Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229615018422/eg3190sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2053229615018422/eg3190Isup2.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S2053229615018422/eg3190IIsup3.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229615018422/eg3190Isup4.cml | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229615018422/eg3190IIsup5.cml |
CCDC references: 1429155; 1429154
Isatin (1H-indole-2,3-dione) derivatives represent synthetically useful substrates which can be used to prepare a broad range of heterocyclic compounds including examples of pharmacological significance (Bekircan & Bektas, 2008). Such isatin compounds are of interest due to their biological activity (Feng et al., 2010) and widespread use as synthetic precursors (da Silva et al., 2001). They show potent anticonvulsant activity at low concentrations (Mathur & Nain, 2014). The high affinity of isatin Schiff bases for chelation towards transition metal ions leads to a wide range of biological activities (Premanathan et al., 2012). We report here an iodine-mediated process for C—H functionalization of sp, sp2 and sp3 C atoms in isatin synthesis. Copper-mediated cross-dehydrogenative C—N annulations and dealkylative C—N annulations of 2'-N-aryl/alkylaminoacetophenones and 2'-N,N-dialkylaminoacetophenones, respectively, give isatins in good yields, and the NMR spectra [Does not follow from previous clause?] of the title compounds are in agreement with values reported in the literature (Ilangovan & Satish, 2013; Satish et al., 2015). As part of our interest in the identification of bioactive compounds and in our attempt to understand the above reaction mechanisms, we report here the synthesis and structure of two isatin derivatives, the title compounds, (I) and (II).
Preparation of 1-benzyl-4,5,6-trimethoxyindoline-2,3-dione, (I)
To a solution of 1-(2-(benzylamino)-2,3,4-trimethoxyphenyl)ethanone (100 mg, 0.317 mmol) [In what solvent?], Cu(OAc)2·H2O (31.6 mg, 0.158 mmol), NaOAc (39 mg, 0.475 mmol) and dimethylsiloxane (DMSO; 2 ml) were added at ambient temperature and the mixture heated to 353 K for 15 h in air. Progress of the reaction was monitored by thin-layer chromotography (TLC). Upon completion, the reaction mixture was allowed to cool to ambient temperature and then diluted with ethyl acetate and water. The organic phase was separated, dried over Na2SO4, filtered and concentrated. The crude product was purified by silica-gel column chromatography using hexane–ethyl acetate (9:1 v/v) as eluent. It was recrystallized from a solution in a hexane–ethyl acetate mixture (9:1 v/v) by slow evaporation. The solution was allowed to cool to room temperature (298 K) [When had it been re-heated?]. Good quality single crystals of (I) were obtained after 2 d and a crystal suitable for X-ray diffraction study was selected under an optical microscope. Compound (I) was obtained as a red solid, yield 89% (92.3 mg), m.p. 424–425 K. Spectroscopic analysis: 1H NMR (400 MHz, CDCl3, δ, p.p.m.): 7.27–7.38 (m, 5H), 5.99 (s, 1H), 4.89 (s, 2H), 4.20 (s, 3H), 3.81 (s, 3H), 3.73 (s, 3H); 13C NMR (100 MHz, CDCl3, δ, p.p.m.): 177.56, 162.24, 159.37, 154.20, 148.68, 136.39, 134.95, 129.08, 128.16, 127.29, 102.62, 90.54, 62.25, 61.48, 56.60, 43.95.
Preparation of 1-benzyl-5-fluoroindoline-2,3-dione, (II)
To a solution of benzyl(2-ethynyl-4-fluorophenyl)amine (100 mg, 0.444 mmol) [In what solvent?], I2 (22.5 mg, 0.088 mmol) and DMSO (3 ml) were added and the mixture heated to 373 K for 3 h in air. Progress of the reaction was monitored by TLC. Upon completion, the reaction mixture was allowed to cool to ambient temperature and then quenched with aqueous sodium thiosulfate and ethyl acetate. The organic phase was separated, dried over Na2SO4, filtered and concentrated. The crude product was purified by silica-gel column chromatography using hexane–ethyl acetate (9:1 v/v). It was recrystallized from a solution in a hexane–ethyl acetate mixture (9:1 v/v) by slow evaporation. The solution was allowed to cool to room temperature (298 K) [When had it been re-heated?]. Good quality single crystals of (II) were obtained after 3 d and a crystal suitable for X-ray diffraction study was selected under an optical microscope. Compound (II) was obtained as a red solid, yield 72% (81.5 mg), m.p. 408–410 K. Spectroscopic analysis: 1H NMR (400 MHz, CDCl3, δ, p.p.m.): 7.28–7.18 (m, 6H), 7.11 (td, J = 2.4, 2.8 and 2.8 Hz, 1H), 6.66 (dd, J = 3.6 and 3.6 Hz, 1H), 4.83 (s, 2H); 13C NMR (100 MHz, CDCl3, δ, p.p.m.): 182.7, 160.6, 158.1, 158.1, 146.8, 134.2, 129.1, 128.3, 127.4, 124.8, 124.6, 118.3, 118.2, 112.5, 112.3, 112.3, 44.2. [In the CIF tables, both crystals are described as 'solid', which is self-evident. The item #_exptl_crystal_description should be a description of the shape of the crystal, e.g. block. Please supply these details and we will add them to the CIF]
Crystal data, data collection and structure refinement details are summarized in Table 1. In (I), C-bound H atoms were included in calculated positions and treated as riding, with C—H = 0.93–0.97 Å, and with Uiso(H) = 1.5Ueq(C) for methyl H atoms or 1.2Ueq(C) for other H atoms. A similar procedure was carried out for (II). The initial structure model for both compounds showed values greater than 0.7 for the Flack parameter (Flack, 1983), so the structure models were inverted. In both cases, rather high standard uncertainties for the Flack parameter preclude reliable assignment of the absolute structure.
Perspective views of (I) and (II) are provided in Figs. 1 and 2, respectively. Corresponding bond distances and angles of the isatin ring systems in (I) and (II) are essentially equivalent and comparable with those in related structures (Helliwell et al., 2012; Lötter et al., 2007). A superposition of the isatin ring systems in (I) and (II) (Fig. 3) gives an r.m.s. deviation of 0.061 Å and underlines the conformational similarity between these molecules (Gans & Shalloway, 2001).
The isatin ring systems are almost planar, with r.m.s. deviations of the fitted atom [Specify?] amounting to 0.046 Å in (I) and 0.009 Å in (II); the bicyclic scaffolds subtend dihedral angles of 73.04 (7) and 76.82 (11)° with the benzyl groups in (I) and (II), respectively. The relative conformation about the bond joining the isatin and benzyl residues in (I) and (II) is defined by C9—N1—C1—C2 torsion angles of −2.7 (3)° in (I) and −4.8 (7)° in (II); thus, these conformations are syn-periplanar. The sums of the bond angles around atom N1 are almost 360.0° (Table 2) in both (I) and (II), indicating little evidence for the presence of sp3 lone pairs.
The crystal structures of (I) and (II) are stabilized by non-classical C—H···O hydrogen bonds (Tables 3 and 4). In (I), the shortest contacts give rise to an intramolecular R(6) (Bernstein et al., 1995) and an intermolecular R12(7) motif (Fig. 4). The structure of (II) extends along the [110] direction with the contact between C3 and O2 via H3, generating a C(7) motif (Fig. 5).
Data collection: SMART (Bruker, 2008) for (I); SMART (Bruker, 2004) for (II). Cell refinement: SAINT (Bruker, 2008) for (I); SAINT (Bruker, 2004) for (II). Data reduction: SAINT (Bruker, 2008) for (I); SAINT (Bruker, 2004) for (II). For both compounds, program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015); molecular graphics: QMOL (Gans & Shalloway, 2001), Mercury (Macrae et al., 2008); software used to prepare material for publication: WinGX publication routines (Farrugia, 2012) and PLATON (Spek, 2009).
C18H17NO5 | F(000) = 688 |
Mr = 327.32 | Dx = 1.394 Mg m−3 |
Orthorhombic, P212121 | Melting point: 425 K |
a = 7.548 (5) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 13.066 (5) Å | µ = 0.10 mm−1 |
c = 15.815 (5) Å | T = 293 K |
V = 1559.7 (13) Å3 | Block, red |
Z = 4 | 0.20 × 0.15 × 0.10 mm |
Bruker Kappa APEXII CCD area-detector diffractometer | 3720 independent reflections |
Radiation source: fine-focus sealed tube | 3183 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.019 |
ω and φ scans | θmax = 28.5°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −10→9 |
Tmin = 0.980, Tmax = 0.990 | k = −16→17 |
8685 measured reflections | l = −19→16 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.038 | w = 1/[σ2(Fo2) + (0.0562P)2 + 0.1642P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.102 | (Δ/σ)max < 0.001 |
S = 1.02 | Δρmax = 0.17 e Å−3 |
3720 reflections | Δρmin = −0.31 e Å−3 |
220 parameters | Absolute structure: Flack x parameter determined using 1221 quotients [(I+) - (I-)]/[(I+) + (I-)] (Parsons et al., 2013) |
0 restraints | Absolute structure parameter: −0.2 (3) |
Primary atom site location: structure-invariant direct methods |
C18H17NO5 | V = 1559.7 (13) Å3 |
Mr = 327.32 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 7.548 (5) Å | µ = 0.10 mm−1 |
b = 13.066 (5) Å | T = 293 K |
c = 15.815 (5) Å | 0.20 × 0.15 × 0.10 mm |
Bruker Kappa APEXII CCD area-detector diffractometer | 3720 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 3183 reflections with I > 2σ(I) |
Tmin = 0.980, Tmax = 0.990 | Rint = 0.019 |
8685 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | H-atom parameters constrained |
wR(F2) = 0.102 | Δρmax = 0.17 e Å−3 |
S = 1.02 | Δρmin = −0.31 e Å−3 |
3720 reflections | Absolute structure: Flack x parameter determined using 1221 quotients [(I+) - (I-)]/[(I+) + (I-)] (Parsons et al., 2013) |
220 parameters | Absolute structure parameter: −0.2 (3) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.9380 (2) | 0.80276 (13) | −0.21083 (11) | 0.0359 (4) | |
O1 | 1.0084 (3) | 0.95829 (13) | −0.27160 (11) | 0.0575 (5) | |
O2 | 0.9315 (3) | 1.03455 (12) | −0.10170 (12) | 0.0566 (5) | |
O3 | 0.8453 (3) | 0.92388 (13) | 0.06095 (10) | 0.0565 (5) | |
O4 | 0.7933 (2) | 0.71734 (12) | 0.12615 (9) | 0.0427 (4) | |
O5 | 0.8121 (2) | 0.56330 (11) | 0.01949 (10) | 0.0464 (4) | |
C1 | 0.8981 (2) | 0.76966 (16) | −0.12762 (13) | 0.0334 (4) | |
C2 | 0.8753 (3) | 0.67042 (15) | −0.10177 (13) | 0.0362 (4) | |
H2 | 0.8814 | 0.6158 | −0.1394 | 0.043* | |
C3 | 0.8421 (3) | 0.65593 (15) | −0.01495 (13) | 0.0359 (4) | |
C4 | 0.8361 (3) | 0.73723 (16) | 0.04315 (13) | 0.0350 (4) | |
C5 | 0.8571 (3) | 0.83774 (16) | 0.01407 (13) | 0.0371 (5) | |
C6 | 0.8882 (3) | 0.85266 (16) | −0.07256 (13) | 0.0358 (4) | |
C7 | 0.9269 (3) | 0.94496 (17) | −0.12030 (14) | 0.0406 (5) | |
C8 | 0.9645 (3) | 0.90645 (16) | −0.21160 (14) | 0.0406 (5) | |
C9 | 0.9552 (3) | 0.73712 (17) | −0.28543 (13) | 0.0398 (5) | |
H9A | 0.9979 | 0.6703 | −0.2683 | 0.048* | |
H9B | 1.0416 | 0.7665 | −0.3238 | 0.048* | |
C10 | 0.7804 (3) | 0.72530 (16) | −0.33074 (12) | 0.0362 (4) | |
C11 | 0.7229 (3) | 0.80044 (18) | −0.38612 (15) | 0.0472 (5) | |
H11 | 0.7956 | 0.8562 | −0.3974 | 0.057* | |
C12 | 0.5587 (4) | 0.7939 (2) | −0.42497 (17) | 0.0575 (7) | |
H12 | 0.5225 | 0.8444 | −0.4626 | 0.069* | |
C13 | 0.4492 (4) | 0.7119 (2) | −0.40751 (17) | 0.0600 (7) | |
H13 | 0.3373 | 0.7081 | −0.4320 | 0.072* | |
C14 | 0.5064 (4) | 0.6353 (2) | −0.35341 (17) | 0.0552 (6) | |
H14 | 0.4338 | 0.5794 | −0.3422 | 0.066* | |
C15 | 0.6721 (3) | 0.64206 (18) | −0.31603 (14) | 0.0444 (5) | |
H15 | 0.7107 | 0.5899 | −0.2806 | 0.053* | |
C16 | 0.8733 (5) | 0.9228 (2) | 0.14907 (16) | 0.0615 (7) | |
H16A | 0.9757 | 0.8821 | 0.1618 | 0.092* | |
H16B | 0.7715 | 0.8941 | 0.1767 | 0.092* | |
H16C | 0.8917 | 0.9915 | 0.1688 | 0.092* | |
C17 | 0.9261 (4) | 0.6656 (2) | 0.17463 (16) | 0.0537 (6) | |
H17A | 1.0367 | 0.7013 | 0.1694 | 0.080* | |
H17B | 0.9394 | 0.5969 | 0.1541 | 0.080* | |
H17C | 0.8912 | 0.6640 | 0.2330 | 0.080* | |
C18 | 0.8117 (4) | 0.47563 (17) | −0.03439 (16) | 0.0559 (7) | |
H18A | 0.9263 | 0.4679 | −0.0599 | 0.084* | |
H18B | 0.7240 | 0.4843 | −0.0778 | 0.084* | |
H18C | 0.7844 | 0.4157 | −0.0017 | 0.084* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0411 (9) | 0.0385 (9) | 0.0281 (8) | −0.0028 (7) | −0.0030 (7) | 0.0020 (7) |
O1 | 0.0827 (13) | 0.0496 (9) | 0.0402 (9) | −0.0133 (9) | 0.0000 (9) | 0.0113 (8) |
O2 | 0.0830 (13) | 0.0352 (8) | 0.0516 (10) | −0.0059 (8) | −0.0035 (10) | 0.0002 (7) |
O3 | 0.0898 (13) | 0.0418 (9) | 0.0379 (9) | 0.0031 (9) | −0.0002 (9) | −0.0062 (7) |
O4 | 0.0428 (8) | 0.0532 (9) | 0.0320 (7) | −0.0017 (7) | 0.0059 (6) | 0.0027 (6) |
O5 | 0.0630 (10) | 0.0375 (8) | 0.0385 (8) | −0.0092 (8) | 0.0022 (7) | 0.0036 (6) |
C1 | 0.0292 (9) | 0.0395 (10) | 0.0314 (10) | −0.0015 (8) | −0.0027 (8) | 0.0029 (8) |
C2 | 0.0404 (10) | 0.0351 (10) | 0.0331 (10) | −0.0018 (8) | −0.0014 (9) | −0.0015 (8) |
C3 | 0.0353 (10) | 0.0342 (10) | 0.0381 (11) | −0.0035 (8) | −0.0016 (8) | 0.0031 (8) |
C4 | 0.0314 (10) | 0.0431 (11) | 0.0306 (10) | −0.0012 (9) | 0.0021 (8) | 0.0015 (8) |
C5 | 0.0367 (11) | 0.0385 (11) | 0.0362 (11) | −0.0011 (9) | −0.0001 (8) | −0.0045 (8) |
C6 | 0.0375 (10) | 0.0347 (10) | 0.0351 (11) | −0.0023 (8) | −0.0016 (8) | 0.0001 (8) |
C7 | 0.0446 (11) | 0.0387 (11) | 0.0384 (11) | −0.0035 (9) | −0.0048 (9) | 0.0035 (9) |
C8 | 0.0440 (11) | 0.0395 (11) | 0.0382 (11) | −0.0043 (9) | −0.0064 (9) | 0.0037 (9) |
C9 | 0.0424 (11) | 0.0458 (11) | 0.0311 (10) | 0.0035 (10) | 0.0019 (9) | −0.0024 (9) |
C10 | 0.0435 (10) | 0.0401 (10) | 0.0249 (9) | 0.0055 (9) | 0.0033 (8) | −0.0060 (8) |
C11 | 0.0559 (13) | 0.0469 (12) | 0.0388 (12) | 0.0054 (10) | −0.0007 (11) | 0.0049 (10) |
C12 | 0.0641 (15) | 0.0656 (16) | 0.0430 (13) | 0.0192 (14) | −0.0109 (12) | 0.0019 (11) |
C13 | 0.0472 (13) | 0.090 (2) | 0.0429 (13) | 0.0109 (14) | −0.0085 (11) | −0.0148 (14) |
C14 | 0.0533 (14) | 0.0636 (15) | 0.0488 (14) | −0.0098 (13) | 0.0014 (11) | −0.0146 (12) |
C15 | 0.0558 (14) | 0.0440 (11) | 0.0333 (11) | −0.0005 (11) | −0.0014 (10) | −0.0030 (9) |
C16 | 0.093 (2) | 0.0507 (14) | 0.0403 (13) | −0.0020 (14) | 0.0006 (14) | −0.0106 (11) |
C17 | 0.0646 (16) | 0.0560 (14) | 0.0404 (13) | −0.0027 (12) | −0.0063 (12) | 0.0087 (11) |
C18 | 0.086 (2) | 0.0361 (11) | 0.0456 (13) | −0.0067 (12) | −0.0069 (14) | 0.0021 (10) |
N1—C8 | 1.370 (3) | C9—H9B | 0.9700 |
N1—C1 | 1.418 (3) | C10—C15 | 1.381 (3) |
N1—C9 | 1.464 (3) | C10—C11 | 1.386 (3) |
O1—C8 | 1.212 (3) | C11—C12 | 1.386 (4) |
O2—C7 | 1.207 (3) | C11—H11 | 0.9300 |
O3—C5 | 1.351 (3) | C12—C13 | 1.381 (4) |
O3—C16 | 1.410 (3) | C12—H12 | 0.9300 |
O4—C4 | 1.377 (2) | C13—C14 | 1.386 (4) |
O4—C17 | 1.432 (3) | C13—H13 | 0.9300 |
O5—C3 | 1.346 (2) | C14—C15 | 1.386 (4) |
O5—C18 | 1.428 (3) | C14—H14 | 0.9300 |
C1—C2 | 1.370 (3) | C15—H15 | 0.9300 |
C1—C6 | 1.393 (3) | C16—H16A | 0.9600 |
C2—C3 | 1.409 (3) | C16—H16B | 0.9600 |
C2—H2 | 0.9300 | C16—H16C | 0.9600 |
C3—C4 | 1.405 (3) | C17—H17A | 0.9600 |
C4—C5 | 1.400 (3) | C17—H17B | 0.9600 |
C5—C6 | 1.404 (3) | C17—H17C | 0.9600 |
C6—C7 | 1.453 (3) | C18—H18A | 0.9600 |
C7—C8 | 1.555 (3) | C18—H18B | 0.9600 |
C9—C10 | 1.510 (3) | C18—H18C | 0.9600 |
C9—H9A | 0.9700 | ||
C8—N1—C1 | 109.94 (17) | C15—C10—C11 | 118.6 (2) |
C8—N1—C9 | 124.00 (18) | C15—C10—C9 | 121.2 (2) |
C1—N1—C9 | 126.02 (18) | C11—C10—C9 | 120.1 (2) |
C5—O3—C16 | 121.64 (19) | C10—C11—C12 | 121.1 (2) |
C4—O4—C17 | 115.81 (18) | C10—C11—H11 | 119.4 |
C3—O5—C18 | 118.70 (17) | C12—C11—H11 | 119.4 |
C2—C1—C6 | 122.93 (19) | C13—C12—C11 | 119.7 (2) |
C2—C1—N1 | 126.31 (19) | C13—C12—H12 | 120.2 |
C6—C1—N1 | 110.74 (17) | C11—C12—H12 | 120.2 |
C1—C2—C3 | 116.12 (18) | C12—C13—C14 | 119.8 (2) |
C1—C2—H2 | 121.9 | C12—C13—H13 | 120.1 |
C3—C2—H2 | 121.9 | C14—C13—H13 | 120.1 |
O5—C3—C4 | 114.18 (18) | C15—C14—C13 | 119.9 (3) |
O5—C3—C2 | 123.03 (18) | C15—C14—H14 | 120.1 |
C4—C3—C2 | 122.79 (18) | C13—C14—H14 | 120.1 |
O4—C4—C5 | 121.11 (18) | C10—C15—C14 | 120.9 (2) |
O4—C4—C3 | 119.23 (18) | C10—C15—H15 | 119.6 |
C5—C4—C3 | 119.37 (18) | C14—C15—H15 | 119.6 |
O3—C5—C4 | 126.42 (19) | O3—C16—H16A | 109.5 |
O3—C5—C6 | 115.54 (19) | O3—C16—H16B | 109.5 |
C4—C5—C6 | 118.01 (18) | H16A—C16—H16B | 109.5 |
C1—C6—C5 | 120.73 (19) | O3—C16—H16C | 109.5 |
C1—C6—C7 | 108.11 (18) | H16A—C16—H16C | 109.5 |
C5—C6—C7 | 131.0 (2) | H16B—C16—H16C | 109.5 |
O2—C7—C6 | 133.2 (2) | O4—C17—H17A | 109.5 |
O2—C7—C8 | 122.3 (2) | O4—C17—H17B | 109.5 |
C6—C7—C8 | 104.52 (17) | H17A—C17—H17B | 109.5 |
O1—C8—N1 | 126.9 (2) | O4—C17—H17C | 109.5 |
O1—C8—C7 | 126.6 (2) | H17A—C17—H17C | 109.5 |
N1—C8—C7 | 106.56 (17) | H17B—C17—H17C | 109.5 |
N1—C9—C10 | 111.39 (17) | O5—C18—H18A | 109.5 |
N1—C9—H9A | 109.4 | O5—C18—H18B | 109.5 |
C10—C9—H9A | 109.4 | H18A—C18—H18B | 109.5 |
N1—C9—H9B | 109.4 | O5—C18—H18C | 109.5 |
C10—C9—H9B | 109.4 | H18A—C18—H18C | 109.5 |
H9A—C9—H9B | 108.0 | H18B—C18—H18C | 109.5 |
C8—N1—C1—C2 | −175.4 (2) | C4—C5—C6—C1 | −0.1 (3) |
C9—N1—C1—C2 | 2.7 (3) | O3—C5—C6—C7 | 6.7 (3) |
C8—N1—C1—C6 | 3.2 (2) | C4—C5—C6—C7 | −175.2 (2) |
C9—N1—C1—C6 | −178.73 (19) | C1—C6—C7—O2 | 178.4 (3) |
C6—C1—C2—C3 | −0.5 (3) | C5—C6—C7—O2 | −6.0 (4) |
N1—C1—C2—C3 | 177.94 (18) | C1—C6—C7—C8 | −0.8 (2) |
C18—O5—C3—C4 | 178.7 (2) | C5—C6—C7—C8 | 174.7 (2) |
C18—O5—C3—C2 | −0.8 (3) | C1—N1—C8—O1 | 176.5 (2) |
C1—C2—C3—O5 | 178.1 (2) | C9—N1—C8—O1 | −1.5 (4) |
C1—C2—C3—C4 | −1.4 (3) | C1—N1—C8—C7 | −3.6 (2) |
C17—O4—C4—C5 | −114.1 (2) | C9—N1—C8—C7 | 178.32 (18) |
C17—O4—C4—C3 | 72.1 (3) | O2—C7—C8—O1 | 3.3 (4) |
O5—C3—C4—O4 | −3.1 (3) | C6—C7—C8—O1 | −177.4 (2) |
C2—C3—C4—O4 | 176.46 (19) | O2—C7—C8—N1 | −176.6 (2) |
O5—C3—C4—C5 | −177.05 (19) | C6—C7—C8—N1 | 2.7 (2) |
C2—C3—C4—C5 | 2.5 (3) | C8—N1—C9—C10 | −91.5 (3) |
C16—O3—C5—C4 | 23.5 (4) | C1—N1—C9—C10 | 90.7 (2) |
C16—O3—C5—C6 | −158.6 (2) | N1—C9—C10—C15 | −96.1 (2) |
O4—C4—C5—O3 | 2.4 (3) | N1—C9—C10—C11 | 81.7 (2) |
C3—C4—C5—O3 | 176.2 (2) | C15—C10—C11—C12 | 1.3 (3) |
O4—C4—C5—C6 | −175.51 (18) | C9—C10—C11—C12 | −176.6 (2) |
C3—C4—C5—C6 | −1.6 (3) | C10—C11—C12—C13 | 0.9 (4) |
C2—C1—C6—C5 | 1.2 (3) | C11—C12—C13—C14 | −2.0 (4) |
N1—C1—C6—C5 | −177.40 (19) | C12—C13—C14—C15 | 1.0 (4) |
C2—C1—C6—C7 | 177.35 (19) | C11—C10—C15—C14 | −2.3 (3) |
N1—C1—C6—C7 | −1.3 (2) | C9—C10—C15—C14 | 175.5 (2) |
O3—C5—C6—C1 | −178.2 (2) | C13—C14—C15—C10 | 1.2 (4) |
C15H10FNO2 | Dx = 1.392 Mg m−3 |
Mr = 255.24 | Melting point: 410 K |
Monoclinic, Pc | Mo Kα radiation, λ = 0.71073 Å |
a = 6.6616 (12) Å | Cell parameters from 2807 reflections |
b = 4.8577 (10) Å | θ = 2.1–30.6° |
c = 19.099 (4) Å | µ = 0.10 mm−1 |
β = 99.821 (6)° | T = 296 K |
V = 609.0 (2) Å3 | Block, red |
Z = 2 | 0.35 × 0.30 × 0.25 mm |
F(000) = 264 |
Bruker Kappa APEXII CCD area-detector diffractometer | 1859 independent reflections |
Radiation source: fine-focus sealed tube | 1318 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.052 |
ω and φ scans | θmax = 25.0°, θmin = 3.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −7→7 |
Tmin = 0.963, Tmax = 0.979 | k = −5→5 |
7057 measured reflections | l = −20→22 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.055 | w = 1/[σ2(Fo2) + 0.2695P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.080 | (Δ/σ)max < 0.001 |
S = 1.16 | Δρmax = 0.21 e Å−3 |
1859 reflections | Δρmin = −0.17 e Å−3 |
172 parameters | Absolute structure: Flack x parameter determined using 484 quotients [(I+) - (I-)]/[(I+) + (I-)] (Parsons et al., 2013) |
2 restraints | Absolute structure parameter: 0.2 (7) |
Primary atom site location: structure-invariant direct methods |
C15H10FNO2 | V = 609.0 (2) Å3 |
Mr = 255.24 | Z = 2 |
Monoclinic, Pc | Mo Kα radiation |
a = 6.6616 (12) Å | µ = 0.10 mm−1 |
b = 4.8577 (10) Å | T = 296 K |
c = 19.099 (4) Å | 0.35 × 0.30 × 0.25 mm |
β = 99.821 (6)° |
Bruker Kappa APEXII CCD area-detector diffractometer | 1859 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 1318 reflections with I > 2σ(I) |
Tmin = 0.963, Tmax = 0.979 | Rint = 0.052 |
7057 measured reflections |
R[F2 > 2σ(F2)] = 0.055 | H-atom parameters constrained |
wR(F2) = 0.080 | Δρmax = 0.21 e Å−3 |
S = 1.16 | Δρmin = −0.17 e Å−3 |
1859 reflections | Absolute structure: Flack x parameter determined using 484 quotients [(I+) - (I-)]/[(I+) + (I-)] (Parsons et al., 2013) |
172 parameters | Absolute structure parameter: 0.2 (7) |
2 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
F1 | 0.5155 (5) | 0.9209 (8) | 0.93948 (19) | 0.0784 (12) | |
N1 | 0.6635 (6) | 0.2072 (9) | 1.1660 (2) | 0.0408 (12) | |
O1 | 0.4421 (7) | −0.1119 (9) | 1.2022 (3) | 0.0751 (14) | |
O2 | 0.1608 (6) | 0.1218 (9) | 1.0805 (2) | 0.0722 (13) | |
C1 | 0.6498 (7) | 0.4013 (11) | 1.1103 (3) | 0.0353 (14) | |
C2 | 0.7988 (8) | 0.5760 (11) | 1.0944 (3) | 0.0419 (15) | |
H2 | 0.9282 | 0.5779 | 1.1219 | 0.050* | |
C3 | 0.7496 (9) | 0.7494 (12) | 1.0360 (3) | 0.0496 (17) | |
H3 | 0.8478 | 0.8678 | 1.0238 | 0.060* | |
C4 | 0.5574 (9) | 0.7473 (13) | 0.9962 (3) | 0.0494 (16) | |
C5 | 0.4064 (8) | 0.5751 (12) | 1.0110 (3) | 0.0480 (16) | |
H5 | 0.2772 | 0.5755 | 0.9834 | 0.058* | |
C6 | 0.4546 (8) | 0.4019 (11) | 1.0686 (3) | 0.0385 (14) | |
C7 | 0.3358 (9) | 0.1944 (12) | 1.0989 (3) | 0.0486 (16) | |
C8 | 0.4836 (9) | 0.0692 (12) | 1.1633 (3) | 0.0515 (17) | |
C9 | 0.8499 (8) | 0.1397 (11) | 1.2160 (3) | 0.0467 (15) | |
H9A | 0.9603 | 0.1122 | 1.1895 | 0.056* | |
H9B | 0.8293 | −0.0322 | 1.2396 | 0.056* | |
C10 | 0.9120 (9) | 0.3594 (10) | 1.2717 (3) | 0.0418 (14) | |
C11 | 0.7832 (9) | 0.4374 (12) | 1.3171 (3) | 0.0541 (17) | |
H11 | 0.6549 | 0.3573 | 1.3128 | 0.065* | |
C12 | 0.8420 (11) | 0.6342 (14) | 1.3693 (3) | 0.065 (2) | |
H12 | 0.7532 | 0.6861 | 1.3996 | 0.078* | |
C13 | 1.0316 (12) | 0.7520 (14) | 1.3761 (3) | 0.069 (2) | |
H13 | 1.0714 | 0.8829 | 1.4112 | 0.082* | |
C14 | 1.1626 (10) | 0.6773 (13) | 1.3312 (4) | 0.0644 (19) | |
H14 | 1.2907 | 0.7582 | 1.3356 | 0.077* | |
C15 | 1.1029 (9) | 0.4804 (12) | 1.2793 (3) | 0.0521 (17) | |
H15 | 1.1921 | 0.4288 | 1.2492 | 0.062* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.090 (3) | 0.075 (3) | 0.065 (2) | 0.003 (2) | 0.000 (2) | 0.023 (2) |
N1 | 0.037 (3) | 0.034 (3) | 0.051 (3) | −0.003 (2) | 0.007 (3) | 0.002 (3) |
O1 | 0.077 (3) | 0.069 (3) | 0.085 (4) | −0.012 (3) | 0.031 (3) | 0.018 (3) |
O2 | 0.042 (3) | 0.079 (3) | 0.098 (4) | −0.014 (2) | 0.018 (2) | −0.012 (3) |
C1 | 0.036 (4) | 0.029 (3) | 0.042 (4) | −0.004 (3) | 0.010 (3) | −0.005 (3) |
C2 | 0.036 (4) | 0.044 (4) | 0.045 (4) | 0.002 (3) | 0.001 (3) | −0.006 (3) |
C3 | 0.049 (4) | 0.045 (4) | 0.056 (5) | −0.009 (3) | 0.013 (4) | −0.001 (3) |
C4 | 0.059 (5) | 0.041 (4) | 0.046 (4) | 0.004 (3) | 0.003 (3) | 0.003 (3) |
C5 | 0.042 (4) | 0.053 (5) | 0.046 (4) | 0.005 (3) | −0.002 (3) | −0.008 (4) |
C6 | 0.034 (4) | 0.038 (4) | 0.044 (4) | −0.003 (3) | 0.007 (3) | −0.010 (3) |
C7 | 0.034 (4) | 0.056 (4) | 0.060 (4) | −0.001 (3) | 0.019 (3) | −0.014 (3) |
C8 | 0.057 (4) | 0.046 (4) | 0.055 (5) | −0.003 (3) | 0.020 (3) | −0.001 (4) |
C9 | 0.049 (4) | 0.039 (4) | 0.052 (4) | 0.006 (3) | 0.008 (3) | 0.004 (3) |
C10 | 0.051 (4) | 0.033 (3) | 0.041 (4) | 0.008 (3) | 0.005 (3) | 0.008 (3) |
C11 | 0.057 (4) | 0.050 (4) | 0.057 (4) | 0.003 (3) | 0.014 (3) | 0.003 (4) |
C12 | 0.087 (6) | 0.060 (5) | 0.051 (5) | 0.017 (4) | 0.018 (4) | −0.003 (4) |
C13 | 0.095 (6) | 0.055 (4) | 0.048 (5) | 0.009 (4) | −0.011 (4) | −0.004 (4) |
C14 | 0.059 (5) | 0.065 (5) | 0.063 (5) | −0.012 (4) | −0.007 (4) | −0.001 (4) |
C15 | 0.045 (4) | 0.059 (4) | 0.051 (4) | 0.008 (3) | 0.004 (3) | −0.003 (4) |
F1—C4 | 1.364 (6) | C7—C8 | 1.563 (8) |
N1—C8 | 1.367 (7) | C9—C10 | 1.514 (7) |
N1—C1 | 1.413 (6) | C9—H9A | 0.9700 |
N1—C9 | 1.469 (6) | C9—H9B | 0.9700 |
O1—C8 | 1.213 (6) | C10—C11 | 1.373 (7) |
O2—C7 | 1.211 (6) | C10—C15 | 1.386 (8) |
C1—C2 | 1.378 (6) | C11—C12 | 1.389 (8) |
C1—C6 | 1.404 (7) | C11—H11 | 0.9300 |
C2—C3 | 1.392 (8) | C12—C13 | 1.372 (9) |
C2—H2 | 0.9300 | C12—H12 | 0.9300 |
C3—C4 | 1.373 (7) | C13—C14 | 1.373 (9) |
C3—H3 | 0.9300 | C13—H13 | 0.9300 |
C4—C5 | 1.374 (7) | C14—C15 | 1.386 (8) |
C5—C6 | 1.378 (7) | C14—H14 | 0.9300 |
C5—H5 | 0.9300 | C15—H15 | 0.9300 |
C6—C7 | 1.461 (8) | ||
C8—N1—C1 | 110.8 (4) | N1—C8—C7 | 105.6 (5) |
C8—N1—C9 | 123.6 (5) | N1—C9—C10 | 113.5 (4) |
C1—N1—C9 | 125.3 (4) | N1—C9—H9A | 108.9 |
C2—C1—C6 | 120.4 (5) | C10—C9—H9A | 108.9 |
C2—C1—N1 | 128.3 (5) | N1—C9—H9B | 108.9 |
C6—C1—N1 | 111.3 (4) | C10—C9—H9B | 108.9 |
C1—C2—C3 | 118.0 (5) | H9A—C9—H9B | 107.7 |
C1—C2—H2 | 121.0 | C11—C10—C15 | 118.5 (6) |
C3—C2—H2 | 121.0 | C11—C10—C9 | 120.9 (5) |
C4—C3—C2 | 120.6 (5) | C15—C10—C9 | 120.6 (5) |
C4—C3—H3 | 119.7 | C10—C11—C12 | 120.9 (6) |
C2—C3—H3 | 119.7 | C10—C11—H11 | 119.6 |
F1—C4—C3 | 118.7 (6) | C12—C11—H11 | 119.6 |
F1—C4—C5 | 118.8 (6) | C13—C12—C11 | 119.8 (6) |
C3—C4—C5 | 122.5 (6) | C13—C12—H12 | 120.1 |
C4—C5—C6 | 117.1 (5) | C11—C12—H12 | 120.1 |
C4—C5—H5 | 121.4 | C12—C13—C14 | 120.3 (6) |
C6—C5—H5 | 121.4 | C12—C13—H13 | 119.9 |
C5—C6—C1 | 121.4 (5) | C14—C13—H13 | 119.9 |
C5—C6—C7 | 132.0 (5) | C13—C14—C15 | 119.6 (6) |
C1—C6—C7 | 106.6 (5) | C13—C14—H14 | 120.2 |
O2—C7—C6 | 130.2 (6) | C15—C14—H14 | 120.2 |
O2—C7—C8 | 124.1 (6) | C14—C15—C10 | 120.9 (6) |
C6—C7—C8 | 105.6 (5) | C14—C15—H15 | 119.5 |
O1—C8—N1 | 128.5 (6) | C10—C15—H15 | 119.5 |
O1—C8—C7 | 125.9 (6) | ||
C8—N1—C1—C2 | −178.9 (5) | C1—N1—C8—O1 | 179.2 (6) |
C9—N1—C1—C2 | −4.8 (8) | C9—N1—C8—O1 | 4.9 (9) |
C8—N1—C1—C6 | 1.1 (6) | C1—N1—C8—C7 | −1.2 (5) |
C9—N1—C1—C6 | 175.2 (5) | C9—N1—C8—C7 | −175.4 (4) |
C6—C1—C2—C3 | −0.4 (7) | O2—C7—C8—O1 | −0.1 (9) |
N1—C1—C2—C3 | 179.6 (5) | C6—C7—C8—O1 | −179.5 (6) |
C1—C2—C3—C4 | 0.7 (8) | O2—C7—C8—N1 | −179.8 (5) |
C2—C3—C4—F1 | 179.9 (5) | C6—C7—C8—N1 | 0.9 (5) |
C2—C3—C4—C5 | −0.7 (9) | C8—N1—C9—C10 | −111.8 (6) |
F1—C4—C5—C6 | 179.7 (5) | C1—N1—C9—C10 | 74.8 (6) |
C3—C4—C5—C6 | 0.4 (8) | N1—C9—C10—C11 | 59.0 (7) |
C4—C5—C6—C1 | −0.1 (8) | N1—C9—C10—C15 | −123.0 (5) |
C4—C5—C6—C7 | −179.3 (6) | C15—C10—C11—C12 | 0.4 (8) |
C2—C1—C6—C5 | 0.1 (7) | C9—C10—C11—C12 | 178.4 (5) |
N1—C1—C6—C5 | −179.9 (5) | C10—C11—C12—C13 | −0.3 (9) |
C2—C1—C6—C7 | 179.5 (5) | C11—C12—C13—C14 | 0.4 (10) |
N1—C1—C6—C7 | −0.5 (6) | C12—C13—C14—C15 | −0.5 (9) |
C5—C6—C7—O2 | −0.2 (10) | C13—C14—C15—C10 | 0.5 (9) |
C1—C6—C7—O2 | −179.5 (6) | C11—C10—C15—C14 | −0.4 (8) |
C5—C6—C7—C8 | 179.1 (6) | C9—C10—C15—C14 | −178.5 (5) |
C1—C6—C7—C8 | −0.2 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3···O2i | 0.93 | 2.50 | 3.272 (7) | 140 |
C9—H9A···O2ii | 0.97 | 2.66 | 3.580 (7) | 159 |
Symmetry codes: (i) x+1, y+1, z; (ii) x+1, y, z. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | C18H17NO5 | C15H10FNO2 |
Mr | 327.32 | 255.24 |
Crystal system, space group | Orthorhombic, P212121 | Monoclinic, Pc |
Temperature (K) | 293 | 296 |
a, b, c (Å) | 7.548 (5), 13.066 (5), 15.815 (5) | 6.6616 (12), 4.8577 (10), 19.099 (4) |
α, β, γ (°) | 90, 90, 90 | 90, 99.821 (6), 90 |
V (Å3) | 1559.7 (13) | 609.0 (2) |
Z | 4 | 2 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.10 | 0.10 |
Crystal size (mm) | 0.20 × 0.15 × 0.10 | 0.35 × 0.30 × 0.25 |
Data collection | ||
Diffractometer | Bruker Kappa APEXII CCD area-detector diffractometer | Bruker Kappa APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.980, 0.990 | 0.963, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8685, 3720, 3183 | 7057, 1859, 1318 |
Rint | 0.019 | 0.052 |
(sin θ/λ)max (Å−1) | 0.670 | 0.594 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.102, 1.02 | 0.055, 0.080, 1.16 |
No. of reflections | 3720 | 1859 |
No. of parameters | 220 | 172 |
No. of restraints | 0 | 2 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.17, −0.31 | 0.21, −0.17 |
Absolute structure | Flack x parameter determined using 1221 quotients [(I+) - (I-)]/[(I+) + (I-)] (Parsons et al., 2013) | Flack x parameter determined using 484 quotients [(I+) - (I-)]/[(I+) + (I-)] (Parsons et al., 2013) |
Absolute structure parameter | −0.2 (3) | 0.2 (7) |
Computer programs: SMART (Bruker, 2008), SMART (Bruker, 2004), SAINT (Bruker, 2008), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL2013 (Sheldrick, 2015), QMOL (Gans & Shalloway, 2001), Mercury (Macrae et al., 2008), WinGX publication routines (Farrugia, 2012) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C17—H17B···O5 | 0.96 | 2.38 | 2.924 (3) | 115.7 |
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3···O2i | 0.93 | 2.50 | 3.272 (7) | 140.0 |
C9—H9A···O2ii | 0.97 | 2.66 | 3.580 (7) | 158.9 |
Symmetry codes: (i) x+1, y+1, z; (ii) x+1, y, z. |
(I) | (II) | |
C8—N1—C1 | 109.94 (17) | 110.8 (4) |
C8—N1—C9 | 124.00 (18) | 123.6 (5) |
C1—N1—C9 | 126.02 (18) | 125.3 (4) |
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