Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270101010757/gd1159sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270101010757/gd1159Iasup2.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270101010757/gd1159IIsup3.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270101010757/gd1159IIIasup4.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270101010757/gd1159IIIbsup5.hkl |
CCDC references: 174829; 174830; 174831; 174832
Compound (Ia) was prepared by adding 2,3-bis(2-pyridyl)quinoxaline (5.7 g, 20 mmol; Goodwin & Lions, 1959) to water (450 ml). This solution was heated to 368 K with stirring. KMnO4 (25 g, 0.16 mol) was then added in small portions over a period of 2 h. The reaction mixture was stirred for 1 h and the temperature reduced to 348 K. Ethanol (10 ml) was added to remove the excess KMnO4. The reaction mixture was filtered to give a colourless filtrate, which was concentrated to 20 ml and acidified with 4M HCl until a white precipitate formed. The crude product was dissolved in water (15 ml) and the solution was acidified again with concentrated HCl to yield a white solid. The product, (Ia), was filtered off, washed with ethanol, recrystallized from water and dried under vacuum (yield 3.9 g, 60.5%; m.p. 533–534 K). Analysis calculated for C16H10N4O4: C 59.6, H 3.1, N 17.4%; found: C 59.5, H 3.0, N 17.3%. Selected IR bands (KBr, cm-1): 3426 (br, m), 3083 (w), 3026 (w), 2922 (w), 2854 (w), 1706 (m), 1653 (m), 1602 (versus), 1488 (s), 1433 (m), 1337 (m), 1268 (s), 1148 (s), 1115 (s), 1083 (s), 1040 (m), 943 (m), 865 (m), 820 (w), 793 (versus), 743 (s); 1H NMR (D2O, 200 MHz, δ, p.p.m.): 8.84–8.82 (m, 2H, PyH), 8.46–8.37 (m, 2H, PyH), 8.08–7.99 (m, 4H, PyH); 13C NMR (D2O, 50 MHz, δ, p.p.m): 170.2, 150.2, 148.3, 148.1, 147.8, 147.4, 130.6, 130.3; DCI-MS (DCI is?) (m/z): 323 (MH+, 4), 322 (M+, 2). Compound (II) was obtained by dissolving (Ia) in a 1M HCl aqueous solution, which on slow evaporaton gave colourless rod-like crystals. Compound (IIIa) was obtained by dissolving (Ia) in a 1M HClO4 aqueous solution, which on slow evaporation yielded pale-yellow block-like crystals. Compound (IIIb) was obtained by dissolving (Ia) in an aqueous solution of Ag[PF6]. On slow evaporation, pale-yellow block-like crystals were obtained.
The H atoms were located from difference Fourier maps and refined isotropically. The pyNH and CO2H H atoms were all located from difference maps and refined isotropically. For compounds (Ia) and (II), the hydrogen bonds involving these H atoms are of the unusual symmetric type, hence the long N—H, H···N, O—H and O···H distances. This type of hydrogen bond, N—H···N for example, with identical bond distances and angles, has been observed previously and analysed theoretically by Bock et al. (1992). In compound (II), water molecules O2W and O3W are the same atom but disordered over two sites, with refined occupancies of 0.62 and 0.38. In compound (IIIa), the perchlorate anion possesses C2 symmetry and the O atoms, O12, O13 and O14, are disordered. In some cases, the water H atoms could be located from difference Fourier maps and were refined isotropically. When the refinement was unstable in the final cycles of refinement they were held fixed, as for water O4W in (II) and O2W in (IIIa) and (IIIb) (Uiso = 0.1 Å2).
Data collection: STADI4 (Stoe & Cie, 1997) for (Ia); EXPOSE (Stoe & Cie, 2000) for (II), (IIIa), (IIIb). Cell refinement: STADI4 for (Ia); CELL (Stoe & Cie, 2000) for (II), (IIIa), (IIIb). Data reduction: X-RED in STADI4 for (Ia); INTEGRATE (Stoe & Cie, 2000) for (II), (IIIb); X-RED in STADI4 (Stoe & Cie, 1997) for (IIIa). For all compounds, program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON99 (Spek, 1990); software used to prepare material for publication: SHELXL97.
C16H10N4O4 | F(000) = 664 |
Mr = 322.28 | Dx = 1.599 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 10.477 (1) Å | Cell parameters from 20 reflections |
b = 13.523 (2) Å | θ = 14–19° |
c = 10.058 (1) Å | µ = 0.12 mm−1 |
β = 110.07 (1)° | T = 293 K |
V = 1338.5 (3) Å3 | Plate, pale yellow |
Z = 4 | 0.46 × 0.30 × 0.11 mm |
Stoe four-circle diffractometer | Rint = 0.039 |
Radiation source: fine-focus sealed tube | θmax = 25.0°, θmin = 2.1° |
Graphite monochromator | h = 0→12 |
2θ/ω scans | k = −16→0 |
2356 measured reflections | l = −11→11 |
2336 independent reflections | 3 standard reflections every 60 min |
1227 reflections with I > 2σ(I) | intensity decay: <2% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | All H-atom parameters refined |
wR(F2) = 0.092 | w = 1/[σ2(Fo2) + (0.029P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.90 | (Δ/σ)max < 0.001 |
2336 reflections | Δρmax = 0.17 e Å−3 |
258 parameters | Δρmin = −0.20 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.014 (2) |
C16H10N4O4 | V = 1338.5 (3) Å3 |
Mr = 322.28 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.477 (1) Å | µ = 0.12 mm−1 |
b = 13.523 (2) Å | T = 293 K |
c = 10.058 (1) Å | 0.46 × 0.30 × 0.11 mm |
β = 110.07 (1)° |
Stoe four-circle diffractometer | Rint = 0.039 |
2356 measured reflections | 3 standard reflections every 60 min |
2336 independent reflections | intensity decay: <2% |
1227 reflections with I > 2σ(I) |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.092 | All H-atom parameters refined |
S = 0.90 | Δρmax = 0.17 e Å−3 |
2336 reflections | Δρmin = −0.20 e Å−3 |
258 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.0606 (2) | 0.16027 (19) | 0.7237 (2) | 0.0590 (7) | |
O2 | −0.1543 (2) | 0.26898 (18) | 0.5480 (2) | 0.0416 (6) | |
O3 | −0.2703 (2) | 0.07332 (17) | 0.3870 (2) | 0.0471 (7) | |
O4 | −0.26759 (19) | 0.13092 (17) | 0.1812 (2) | 0.0417 (6) | |
N1 | 0.1355 (2) | 0.16093 (19) | 0.5751 (2) | 0.0360 (7) | |
N2 | 0.0163 (2) | 0.10376 (19) | 0.2992 (2) | 0.0350 (7) | |
N3 | 0.4589 (2) | 0.12789 (19) | 0.5341 (2) | 0.0374 (7) | |
N4 | 0.3489 (2) | 0.09486 (19) | 0.2720 (3) | 0.0355 (7) | |
C1 | 0.0013 (3) | 0.1570 (2) | 0.5164 (3) | 0.0334 (8) | |
C2 | −0.0600 (3) | 0.1244 (2) | 0.3771 (3) | 0.0319 (8) | |
C3 | 0.1531 (3) | 0.1131 (2) | 0.3540 (3) | 0.0291 (8) | |
C4 | 0.2148 (3) | 0.1377 (2) | 0.4983 (3) | 0.0309 (8) | |
C5 | 0.3616 (3) | 0.1443 (2) | 0.5897 (3) | 0.0312 (7) | |
C6 | 0.3982 (3) | 0.1669 (3) | 0.7323 (3) | 0.0415 (9) | |
C7 | 0.5345 (3) | 0.1726 (3) | 0.8139 (4) | 0.0449 (9) | |
C8 | 0.6322 (3) | 0.1562 (3) | 0.7545 (3) | 0.0415 (9) | |
C9 | 0.5914 (3) | 0.1339 (3) | 0.6132 (3) | 0.0396 (9) | |
C10 | 0.2126 (3) | 0.0967 (2) | 0.2395 (3) | 0.0328 (8) | |
C11 | 0.1310 (3) | 0.0839 (3) | 0.0996 (3) | 0.0427 (9) | |
C12 | 0.1874 (3) | 0.0685 (3) | −0.0032 (4) | 0.0474 (10) | |
C13 | 0.3273 (3) | 0.0655 (3) | 0.0342 (3) | 0.0429 (9) | |
C14 | 0.4054 (3) | 0.0804 (3) | 0.1723 (3) | 0.0420 (9) | |
C15 | −0.0765 (3) | 0.1949 (3) | 0.6078 (3) | 0.0383 (9) | |
C16 | −0.2119 (3) | 0.1083 (2) | 0.3103 (3) | 0.0335 (8) | |
H2O | −0.200 (4) | 0.315 (3) | 0.623 (4) | 0.095 (13)* | |
H3N | 0.419 (3) | 0.112 (2) | 0.407 (3) | 0.071 (11)* | |
H6 | 0.326 (3) | 0.171 (2) | 0.768 (3) | 0.044 (9)* | |
H7 | 0.561 (2) | 0.1891 (19) | 0.912 (3) | 0.028 (8)* | |
H8 | 0.723 (3) | 0.1572 (19) | 0.805 (3) | 0.025 (8)* | |
H9 | 0.659 (3) | 0.120 (2) | 0.560 (3) | 0.059 (10)* | |
H11 | 0.034 (3) | 0.087 (2) | 0.074 (3) | 0.056 (10)* | |
H12 | 0.127 (3) | 0.059 (2) | −0.104 (3) | 0.063 (10)* | |
H13 | 0.368 (3) | 0.052 (2) | −0.035 (3) | 0.039 (9)* | |
H14 | 0.515 (3) | 0.076 (2) | 0.207 (3) | 0.065 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0600 (16) | 0.088 (2) | 0.0356 (14) | 0.0218 (15) | 0.0250 (12) | 0.0141 (14) |
O2 | 0.0344 (13) | 0.0594 (17) | 0.0292 (13) | 0.0129 (12) | 0.0088 (11) | −0.0012 (12) |
O3 | 0.0373 (13) | 0.0647 (18) | 0.0432 (13) | −0.0069 (12) | 0.0188 (11) | 0.0060 (13) |
O4 | 0.0267 (12) | 0.0652 (17) | 0.0311 (13) | −0.0086 (11) | 0.0073 (10) | 0.0025 (12) |
N1 | 0.0257 (15) | 0.0509 (19) | 0.0301 (15) | 0.0025 (13) | 0.0079 (12) | 0.0009 (13) |
N2 | 0.0279 (15) | 0.0460 (19) | 0.0315 (14) | 0.0005 (12) | 0.0109 (12) | −0.0058 (13) |
N3 | 0.0264 (16) | 0.057 (2) | 0.0270 (14) | −0.0026 (13) | 0.0068 (12) | −0.0029 (14) |
N4 | 0.0258 (15) | 0.0508 (19) | 0.0292 (15) | −0.0008 (13) | 0.0086 (12) | −0.0044 (13) |
C1 | 0.0287 (17) | 0.044 (2) | 0.0300 (17) | 0.0042 (16) | 0.0130 (14) | 0.0040 (16) |
C2 | 0.0282 (17) | 0.035 (2) | 0.0336 (18) | 0.0023 (15) | 0.0127 (14) | 0.0007 (15) |
C3 | 0.0257 (17) | 0.033 (2) | 0.0292 (17) | −0.0005 (14) | 0.0098 (14) | −0.0034 (15) |
C4 | 0.0229 (16) | 0.036 (2) | 0.0336 (17) | 0.0007 (14) | 0.0092 (14) | 0.0017 (15) |
C5 | 0.0289 (18) | 0.034 (2) | 0.0304 (17) | −0.0001 (15) | 0.0094 (14) | 0.0016 (15) |
C6 | 0.033 (2) | 0.057 (3) | 0.035 (2) | 0.0019 (17) | 0.0117 (17) | 0.0005 (18) |
C7 | 0.039 (2) | 0.062 (3) | 0.0295 (19) | 0.0001 (18) | 0.0064 (17) | −0.0061 (19) |
C8 | 0.0265 (19) | 0.054 (2) | 0.037 (2) | −0.0026 (18) | 0.0015 (16) | 0.0003 (18) |
C9 | 0.0227 (18) | 0.056 (3) | 0.0390 (19) | −0.0007 (16) | 0.0095 (16) | 0.0018 (18) |
C10 | 0.0275 (18) | 0.040 (2) | 0.0319 (18) | 0.0013 (15) | 0.0112 (14) | 0.0005 (16) |
C11 | 0.0285 (19) | 0.065 (3) | 0.0338 (19) | 0.0040 (18) | 0.0101 (17) | −0.0053 (17) |
C12 | 0.035 (2) | 0.074 (3) | 0.032 (2) | 0.0027 (19) | 0.0102 (17) | −0.0065 (19) |
C13 | 0.045 (2) | 0.057 (3) | 0.034 (2) | 0.0038 (18) | 0.0224 (18) | −0.0040 (18) |
C14 | 0.0323 (19) | 0.058 (3) | 0.041 (2) | 0.0000 (18) | 0.0197 (17) | −0.0051 (18) |
C15 | 0.0217 (18) | 0.057 (3) | 0.0338 (19) | −0.0012 (17) | 0.0067 (15) | −0.0041 (18) |
C16 | 0.0276 (17) | 0.038 (2) | 0.0385 (19) | 0.0002 (15) | 0.0163 (16) | −0.0019 (16) |
O1—C15 | 1.214 (3) | C3—C10 | 1.502 (4) |
O2—C15 | 1.301 (4) | C4—C5 | 1.499 (4) |
O2—H2O | 1.20 (4) | C5—C6 | 1.386 (4) |
O3—C16 | 1.231 (3) | C6—C7 | 1.383 (4) |
O4—C16 | 1.265 (3) | C6—H6 | 0.94 (3) |
N1—C1 | 1.326 (4) | C7—C8 | 1.368 (4) |
N1—C4 | 1.352 (3) | C7—H7 | 0.96 (2) |
N2—C2 | 1.327 (3) | C8—C9 | 1.370 (4) |
N2—C3 | 1.354 (3) | C8—H8 | 0.91 (2) |
N3—C5 | 1.338 (3) | C9—H9 | 1.03 (3) |
N3—C9 | 1.345 (3) | C10—C11 | 1.384 (4) |
N3—H3N | 1.22 (3) | C11—C12 | 1.372 (4) |
N4—C14 | 1.342 (3) | C11—H11 | 0.95 (3) |
N4—C10 | 1.351 (3) | C12—C13 | 1.383 (4) |
N4—H3N | 1.32 (3) | C12—H12 | 1.00 (3) |
C1—C2 | 1.398 (4) | C13—C14 | 1.364 (4) |
C1—C15 | 1.512 (4) | C13—H13 | 0.95 (3) |
C2—C16 | 1.516 (4) | C14—H14 | 1.08 (3) |
C3—C4 | 1.411 (4) | ||
C15—O2—H2O | 115.4 (17) | C6—C7—H7 | 119.8 (15) |
C1—N1—C4 | 120.2 (2) | C7—C8—C9 | 118.4 (3) |
C2—N2—C3 | 120.6 (2) | C7—C8—H8 | 123.2 (16) |
C5—N3—C9 | 121.5 (3) | C9—C8—H8 | 118.4 (16) |
C5—N3—H3N | 115.7 (14) | N3—C9—C8 | 121.2 (3) |
C9—N3—H3N | 122.7 (14) | N3—C9—H9 | 115.6 (16) |
C14—N4—C10 | 121.5 (3) | C8—C9—H9 | 123.2 (16) |
C14—N4—H3N | 123.8 (13) | N4—C10—C11 | 118.5 (3) |
C10—N4—H3N | 114.6 (13) | N4—C10—C3 | 120.0 (2) |
N1—C1—C2 | 120.7 (3) | C11—C10—C3 | 121.6 (3) |
N1—C1—C15 | 115.3 (3) | C12—C11—C10 | 120.6 (3) |
C2—C1—C15 | 123.9 (3) | C12—C11—H11 | 119.6 (17) |
N2—C2—C1 | 119.7 (3) | C10—C11—H11 | 119.8 (17) |
N2—C2—C16 | 117.5 (3) | C11—C12—C13 | 119.4 (3) |
C1—C2—C16 | 122.8 (3) | C11—C12—H12 | 119.6 (17) |
N2—C3—C4 | 119.2 (3) | C13—C12—H12 | 121.1 (17) |
N2—C3—C10 | 109.5 (2) | C14—C13—C12 | 118.8 (3) |
C4—C3—C10 | 131.2 (2) | C14—C13—H13 | 120.6 (16) |
N1—C4—C3 | 119.2 (2) | C12—C13—H13 | 120.6 (16) |
N1—C4—C5 | 109.8 (2) | N4—C14—C13 | 121.2 (3) |
C3—C4—C5 | 131.0 (3) | N4—C14—H14 | 117.3 (15) |
N3—C5—C6 | 119.3 (3) | C13—C14—H14 | 121.4 (15) |
N3—C5—C4 | 120.1 (2) | O1—C15—O2 | 126.8 (3) |
C6—C5—C4 | 120.6 (3) | O1—C15—C1 | 121.9 (3) |
C7—C6—C5 | 119.2 (3) | O2—C15—C1 | 111.3 (3) |
C7—C6—H6 | 125.0 (17) | O3—C16—O4 | 125.7 (3) |
C5—C6—H6 | 115.5 (17) | O3—C16—C2 | 116.6 (3) |
C8—C7—C6 | 120.5 (3) | O4—C16—C2 | 117.7 (3) |
C8—C7—H7 | 119.7 (15) | ||
C4—N1—C1—C2 | 3.1 (5) | C5—C6—C7—C8 | 0.0 (6) |
C4—N1—C1—C15 | −173.8 (3) | C6—C7—C8—C9 | −0.1 (6) |
C3—N2—C2—C1 | 0.7 (4) | C5—N3—C9—C8 | 0.6 (5) |
C3—N2—C2—C16 | −177.6 (3) | C7—C8—C9—N3 | −0.2 (5) |
N1—C1—C2—N2 | −4.8 (5) | C14—N4—C10—C11 | −0.5 (5) |
C15—C1—C2—N2 | 171.8 (3) | C14—N4—C10—C3 | 180.0 (3) |
N1—C1—C2—C16 | 173.4 (3) | N2—C3—C10—N4 | −174.9 (3) |
C15—C1—C2—C16 | −10.0 (5) | C4—C3—C10—N4 | 7.0 (5) |
C2—N2—C3—C4 | 4.9 (4) | N2—C3—C10—C11 | 5.6 (4) |
C2—N2—C3—C10 | −173.5 (3) | C4—C3—C10—C11 | −172.5 (3) |
C1—N1—C4—C3 | 2.5 (4) | N4—C10—C11—C12 | 0.8 (5) |
C1—N1—C4—C5 | −178.0 (3) | C3—C10—C11—C12 | −179.6 (3) |
N2—C3—C4—N1 | −6.5 (4) | C10—C11—C12—C13 | 0.2 (6) |
C10—C3—C4—N1 | 171.4 (3) | C11—C12—C13—C14 | −1.5 (6) |
N2—C3—C4—C5 | 174.1 (3) | C10—N4—C14—C13 | −0.9 (5) |
C10—C3—C4—C5 | −8.0 (6) | C12—C13—C14—N4 | 1.9 (5) |
C9—N3—C5—C6 | −0.7 (5) | N1—C1—C15—O1 | −57.6 (4) |
C9—N3—C5—C4 | 179.6 (3) | C2—C1—C15—O1 | 125.6 (4) |
N1—C4—C5—N3 | −177.5 (3) | N1—C1—C15—O2 | 119.9 (3) |
C3—C4—C5—N3 | 2.0 (5) | C2—C1—C15—O2 | −56.8 (4) |
N1—C4—C5—C6 | 2.8 (4) | N2—C2—C16—O3 | 140.5 (3) |
C3—C4—C5—C6 | −177.7 (3) | C1—C2—C16—O3 | −37.8 (5) |
N3—C5—C6—C7 | 0.4 (5) | N2—C2—C16—O4 | −39.0 (4) |
C4—C5—C6—C7 | −179.9 (3) | C1—C2—C16—O4 | 142.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O4i | 1.20 (4) | 1.29 (4) | 2.475 (3) | 169 (3) |
N3—H3N···N4 | 1.22 (3) | 1.32 (3) | 2.528 (3) | 167 (3) |
Symmetry code: (i) x, −y+1/2, z+1/2. |
C16H11N4O4+·Cl−·2.25H2O | F(000) = 1652 |
Mr = 399.27 | Dx = 1.464 Mg m−3 |
Monoclinic, I2/a | Mo Kα radiation, λ = 0.71073 Å |
a = 19.5883 (17) Å | Cell parameters from 5000 reflections |
b = 8.0623 (5) Å | θ = 2.1–25.9° |
c = 22.936 (2) Å | µ = 0.26 mm−1 |
β = 90.559 (11)° | T = 293 K |
V = 3622.0 (5) Å3 | Rod, colourless |
Z = 8 | 0.5 × 0.2 × 0.1 mm |
Stoe IPDS diffractometer | 1943 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.055 |
Graphite monochromator | θmax = 25.9°, θmin = 2.1° |
Detector resolution: 0.81Å pixels mm-1 | h = −24→23 |
ϕ oscillation scans | k = −9→9 |
13718 measured reflections | l = −28→28 |
3488 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.093 | All H-atom parameters refined |
S = 0.82 | w = 1/[σ2(Fo2) + (0.05P)2] where P = (Fo2 + 2Fc2)/3 |
3488 reflections | (Δ/σ)max = 0.027 |
327 parameters | Δρmax = 0.63 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C16H11N4O4+·Cl−·2.25H2O | V = 3622.0 (5) Å3 |
Mr = 399.27 | Z = 8 |
Monoclinic, I2/a | Mo Kα radiation |
a = 19.5883 (17) Å | µ = 0.26 mm−1 |
b = 8.0623 (5) Å | T = 293 K |
c = 22.936 (2) Å | 0.5 × 0.2 × 0.1 mm |
β = 90.559 (11)° |
Stoe IPDS diffractometer | 1943 reflections with I > 2σ(I) |
13718 measured reflections | Rint = 0.055 |
3488 independent reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.093 | All H-atom parameters refined |
S = 0.82 | Δρmax = 0.63 e Å−3 |
3488 reflections | Δρmin = −0.26 e Å−3 |
327 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.00022 (9) | 0.1926 (2) | 0.33297 (7) | 0.0504 (5) | |
O2 | −0.04931 (9) | 0.4384 (2) | 0.31389 (8) | 0.0468 (4) | |
H2O | −0.0711 (17) | 0.427 (4) | 0.3513 (16) | 0.098 (11)* | |
O3 | −0.12559 (9) | 0.1414 (3) | 0.14811 (8) | 0.0677 (6) | |
O4 | −0.12505 (7) | 0.1999 (2) | 0.24294 (7) | 0.0445 (4) | |
N1 | 0.07729 (9) | 0.3448 (2) | 0.23364 (8) | 0.0335 (5) | |
N2 | −0.00305 (9) | 0.2937 (2) | 0.13643 (8) | 0.0332 (4) | |
N3 | 0.20722 (9) | 0.4782 (3) | 0.21689 (8) | 0.0362 (5) | |
H3N | 0.1784 (14) | 0.552 (4) | 0.2371 (11) | 0.059 (8)* | |
N4 | 0.04464 (11) | 0.2977 (3) | 0.02828 (8) | 0.0419 (5) | |
H4N | 0.0143 (14) | 0.218 (4) | 0.0390 (11) | 0.056 (9)* | |
C1 | 0.01098 (10) | 0.3102 (3) | 0.23847 (9) | 0.0299 (5) | |
C2 | −0.02847 (10) | 0.2726 (3) | 0.18944 (9) | 0.0315 (5) | |
C3 | 0.06192 (11) | 0.3391 (3) | 0.13071 (9) | 0.0327 (5) | |
C4 | 0.10405 (10) | 0.3533 (3) | 0.17995 (9) | 0.0316 (5) | |
C5 | 0.17977 (11) | 0.3684 (3) | 0.17965 (10) | 0.0347 (5) | |
C6 | 0.22210 (13) | 0.2671 (4) | 0.14841 (12) | 0.0462 (7) | |
H6 | 0.2041 (12) | 0.194 (3) | 0.1250 (11) | 0.043 (8)* | |
C7 | 0.29176 (13) | 0.2780 (4) | 0.15607 (13) | 0.0529 (7) | |
H7 | 0.3200 (15) | 0.208 (4) | 0.1362 (12) | 0.068 (9)* | |
C8 | 0.31845 (13) | 0.3931 (4) | 0.19409 (12) | 0.0492 (7) | |
H8 | 0.3652 (14) | 0.403 (3) | 0.2006 (10) | 0.051 (7)* | |
C9 | 0.27469 (12) | 0.4937 (4) | 0.22394 (12) | 0.0438 (7) | |
H9 | 0.2894 (12) | 0.575 (3) | 0.2516 (11) | 0.043 (7)* | |
C10 | 0.08151 (12) | 0.3768 (3) | 0.06990 (10) | 0.0367 (6) | |
C11 | 0.12867 (14) | 0.4934 (4) | 0.05341 (12) | 0.0500 (7) | |
H11 | 0.1562 (14) | 0.547 (4) | 0.0826 (12) | 0.060 (8)* | |
C12 | 0.13715 (17) | 0.5273 (5) | −0.00524 (13) | 0.0633 (9) | |
H12 | 0.1709 (15) | 0.608 (4) | −0.0163 (12) | 0.063 (8)* | |
C13 | 0.09857 (17) | 0.4461 (4) | −0.04616 (13) | 0.0629 (9) | |
H14 | 0.0993 (16) | 0.469 (4) | −0.0863 (15) | 0.089 (10)* | |
C14 | 0.05233 (17) | 0.3294 (4) | −0.02876 (12) | 0.0562 (8) | |
H13 | 0.0220 (14) | 0.270 (4) | −0.0548 (12) | 0.064 (9)* | |
C15 | −0.01420 (11) | 0.3048 (3) | 0.30038 (10) | 0.0357 (6) | |
C16 | −0.09956 (11) | 0.1984 (3) | 0.19289 (11) | 0.0389 (6) | |
Cl1 | 0.12673 (3) | 0.94713 (9) | 0.07395 (3) | 0.0540 (2) | |
O1W | 0.44735 (11) | 0.9286 (3) | 0.04654 (11) | 0.0664 (6) | |
H1A | 0.4215 (18) | 0.931 (4) | 0.0177 (16) | 0.084 (12)* | |
H1B | 0.4188 (19) | 0.899 (5) | 0.0784 (18) | 0.106 (13)* | |
O2W | 0.2565 (4) | 0.7120 (7) | 0.1020 (5) | 0.089 (3) | 0.62 (2) |
H21 | 0.228 (4) | 0.789 (11) | 0.088 (3) | 0.09 (2)* | 0.62 (2) |
H22 | 0.288 (4) | 0.774 (10) | 0.107 (4) | 0.11 (3)* | 0.62 (2) |
O3W | 0.2358 (5) | 0.770 (2) | 0.1446 (9) | 0.115 (8) | 0.38 (2) |
H31 | 0.286 (5) | 0.786 (10) | 0.145 (4) | 0.06 (2)* | 0.38 (2) |
H32 | 0.210 (6) | 0.846 (15) | 0.115 (7) | 0.11 (4)* | 0.38 (2) |
O4W | 0.2500 | 0.1391 (9) | 0.0000 | 0.137 (4) | 0.50 |
H41 | 0.2187 | 0.0920 | 0.0189 | 0.100* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0583 (11) | 0.0532 (13) | 0.0397 (10) | 0.0104 (9) | 0.0035 (8) | 0.0102 (9) |
O2 | 0.0603 (11) | 0.0369 (11) | 0.0434 (10) | 0.0024 (9) | 0.0184 (8) | 0.0000 (8) |
O3 | 0.0412 (10) | 0.1094 (19) | 0.0523 (12) | −0.0232 (11) | −0.0046 (9) | −0.0108 (11) |
O4 | 0.0344 (9) | 0.0507 (12) | 0.0484 (10) | −0.0046 (8) | 0.0079 (7) | 0.0039 (8) |
N1 | 0.0317 (10) | 0.0371 (13) | 0.0316 (10) | −0.0004 (9) | 0.0024 (8) | −0.0011 (8) |
N2 | 0.0316 (10) | 0.0360 (13) | 0.0322 (10) | 0.0009 (9) | −0.0007 (8) | 0.0001 (9) |
N3 | 0.0273 (10) | 0.0426 (14) | 0.0386 (11) | 0.0000 (9) | 0.0024 (8) | −0.0017 (10) |
N4 | 0.0490 (12) | 0.0445 (15) | 0.0321 (11) | 0.0066 (11) | 0.0014 (9) | −0.0029 (10) |
C1 | 0.0300 (12) | 0.0264 (14) | 0.0333 (12) | 0.0007 (10) | 0.0034 (9) | 0.0015 (10) |
C2 | 0.0288 (11) | 0.0315 (15) | 0.0341 (13) | 0.0022 (9) | 0.0005 (10) | 0.0024 (10) |
C3 | 0.0344 (12) | 0.0299 (14) | 0.0337 (12) | 0.0022 (10) | 0.0033 (9) | −0.0003 (10) |
C4 | 0.0296 (11) | 0.0314 (15) | 0.0338 (12) | −0.0002 (10) | 0.0024 (9) | −0.0014 (10) |
C5 | 0.0313 (12) | 0.0395 (15) | 0.0333 (12) | 0.0002 (11) | 0.0031 (9) | 0.0026 (11) |
C6 | 0.0408 (15) | 0.0471 (19) | 0.0509 (16) | 0.0011 (13) | 0.0116 (12) | −0.0069 (14) |
C7 | 0.0398 (15) | 0.052 (2) | 0.0667 (19) | 0.0112 (14) | 0.0168 (13) | 0.0061 (15) |
C8 | 0.0282 (13) | 0.056 (2) | 0.0635 (18) | 0.0039 (13) | 0.0038 (12) | 0.0153 (15) |
C9 | 0.0322 (13) | 0.0515 (19) | 0.0477 (15) | −0.0048 (12) | −0.0025 (11) | 0.0044 (13) |
C10 | 0.0372 (12) | 0.0394 (15) | 0.0334 (13) | 0.0061 (11) | 0.0026 (10) | 0.0007 (11) |
C11 | 0.0477 (16) | 0.055 (2) | 0.0471 (16) | −0.0023 (14) | 0.0053 (13) | 0.0104 (14) |
C12 | 0.0627 (19) | 0.070 (2) | 0.0571 (19) | 0.0060 (17) | 0.0208 (15) | 0.0231 (17) |
C13 | 0.077 (2) | 0.075 (2) | 0.0372 (16) | 0.0269 (19) | 0.0155 (16) | 0.0134 (17) |
C14 | 0.072 (2) | 0.063 (2) | 0.0329 (15) | 0.0233 (17) | −0.0009 (14) | −0.0036 (14) |
C15 | 0.0331 (12) | 0.0373 (16) | 0.0365 (13) | −0.0036 (11) | 0.0018 (10) | −0.0006 (12) |
C16 | 0.0286 (12) | 0.0420 (16) | 0.0460 (15) | 0.0017 (11) | −0.0025 (11) | 0.0027 (12) |
Cl1 | 0.0539 (4) | 0.0623 (5) | 0.0460 (4) | 0.0026 (3) | 0.0048 (3) | −0.0016 (3) |
O1W | 0.0630 (13) | 0.0796 (17) | 0.0565 (13) | 0.0058 (11) | −0.0065 (12) | 0.0218 (12) |
O2W | 0.062 (4) | 0.065 (4) | 0.141 (7) | 0.009 (3) | −0.028 (4) | −0.007 (3) |
O3W | 0.057 (6) | 0.137 (12) | 0.150 (14) | −0.001 (5) | −0.008 (6) | 0.077 (11) |
O4W | 0.159 (7) | 0.069 (5) | 0.187 (8) | 0.000 | 0.151 (7) | 0.000 |
O1—C15 | 1.205 (3) | C7—C8 | 1.373 (4) |
O2—C15 | 1.317 (3) | C7—H7 | 0.92 (3) |
O2—H2O | 0.97 (4) | C8—C9 | 1.369 (4) |
O3—C16 | 1.231 (3) | C8—H8 | 0.93 (3) |
O4—C16 | 1.256 (3) | C9—H9 | 0.95 (3) |
N1—C1 | 1.334 (3) | C10—C11 | 1.373 (4) |
N1—C4 | 1.345 (3) | C11—C12 | 1.384 (4) |
N2—C2 | 1.329 (3) | C11—H11 | 0.96 (3) |
N2—C3 | 1.332 (3) | C12—C13 | 1.366 (5) |
N3—C9 | 1.336 (3) | C12—H12 | 0.96 (3) |
N3—C5 | 1.339 (3) | C13—C14 | 1.368 (5) |
N3—H3N | 0.94 (3) | C13—H14 | 0.94 (3) |
N4—C14 | 1.343 (3) | C14—H13 | 0.96 (3) |
N4—C10 | 1.351 (3) | O1W—H1A | 0.83 (4) |
N4—H4N | 0.91 (3) | O1W—H1B | 0.95 (4) |
C1—C2 | 1.392 (3) | O2W—H21 | 0.89 (9) |
C1—C15 | 1.508 (3) | O2W—H22 | 0.81 (9) |
C2—C16 | 1.518 (3) | O2W—H31 | 1.29 (8) |
C3—C4 | 1.397 (3) | O2W—H32 | 1.45 (12) |
C3—C10 | 1.482 (3) | O3W—H21 | 1.32 (6) |
C4—C5 | 1.488 (3) | O3W—H22 | 1.34 (7) |
C5—C6 | 1.371 (3) | O3W—H31 | 1.00 (10) |
C6—C7 | 1.377 (4) | O3W—H32 | 1.05 (14) |
C6—H6 | 0.87 (3) | O4W—H41 | 0.8444 |
C15—O2—H2O | 112 (2) | C8—C9—H9 | 123.5 (14) |
C1—N1—C4 | 118.39 (18) | N4—C10—C11 | 119.0 (2) |
C2—N2—C3 | 119.48 (18) | N4—C10—C3 | 115.2 (2) |
C9—N3—C5 | 122.0 (2) | C11—C10—C3 | 125.5 (2) |
C9—N3—H3N | 118.5 (16) | C10—C11—C12 | 119.4 (3) |
C5—N3—H3N | 119.4 (16) | C10—C11—H11 | 119.4 (16) |
C14—N4—C10 | 122.3 (3) | C12—C11—H11 | 121.2 (16) |
C14—N4—H4N | 118.5 (17) | C13—C12—C11 | 120.1 (3) |
C10—N4—H4N | 119.2 (17) | C13—C12—H12 | 121.3 (17) |
N1—C1—C2 | 120.78 (19) | C11—C12—H12 | 118.6 (17) |
N1—C1—C15 | 114.33 (18) | C12—C13—C14 | 119.5 (3) |
C2—C1—C15 | 124.77 (19) | C12—C13—H14 | 125 (2) |
N2—C2—C1 | 120.09 (19) | C14—C13—H14 | 116 (2) |
N2—C2—C16 | 116.74 (19) | N4—C14—C13 | 119.7 (3) |
C1—C2—C16 | 123.09 (19) | N4—C14—H13 | 115.7 (17) |
N2—C3—C4 | 120.02 (19) | C13—C14—H13 | 124.5 (17) |
N2—C3—C10 | 113.93 (19) | O1—C15—O2 | 126.0 (2) |
C4—C3—C10 | 126.0 (2) | O1—C15—C1 | 121.9 (2) |
N1—C4—C3 | 120.24 (19) | O2—C15—C1 | 112.0 (2) |
N1—C4—C5 | 113.94 (19) | O3—C16—O4 | 126.9 (2) |
C3—C4—C5 | 125.7 (2) | O3—C16—C2 | 118.4 (2) |
N3—C5—C6 | 119.1 (2) | O4—C16—C2 | 114.6 (2) |
N3—C5—C4 | 116.4 (2) | H1A—O1W—H1B | 105 (3) |
C6—C5—C4 | 124.2 (2) | H21—O2W—H22 | 95 (7) |
C5—C6—C7 | 119.9 (3) | H21—O2W—H31 | 103 (6) |
C5—C6—H6 | 118.9 (16) | H22—O2W—H31 | 42 (6) |
C7—C6—H6 | 121.2 (16) | H21—O2W—H32 | 33 (6) |
C8—C7—C6 | 119.7 (3) | H22—O2W—H32 | 90 (7) |
C8—C7—H7 | 120.3 (19) | H31—O2W—H32 | 78 (7) |
C6—C7—H7 | 120.0 (19) | H21—O3W—H22 | 57 (5) |
C9—C8—C7 | 118.8 (3) | H21—O3W—H31 | 96 (6) |
C9—C8—H8 | 119.1 (16) | H22—O3W—H31 | 41 (5) |
C7—C8—H8 | 122.1 (16) | H21—O3W—H32 | 40 (6) |
N3—C9—C8 | 120.5 (3) | H22—O3W—H32 | 87 (7) |
N3—C9—H9 | 116.0 (14) | H31—O3W—H32 | 114 (8) |
C4—N1—C1—C2 | 4.4 (3) | C5—C6—C7—C8 | −1.4 (4) |
C4—N1—C1—C15 | −179.5 (2) | C6—C7—C8—C9 | 0.5 (4) |
C3—N2—C2—C1 | 4.9 (3) | C5—N3—C9—C8 | −1.9 (4) |
C3—N2—C2—C16 | −171.9 (2) | C7—C8—C9—N3 | 1.1 (4) |
N1—C1—C2—N2 | −9.6 (3) | C14—N4—C10—C11 | −0.2 (4) |
C15—C1—C2—N2 | 174.7 (2) | C14—N4—C10—C3 | 174.3 (2) |
N1—C1—C2—C16 | 167.0 (2) | N2—C3—C10—N4 | −26.8 (3) |
C15—C1—C2—C16 | −8.7 (4) | C4—C3—C10—N4 | 155.6 (2) |
C2—N2—C3—C4 | 4.3 (3) | N2—C3—C10—C11 | 147.2 (2) |
C2—N2—C3—C10 | −173.4 (2) | C4—C3—C10—C11 | −30.3 (4) |
C1—N1—C4—C3 | 4.9 (3) | N4—C10—C11—C12 | 0.2 (4) |
C1—N1—C4—C5 | −171.7 (2) | C3—C10—C11—C12 | −173.6 (2) |
N2—C3—C4—N1 | −9.5 (3) | C10—C11—C12—C13 | 0.4 (4) |
C10—C3—C4—N1 | 167.9 (2) | C11—C12—C13—C14 | −1.0 (5) |
N2—C3—C4—C5 | 166.7 (2) | C10—N4—C14—C13 | −0.4 (4) |
C10—C3—C4—C5 | −15.9 (4) | C12—C13—C14—N4 | 1.0 (4) |
C9—N3—C5—C6 | 1.0 (4) | N1—C1—C15—O1 | −72.5 (3) |
C9—N3—C5—C4 | 174.7 (2) | C2—C1—C15—O1 | 103.4 (3) |
N1—C4—C5—N3 | −45.6 (3) | N1—C1—C15—O2 | 104.1 (2) |
C3—C4—C5—N3 | 138.0 (2) | C2—C1—C15—O2 | −80.0 (3) |
N1—C4—C5—C6 | 127.8 (3) | N2—C2—C16—O3 | 9.8 (3) |
C3—C4—C5—C6 | −48.6 (4) | C1—C2—C16—O3 | −166.9 (2) |
N3—C5—C6—C7 | 0.7 (4) | N2—C2—C16—O4 | −171.5 (2) |
C4—C5—C6—C7 | −172.5 (2) | C1—C2—C16—O4 | 11.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···Cl1i | 0.97 (4) | 2.05 (4) | 2.9996 (18) | 168 (3) |
N3—H3N···O4ii | 0.94 (3) | 1.65 (3) | 2.582 (3) | 167 (2) |
N4—H4N···O1Wiii | 0.91 (3) | 1.78 (3) | 2.674 (3) | 169 (3) |
O1W—H1A···Cl1iv | 0.83 (4) | 2.30 (4) | 3.112 (3) | 167 (3) |
O1W—H1B···O3v | 0.95 (4) | 1.86 (4) | 2.802 (3) | 170 (3) |
O2W—H21···Cl1 | 0.89 (9) | 2.38 (10) | 3.230 (6) | 160 (6) |
O2W—H22···O3v | 0.81 (9) | 2.04 (10) | 2.794 (6) | 155 (8) |
O3W—H31···O3v | 1.00 (10) | 1.82 (10) | 2.809 (9) | 168 (7) |
O3W—H32···Cl1 | 1.05 (14) | 2.04 (14) | 3.028 (9) | 157 (9) |
O4W—H41···Cl1vi | 0.84 | 2.50 | 3.344 (3) | 179 |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, y+1/2, −z+1/2; (iii) x−1/2, −y+1, z; (iv) −x+1/2, y, −z; (v) x+1/2, −y+1, z; (vi) x, y−1, z. |
C16H11N4O4+·ClO4−·3H2O | F(000) = 492 |
Mr = 476.79 | Dx = 1.609 Mg m−3 |
Monoclinic, P2/c | Mo Kα radiation, λ = 0.71073 Å |
a = 6.1401 (7) Å | Cell parameters from 5000 reflections |
b = 15.6358 (12) Å | θ = 1.7–26.1° |
c = 10.7154 (8) Å | µ = 0.27 mm−1 |
β = 106.934 (8)° | T = 223 K |
V = 984.13 (15) Å3 | Block, pale yellow |
Z = 2 | 0.36 × 0.35 × 0.26 mm |
Stoe IPDS diffractometer | 1419 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.033 |
Graphite monochromator | θmax = 25.9°, θmin = 2.4° |
Detector resolution: 0.82Å pixels mm-1 | h = −7→7 |
ϕ oscillation scans | k = −19→19 |
7650 measured reflections | l = −13→13 |
1914 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.115 | All H-atom parameters refined |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0786P)2] where P = (Fo2 + 2Fc2)/3 |
1914 reflections | (Δ/σ)max < 0.001 |
190 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.58 e Å−3 |
C16H11N4O4+·ClO4−·3H2O | V = 984.13 (15) Å3 |
Mr = 476.79 | Z = 2 |
Monoclinic, P2/c | Mo Kα radiation |
a = 6.1401 (7) Å | µ = 0.27 mm−1 |
b = 15.6358 (12) Å | T = 223 K |
c = 10.7154 (8) Å | 0.36 × 0.35 × 0.26 mm |
β = 106.934 (8)° |
Stoe IPDS diffractometer | 1419 reflections with I > 2σ(I) |
7650 measured reflections | Rint = 0.033 |
1914 independent reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.115 | All H-atom parameters refined |
S = 1.02 | Δρmax = 0.18 e Å−3 |
1914 reflections | Δρmin = −0.58 e Å−3 |
190 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.3233 (3) | −0.03491 (9) | 0.10493 (15) | 0.0487 (4) | |
O2 | 0.1347 (3) | −0.12771 (9) | 0.18880 (15) | 0.0464 (4) | |
H2O | 0.0000 | −0.130 (3) | 0.2500 | 0.080 (12)* | |
N1 | 0.0965 (3) | 0.09766 (9) | 0.15109 (14) | 0.0297 (4) | |
N2 | 0.1821 (3) | 0.24553 (10) | 0.03765 (14) | 0.0321 (4) | |
H2N | 0.285 (4) | 0.2022 (15) | 0.051 (2) | 0.047 (6)* | |
C1 | 0.0643 (3) | 0.02366 (11) | 0.20518 (16) | 0.0298 (4) | |
C2 | 0.0346 (3) | 0.17086 (11) | 0.19261 (16) | 0.0276 (4) | |
C3 | 0.0324 (3) | 0.24614 (11) | 0.10802 (16) | 0.0291 (4) | |
C4 | −0.1222 (4) | 0.31173 (12) | 0.09105 (19) | 0.0362 (5) | |
H4 | −0.229 (4) | 0.3116 (13) | 0.1394 (19) | 0.035 (5)* | |
C5 | −0.1203 (4) | 0.37640 (13) | 0.0023 (2) | 0.0447 (5) | |
H5 | −0.224 (5) | 0.4201 (16) | −0.010 (2) | 0.054 (7)* | |
C6 | 0.0372 (4) | 0.37459 (14) | −0.0665 (2) | 0.0456 (5) | |
H6 | 0.045 (4) | 0.4182 (16) | −0.125 (2) | 0.053 (6)* | |
C7 | 0.1876 (4) | 0.30819 (13) | −0.04735 (19) | 0.0402 (5) | |
H7 | 0.299 (4) | 0.3010 (14) | −0.096 (2) | 0.045 (6)* | |
C8 | 0.1833 (4) | −0.05126 (12) | 0.16216 (18) | 0.0351 (4) | |
Cl1 | 0.5000 | 0.44850 (5) | 0.2500 | 0.0616 (3) | |
O11 | 0.5000 | 0.35788 (14) | 0.2500 | 0.0530 (6) | |
O12 | 0.5187 (7) | 0.4638 (2) | 0.4036 (3) | 0.0658 (10) | 0.50 |
O13 | 0.2741 (12) | 0.4793 (5) | 0.2005 (7) | 0.100 (3) | 0.50 |
O14 | 0.3338 (13) | 0.4887 (5) | 0.2673 (6) | 0.093 (2) | 0.50 |
O1W | 0.5044 (3) | 0.12538 (10) | 0.06311 (16) | 0.0441 (4) | |
H1A | 0.552 (5) | 0.1116 (17) | 0.000 (3) | 0.072 (9)* | |
H1B | 0.442 (5) | 0.0793 (18) | 0.080 (2) | 0.054 (7)* | |
O2W | 0.5000 | 0.25145 (16) | 0.7500 | 0.0713 (8) | |
H2WA | 0.3585 | 0.2104 | 0.7136 | 0.100* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0584 (10) | 0.0409 (8) | 0.0574 (10) | 0.0081 (7) | 0.0338 (9) | −0.0015 (6) |
O2 | 0.0539 (9) | 0.0312 (8) | 0.0586 (9) | 0.0040 (6) | 0.0236 (8) | −0.0015 (6) |
N1 | 0.0274 (8) | 0.0322 (8) | 0.0301 (8) | 0.0009 (6) | 0.0094 (6) | −0.0005 (6) |
N2 | 0.0342 (9) | 0.0329 (8) | 0.0317 (8) | −0.0027 (7) | 0.0135 (7) | −0.0034 (6) |
C1 | 0.0287 (10) | 0.0312 (9) | 0.0277 (8) | −0.0013 (7) | 0.0056 (7) | −0.0019 (7) |
C2 | 0.0235 (9) | 0.0299 (9) | 0.0297 (9) | 0.0004 (7) | 0.0085 (7) | −0.0008 (7) |
C3 | 0.0300 (10) | 0.0310 (9) | 0.0271 (8) | −0.0030 (7) | 0.0095 (7) | −0.0022 (7) |
C4 | 0.0376 (11) | 0.0370 (10) | 0.0360 (10) | 0.0026 (8) | 0.0137 (9) | 0.0014 (8) |
C5 | 0.0534 (14) | 0.0365 (11) | 0.0431 (11) | 0.0085 (10) | 0.0125 (10) | 0.0067 (9) |
C6 | 0.0654 (15) | 0.0396 (11) | 0.0345 (10) | −0.0026 (10) | 0.0187 (10) | 0.0069 (9) |
C7 | 0.0508 (13) | 0.0416 (11) | 0.0331 (10) | −0.0093 (9) | 0.0198 (9) | −0.0019 (8) |
C8 | 0.0385 (11) | 0.0342 (10) | 0.0325 (9) | 0.0043 (8) | 0.0103 (8) | −0.0013 (8) |
Cl1 | 0.0433 (5) | 0.0381 (4) | 0.0898 (7) | 0.000 | −0.0020 (4) | 0.000 |
O11 | 0.0560 (14) | 0.0413 (12) | 0.0661 (14) | 0.000 | 0.0249 (12) | 0.000 |
O12 | 0.086 (3) | 0.071 (2) | 0.0430 (18) | −0.023 (2) | 0.0225 (18) | −0.0166 (16) |
O13 | 0.069 (3) | 0.070 (3) | 0.122 (5) | 0.022 (2) | −0.032 (4) | 0.013 (4) |
O14 | 0.115 (6) | 0.086 (4) | 0.104 (5) | 0.052 (4) | 0.073 (4) | 0.017 (4) |
O1W | 0.0407 (9) | 0.0466 (9) | 0.0517 (9) | 0.0004 (7) | 0.0236 (7) | −0.0074 (7) |
O2W | 0.0666 (18) | 0.0549 (15) | 0.096 (2) | 0.000 | 0.0298 (15) | 0.000 |
O1—C8 | 1.219 (2) | C5—H5 | 0.92 (3) |
O2—C8 | 1.284 (2) | C6—C7 | 1.365 (3) |
O2—H2O | 1.1965 (19) | C6—H6 | 0.94 (2) |
N1—C2 | 1.323 (2) | C7—H7 | 0.98 (2) |
N1—C1 | 1.334 (2) | Cl1—O14 | 1.258 (6) |
N2—C7 | 1.345 (2) | Cl1—O14ii | 1.258 (6) |
N2—C3 | 1.348 (2) | Cl1—O11 | 1.417 (2) |
N2—H2N | 0.91 (2) | Cl1—O13ii | 1.418 (6) |
C1—C1i | 1.410 (4) | Cl1—O13 | 1.418 (6) |
C1—C8 | 1.522 (3) | Cl1—O12 | 1.634 (3) |
C2—C2i | 1.413 (3) | Cl1—O12ii | 1.634 (3) |
C2—C3 | 1.483 (2) | O12—O14 | 1.615 (8) |
C3—C4 | 1.373 (3) | O13—O14 | 0.718 (7) |
C4—C5 | 1.391 (3) | O1W—H1A | 0.84 (3) |
C4—H4 | 0.95 (2) | O1W—H1B | 0.86 (3) |
C5—C6 | 1.376 (3) | O2W—H2WA | 1.0590 |
C8—O2—H2O | 113 (2) | O2—C8—C1 | 119.08 (17) |
C2—N1—C1 | 120.69 (15) | O14—Cl1—O14ii | 120.0 (8) |
C7—N2—C3 | 121.96 (18) | O14—Cl1—O11 | 120.0 (4) |
C7—N2—H2N | 119.7 (14) | O14ii—Cl1—O11 | 120.0 (4) |
C3—N2—H2N | 118.3 (14) | O14—Cl1—O13ii | 121.5 (4) |
N1—C1—C1i | 118.63 (10) | O14ii—Cl1—O13ii | 30.4 (4) |
N1—C1—C8 | 113.01 (16) | O11—Cl1—O13ii | 109.9 (3) |
C1i—C1—C8 | 128.32 (11) | O14—Cl1—O13 | 30.4 (4) |
N1—C2—C2i | 118.77 (10) | O14ii—Cl1—O13 | 121.5 (4) |
N1—C2—C3 | 115.67 (15) | O11—Cl1—O13 | 109.9 (3) |
C2i—C2—C3 | 125.48 (10) | O13ii—Cl1—O13 | 140.3 (6) |
N2—C3—C4 | 119.27 (17) | O14—Cl1—O12 | 66.4 (3) |
N2—C3—C2 | 116.75 (16) | O14ii—Cl1—O12 | 104.7 (3) |
C4—C3—C2 | 123.80 (16) | O11—Cl1—O12 | 98.43 (13) |
C3—C4—C5 | 119.36 (19) | O13ii—Cl1—O12 | 78.5 (4) |
C3—C4—H4 | 119.3 (12) | O13—Cl1—O12 | 95.8 (4) |
C5—C4—H4 | 121.4 (12) | O14—Cl1—O12ii | 104.7 (3) |
C6—C5—C4 | 119.9 (2) | O14ii—Cl1—O12ii | 66.4 (3) |
C6—C5—H5 | 120.4 (16) | O11—Cl1—O12ii | 98.43 (13) |
C4—C5—H5 | 119.7 (16) | O13ii—Cl1—O12ii | 95.8 (4) |
C7—C6—C5 | 119.05 (19) | O13—Cl1—O12ii | 78.5 (4) |
C7—C6—H6 | 119.3 (15) | O12—Cl1—O12ii | 163.1 (3) |
C5—C6—H6 | 121.6 (15) | O14—O12—Cl1 | 45.6 (2) |
N2—C7—C6 | 120.44 (19) | O14—O13—Cl1 | 62.4 (8) |
N2—C7—H7 | 115.9 (13) | O13—O14—Cl1 | 87.2 (9) |
C6—C7—H7 | 123.6 (13) | O13—O14—O12 | 150.7 (12) |
O1—C8—O2 | 123.39 (17) | Cl1—O14—O12 | 68.0 (4) |
O1—C8—C1 | 117.52 (17) | H1A—O1W—H1B | 104 (3) |
C2—N1—C1—C1i | 8.5 (3) | O11—Cl1—O12—O14 | −119.1 (4) |
C2—N1—C1—C8 | −169.67 (16) | O13ii—Cl1—O12—O14 | 132.2 (4) |
C1—N1—C2—C2i | 9.4 (3) | O13—Cl1—O12—O14 | −8.0 (7) |
C1—N1—C2—C3 | −167.37 (16) | O12ii—Cl1—O12—O14 | 60.9 (4) |
C7—N2—C3—C4 | 1.2 (3) | O14ii—Cl1—O13—O14 | −96.5 (14) |
C7—N2—C3—C2 | 176.52 (16) | O11—Cl1—O13—O14 | 115.8 (11) |
N1—C2—C3—N2 | −29.8 (2) | O13ii—Cl1—O13—O14 | −64.2 (11) |
C2i—C2—C3—N2 | 153.7 (2) | O12—Cl1—O13—O14 | 14.6 (12) |
N1—C2—C3—C4 | 145.31 (18) | O12ii—Cl1—O13—O14 | −149.3 (12) |
C2i—C2—C3—C4 | −31.2 (3) | Cl1—O13—O14—O12 | −31 (2) |
N2—C3—C4—C5 | −0.4 (3) | O14ii—Cl1—O14—O13 | 102.1 (12) |
C2—C3—C4—C5 | −175.34 (18) | O11—Cl1—O14—O13 | −77.9 (12) |
C3—C4—C5—C6 | −0.7 (3) | O13ii—Cl1—O14—O13 | 137.5 (11) |
C4—C5—C6—C7 | 0.9 (3) | O12—Cl1—O14—O13 | −164.1 (13) |
C3—N2—C7—C6 | −1.0 (3) | O12ii—Cl1—O14—O13 | 31.1 (13) |
C5—C6—C7—N2 | −0.1 (3) | O14ii—Cl1—O14—O12 | −93.9 (3) |
N1—C1—C8—O1 | 12.7 (2) | O11—Cl1—O14—O12 | 86.1 (3) |
C1i—C1—C8—O1 | −165.2 (2) | O13ii—Cl1—O14—O12 | −58.4 (5) |
N1—C1—C8—O2 | −168.12 (16) | O13—Cl1—O14—O12 | 164.1 (13) |
C1i—C1—C8—O2 | 14.0 (3) | O12ii—Cl1—O14—O12 | −164.8 (2) |
O14ii—Cl1—O12—O14 | 116.7 (8) | Cl1—O12—O14—O13 | 34 (3) |
Symmetry codes: (i) −x, y, −z+1/2; (ii) −x+1, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O2i | 1.20 (1) | 1.20 (1) | 2.392 (3) | 177 (4) |
N2—H2N···O1W | 0.91 (2) | 1.78 (3) | 2.684 (2) | 172 (2) |
O1W—H1A···O1iii | 0.84 (3) | 1.94 (3) | 2.734 (2) | 156 (3) |
O1W—H1B···O1 | 0.86 (3) | 1.98 (3) | 2.830 (2) | 172 (3) |
O2W—H2WA···O2iv | 1.06 | 1.85 | 2.889 (2) | 167 |
Symmetry codes: (i) −x, y, −z+1/2; (iii) −x+1, −y, −z; (iv) x, −y, z+1/2. |
C16H11N4O4+·PF6−·3H2O | F(000) = 532 |
Mr = 522.31 | Dx = 1.722 Mg m−3 |
Monoclinic, P2/c | Mo Kα radiation, λ = 0.71073 Å |
a = 6.1910 (6) Å | Cell parameters from 5000 reflections |
b = 15.6564 (11) Å | θ = 1.7–26.1° |
c = 10.8349 (10) Å | µ = 0.24 mm−1 |
β = 106.400 (11)° | T = 293 K |
V = 1007.48 (15) Å3 | Rod, pale yellow |
Z = 2 | 0.70 × 0.20 × 0.15 mm |
Stoe IPDS diffractometer | 1628 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.029 |
Graphite monochromator | θmax = 25.9°, θmin = 3.3° |
Detector resolution: 0.81Å pixels mm-1 | h = −7→7 |
ϕ oscillation scans | k = −19→19 |
7713 measured reflections | l = −13→13 |
1944 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.152 | All H-atom parameters refined |
S = 1.20 | w = 1/[σ2(Fo2) + (0.1018P)2 + 0.1313P] where P = (Fo2 + 2Fc2)/3 |
1944 reflections | (Δ/σ)max < 0.001 |
186 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.83 e Å−3 |
C16H11N4O4+·PF6−·3H2O | V = 1007.48 (15) Å3 |
Mr = 522.31 | Z = 2 |
Monoclinic, P2/c | Mo Kα radiation |
a = 6.1910 (6) Å | µ = 0.24 mm−1 |
b = 15.6564 (11) Å | T = 293 K |
c = 10.8349 (10) Å | 0.70 × 0.20 × 0.15 mm |
β = 106.400 (11)° |
Stoe IPDS diffractometer | 1628 reflections with I > 2σ(I) |
7713 measured reflections | Rint = 0.029 |
1944 independent reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.152 | All H-atom parameters refined |
S = 1.20 | Δρmax = 0.25 e Å−3 |
1944 reflections | Δρmin = −0.83 e Å−3 |
186 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.4040 (3) | 0.09425 (10) | 0.34843 (16) | 0.0286 (4) | |
N2 | 0.3208 (3) | 0.24229 (11) | 0.46196 (15) | 0.0302 (4) | |
H2N | 0.214 (6) | 0.2008 (19) | 0.451 (3) | 0.049 (7)* | |
O1 | 0.1776 (3) | −0.03754 (11) | 0.39442 (18) | 0.0473 (5) | |
O2 | 0.3656 (3) | −0.13016 (10) | 0.31136 (18) | 0.0478 (5) | |
H2O | 0.5000 | −0.124 (4) | 0.2500 | 0.101 (19)* | |
C1 | 0.4356 (3) | 0.02054 (13) | 0.29450 (18) | 0.0293 (4) | |
C2 | 0.4658 (3) | 0.16771 (12) | 0.30675 (17) | 0.0263 (4) | |
C3 | 0.4688 (3) | 0.24235 (13) | 0.39136 (17) | 0.0265 (4) | |
C4 | 0.6261 (4) | 0.30703 (14) | 0.40890 (19) | 0.0334 (5) | |
H4 | 0.747 (5) | 0.3146 (17) | 0.359 (3) | 0.045 (7)* | |
C5 | 0.6266 (4) | 0.37137 (15) | 0.4977 (2) | 0.0407 (5) | |
H5 | 0.725 (5) | 0.4157 (19) | 0.508 (3) | 0.048 (8)* | |
C6 | 0.4718 (4) | 0.36946 (15) | 0.5673 (2) | 0.0411 (6) | |
H6 | 0.474 (5) | 0.413 (2) | 0.634 (3) | 0.053 (8)* | |
C7 | 0.3190 (4) | 0.30384 (14) | 0.54757 (19) | 0.0363 (5) | |
H7 | 0.215 (5) | 0.2940 (17) | 0.592 (3) | 0.042 (7)* | |
C8 | 0.3177 (4) | −0.05412 (14) | 0.3380 (2) | 0.0361 (5) | |
O1W | −0.0014 (3) | 0.12351 (12) | 0.43619 (18) | 0.0434 (5) | |
H1WA | −0.047 (6) | 0.110 (2) | 0.495 (4) | 0.069 (11)* | |
H1WB | 0.059 (7) | 0.076 (2) | 0.416 (4) | 0.074 (11)* | |
O2W | 0.0000 | −0.2445 (3) | 0.2500 | 0.1238 (18) | |
H2WA | −0.1451 | −0.2321 | 0.2136 | 0.100* | |
P1 | 0.0000 | 0.45753 (5) | 0.2500 | 0.0331 (3) | |
F1 | 0.0000 | 0.35438 (12) | 0.2500 | 0.0437 (5) | |
F2 | 0.0000 | 0.55917 (14) | 0.2500 | 0.0610 (6) | |
F3 | 0.0436 (3) | 0.45621 (10) | 0.40178 (13) | 0.0532 (5) | |
F4 | 0.2650 (2) | 0.45701 (10) | 0.26905 (15) | 0.0523 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0279 (8) | 0.0322 (9) | 0.0258 (8) | −0.0012 (6) | 0.0075 (6) | 0.0005 (6) |
N2 | 0.0326 (9) | 0.0330 (9) | 0.0257 (8) | 0.0021 (7) | 0.0096 (7) | 0.0023 (7) |
O1 | 0.0580 (11) | 0.0395 (9) | 0.0541 (10) | −0.0102 (7) | 0.0317 (9) | 0.0014 (7) |
O2 | 0.0599 (11) | 0.0300 (8) | 0.0578 (11) | −0.0040 (7) | 0.0233 (9) | 0.0021 (7) |
C1 | 0.0298 (9) | 0.0313 (10) | 0.0254 (9) | −0.0001 (8) | 0.0053 (8) | 0.0009 (8) |
C2 | 0.0238 (8) | 0.0295 (10) | 0.0253 (9) | 0.0000 (7) | 0.0066 (7) | 0.0014 (7) |
C3 | 0.0288 (9) | 0.0297 (10) | 0.0213 (9) | 0.0016 (7) | 0.0073 (7) | 0.0025 (7) |
C4 | 0.0378 (11) | 0.0348 (11) | 0.0280 (9) | −0.0044 (9) | 0.0102 (8) | 0.0000 (8) |
C5 | 0.0532 (14) | 0.0362 (12) | 0.0301 (10) | −0.0089 (10) | 0.0073 (10) | −0.0024 (9) |
C6 | 0.0590 (14) | 0.0384 (12) | 0.0253 (10) | 0.0030 (10) | 0.0112 (9) | −0.0040 (9) |
C7 | 0.0472 (12) | 0.0390 (12) | 0.0259 (9) | 0.0067 (10) | 0.0155 (9) | 0.0021 (8) |
C8 | 0.0415 (12) | 0.0342 (11) | 0.0316 (10) | −0.0045 (9) | 0.0088 (9) | 0.0030 (8) |
O1W | 0.0399 (9) | 0.0472 (11) | 0.0491 (10) | −0.0032 (7) | 0.0223 (8) | 0.0074 (8) |
O2W | 0.089 (3) | 0.099 (3) | 0.182 (6) | 0.000 | 0.037 (3) | 0.000 |
P1 | 0.0331 (4) | 0.0381 (5) | 0.0288 (5) | 0.000 | 0.0101 (3) | 0.000 |
F1 | 0.0530 (11) | 0.0404 (11) | 0.0437 (10) | 0.000 | 0.0233 (9) | 0.000 |
F2 | 0.0629 (14) | 0.0399 (12) | 0.0721 (15) | 0.000 | 0.0060 (12) | 0.000 |
F3 | 0.0609 (9) | 0.0684 (10) | 0.0307 (8) | 0.0100 (7) | 0.0136 (6) | −0.0075 (6) |
F4 | 0.0354 (8) | 0.0632 (10) | 0.0596 (10) | −0.0034 (6) | 0.0153 (7) | −0.0023 (7) |
N1—C2 | 1.331 (3) | C5—C6 | 1.377 (4) |
N1—C1 | 1.333 (3) | C5—H5 | 0.91 (3) |
N2—C7 | 1.340 (3) | C6—C7 | 1.372 (4) |
N2—C3 | 1.349 (3) | C6—H6 | 0.99 (3) |
N2—H2N | 0.91 (3) | C7—H7 | 0.92 (3) |
O1—C8 | 1.222 (3) | O1W—H1WA | 0.79 (4) |
O2—C8 | 1.279 (3) | O1W—H1WB | 0.89 (4) |
O2—H2O | 1.206 (5) | O2W—H2WA | 0.8946 |
C1—C1i | 1.414 (4) | P1—F3ii | 1.5897 (14) |
C1—C8 | 1.522 (3) | P1—F3 | 1.5897 (14) |
C2—C2i | 1.409 (4) | P1—F2 | 1.591 (2) |
C2—C3 | 1.482 (3) | P1—F4ii | 1.5948 (14) |
C3—C4 | 1.380 (3) | P1—F4 | 1.5948 (14) |
C4—C5 | 1.393 (3) | P1—F1 | 1.615 (2) |
C4—H4 | 1.05 (3) | ||
C2—N1—C1 | 120.49 (17) | N2—C7—C6 | 120.4 (2) |
C7—N2—C3 | 122.12 (19) | N2—C7—H7 | 112.7 (17) |
C7—N2—H2N | 116.9 (18) | C6—C7—H7 | 126.8 (17) |
C3—N2—H2N | 121.0 (19) | O1—C8—O2 | 123.6 (2) |
C8—O2—H2O | 107 (3) | O1—C8—C1 | 117.53 (19) |
N1—C1—C1i | 118.69 (12) | O2—C8—C1 | 118.9 (2) |
N1—C1—C8 | 112.74 (17) | H1WA—O1W—H1WB | 104 (4) |
C1i—C1—C8 | 128.56 (12) | F3ii—P1—F3 | 178.51 (13) |
N1—C2—C2i | 118.84 (11) | F3ii—P1—F2 | 90.75 (6) |
N1—C2—C3 | 115.22 (16) | F3—P1—F2 | 90.75 (6) |
C2i—C2—C3 | 125.84 (11) | F3ii—P1—F4ii | 89.88 (8) |
N2—C3—C4 | 119.21 (18) | F3—P1—F4ii | 90.11 (8) |
N2—C3—C2 | 117.27 (17) | F2—P1—F4ii | 90.30 (7) |
C4—C3—C2 | 123.29 (17) | F3ii—P1—F4 | 90.11 (8) |
C3—C4—C5 | 119.3 (2) | F3—P1—F4 | 89.88 (8) |
C3—C4—H4 | 126.3 (15) | F2—P1—F4 | 90.30 (7) |
C5—C4—H4 | 114.3 (15) | F4ii—P1—F4 | 179.41 (13) |
C6—C5—C4 | 119.8 (2) | F3ii—P1—F1 | 89.25 (6) |
C6—C5—H5 | 119.8 (19) | F3—P1—F1 | 89.25 (6) |
C4—C5—H5 | 120.3 (19) | F2—P1—F1 | 180.0 |
C7—C6—C5 | 119.1 (2) | F4ii—P1—F1 | 89.70 (7) |
C7—C6—H6 | 119.7 (18) | F4—P1—F1 | 89.70 (7) |
C5—C6—H6 | 121.1 (18) | ||
C2—N1—C1—C1i | 9.0 (3) | N2—C3—C4—C5 | −0.9 (3) |
C2—N1—C1—C8 | −169.71 (17) | C2—C3—C4—C5 | −175.14 (19) |
C1—N1—C2—C2i | 9.2 (3) | C3—C4—C5—C6 | 0.4 (3) |
C1—N1—C2—C3 | −167.13 (17) | C4—C5—C6—C7 | 0.0 (3) |
C7—N2—C3—C4 | 1.0 (3) | C3—N2—C7—C6 | −0.7 (3) |
C7—N2—C3—C2 | 175.63 (17) | C5—C6—C7—N2 | 0.2 (3) |
N1—C2—C3—N2 | −30.2 (2) | N1—C1—C8—O1 | 13.5 (3) |
C2i—C2—C3—N2 | 153.7 (2) | C1i—C1—C8—O1 | −165.0 (3) |
N1—C2—C3—C4 | 144.14 (19) | N1—C1—C8—O2 | −168.02 (19) |
C2i—C2—C3—C4 | −31.9 (3) | C1i—C1—C8—O2 | 13.5 (4) |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O2i | 1.21 (1) | 1.21 (1) | 2.405 (4) | 171 (6) |
N2—H2N···O1W | 0.91 (3) | 1.77 (3) | 2.683 (3) | 177 (3) |
O1W—H1WA···O1iii | 0.79 (4) | 1.98 (4) | 2.739 (2) | 160 (4) |
O1W—H1WB···O1 | 0.89 (4) | 1.96 (4) | 2.841 (3) | 171 (4) |
O2W—H2WA···O2ii | 0.89 | 2.07 | 2.815 (4) | 140 |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x, y, −z+1/2; (iii) −x, −y, −z+1. |
Experimental details
(Ia) | (II) | (IIIa) | (IIIb) | |
Crystal data | ||||
Chemical formula | C16H10N4O4 | C16H11N4O4+·Cl−·2.25H2O | C16H11N4O4+·ClO4−·3H2O | C16H11N4O4+·PF6−·3H2O |
Mr | 322.28 | 399.27 | 476.79 | 522.31 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, I2/a | Monoclinic, P2/c | Monoclinic, P2/c |
Temperature (K) | 293 | 293 | 223 | 293 |
a, b, c (Å) | 10.477 (1), 13.523 (2), 10.058 (1) | 19.5883 (17), 8.0623 (5), 22.936 (2) | 6.1401 (7), 15.6358 (12), 10.7154 (8) | 6.1910 (6), 15.6564 (11), 10.8349 (10) |
α, β, γ (°) | 90, 110.07 (1), 90 | 90, 90.559 (11), 90 | 90, 106.934 (8), 90 | 90, 106.400 (11), 90 |
V (Å3) | 1338.5 (3) | 3622.0 (5) | 984.13 (15) | 1007.48 (15) |
Z | 4 | 8 | 2 | 2 |
Radiation type | Mo Kα | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.12 | 0.26 | 0.27 | 0.24 |
Crystal size (mm) | 0.46 × 0.30 × 0.11 | 0.5 × 0.2 × 0.1 | 0.36 × 0.35 × 0.26 | 0.70 × 0.20 × 0.15 |
Data collection | ||||
Diffractometer | Stoe four-circle diffractometer | Stoe IPDS diffractometer | Stoe IPDS diffractometer | Stoe IPDS diffractometer |
Absorption correction | – | – | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2356, 2336, 1227 | 13718, 3488, 1943 | 7650, 1914, 1419 | 7713, 1944, 1628 |
Rint | 0.039 | 0.055 | 0.033 | 0.029 |
(sin θ/λ)max (Å−1) | 0.594 | 0.615 | 0.615 | 0.614 |
Refinement | ||||
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.092, 0.90 | 0.039, 0.093, 0.82 | 0.040, 0.115, 1.02 | 0.044, 0.152, 1.20 |
No. of reflections | 2336 | 3488 | 1914 | 1944 |
No. of parameters | 258 | 327 | 190 | 186 |
H-atom treatment | All H-atom parameters refined | All H-atom parameters refined | All H-atom parameters refined | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.17, −0.20 | 0.63, −0.26 | 0.18, −0.58 | 0.25, −0.83 |
Computer programs: , EXPOSE (Stoe & Cie, 2000), CELL (Stoe & Cie, 2000), INTEGRATE (Stoe & Cie, 2000), X-RED in STADI4 (Stoe & Cie, 1997), SHELXS97 (Sheldrick, 1990), SHELXL97 (Sheldrick, 1997), PLATON99 (Spek, 1990), SHELXL97.
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O4i | 1.20 (4) | 1.29 (4) | 2.475 (3) | 169 (3) |
N3—H3N···N4 | 1.22 (3) | 1.32 (3) | 2.528 (3) | 167 (3) |
Symmetry code: (i) x, −y+1/2, z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···Cl1i | 0.97 (4) | 2.05 (4) | 2.9996 (18) | 168 (3) |
N3—H3N···O4ii | 0.94 (3) | 1.65 (3) | 2.582 (3) | 167 (2) |
N4—H4N···O1Wiii | 0.91 (3) | 1.78 (3) | 2.674 (3) | 169 (3) |
O1W—H1A···Cl1iv | 0.83 (4) | 2.30 (4) | 3.112 (3) | 167 (3) |
O1W—H1B···O3v | 0.95 (4) | 1.86 (4) | 2.802 (3) | 170 (3) |
O2W—H21···Cl1 | 0.89 (9) | 2.38 (10) | 3.230 (6) | 160 (6) |
O2W—H22···O3v | 0.81 (9) | 2.04 (10) | 2.794 (6) | 155 (8) |
O3W—H31···O3v | 1.00 (10) | 1.82 (10) | 2.809 (9) | 168 (7) |
O3W—H32···Cl1 | 1.05 (14) | 2.04 (14) | 3.028 (9) | 157 (9) |
O4W—H41···Cl1vi | 0.84 | 2.50 | 3.344 (3) | 179 |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, y+1/2, −z+1/2; (iii) x−1/2, −y+1, z; (iv) −x+1/2, y, −z; (v) x+1/2, −y+1, z; (vi) x, y−1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O2i | 1.1965 (19) | 1.1965 (19) | 2.392 (3) | 177 (4) |
N2—H2N···O1W | 0.91 (2) | 1.78 (3) | 2.684 (2) | 172 (2) |
O1W—H1A···O1ii | 0.84 (3) | 1.94 (3) | 2.734 (2) | 156 (3) |
O1W—H1B···O1 | 0.86 (3) | 1.98 (3) | 2.830 (2) | 172 (3) |
O2W—H2WA···O2iii | 1.06 | 1.85 | 2.889 (2) | 167 |
Symmetry codes: (i) −x, y, −z+1/2; (ii) −x+1, −y, −z; (iii) x, −y, z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2O···O2i | 1.206 (5) | 1.206 (5) | 2.405 (4) | 171 (6) |
N2—H2N···O1W | 0.91 (3) | 1.77 (3) | 2.683 (3) | 177 (3) |
O1W—H1WA···O1ii | 0.79 (4) | 1.98 (4) | 2.739 (2) | 160 (4) |
O1W—H1WB···O1 | 0.89 (4) | 1.96 (4) | 2.841 (3) | 171 (4) |
O2W—H2WA···O2iii | 0.89 | 2.07 | 2.815 (4) | 140 |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x, −y, −z+1; (iii) −x, y, −z+1/2. |
Subscribe to Acta Crystallographica Section C: Structural Chemistry
The full text of this article is available to subscribers to the journal.
- Information on subscribing
- Sample issue
- Purchase subscription
- Reduced-price subscriptions
- If you have already subscribed, you may need to register
The potentially bis-tridentate coordinating ligand 5,6-bis(2-pyridyl)pyrazine-2,3-dicarboxylic acid, (I), was synthesized in order to study its coordination behaviour with transition metals, and it does indeed exhibit a highly diverse coordination geometry. At least eight different coordination modes have been observed in the formation of mononuclear, binuclear and polymeric coordination complexes (Alfonso et al., 2001). A prominent characteristic of this compound is its amphoteric character. It can exist as an inner salt zwitterion, (Ia), and as different charged species, for example as in the chloride 2.25 hydrate, (II), or the perchlorate and hexafluorophosphate trihydrate salts, (IIIa) and (IIIb), as shown in the Scheme. \sch
When recrystallized from water, compound (I) exists as the inner-salt zwitterion, (Ia) (Fig. 1). As a result of an intramolecular hydrogen bond involving the pyridinium N+—H and the pyridine N atoms, the adjacent pyridine (py) rings are almost coplanar with the central pyrazine (pz) ring, with a pyH-to-pz dihedral angle of 4.3 (1)° and a py-to-pz dihedral angle of 7.9 (1)°. The N atoms are separated by 2.528 (3) Å, and this rather short intramolecular hydrogen bond [N3—H3 1.22 (3) and H3···N4 1.32 (3) Å, and N3—H3···N4 167 (3)°; Table 1] leads to a slight twist of the pyrazine ring (plane C1/N1/C4 to plane C2/N2/C3) of 3.6 (4)°, as well as to two unusually large exocyclic angles, C3—C4—C5 [131.0 (3)°] and C4—C3—C10 [131.2 (2)°]. This type of hydrogen-bond, with almost identical bond distances and angles, was also found in the diprotonated form of tetra(2-pyridyl)pyrazine by Bock et al. (1992) and analysed theoretically. An analysis of hydrogen bonding in organoammonium H(N) atoms of this type has been made by Robertson et al. (1998).
The carboxylate group (C16/O3/O4) and the carboxylic acid group (C15/O1/O2) are rotated out of the plane of the pyrazine ring. They are inclined to one another by 59.5 (3)°, and to the pyrazine ring by 37.9 (1) and 58.3 (2)°, respectively. In the crystal of (Ia), symmetry-related molecules are hydrogen bonded via the carboxylic acid OH group and one of the carboxylate O atoms (Table 1). This results in the formation of a one-dimensional polymer with a channel-type structure (Fig. 2). A similar strong intermolecular O—H.·O hydrogen bond, with almost identical bond distances and angles, has been observed previously in caesium trihydrogen diphthalate (Krol et al., 1983).
Recrystallization of (Ia) from 1M HCl yielded colourless single crystals of (II) (Fig. 3). Here, both of the pyridine rings are protonated and they are both rotated by ca 180° from their positions in (Ia). They are inclined to one another by 65.6 (1)°, and by 49.2 (1)° (N3/C5—C9) and 30.8 (1)° (N4/C10—C14) to the pyrazine ring. This places the pyridine N atoms slightly above and below the plane of the pyrazine ring, which is twisted by 4.9 (2)° (plane C1/N1/C4 to plane C2/N2/C3). The carboxylic acid group (C15/O1/O2) is out of the plane of the pyrazine ring by 75.7 (1)°, compared with 58.3 (1)° in (Ia). The carboxylate group (C16/O3/O4) is inclined to the pyrazine ring by only 15.3 (3)°, compared with 37.9 (1)° in (Ia).
This triprotonated form, (II), also differs from (Ia) in the type of hydrogen bonding. There are no intramolecular hydrogen bonds in the crystal structure of (II). However, symmetry-related molecules are linked by hydrogen bonds to form a three-dimensional hydrogen-bonded network. This involves the N atoms of both protonated pyridine rings, the O atoms of the carboxylate, the OH of the carboxylic acid, the lattice water molecules and the Cl- anion, which participates in four hydrogen-bond interactions. Details are given in Table 2 and Fig. 4.
A second triprotonated form, (IIIa), was obtained on slow evaporation of a solution of (Ia) in 1M HClO4. Compound (IIIa) possesses C2 symmetry and its structure differs significantly from that of (Ia) (Fig. 5). Here again, both pyridine rings are protonated and are twisted out of the plane of the pyrazine ring by 34.8 (1)°, and inclined to one another by 62.2 (1)°. The carboxylate and carboxylic acid groups are both inclined to the pyrazine plane by 19.7 (3)° and to one another by 5.2 (4)°. This arrangement is the result of the presence of a strong symmetrical intramolecular hydrogen bond (Table 3). This type of symmetrical hydrogen bond has been observed previously in pyrazine-2,3-dicarboxylic acid 3-amino-1,2,4-triazole (Lynch et al., 1994) and in bis[dihydrogen 1,2,4,5-benzenetetracarboxylate(2-)] (Karanović et al., 1999). It is interesting to note that the deviation from planarity of the pyrazine ring is larger than in (Ia) or (II), with a twist angle of 9.6 (4)°. In the crystal, the C16H11N4O4+ cations and the lattice water form a one-dimensional hydrogen-bonded polymer, separated by the disordered perchlorate anions. Details are given in Table 3 and Fig. 6.
From the reaction of (Ia) with Ag[PF6] in water, a silver complex was not obtained, but slow evaporation of the solution gave crystals of (IIIb) (Fig. 7), which proved to be isomorphous with (IIIa). The structural details for (IIIb) are very similar to those observed for (IIIa). Details concerning the hydrogen bonding are given in Table 4 and Fig. 8.