Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270105007250/gd1372sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270105007250/gd1372Isup2.hkl |
CCDC reference: 273021
Dimethyl sulfate (6 ml) was added dropwise to a solution of daidzein (4 g) in NaOH (50 ml, 5%) with vigorous stirring. The mixture was stirred at room temperature for 3 h and a precipitate appeared. This was collected by filtration and washed with water until the pH of the filtrate was 7, giving 4',7-dimethoxylisoflavone (3.5 g). 4',7-Dimethoxylisoflavone (2 g) was slowly added to sulfuric acid (8 ml, 98%) and stirred at room temperature. After 1 h, it was poured into a saturated NaCl solution (60 ml) and a white precipitate formed. This precipitate was collected by filtration and washed with saturated NaCl solution until the pH value of the filtrate was 7. Finally, the precipitate was recrystallized from water to afford sodium 4',7-dimethoxyisoflavone-3'-sulfonate (2.7 g). Sodium 4',7-dimethoxylisoflavone-3'-sulfonate (1 g) was dissolved in water (10 ml) and then mixed with a saturated NiSO4·7H2O solution (5 ml). Crystals of the title compound were obtained after 24 h. Compound (I) was recrystallized from ethanol–water (1:3 (v/v) after 3 d at room temperature, yielding crystals suitable for single-crystal X-ray analysis.
H atoms bonded to O atoms were found in difference maps and refined as riding. H atoms bonded to C atoms were placed in calculated positions (C—H = 0.93–0.96 Å) and refined as riding, allowing for free rotation of the rigid methyl groups. Uiso(H) values were constrained to be 1.2Ueq(C,O), or 1.5Ueq(C) for methyl H atoms.
Data collection: SMART (Bruker, 1999); cell refinement: SMART; data reduction: SAINT-Plus (Bruker, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1999); software used to prepare material for publication: SHELXTL.
[Ni(H2O)6](C17H13O4O3S)2·8H2O | F(000) = 1084 |
Mr = 1033.60 | Dx = 1.538 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5366 reflections |
a = 18.472 (4) Å | θ = 2.4–27.9° |
b = 7.3227 (15) Å | µ = 0.63 mm−1 |
c = 18.247 (4) Å | T = 298 K |
β = 115.293 (3)° | Prismatic, green |
V = 2231.4 (8) Å3 | 0.56 × 0.15 × 0.13 mm |
Z = 2 |
Bruker SMART CCD area-detector diffractometer | 3930 independent reflections |
Radiation source: fine-focus sealed tube | 3164 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ϕ and ω scans | θmax = 25.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | h = −21→16 |
Tmin = 0.721, Tmax = 0.923 | k = −8→8 |
11337 measured reflections | l = −21→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.092 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0491P)2 + 1.1606P] where P = (Fo2 + 2Fc2)/3 |
3930 reflections | (Δ/σ)max = 0.001 |
351 parameters | Δρmax = 0.34 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
[Ni(H2O)6](C17H13O4O3S)2·8H2O | V = 2231.4 (8) Å3 |
Mr = 1033.60 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 18.472 (4) Å | µ = 0.63 mm−1 |
b = 7.3227 (15) Å | T = 298 K |
c = 18.247 (4) Å | 0.56 × 0.15 × 0.13 mm |
β = 115.293 (3)° |
Bruker SMART CCD area-detector diffractometer | 3930 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | 3164 reflections with I > 2σ(I) |
Tmin = 0.721, Tmax = 0.923 | Rint = 0.026 |
11337 measured reflections |
R[F2 > 2σ(F2)] = 0.032 | 0 restraints |
wR(F2) = 0.092 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.34 e Å−3 |
3930 reflections | Δρmin = −0.28 e Å−3 |
351 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.5000 | 0.0000 | 0.5000 | 0.02926 (13) | |
O8 | 0.61866 (10) | −0.0050 (3) | 0.57842 (11) | 0.0416 (4) | |
O9 | 0.47970 (12) | 0.1997 (3) | 0.56790 (12) | 0.0441 (4) | |
H18 | 0.6360 (17) | −0.064 (4) | 0.6205 (18) | 0.055 (9)* | |
H19 | 0.6546 (19) | 0.080 (5) | 0.5860 (17) | 0.062 (9)* | |
H22 | 0.517 (2) | 0.267 (5) | 0.599 (2) | 0.091 (13)* | |
H23 | 0.442 (2) | 0.269 (5) | 0.542 (2) | 0.076 (11)* | |
O1 | 1.05629 (9) | 0.8234 (3) | 0.88924 (9) | 0.0431 (4) | |
O2 | 0.82401 (10) | 0.6913 (3) | 0.83461 (10) | 0.0521 (5) | |
O3 | 1.12693 (11) | 0.7767 (3) | 1.17217 (10) | 0.0550 (5) | |
O4 | 0.70265 (10) | 0.7795 (2) | 0.45826 (9) | 0.0391 (4) | |
O5 | 0.61869 (10) | 0.4999 (2) | 0.50467 (11) | 0.0440 (4) | |
O6 | 0.71703 (10) | 0.3078 (2) | 0.60392 (9) | 0.0410 (4) | |
O7 | 0.72439 (11) | 0.3713 (2) | 0.47673 (10) | 0.0452 (4) | |
S1 | 0.70164 (3) | 0.43741 (8) | 0.53829 (3) | 0.03134 (15) | |
C1 | 0.99910 (14) | 0.8166 (4) | 0.81213 (13) | 0.0397 (6) | |
H1 | 1.0147 | 0.8447 | 0.7713 | 0.048* | |
C2 | 0.92168 (13) | 0.7731 (3) | 0.78903 (13) | 0.0333 (5) | |
C3 | 0.89402 (13) | 0.7304 (3) | 0.85089 (13) | 0.0351 (5) | |
C4 | 0.95590 (13) | 0.7411 (3) | 0.93425 (13) | 0.0341 (5) | |
C5 | 0.93809 (15) | 0.7100 (4) | 1.00061 (14) | 0.0456 (6) | |
H5 | 0.8861 | 0.6800 | 0.9918 | 0.055* | |
C6 | 0.99625 (16) | 0.7232 (4) | 1.07804 (15) | 0.0492 (7) | |
H6 | 0.9834 | 0.7029 | 1.1214 | 0.059* | |
C7 | 1.07493 (15) | 0.7669 (3) | 1.09262 (13) | 0.0401 (6) | |
C8 | 1.09526 (14) | 0.7990 (3) | 1.02890 (13) | 0.0383 (6) | |
H8 | 1.1475 | 0.8274 | 1.0379 | 0.046* | |
C9 | 1.03391 (13) | 0.7867 (3) | 0.95047 (13) | 0.0335 (5) | |
C10 | 0.86384 (13) | 0.7767 (3) | 0.70214 (13) | 0.0313 (5) | |
C11 | 0.81630 (12) | 0.6251 (3) | 0.66491 (12) | 0.0305 (5) | |
H11 | 0.8209 | 0.5194 | 0.6949 | 0.037* | |
C12 | 0.76261 (12) | 0.6303 (3) | 0.58421 (12) | 0.0283 (5) | |
C13 | 0.75580 (12) | 0.7878 (3) | 0.53766 (12) | 0.0294 (5) | |
C14 | 0.80173 (13) | 0.9401 (3) | 0.57464 (13) | 0.0324 (5) | |
H14 | 0.7972 | 1.0460 | 0.5449 | 0.039* | |
C15 | 0.85407 (13) | 0.9337 (3) | 0.65568 (14) | 0.0350 (5) | |
H15 | 0.8837 | 1.0372 | 0.6801 | 0.042* | |
C16 | 1.20881 (17) | 0.8153 (5) | 1.19178 (16) | 0.0610 (8) | |
H16A | 1.2389 | 0.8182 | 1.2496 | 0.091* | |
H16B | 1.2127 | 0.9317 | 1.1695 | 0.091* | |
H16C | 1.2300 | 0.7221 | 1.1694 | 0.091* | |
C17 | 0.69152 (17) | 0.9398 (4) | 0.40979 (14) | 0.0453 (6) | |
H17A | 0.6525 | 0.9157 | 0.3555 | 0.068* | |
H17B | 0.7414 | 0.9733 | 0.4090 | 0.068* | |
H17C | 0.6731 | 1.0380 | 0.4323 | 0.068* | |
O11 | 0.67001 (13) | 0.7863 (3) | 0.71612 (11) | 0.0491 (5) | |
O12 | 0.60921 (14) | 0.4194 (4) | 0.67790 (13) | 0.0629 (6) | |
H24 | 0.718 (3) | 0.763 (6) | 0.742 (2) | 0.095 (14)* | |
H25 | 0.6511 (19) | 0.838 (5) | 0.7477 (18) | 0.065 (10)* | |
H26 | 0.644 (3) | 0.376 (6) | 0.661 (2) | 0.102 (14)* | |
H27 | 0.613 (3) | 0.546 (7) | 0.677 (3) | 0.115 (17)* | |
O13 | 0.61083 (14) | 0.5442 (4) | 0.31567 (14) | 0.0674 (6) | |
O14 | 0.53902 (16) | 0.2020 (3) | 0.27865 (13) | 0.0690 (6) | |
H28 | 0.610 (2) | 0.420 (6) | 0.301 (2) | 0.087 (13)* | |
H29 | 0.642 (3) | 0.526 (7) | 0.369 (3) | 0.15 (2)* | |
H30 | 0.4853 (13) | 0.177 (6) | 0.247 (2) | 0.122 (17)* | |
H31 | 0.563 (3) | 0.164 (8) | 0.245 (3) | 0.16 (2)* | |
O10 | 0.51971 (11) | 0.1977 (3) | 0.42963 (12) | 0.0435 (4) | |
H20 | 0.536 (2) | 0.290 (6) | 0.450 (2) | 0.090 (14)* | |
H21 | 0.524 (2) | 0.166 (6) | 0.385 (2) | 0.102 (14)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0266 (2) | 0.0268 (2) | 0.0323 (2) | −0.00109 (16) | 0.01056 (17) | 0.00014 (16) |
O8 | 0.0285 (9) | 0.0425 (11) | 0.0443 (10) | −0.0046 (8) | 0.0064 (8) | 0.0102 (9) |
O9 | 0.0388 (10) | 0.0405 (11) | 0.0465 (10) | 0.0051 (9) | 0.0119 (9) | −0.0092 (9) |
O1 | 0.0306 (8) | 0.0649 (12) | 0.0337 (8) | −0.0092 (8) | 0.0137 (7) | −0.0050 (8) |
O2 | 0.0313 (9) | 0.0798 (14) | 0.0431 (10) | −0.0082 (9) | 0.0138 (8) | 0.0061 (9) |
O3 | 0.0562 (11) | 0.0679 (13) | 0.0325 (9) | −0.0018 (10) | 0.0109 (8) | −0.0024 (9) |
O4 | 0.0479 (10) | 0.0306 (9) | 0.0306 (8) | −0.0044 (7) | 0.0089 (7) | 0.0030 (7) |
O5 | 0.0319 (9) | 0.0345 (10) | 0.0567 (11) | −0.0037 (7) | 0.0104 (8) | 0.0007 (8) |
O6 | 0.0467 (10) | 0.0310 (9) | 0.0397 (9) | −0.0075 (7) | 0.0130 (8) | 0.0038 (7) |
O7 | 0.0582 (11) | 0.0374 (10) | 0.0443 (9) | −0.0049 (8) | 0.0261 (8) | −0.0125 (8) |
S1 | 0.0328 (3) | 0.0248 (3) | 0.0339 (3) | −0.0033 (2) | 0.0119 (2) | −0.0016 (2) |
C1 | 0.0365 (13) | 0.0515 (16) | 0.0305 (12) | −0.0045 (11) | 0.0136 (10) | −0.0043 (10) |
C2 | 0.0333 (12) | 0.0324 (13) | 0.0330 (11) | −0.0011 (10) | 0.0130 (10) | −0.0034 (9) |
C3 | 0.0324 (12) | 0.0342 (13) | 0.0391 (12) | 0.0004 (10) | 0.0158 (10) | 0.0007 (10) |
C4 | 0.0327 (12) | 0.0335 (13) | 0.0369 (12) | 0.0000 (10) | 0.0157 (10) | −0.0001 (10) |
C5 | 0.0405 (14) | 0.0581 (17) | 0.0428 (14) | −0.0044 (12) | 0.0221 (11) | 0.0040 (12) |
C6 | 0.0543 (16) | 0.0605 (18) | 0.0375 (13) | −0.0037 (14) | 0.0240 (12) | 0.0040 (12) |
C7 | 0.0463 (14) | 0.0372 (14) | 0.0319 (12) | 0.0013 (11) | 0.0122 (11) | −0.0007 (10) |
C8 | 0.0341 (12) | 0.0403 (14) | 0.0380 (12) | −0.0013 (11) | 0.0129 (10) | −0.0040 (10) |
C9 | 0.0357 (12) | 0.0330 (13) | 0.0354 (12) | −0.0008 (10) | 0.0187 (10) | −0.0022 (10) |
C10 | 0.0291 (11) | 0.0333 (13) | 0.0329 (11) | −0.0008 (10) | 0.0144 (9) | −0.0030 (9) |
C11 | 0.0327 (11) | 0.0279 (12) | 0.0316 (11) | 0.0016 (10) | 0.0144 (9) | 0.0025 (9) |
C12 | 0.0294 (11) | 0.0256 (12) | 0.0321 (11) | −0.0019 (9) | 0.0152 (9) | −0.0037 (9) |
C13 | 0.0295 (11) | 0.0287 (12) | 0.0315 (11) | 0.0016 (9) | 0.0147 (9) | −0.0003 (9) |
C14 | 0.0363 (12) | 0.0251 (11) | 0.0383 (12) | −0.0009 (10) | 0.0184 (10) | 0.0010 (9) |
C15 | 0.0335 (12) | 0.0320 (12) | 0.0407 (12) | −0.0065 (10) | 0.0172 (10) | −0.0077 (10) |
C16 | 0.0500 (17) | 0.075 (2) | 0.0415 (15) | 0.0022 (15) | 0.0039 (13) | −0.0097 (14) |
C17 | 0.0562 (16) | 0.0360 (14) | 0.0378 (13) | 0.0041 (12) | 0.0144 (12) | 0.0077 (11) |
O11 | 0.0411 (11) | 0.0621 (13) | 0.0395 (10) | 0.0039 (10) | 0.0129 (9) | 0.0033 (9) |
O12 | 0.0638 (14) | 0.0642 (16) | 0.0706 (14) | −0.0108 (12) | 0.0381 (12) | −0.0112 (12) |
O13 | 0.0731 (15) | 0.0766 (18) | 0.0453 (12) | −0.0123 (13) | 0.0184 (11) | 0.0036 (11) |
O14 | 0.0813 (17) | 0.0704 (16) | 0.0524 (12) | 0.0003 (13) | 0.0259 (12) | −0.0018 (11) |
O10 | 0.0499 (11) | 0.0394 (11) | 0.0406 (10) | −0.0111 (9) | 0.0188 (8) | 0.0005 (8) |
Ni1—O8i | 2.0427 (17) | C6—C7 | 1.398 (4) |
Ni1—O8 | 2.0427 (17) | C6—H6 | 0.9300 |
Ni1—O9 | 2.0522 (18) | C7—C8 | 1.386 (3) |
Ni1—O9i | 2.0522 (18) | C8—C9 | 1.398 (3) |
Ni1—O10 | 2.0678 (18) | C8—H8 | 0.9300 |
Ni1—O10i | 2.0678 (18) | C10—C15 | 1.393 (3) |
O8—H18 | 0.82 (3) | C10—C11 | 1.399 (3) |
O8—H19 | 0.88 (3) | C11—C12 | 1.380 (3) |
O9—H22 | 0.84 (4) | C11—H11 | 0.9300 |
O9—H23 | 0.83 (4) | C12—C13 | 1.405 (3) |
O1—C1 | 1.352 (3) | C13—C14 | 1.389 (3) |
O1—C9 | 1.373 (3) | C14—C15 | 1.379 (3) |
O2—C3 | 1.230 (3) | C14—H14 | 0.9300 |
O3—C7 | 1.358 (3) | C15—H15 | 0.9300 |
O3—C16 | 1.426 (3) | C16—H16A | 0.9600 |
O4—C13 | 1.361 (3) | C16—H16B | 0.9600 |
O4—C17 | 1.431 (3) | C16—H16C | 0.9600 |
O5—S1 | 1.4594 (18) | C17—H17A | 0.9600 |
O6—S1 | 1.4580 (16) | C17—H17B | 0.9600 |
O7—S1 | 1.4408 (17) | C17—H17C | 0.9600 |
S1—C12 | 1.778 (2) | O11—H24 | 0.82 (4) |
C1—C2 | 1.345 (3) | O11—H25 | 0.88 (3) |
C1—H1 | 0.9300 | O12—H26 | 0.87 (4) |
C2—C3 | 1.458 (3) | O12—H27 | 0.93 (5) |
C2—C10 | 1.486 (3) | O13—H28 | 0.94 (4) |
C3—C4 | 1.463 (3) | O13—H29 | 0.90 (6) |
C4—C9 | 1.383 (3) | O14—H30 | 0.928 (19) |
C4—C5 | 1.402 (3) | O14—H31 | 0.94 (6) |
C5—C6 | 1.365 (3) | O10—H20 | 0.77 (4) |
C5—H5 | 0.9300 | O10—H21 | 0.88 (4) |
O8i—Ni1—O8 | 180.00 (11) | C7—C6—H6 | 119.7 |
O8i—Ni1—O9 | 89.54 (8) | O3—C7—C8 | 124.5 (2) |
O8—Ni1—O9 | 90.46 (8) | O3—C7—C6 | 114.8 (2) |
O8i—Ni1—O9i | 90.46 (8) | C8—C7—C6 | 120.7 (2) |
O8—Ni1—O9i | 89.54 (8) | C7—C8—C9 | 117.1 (2) |
O9—Ni1—O9i | 180.0 | C7—C8—H8 | 121.4 |
O8i—Ni1—O10 | 88.48 (8) | C9—C8—H8 | 121.4 |
O8—Ni1—O10 | 91.52 (8) | O1—C9—C4 | 121.45 (19) |
O9—Ni1—O10 | 90.12 (9) | O1—C9—C8 | 115.2 (2) |
O9i—Ni1—O10 | 89.88 (9) | C4—C9—C8 | 123.3 (2) |
O8i—Ni1—O10i | 91.52 (8) | C15—C10—C11 | 117.92 (19) |
O8—Ni1—O10i | 88.48 (8) | C15—C10—C2 | 120.7 (2) |
O9—Ni1—O10i | 89.88 (9) | C11—C10—C2 | 121.3 (2) |
O9i—Ni1—O10i | 90.12 (9) | C12—C11—C10 | 120.8 (2) |
O10—Ni1—O10i | 180.0 | C12—C11—H11 | 119.6 |
Ni1—O8—H18 | 123 (2) | C10—C11—H11 | 119.6 |
Ni1—O8—H19 | 128 (2) | C11—C12—C13 | 120.4 (2) |
H18—O8—H19 | 105 (3) | C11—C12—S1 | 120.15 (17) |
Ni1—O9—H22 | 121 (3) | C13—C12—S1 | 119.47 (16) |
Ni1—O9—H23 | 114 (2) | O4—C13—C14 | 124.46 (19) |
H22—O9—H23 | 106 (4) | O4—C13—C12 | 116.41 (19) |
C1—O1—C9 | 117.81 (18) | C14—C13—C12 | 119.13 (19) |
C7—O3—C16 | 118.0 (2) | C15—C14—C13 | 119.7 (2) |
C13—O4—C17 | 118.01 (18) | C15—C14—H14 | 120.1 |
O7—S1—O6 | 113.72 (11) | C13—C14—H14 | 120.1 |
O7—S1—O5 | 112.40 (11) | C14—C15—C10 | 122.0 (2) |
O6—S1—O5 | 110.52 (10) | C14—C15—H15 | 119.0 |
O7—S1—C12 | 107.29 (10) | C10—C15—H15 | 119.0 |
O6—S1—C12 | 105.57 (10) | O3—C16—H16A | 109.5 |
O5—S1—C12 | 106.80 (10) | O3—C16—H16B | 109.5 |
C2—C1—O1 | 126.0 (2) | H16A—C16—H16B | 109.5 |
C2—C1—H1 | 117.0 | O3—C16—H16C | 109.5 |
O1—C1—H1 | 117.0 | H16A—C16—H16C | 109.5 |
C1—C2—C3 | 119.0 (2) | H16B—C16—H16C | 109.5 |
C1—C2—C10 | 120.9 (2) | O4—C17—H17A | 109.5 |
C3—C2—C10 | 119.99 (19) | O4—C17—H17B | 109.5 |
O2—C3—C2 | 122.9 (2) | H17A—C17—H17B | 109.5 |
O2—C3—C4 | 122.5 (2) | O4—C17—H17C | 109.5 |
C2—C3—C4 | 114.64 (19) | H17A—C17—H17C | 109.5 |
C9—C4—C5 | 117.5 (2) | H17B—C17—H17C | 109.5 |
C9—C4—C3 | 121.0 (2) | H24—O11—H25 | 110 (3) |
C5—C4—C3 | 121.5 (2) | H26—O12—H27 | 107 (4) |
C6—C5—C4 | 120.7 (2) | H28—O13—H29 | 95 (4) |
C6—C5—H5 | 119.6 | H30—O14—H31 | 102 (4) |
C4—C5—H5 | 119.6 | Ni1—O10—H20 | 117 (3) |
C5—C6—C7 | 120.5 (2) | Ni1—O10—H21 | 120 (3) |
C5—C6—H6 | 119.7 | H20—O10—H21 | 120 (4) |
C9—O1—C1—C2 | −1.5 (4) | C7—C8—C9—C4 | −1.4 (4) |
O1—C1—C2—C3 | 0.8 (4) | C1—C2—C10—C15 | −55.0 (3) |
O1—C1—C2—C10 | 177.9 (2) | C3—C2—C10—C15 | 122.1 (2) |
C1—C2—C3—O2 | 179.2 (2) | C1—C2—C10—C11 | 126.5 (3) |
C10—C2—C3—O2 | 2.1 (4) | C3—C2—C10—C11 | −56.4 (3) |
C1—C2—C3—C4 | 0.3 (3) | C15—C10—C11—C12 | 1.3 (3) |
C10—C2—C3—C4 | −176.8 (2) | C2—C10—C11—C12 | 179.8 (2) |
O2—C3—C4—C9 | −179.5 (2) | C10—C11—C12—C13 | 1.1 (3) |
C2—C3—C4—C9 | −0.6 (3) | C10—C11—C12—S1 | −179.08 (16) |
O2—C3—C4—C5 | −1.1 (4) | O7—S1—C12—C11 | −115.62 (18) |
C2—C3—C4—C5 | 177.8 (2) | O6—S1—C12—C11 | 6.0 (2) |
C9—C4—C5—C6 | −0.5 (4) | O5—S1—C12—C11 | 123.65 (18) |
C3—C4—C5—C6 | −179.0 (2) | O7—S1—C12—C13 | 64.24 (19) |
C4—C5—C6—C7 | −0.4 (4) | O6—S1—C12—C13 | −174.16 (17) |
C16—O3—C7—C8 | −2.7 (4) | O5—S1—C12—C13 | −56.49 (19) |
C16—O3—C7—C6 | 178.1 (3) | C17—O4—C13—C14 | −1.7 (3) |
C5—C6—C7—O3 | 179.7 (3) | C17—O4—C13—C12 | 177.3 (2) |
C5—C6—C7—C8 | 0.5 (4) | C11—C12—C13—O4 | 178.63 (19) |
O3—C7—C8—C9 | −178.7 (2) | S1—C12—C13—O4 | −1.2 (3) |
C6—C7—C8—C9 | 0.4 (4) | C11—C12—C13—C14 | −2.3 (3) |
C1—O1—C9—C4 | 1.1 (3) | S1—C12—C13—C14 | 177.87 (16) |
C1—O1—C9—C8 | −178.9 (2) | O4—C13—C14—C15 | −179.8 (2) |
C5—C4—C9—O1 | −178.6 (2) | C12—C13—C14—C15 | 1.1 (3) |
C3—C4—C9—O1 | −0.1 (4) | C13—C14—C15—C10 | 1.2 (3) |
C5—C4—C9—C8 | 1.5 (4) | C11—C10—C15—C14 | −2.4 (3) |
C3—C4—C9—C8 | 179.9 (2) | C2—C10—C15—C14 | 179.0 (2) |
C7—C8—C9—O1 | 178.6 (2) |
Symmetry code: (i) −x+1, −y, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O8—H18···O11ii | 0.82 (3) | 1.93 (3) | 2.741 (3) | 176 (3) |
O8—H19···O6 | 0.88 (3) | 1.97 (4) | 2.836 (3) | 167 (3) |
O9—H22···O12 | 0.84 (4) | 2.03 (4) | 2.870 (3) | 178 (4) |
O9—H23···O5iii | 0.83 (4) | 2.01 (4) | 2.800 (3) | 161 (3) |
O10—H20···O5 | 0.77 (4) | 2.09 (4) | 2.824 (3) | 159 (4) |
O10—H21···O14 | 0.88 (4) | 2.10 (4) | 2.925 (3) | 158 (4) |
O11—H24···O2 | 0.82 (4) | 2.03 (4) | 2.827 (3) | 162 (4) |
O11—H25···O13iv | 0.88 (3) | 1.90 (3) | 2.781 (3) | 179 (3) |
O12—H26···O6 | 0.87 (4) | 2.10 (4) | 2.959 (3) | 169 (4) |
O12—H27···O11 | 0.93 (5) | 2.02 (5) | 2.880 (3) | 153 (4) |
O13—H28···O14 | 0.94 (4) | 1.99 (4) | 2.780 (4) | 140 (3) |
O13—H29···O7 | 0.90 (6) | 2.21 (6) | 3.061 (3) | 156 (5) |
O13—H29···O4 | 0.90 (6) | 2.41 (5) | 2.974 (3) | 121 (4) |
O14—H30···O13v | 0.93 (2) | 1.92 (2) | 2.809 (4) | 161 (4) |
O14—H31···O12vi | 0.94 (6) | 1.87 (6) | 2.808 (3) | 179 (5) |
Symmetry codes: (ii) x, y−1, z; (iii) −x+1, −y+1, −z+1; (iv) x, −y+3/2, z+1/2; (v) −x+1, y−1/2, −z+1/2; (vi) x, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [Ni(H2O)6](C17H13O4O3S)2·8H2O |
Mr | 1033.60 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 18.472 (4), 7.3227 (15), 18.247 (4) |
β (°) | 115.293 (3) |
V (Å3) | 2231.4 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.63 |
Crystal size (mm) | 0.56 × 0.15 × 0.13 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1999) |
Tmin, Tmax | 0.721, 0.923 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11337, 3930, 3164 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.092, 1.00 |
No. of reflections | 3930 |
No. of parameters | 351 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.34, −0.28 |
Computer programs: SMART (Bruker, 1999), SMART, SAINT-Plus (Bruker, 1999), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1999), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
O8—H18···O11i | 0.82 (3) | 1.93 (3) | 2.741 (3) | 176 (3) |
O8—H19···O6 | 0.88 (3) | 1.97 (4) | 2.836 (3) | 167 (3) |
O9—H22···O12 | 0.84 (4) | 2.03 (4) | 2.870 (3) | 178 (4) |
O9—H23···O5ii | 0.83 (4) | 2.01 (4) | 2.800 (3) | 161 (3) |
O10—H20···O5 | 0.77 (4) | 2.09 (4) | 2.824 (3) | 159 (4) |
O10—H21···O14 | 0.88 (4) | 2.10 (4) | 2.925 (3) | 158 (4) |
O11—H24···O2 | 0.82 (4) | 2.03 (4) | 2.827 (3) | 162 (4) |
O11—H25···O13iii | 0.88 (3) | 1.90 (3) | 2.781 (3) | 179 (3) |
O12—H26···O6 | 0.87 (4) | 2.10 (4) | 2.959 (3) | 169 (4) |
O12—H27···O11 | 0.93 (5) | 2.02 (5) | 2.880 (3) | 153 (4) |
O13—H28···O14 | 0.94 (4) | 1.99 (4) | 2.780 (4) | 140 (3) |
O13—H29···O7 | 0.90 (6) | 2.21 (6) | 3.061 (3) | 156 (5) |
O13—H29···O4 | 0.90 (6) | 2.41 (5) | 2.974 (3) | 121 (4) |
O14—H30···O13iv | 0.928 (19) | 1.92 (2) | 2.809 (4) | 161 (4) |
O14—H31···O12v | 0.94 (6) | 1.87 (6) | 2.808 (3) | 179 (5) |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, −y+1, −z+1; (iii) x, −y+3/2, z+1/2; (iv) −x+1, y−1/2, −z+1/2; (v) x, −y+1/2, z−1/2. |
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Daidzein (4',7-dihydroxyisoflavone) is one of the effective principals of soy isoflavone. It has been pharmacologically shown to be antidysrhythmic (Fan et al., 1985) and antioxidant (Meng et al., 1999; Tikkanen et al., 1998), to remove hyperkinesias (Guo et al., 1995), to inhibit the growth of cancer cells (Jing & Han, 1992; Sathyamoorthy & Wang, 1997; Jing et al., 1993), to accelerate the formation of bone cells (Emi & Masayoshi, 2000) and to mimic a female hormone (Miksicek, 1993). Because the solubility of daidzein is poor, its biological utilization rate is low (Tang et al., 1989). Thus, it is necessary to synthesize a water-soluble derivative of daidzein in order to study its possible biological effects. We have synthesized several derivatives of daidzein, namely sodium 7-methoxy-4'-hydroxyisoflavone-3'-sulfonate (Zhang et al., 2002), sodium 4',7-dihydroxyisoflavone-3'-sulfonate (Zhang et al., 2003) and sodium 5,7-dihydroxy-4',6-dimethoxyisoflavone-3'-sulfonate (Zhang et al., 2004), and have studied their crystal structures and biological activities. The results showed that they possess better biological activities than daidzein. The title compound, (I), is a water-soluble derivative of daidzein with potential medical applications, and we report its crystal structure here.
Compound (I) consists of an [Ni(H2O)6]2+ cation, two C17H13O4SO3− sulfonate anions and eight lattice water molecules (Fig. 1)·The NiII atom lies on an inversion centre and is coordinated by six water molecules which form a slightly distorted octahedron, in which the average Ni—O bond length is 2.0541 Å. In the C17H13O4SO3− anion, the bond lengths and angles of the isoflavone skeleton are similar to those in magnesium 7-methoxy-4'-hydroxyisoflavone-3'-sulfonate (Zhang et al., 2003) and in cobalt 7-methoxy-4'-hydroxyisoflavone-3'-sulfonate (Zhang et al., 2002). The atoms in the benzopyranone moiety are nearly coplanar, as the dihedral angle between ring A (C4–C9) and ring C (C1–C4/C9/O1) is only 1.6°. To avoid steric conflict, the two rigid ring systems, namely phenyl ring B (C10–C15) and the benzopyranone moiety, are rotated by 56.5° with respect to each other. The methoxy group at atom C7 is nearly coplanar with the benzopyranone moiety, as indicated by the C16—O3—C7—C8 torsion angle of 2.7°. The methoxy group at atom C13 is also nearly coplanar with the attached ring, the C17—O4—C13—C14 torsion angle being 1.7°.
The sulfate (–SO3), carbonyl (–C═O) and methoxy (–OCH3) substituents of the isoflavone units, the eight lattice water molecules and the six coordinated water molecules are linked by hydrogen bonds (Table 1, Fig 1). Atoms H20 and H19 from the coordinated water molecules, as donors, form hydrogen bonds with two O atoms (O5 and O6) of the sulfate group of the isoflavone skeleton, which can be observed for the hydrogen bonds O10—H20···O5 and O8—H19···O6. Two hydrogen-bond chains exist between the isoflavone skeleton and the coordinated water molecules, bridged by the lattice water molecules O11 and O12, and O13 and O14, respectively. Each chain contains three hydrogen bonds, O11—H24···O2, O12—H27···O11 and O9—H22···O12, and O13—H29···O4, O13—H28···O14 and O10—H21···O14. The hydrogen bonds O12—H26···O6 and O13—H29···O7 exist between the O atoms (O6 and O7) of the sulfate group of the isoflavone skeleton and the lattice water molecules O12 and O13, respectively. In the hydrogen bonds O13—H29···O7 and O13—H29···O4, atom H29, as donor, forms one tricentred hydrogen bond with atoms O7 and O4. Atom O6 acts as acceptor for atoms H19 and H26 to form another tricentred hydrogen bond, which includes the hydrogen bonds O8—H19···O6 and O12—H26···O6. The lattice water molecules O12 and O13 are involved in the formation of three hydrogen bonds. All these hydrogen bonds not only link the isoflavone skeletons, coordinated water molecules and lattice water molecules together, but also play very important roles in the formation, stability and crystallization of (I).
The isoflavone skeletons are arranged in an antiparallel fashion and π–π stacking interactions exist between their rings A (C4–C9), linking the isoflavone skeletons into a column along the b axis (Fig. 2). Rings A of the isoflavone skeleton stack with those of neighbouring isoflavone skeletons, with Cg···Cg# = 3.644 (2) Å and Cg···Cg* = 3.773 (2) Å, where Cg is the centroid of ring A at (x, y, z), and Cg# and Cg* are the centres of rings A of the neighbouring isoflavone skeletons at (2 − x, 2 − y, 2 − z) and (2 − x, 1 − y, 2 − z), respectively. The corresponding interplanar spacings are 3.540 (2) and 3.567 (2) Å. Both of the ring–centroid distances lie in the normal range of 3.3–3.8 Å (Janiak, 2000), indicative of π–π stacking interactions.
Finally, it is noteworthy that compound (I) has a special packing motif (Fig.3). The coordinated water molecules, sulfate group and carbonyl are all hydrophilic. The distance between them is short and the areas which are surrounded by them are filled with the lattice water molecules. Therefore, there are hydrogen-bond networks in these areas. Apart from the hydrogen bonds involved in Fig. 1, the hydrogen bond O8—H18···O11i exists between the coordinated and lattice water molecules, O9—H23···O5ii exists between the sulfate group of the isoflavone skeleton and the coordinated water molecule, and O11—H25···O13iii, O14—H30···O13iv and O14—H31···O12v are all hydrogen bonds between the lattice water molecules (Table 1). By contrast, there are no hydrophilic groups or hydrogen bonds in the hydrophobic areas formed by the isoflavone moieties. In these hydrophobic areas, the isoflavone skeletons are arranged in an antiparallel fashion, and π–π stacking interactions exist between them. The sulfate group is an important bridge as a structural link between the hydrophilic and hydrophobic regions. The hydrogen bonds, π–π stacking interactions and electrostatic interactions between the cation [Ni(H2O)6]2+ cation and the C17H13O4SO3− sulfonate anion lead to the formation of a three-dimensional supramolecular structure.