0.6525 | 0.9112 | 0.094* | |
HR32 | 0.4113 | 0.6351 | 0.9777 | 0.094* | |
C2 | 0.50370 (19) | 0.62624 (11) | 0.80957 (9) | 0.0481 (4) | |
O2 | 0.4652 (2) | 0.67669 (10) | 0.76925 (8) | 0.0721 (5) | |
N3 | 0.51572 (15) | 0.54954 (9) | 0.79299 (8) | 0.0443 (3) | |
H03 | 0.557 (2) | 0.5194 (11) | 0.8230 (10) | 0.050 (5)* | |
CA3 | 0.47843 (19) | 0.51504 (12) | 0.72466 (9) | 0.0498 (4) | |
CL3 | 0.3308 (2) | 0.54203 (18) | 0.69914 (12) | 0.0726 (7) | |
HL13 | 0.2609 | 0.5309 | 0.7346 | 0.109* | |
HL23 | 0.3066 | 0.5146 | 0.6567 | 0.109* | |
HL33 | 0.3328 | 0.5975 | 0.6902 | 0.109* | |
CR3 | 0.4804 (3) | 0.42615 (14) | 0.73379 (13) | 0.0677 (6) | |
HR13 | 0.5731 | 0.4099 | 0.7495 | 0.102* | |
HR23 | 0.4592 | 0.4014 | 0.6897 | 0.102* | |
HR33 | 0.4101 | 0.4111 | 0.7679 | 0.102* | |
C3 | 0.59109 (19) | 0.53298 (11) | 0.66821 (9) | 0.0489 (4) | |
O3 | 0.56553 (18) | 0.51739 (14) | 0.60668 (8) | 0.0823 (6) | |
N4 | 0.71787 (15) | 0.55887 (9) | 0.68888 (7) | 0.0441 (3) | |
H04 | 0.741 (3) | 0.5730 (14) | 0.7301 (9) | 0.059 (6)* | |
CA4 | 0.83797 (19) | 0.55982 (11) | 0.64070 (9) | 0.0451 (4) | |
HA4 | 0.8076 | 0.5855 | 0.5971 | 0.054* | |
CL4 | 0.9623 (2) | 0.60637 (13) | 0.67140 (12) | 0.0568 (5) | |
HL14 | 0.9309 | 0.6585 | 0.6829 | 0.085* | |
HL24 | 1.0380 | 0.6092 | 0.6375 | 0.085* | |
HL34 | 0.9962 | 0.5807 | 0.7131 | 0.085* | |
C4 | 0.88906 (19) | 0.47719 (11) | 0.62274 (9) | 0.0470 (4) | |
O4 | 0.93292 (19) | 0.45995 (10) | 0.56531 (8) | 0.0723 (4) | |
O5 | 0.88386 (18) | 0.43023 (8) | 0.67759 (7) | 0.0631 (4) | |
C15 | 0.9361 (2) | 0.34770 (12) | 0.67624 (12) | 0.0609 (5) | |
C25 | 1.0925 (3) | 0.34759 (19) | 0.6623 (3) | 0.1191 (14) | |
H2A5 | 1.1101 | 0.3666 | 0.6156 | 0.179* | |
H2B5 | 1.1287 | 0.2951 | 0.6667 | 0.179* | |
H2C5 | 1.1396 | 0.3810 | 0.6956 | 0.179* | |
C35 | 0.8974 (6) | 0.3175 (2) | 0.74756 (17) | 0.1367 (19) | |
H3A5 | 0.7957 | 0.3189 | 0.7532 | 0.205* | |
H3B5 | 0.9412 | 0.3498 | 0.7828 | 0.205* | |
H3C5 | 0.9305 | 0.2645 | 0.7525 | 0.205* | |
C45 | 0.8569 (4) | 0.30347 (18) | 0.6201 (2) | 0.1093 (11) | |
H4A5 | 0.8820 | 0.3241 | 0.5748 | 0.164* | |
H4B5 | 0.7560 | 0.3092 | 0.6273 | 0.164* | |
H4C5 | 0.8819 | 0.2489 | 0.6223 | 0.164* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C10 | 0.136 (2) | 0.0469 (12) | 0.0593 (13) | −0.0278 (15) | −0.0160 (14) | 0.0080 (10) |
C20 | 0.109 (2) | 0.0717 (16) | 0.0765 (16) | −0.0142 (15) | −0.0238 (15) | 0.0014 (13) |
C30 | 0.123 (3) | 0.099 (2) | 0.137 (3) | −0.014 (2) | −0.024 (3) | 0.038 (2) |
C40 | 0.142 (4) | 0.117 (4) | 0.239 (7) | −0.058 (4) | −0.082 (5) | 0.082 (4) |
C50 | 0.236 (8) | 0.122 (4) | 0.234 (7) | −0.112 (5) | −0.138 (6) | 0.057 (4) |
C60 | 0.217 (5) | 0.0707 (19) | 0.095 (2) | −0.055 (3) | −0.035 (3) | 0.0001 (17) |
C70 | 0.165 (3) | 0.0422 (12) | 0.0889 (19) | −0.0050 (15) | 0.008 (2) | −0.0008 (12) |
O00 | 0.1035 (12) | 0.0553 (8) | 0.0660 (9) | 0.0009 (8) | −0.0050 (8) | 0.0133 (7) |
C80 | 0.0628 (11) | 0.0519 (10) | 0.0475 (10) | 0.0096 (9) | −0.0007 (9) | 0.0028 (8) |
O80 | 0.0881 (10) | 0.0515 (8) | 0.0487 (7) | −0.0016 (7) | −0.0046 (7) | −0.0041 (6) |
N1 | 0.0583 (9) | 0.0590 (9) | 0.0418 (8) | 0.0058 (7) | −0.0078 (7) | 0.0050 (7) |
CA1 | 0.0468 (9) | 0.0610 (11) | 0.0429 (9) | −0.0013 (8) | −0.0020 (7) | 0.0001 (8) |
CL1 | 0.0484 (10) | 0.0894 (16) | 0.0596 (12) | 0.0119 (11) | 0.0025 (9) | 0.0035 (11) |
CR1 | 0.0752 (14) | 0.0852 (15) | 0.0498 (11) | −0.0208 (12) | −0.0142 (10) | −0.0013 (10) |
C1 | 0.0478 (9) | 0.0419 (9) | 0.0386 (8) | −0.0022 (7) | −0.0011 (7) | −0.0053 (7) |
O1 | 0.0546 (7) | 0.0562 (7) | 0.0443 (6) | −0.0024 (6) | 0.0027 (5) | 0.0044 (6) |
N2 | 0.0472 (7) | 0.0488 (8) | 0.0371 (7) | 0.0032 (6) | 0.0030 (6) | −0.0001 (6) |
CA2 | 0.0499 (9) | 0.0462 (9) | 0.0451 (9) | 0.0077 (7) | 0.0046 (7) | 0.0010 (7) |
CL2 | 0.0834 (15) | 0.0475 (11) | 0.0733 (14) | 0.0123 (10) | 0.0044 (12) | −0.0111 (10) |
CR2 | 0.0522 (10) | 0.0807 (14) | 0.0548 (11) | 0.0133 (11) | 0.0095 (9) | 0.0110 (10) |
C2 | 0.0495 (9) | 0.0513 (10) | 0.0435 (9) | 0.0044 (8) | 0.0033 (7) | 0.0032 (7) |
O2 | 0.0969 (12) | 0.0620 (9) | 0.0573 (9) | 0.0175 (8) | −0.0084 (8) | 0.0147 (7) |
N3 | 0.0448 (7) | 0.0502 (8) | 0.0379 (7) | 0.0033 (6) | −0.0026 (6) | 0.0000 (6) |
CA3 | 0.0421 (9) | 0.0649 (11) | 0.0425 (9) | −0.0024 (8) | −0.0018 (7) | −0.0061 (8) |
CL3 | 0.0454 (10) | 0.109 (2) | 0.0632 (12) | 0.0041 (11) | −0.0092 (9) | −0.0072 (13) |
CR3 | 0.0762 (14) | 0.0627 (13) | 0.0642 (12) | −0.0178 (11) | −0.0037 (11) | −0.0073 (10) |
C3 | 0.0494 (9) | 0.0602 (10) | 0.0371 (8) | 0.0002 (8) | −0.0018 (7) | −0.0039 (7) |
O3 | 0.0675 (9) | 0.1385 (17) | 0.0408 (7) | −0.0235 (10) | 0.0002 (7) | −0.0187 (9) |
N4 | 0.0421 (7) | 0.0550 (9) | 0.0353 (7) | 0.0037 (6) | −0.0016 (6) | −0.0029 (6) |
CA4 | 0.0432 (8) | 0.0524 (10) | 0.0397 (8) | 0.0058 (7) | 0.0010 (7) | 0.0012 (7) |
CL4 | 0.0499 (9) | 0.0596 (11) | 0.0609 (11) | −0.0012 (8) | 0.0025 (9) | −0.0020 (9) |
C4 | 0.0451 (8) | 0.0534 (10) | 0.0426 (9) | 0.0017 (8) | 0.0016 (7) | −0.0031 (7) |
O4 | 0.0936 (11) | 0.0714 (10) | 0.0519 (8) | 0.0141 (8) | 0.0192 (8) | −0.0052 (7) |
O5 | 0.0907 (10) | 0.0507 (7) | 0.0479 (7) | 0.0204 (7) | 0.0081 (7) | 0.0014 (6) |
C15 | 0.0717 (13) | 0.0451 (10) | 0.0659 (12) | 0.0141 (9) | 0.0015 (11) | −0.0056 (9) |
C25 | 0.0610 (15) | 0.0785 (18) | 0.218 (4) | 0.0135 (14) | −0.015 (2) | 0.014 (2) |
C35 | 0.240 (5) | 0.0813 (19) | 0.089 (2) | 0.078 (3) | 0.040 (3) | 0.0299 (17) |
C45 | 0.125 (3) | 0.0600 (15) | 0.143 (3) | −0.0191 (16) | −0.033 (2) | −0.0080 (17) |
C10—C60 | 1.389 (4) | CR2—HR22 | 0.9600 |
C10—C20 | 1.365 (5) | CR2—HR32 | 0.9600 |
C10—C70 | 1.515 (5) | C2—O2 | 1.207 (2) |
C20—C30 | 1.375 (5) | C2—N3 | 1.349 (3) |
C20—H20 | 0.9300 | N3—CA3 | 1.469 (2) |
C30—C40 | 1.358 (7) | N3—H03 | 0.861 (16) |
C30—H30 | 0.9300 | CA3—CL3 | 1.537 (3) |
C40—C50 | 1.390 (11) | CA3—CR3 | 1.524 (3) |
C40—H40 | 0.9300 | CA3—C3 | 1.537 (3) |
C50—C60 | 1.376 (9) | CL3—HL13 | 0.9600 |
C50—H50 | 0.9300 | CL3—HL23 | 0.9600 |
C60—H60 | 0.9300 | CL3—HL33 | 0.9600 |
C70—O00 | 1.449 (4) | CG3—HR13 | 0.9600 |
C70—H7A0 | 0.9700 | CG3—HR23 | 0.9600 |
C70—H7B0 | 0.9700 | CG3—HR33 | 0.9600 |
O00—C80 | 1.344 (3) | C3—O3 | 1.224 (2) |
C80—O80 | 1.225 (2) | C3—N4 | 1.327 (2) |
C80—N1 | 1.328 (3) | N4—CA4 | 1.452 (2) |
N1—CA1 | 1.461 (3) | N4—H04 | 0.849 (16) |
N1—H01 | 0.888 (18) | CA4—CL4 | 1.526 (3) |
CA1—CL1 | 1.528 (3) | CA4—C4 | 1.525 (3) |
CA1—CR1 | 1.537 (3) | CA4—HA4 | 0.9800 |
CA1—C1 | 1.533 (3) | CL4—HL14 | 0.9600 |
CL1—HL11 | 0.9600 | CL4—HL24 | 0.9600 |
CL1—HL21 | 0.9600 | CL4—HL34 | 0.9600 |
CL1—HL31 | 0.9600 | C4—O4 | 1.204 (2) |
CR1—HR11 | 0.9600 | C4—O5 | 1.316 (2) |
CR1—HR21 | 0.9600 | O5—C15 | 1.489 (2) |
CR1—HR31 | 0.9600 | C15—C35 | 1.496 (4) |
C1—O1 | 1.224 (2) | C15—C25 | 1.490 (4) |
C1—N2 | 1.344 (2) | C15—C45 | 1.503 (4) |
N2—CA2 | 1.475 (2) | C25—H2A5 | 0.9600 |
N2—H02 | 0.871 (15) | C25—H2B5 | 0.9600 |
CA2—CL2 | 1.521 (3) | C25—H2C5 | 0.9600 |
CA2—CR2 | 1.527 (3) | C35—H3A5 | 0.9600 |
CA2—C2 | 1.551 (3) | C35—H3B5 | 0.9600 |
CG2—HL12 | 0.9600 | C35—H3C5 | 0.9600 |
CG2—HL22 | 0.9600 | C45—H4A5 | 0.9600 |
CG2—HL32 | 0.9600 | C45—H4B5 | 0.9600 |
CR2—HR12 | 0.9600 | C45—H4C5 | 0.9600 |
C60—C10—C20 | 119.1 (4) | CA2—CL2—HL32 | 109.5 |
C60—C10—C70 | 117.7 (4) | HL12—CL2—HL32 | 109.5 |
C20—C10—C70 | 123.2 (3) | HL22—CL2—HL32 | 109.5 |
C30—C20—C10 | 121.9 (3) | O2—C2—N3 | 124.44 (18) |
C30—C20—H20 | 119.1 | O2—C2—CA2 | 120.30 (17) |
C10—C20—H20 | 119.1 | N3—C2—CA2 | 115.08 (15) |
C20—C30—C40 | 119.9 (5) | C2—N3—CA3 | 125.08 (16) |
C20—C30—H30 | 120.1 | C2—N3—H03 | 117.5 (14) |
C40—C30—H30 | 120.1 | CA3—N3—H03 | 117.1 (14) |
C30—C40—C50 | 118.8 (6) | N3—CA3—CL3 | 111.98 (17) |
C30—C40—H40 | 120.6 | N3—CA3—C3 | 112.07 (14) |
C50—C40—H40 | 120.6 | C3—CA3—CL3 | 109.77 (16) |
C60—C50—C40 | 121.6 (5) | CL3—CA3—CR3 | 110.13 (19) |
C60—C50—H50 | 119.2 | CA3—CR3—HR13 | 109.5 |
C40—C50—H50 | 119.2 | CA3—CR3—HR23 | 109.5 |
C50—C60—C10 | 118.7 (5) | HR13—CR3—HR23 | 109.5 |
C50—C60—H60 | 120.7 | CA3—CR3—HR33 | 109.5 |
C10—C60—H60 | 120.7 | HR13—CR3—HR33 | 109.5 |
O00—C70—C10 | 113.2 (2) | HR23—CR3—HR33 | 109.5 |
O00—C70—H7A0 | 108.9 | CA3—CL3—HL13 | 109.5 |
C10—C70—H7A0 | 108.9 | CA3—CL3—HL23 | 109.5 |
O00—C70—H7B0 | 108.9 | HL13—CL3—HL23 | 109.5 |
C10—C70—H7B0 | 108.9 | CA3—CL3—HL33 | 109.5 |
H7A0—C70—H7B0 | 107.8 | HL13—CL3—HL33 | 109.5 |
C80—O00—C70 | 115.51 (19) | HL23—CL3—HL33 | 109.5 |
O80—C80—N1 | 125.1 (2) | O3—C3—N4 | 122.05 (17) |
O80—C80—O00 | 123.7 (2) | O3—C3—CA3 | 119.40 (17) |
N1—C80—O00 | 111.22 (17) | N4—C3—CA3 | 118.30 (15) |
C80—N1—CA1 | 120.98 (16) | C3—N4—CA4 | 120.71 (14) |
C80—N1—H01 | 122 (2) | C3—N4—H04 | 126.8 (16) |
CA1—N1—H01 | 117 (2) | CA4—N4—H04 | 112.4 (17) |
N1—CA1—CR1 | 107.73 (16) | N4—CA4—CL4 | 110.86 (14) |
N1—CA1—C1 | 110.98 (15) | N4—CA4—C4 | 112.00 (15) |
C1—CA1—CR1 | 107.06 (17) | CL4—CA4—C4 | 108.99 (15) |
N2—CA2—CR2 | 107.58 (14) | N4—CA4—HA4 | 108.3 |
C2—CA2—CR2 | 107.19 (16) | CL4—CA4—HA4 | 108.3 |
N3—CA3—CR3 | 107.07 (17) | C4—CA4—HA4 | 108.3 |
C3—CA3—CR3 | 105.60 (17) | CL4—CL4—HL14 | 109.5 |
N1—CA1—CL1 | 111.44 (18) | CL4—CL4—HL24 | 109.5 |
CR1—CA1—CL1 | 109.90 (18) | HL14—CL4—HL24 | 109.5 |
C1—CA1—CL1 | 109.61 (14) | CA4—CL4—HL34 | 109.5 |
CA1—CL1—HL11 | 109.5 | HL14—CL4—HL34 | 109.5 |
CA1—CL1—HL21 | 109.5 | HL24—CL4—HL34 | 109.5 |
HL11—CL1—HL21 | 109.5 | O4—C4—O5 | 125.77 (17) |
CA1—CL1—HL31 | 109.5 | O4—C4—CA4 | 122.39 (17) |
HL11—CL1—HL31 | 109.5 | O5—C4—CA4 | 111.79 (14) |
HL21—CL1—HL31 | 109.5 | C4—O5—C15 | 123.23 (16) |
CA1—CR1—HR11 | 109.5 | O5—C15—C35 | 103.25 (18) |
CA1—CR1—HR21 | 109.5 | O5—C15—C25 | 109.1 (2) |
HR11—CR1—HR21 | 109.5 | C35—C15—C25 | 113.5 (3) |
CA1—CR1—HR31 | 109.5 | O5—C15—C45 | 108.9 (2) |
HR11—CR1—HR31 | 109.5 | C35—C15—C45 | 110.7 (3) |
HR21—CR1—HR31 | 109.5 | C25—C15—C45 | 111.0 (3) |
O1—C1—N2 | 122.64 (17) | C15—C25—H2A5 | 109.5 |
O1—C1—CA1 | 120.60 (16) | C15—C25—H2B5 | 109.5 |
N2—C1—CA1 | 116.71 (14) | H2A5—C25—H2B5 | 109.5 |
C1—N2—CA2 | 122.16 (14) | C15—C25—H2C5 | 109.5 |
C1—N2—H02 | 118.2 (16) | H2A5—C25—H2C5 | 109.5 |
CA2—N2—H02 | 118.9 (16) | H2B5—C25—H2C5 | 109.5 |
N2—CA2—CL2 | 109.97 (17) | C15—C35—H3A5 | 109.5 |
CR2—CA2—CL2 | 111.13 (17) | C15—C35—H3B5 | 109.5 |
N2—CA2—C2 | 110.79 (14) | H3A5—C35—H3B5 | 109.5 |
C2—CA2—CL2 | 110.12 (17) | C15—C35—H3C5 | 109.5 |
CA2—CR2—HR12 | 109.5 | H3A5—C35—H3C5 | 109.5 |
CA2—CR2—HR22 | 109.5 | H3B5—C35—H3C5 | 109.5 |
HR12—CR2—HR22 | 109.5 | C15—C45—H4A5 | 109.5 |
CA2—CR2—HR32 | 109.5 | C15—C45—H4B5 | 109.5 |
HR12—CR2—HR32 | 109.5 | H4A5—C45—H4B5 | 109.5 |
HR22—CR2—HR32 | 109.5 | C15—C45—H4C5 | 109.5 |
CA2—CL2—HL12 | 109.5 | H4A5—C45—H4C5 | 109.5 |
CA2—CL2—HL22 | 109.5 | H4B5—C45—H4C5 | 109.5 |
HL12—CL2—HL22 | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H03···O80 | 0.86 (2) | 2.31 (2) | 3.117 (2) | 156 (2) |
N4—H04···O1 | 0.85 (2) | 2.22 (2) | 3.059 (2) | 169 (2) |
N1—H01···O3i | 0.89 (2) | 2.05 (2) | 2.929 (2) | 171 (3) |
N2—H02···O4i | 0.87 (2) | 2.27 (2) | 3.121 (2) | 165 (2) |
Symmetry code: (i) −x+3/2, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C27H42N4O7 |
Mr | 534.65 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 9.3730 (19), 17.032 (3), 19.032 (4) |
V (Å3) | 3038.3 (11) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.69 |
Crystal size (mm) | 1.4 × 1.1 × 0.9 |
Data collection | |
Diffractometer | Bruker D8 Venture diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.423, 0.754 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5835, 5541, 5018 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.618 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.142, 1.16 |
No. of reflections | 5541 |
No. of parameters | 358 |
No. of restraints | 4 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.23 |
Absolute structure | Flack (1983), with how many Friedel pairs? |
Absolute structure parameter | 0.05 (18) |
Computer programs: PROTEUM2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS86 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XTALVIEW (McRee 1999) and SwissPDBViewer (Guex & Peitsch, 1997), CHEMDRAW (Mills, 2006) and ORTEP-3 for Windows (Farrugia, 2012).
ω(z) | O00—C80—N1—CA1 | 173.8 (2) |
ϕ(1) | C80—N1—CA1—C1 | 54.8 (3) |
ψ(1) | N1—CA1—C1—N2 | 36.3 (2) |
ω(1) | CA1—C1—N2—CA2 | 173.2 (2) |
ϕ(2) | C1—N2—CA2—C2 | 54.2 (2) |
ψ(2) | N2—CA2—C2—N3 | 39.4 (2) |
ω(2) | CA2—C2—N3—CA3 | 172.5 (2) |
ϕ(3) | C2—N3—CA3—C3 | 75.7 (2) |
ψ(3) | N3—CA3—C3—N4 | 15.5 (3) |
ω(3) | CA3—C3—N4—CA4 | 165.9 (2) |
ϕ(4) | C3—N4—CA4—C4 | -69.2 (2) |
ψ(4) | N4—CA4—C4—O5 | -38.3 (2) |
ω(4) | C4A—C4—O5—C15 | -176.0 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H03···O80 | 0.86 (2) | 2.31 (2) | 3.117 (2) | 156 (2) |
N4—H04···O1 | 0.85 (2) | 2.22 (2) | 3.059 (2) | 169 (2) |
N1—H01···O3i | 0.89 (2) | 2.05 (2) | 2.929 (2) | 171 (3) |
N2—H02···O4i | 0.87 (2) | 2.27 (2) | 3.121 (2) | 165 (2) |
Symmetry code: (i) −x+3/2, −y+1, z+1/2. |
N1—CA1—CR1 | 107.73 (16) | N1—CA1—CL1 | 111.44 (18) |
C1—CA1—CR1 | 107.06 (17) | C1—CA1—CL1 | 109.61 (14) |
N2—CA2—CR2 | 107.58 (14) | N2—CA2—CL2 | 109.97 (17) |
C2—CA2—CR2 | 107.19 (16) | C2—CA2—CL2 | 110.12 (17) |
N3—CA3—CR3 | 107.07 (17) | N3—CA3—CL3 | 111.98 (17) |
C3—CA3—CR3 | 105.60 (17) | C3—CA3—CL3 | 109.77 (16) |
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