Buy article online - an online subscription or single-article purchase is required to access this article.
Download citation
Download citation
link to html
In both 1-(2-cyano­ethyl)thymine [systematic name: 3-(5-methyl-2,4-dioxo-1,2,3,4-tetra­hydro­pyrimidin-1-yl)propane­nitrile], C8H9N3O2, (I), and 1-(3-cyano­propyl)thymine [systematic name: 4-(5-methyl-2,4-dioxo-1,2,3,4-tetra­hydro­pyrimidin-1-yl)butane­nitrile], C9H11N3O2, (II), the core of the supra­molecular structure is formed by centrosymmetric dimers generated by N—H...O hydrogen bonds. Further weak hydrogen bonds of C—H...O and C—H...N types generate mol­ecular tapes and sheets that resemble those in uracil and its methyl derivatives. The steric hindrance that arises from the cyano­alkyl substituents perturbs the conformations of the tapes and sheets.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270107006385/gd3083sup1.cif
Contains datablocks I, II, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270107006385/gd3083Isup2.hkl
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270107006385/gd3083IIsup3.hkl
Contains datablock II

CCDC references: 641821; 641822

Comment top

In the course of our studies of the hierarchy of intermolecular interactions in crystals (Borowiak et al., 2006; Kubicki et al., 2001, 2002; Kubicki, 2004), the supramolecular structures of two thymine derivatives, 1-(2-cyanoethyl)thymine, (I), and 1-(3-cyanopropyl)thymine, (II), have been determined. Both molecules contain a planar thymine ring and, of the several possible tautomeric forms for the ring, the diketo tautomer is observed in the solid state (Figs. 1 and 2). Appreciable differences are observed in the values of the CO bond lengths [C2O2 = 1.216 (1) and 1.221 (1) Å for (I) and (II), respectively; C4O4 = 1.233 (1) and 1.237 (2) Å for (I) and (II), respectively]. The existence of two different CO groups can be easily rationalized by observing the respective crystal structures.

In (I) and (II), centrosymmetric dimers are formed via N3—H3···O4 C4 hydrogen bonds. For this reason, C4O4 is longer than the standard carbonyl double bond (Standard reference?). The second carbonyl group, C2O2, is involved only in weak C—H···O hydrogen bonds (Table 1 and 2), and this bond is shorter [Than what?]. The geometric perturbation is mainly due to self-association and confirms the fundamental role of conjugative stabilization of the intermolecular hydrogen bonding.

The CO bond-length pattern in (I) and (II) is in agreement with those in other uracil derivatives. In the structure of (1-thyminyl)acetamide (Borowiak et al., 2006), the centrosymmetric dimers are formed via N3—H3···O2C2 hydrogen bonds and, in consequence, the C2O2 bond is longer. Similar appreciable discrepancies in the CO bond lengths have also been found in the structures of uracil (Portalone et al., 1999), thymine (Portalone et al., 1999) or 1-methyluracil (McMullan & Craven, 1989). The hydrogen bonding in the crystal structures of uracil and 1-methyluracil involves atom O4 as acceptor of a strong hydrogen bond but not atom O2. In the structure of 1,3-dimethyluracil, the equivalence of the carbonyl groups is explained by the fact that no CO···H—N hydrogen bond is possible (Banerjee et al., 1977).

Although the molecules of (I) and (II) differ only by one CH2 group in the substituent at N1 and intermolecular interactions are of the same type, the supramolecular motifs in their crystal structures differ due to the steric factor determined by the length of the chain. The centrosymmetric dimers form the cores of the supramolecular structures, which are further based on continuous tapes.

In (I), the planar N3—H3···O4 dimers are connected by C12—H12B···O2 and C11—H11B···O2 hydrogen bonds, thus forming the second kind of dimer, a non-centrosymmetric one (Fig. 3a). These two consecutive dimers extend to form a molecular tape. On the other hand, two centrosymmetric dimers separated by a non-centrosymmetric one in each tape are set almost perpendicular to one another, giving rise to a sinusoidal shape of tapes (the angle between the planes of two flat dimers is about 78° (Fig. 3b).

The tapes are connected in turn by weak C6—H6···N13 hydrogen bonds. Moreover, the thymine moieties of (I) are mutually oriented in a parallel mode along the shortest unit cell axis [b = 4.412 (1) Å] (Fig. 3b). As a consequence of the tape conformation, two different orientations of columns are observed, with the distance between mutually parallel rings being 3.42 (1) Å. The stacking of molecules in (I) occurs with no overlap of pyrimidine rings.

In (II), the core of the supramolecular structure is also defined by centrosymmetric dimers formed via the same type of hydrogen bonds, N3—H3···O4 (Table 2). These dimers are further connected by weak C12—H12B···O2 hydrogen bonds that form another centrosymmetric dimer (Fig. 4a). These consecutive dimers are linked into continuous tapes which are, however, not planar, as small steps are found in their conformation (Fig. 4b).

The tapes are further connected into sheets by the third type of centrosymmetric dimer created via weak C6—H6···N14 hydrogen bonds (Fig. 4a). The same steps occur in the conformation of the sheets. As in (I), the uracil moieties in (II) also form a parallel mode of packing along the shortest unit cell axis [a = 4.859 (1) Å]. Also in (II), no overlap of the pyrimidine rings is observed.

The features of the supramolecular structures of uracil and its methyl derivatives are retained in compounds (I) and (II), although steric hindrance causes disturbances in the conformations of the tapes and sheets. No carbonyl–carbonyl interactions are found, although this kind of interaction is able to compete successfully with hydrogen bonds (Allen et al., 1998).

Related literature top

For related literature, see: Allen et al. (1998); Banerjee et al. (1977); Borowiak et al. (2006); Kubicki (2004); Kubicki et al. (2001, 2002); McMullan & Craven (1989); Portalone et al. (1999); Spychała (2000).

Experimental top

The synthesis of 1-(3-cyanopropyl)thymine, (II), was described by Spychała (2000). Crystals of (II) suitable for X-ray data collection were grown from a solution in methanol by slow cooling. 1-(2-Cyanoethyl)thymine, (I), was prepared by the same N-alkylation procedure from thymine and 3-bromopropionitrile and recrystallized from methanol (m.p. 472–474 K). Spectroscopic analysis: 1H NMR (DMSO-d6, TMS, δ, p.p.m.): 1.75 (s, 3H, CH3), 2.88 (t, 2H, J = 6.4 Hz, CH2), 3.89 (t, 2H, J = 6.6 Hz, CH2), 7.55 (s, 1H, C6H), 11.33 (br s, 1H, N3H); 13C NMR (DMSO-d6, TMS, δ, p.p.m.): 11.9, 16.8, 43.0, 99.8, 108.8, 118.8, 150.7, 164.2; FT–IR (KBr, νmax, cm-1): 3032, 2831, 2245, 1720, 1666, 1480, 1459, 1430, 1389; HRMS (EI): M+, found 179.0693; C8H9N3O2 requires 179.0695. The instrumentation and analysis methods have been described by Spychała (2000).

Computing details top

For both compounds, data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell refinement: CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: Stereochemical Workstation Operation Manual (Siemens, 1989) and Mercury (Macrae et al., 2006); software used to prepare material for publication: Please provide missing details.

Figures top
[Figure 1] Fig. 1. A view of the molecule of (I), with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level and H atoms are depicted as spheres of arbitrary radii.
[Figure 2] Fig. 2. A view of the molecule of (II), with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level and H atoms are depicted as spheres of arbitrary radii.
[Figure 3] Fig. 3. (a) The molecular tapes in (I) generated by N3–H3···O4i hydrogen bonds and by weak C11—H11B···O2ii and C12—H12A···O2ii hydrogen bonds. C6—H6···N13iv hydrogen bonds connect the tapes. Hydrogen bonds are indicated by dotted lines. [Symmetry codes: (i) -x + 1, -y + 2, -z, (ii) -x + 1, 1/2 + y, 1/2 - z, (iii) -x + 2, 1/2 + y, 1/2 - z.] (b) The molecular tapes in (I), expanded along the c axis. A sinusoidal conformation of the tapes is shown. Hydrogen bonds are indicated by dotted lines.
[Figure 4] Fig. 4. (a) The molecular tapes in (II) generated by two consecutive centrosymmetric dimers: one of them via N3—H3···O4i and the other via weak C12—H12B···O2iv hydrogen bonds. The C6—H6···N14ii hydrogen bonds connect the tapes into sheets. Hydrogen bonds are indicated by dotted lines. [Symmetry codes: (i) -x, -y + 1, -z + 1, (ii) -x + 2, -y, -z + 2, (iii) -x, -y + 1, -z + 2.] (b) The molecular tape in (II), expanded along the c axis. Small steps in the tape and sheet conformations are shown.
(I) 3-(5-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)propanenitrile top
Crystal data top
C8H9N3O2F(000) = 376
Mr = 179.18Dx = 1.374 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 11.2597 (4) ÅCell parameters from 3997 reflections
b = 4.4118 (2) Åθ = 2.3–29.6°
c = 17.6256 (6) ŵ = 0.10 mm1
β = 98.253 (3)°T = 293 K
V = 866.49 (6) Å3Block, colourless
Z = 40.45 × 0.2 × 0.2 mm
Data collection top
Kuma KM4 CCD area-detector
diffractometer
2187 independent reflections
Radiation source: fine-focus sealed tube1423 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
ω scansθmax = 29.6°, θmin = 2.3°
Absorption correction: multi-scan
CrysAlis RED (Oxford Diffraction 2006)
h = 1515
Tmin = 0.837, Tmax = 0.980k = 55
8802 measured reflectionsl = 2322
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117All H-atom parameters refined
S = 1.04 w = 1/[σ2(Fo2) + (0.0659P)2 + 0.0478P]
where P = (Fo2 + 2Fc2)/3
2187 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = 0.20 e Å3
Crystal data top
C8H9N3O2V = 866.49 (6) Å3
Mr = 179.18Z = 4
Monoclinic, P21/cMo Kα radiation
a = 11.2597 (4) ŵ = 0.10 mm1
b = 4.4118 (2) ÅT = 293 K
c = 17.6256 (6) Å0.45 × 0.2 × 0.2 mm
β = 98.253 (3)°
Data collection top
Kuma KM4 CCD area-detector
diffractometer
2187 independent reflections
Absorption correction: multi-scan
CrysAlis RED (Oxford Diffraction 2006)
1423 reflections with I > 2σ(I)
Tmin = 0.837, Tmax = 0.980Rint = 0.018
8802 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0370 restraints
wR(F2) = 0.117All H-atom parameters refined
S = 1.04Δρmax = 0.19 e Å3
2187 reflectionsΔρmin = 0.20 e Å3
154 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.69015 (9)0.4338 (2)0.16614 (5)0.0330 (3)
C20.57613 (10)0.5355 (3)0.13772 (7)0.0328 (3)
O20.48757 (8)0.4579 (2)0.16478 (5)0.0470 (3)
N30.57166 (9)0.7327 (3)0.07725 (6)0.0355 (3)
H30.4986 (15)0.804 (3)0.0571 (8)0.048 (4)*
C40.66662 (11)0.8317 (3)0.04233 (7)0.0349 (3)
O40.65004 (8)1.0135 (2)0.01110 (5)0.0503 (3)
C50.78282 (10)0.7107 (3)0.07342 (7)0.0345 (3)
C60.78883 (11)0.5213 (3)0.13305 (7)0.0341 (3)
C110.70402 (13)0.2323 (3)0.23290 (7)0.0375 (3)
H11A0.7741 (13)0.116 (3)0.2274 (8)0.042 (4)*
H11B0.6311 (13)0.113 (4)0.2313 (8)0.044 (4)*
C120.72076 (13)0.4038 (4)0.30899 (8)0.0416 (3)
H12A0.7238 (13)0.257 (3)0.3547 (8)0.053 (4)*
H12B0.6548 (15)0.530 (4)0.3159 (9)0.055 (4)*
C130.83109 (14)0.5819 (4)0.31961 (8)0.0483 (4)
N130.91629 (13)0.7239 (4)0.32592 (8)0.0734 (5)
C510.88965 (13)0.8001 (5)0.03697 (9)0.0513 (4)
H51A0.8989 (17)1.027 (5)0.0298 (12)0.086 (6)*
H51B0.8827 (15)0.719 (4)0.0157 (11)0.071 (5)*
H51C0.9619 (16)0.713 (4)0.0613 (10)0.070 (5)*
H60.8604 (13)0.430 (3)0.1547 (8)0.039 (4)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0316 (5)0.0355 (6)0.0317 (5)0.0039 (4)0.0033 (4)0.0017 (4)
C20.0300 (6)0.0359 (7)0.0325 (6)0.0004 (5)0.0046 (5)0.0016 (5)
O20.0339 (5)0.0557 (6)0.0534 (6)0.0004 (4)0.0129 (4)0.0100 (5)
N30.0261 (5)0.0456 (7)0.0341 (6)0.0046 (4)0.0018 (4)0.0051 (5)
C40.0316 (6)0.0435 (8)0.0291 (6)0.0011 (5)0.0027 (5)0.0019 (5)
O40.0372 (5)0.0688 (7)0.0443 (6)0.0050 (4)0.0033 (4)0.0213 (5)
C50.0279 (6)0.0453 (8)0.0305 (6)0.0024 (5)0.0045 (5)0.0017 (5)
C60.0279 (6)0.0408 (7)0.0330 (6)0.0059 (5)0.0024 (5)0.0020 (5)
C110.0412 (7)0.0340 (7)0.0367 (7)0.0031 (6)0.0041 (6)0.0051 (5)
C120.0444 (8)0.0461 (8)0.0342 (7)0.0010 (6)0.0052 (6)0.0030 (6)
C130.0531 (9)0.0515 (9)0.0362 (7)0.0002 (7)0.0071 (6)0.0060 (6)
N130.0664 (9)0.0809 (11)0.0661 (10)0.0210 (8)0.0135 (7)0.0097 (8)
C510.0337 (7)0.0759 (13)0.0463 (9)0.0046 (7)0.0127 (6)0.0107 (8)
Geometric parameters (Å, º) top
N1—C61.3820 (16)C2—N31.3709 (16)
N1—C21.3841 (15)N3—C41.3791 (16)
N1—C111.4652 (15)N3—H30.903 (16)
C11—C121.5279 (18)C4—O41.2306 (15)
C11—H11A0.958 (15)C4—C51.4462 (17)
C11—H11B0.972 (15)C5—C61.3365 (18)
C12—C131.459 (2)C5—C511.4958 (18)
C12—H12A1.030 (15)C51—H51A1.02 (2)
C12—H12B0.951 (17)C51—H51B0.988 (18)
C13—N131.1378 (19)C51—H51C0.945 (17)
C2—O21.2148 (14)C6—H60.933 (14)
C6—N1—C2121.12 (10)C2—N3—C4127.13 (10)
C6—N1—C11120.60 (10)C2—N3—H3117.0 (9)
C2—N1—C11118.28 (10)C4—N3—H3115.8 (9)
N1—C11—C12112.95 (11)O4—C4—N3120.39 (11)
N1—C11—H11A103.8 (9)O4—C4—C5124.07 (11)
C12—C11—H11A110.8 (8)N3—C4—C5115.54 (11)
N1—C11—H11B108.2 (8)C6—C5—C4118.01 (11)
C12—C11—H11B106.9 (8)C6—C5—C51123.33 (12)
H11A—C11—H11B114.2 (13)C4—C5—C51118.65 (12)
C13—C12—C11112.01 (12)C5—C51—H51A114.6 (11)
C13—C12—H12A107.8 (8)C5—C51—H51B110.3 (10)
C11—C12—H12A111.2 (8)H51A—C51—H51B103.6 (16)
C13—C12—H12B109.5 (10)C5—C51—H51C112.9 (10)
C11—C12—H12B113.8 (9)H51A—C51—H51C111.2 (16)
H12A—C12—H12B102.0 (12)H51B—C51—H51C103.1 (14)
N13—C13—C12178.12 (15)C5—C6—N1123.60 (11)
O2—C2—N3122.92 (11)C5—C6—H6122.4 (8)
O2—C2—N1122.51 (12)N1—C6—H6113.9 (8)
N3—C2—N1114.56 (10)
C6—N1—C11—C1292.05 (14)C2—N3—C4—C50.37 (19)
C2—N1—C11—C1287.42 (14)O4—C4—C5—C6178.10 (12)
N1—C11—C12—C1363.62 (15)N3—C4—C5—C61.20 (18)
C6—N1—C2—O2178.61 (11)O4—C4—C5—C512.6 (2)
C11—N1—C2—O21.93 (18)N3—C4—C5—C51178.13 (13)
C6—N1—C2—N32.00 (17)C4—C5—C6—N10.44 (19)
C11—N1—C2—N3177.47 (10)C51—C5—C6—N1178.86 (13)
O2—C2—N3—C4179.40 (12)C2—N1—C6—C51.27 (19)
N1—C2—N3—C41.21 (18)C11—N1—C6—C5178.19 (12)
C2—N3—C4—O4178.96 (11)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N3—H3···O4i0.903 (16)1.929 (17)2.8301 (14)174.8 (14)
C11—H11B···O2ii0.972 (15)2.513 (14)3.2386 (17)131.4 (10)
C12—H12B···O2iii0.951 (17)2.530 (18)3.4645 (18)167.6 (13)
C6—H6···N13iv0.933 (14)2.649 (15)3.5468 (19)161.7 (11)
Symmetry codes: (i) x+1, y+2, z; (ii) x+1, y1/2, z+1/2; (iii) x+1, y+1/2, z+1/2; (iv) x+2, y1/2, z+1/2.
(II) 4-(5-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)butanenitrile top
Crystal data top
C9H11N3O2Z = 2
Mr = 193.21F(000) = 204
Triclinic, P1Dx = 1.345 Mg m3
a = 4.8591 (8) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.8205 (12) ÅCell parameters from 2362 reflections
c = 10.5979 (11) Åθ = 2.6–29.7°
α = 75.815 (10)°µ = 0.10 mm1
β = 78.364 (12)°T = 293 K
γ = 80.780 (11)°Plate, colourless
V = 476.94 (11) Å30.6 × 0.3 × 0.1 mm
Data collection top
Kuma KM4 CCD area-detector
diffractometer
2368 independent reflections
Radiation source: fine-focus sealed tube1842 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.011
ω scansθmax = 29.7°, θmin = 2.6°
Absorption correction: multi-scan
CrysAlis RED (Oxford Diffraction 2006)
h = 64
Tmin = 0.969, Tmax = 1.000k = 1313
4787 measured reflectionsl = 1414
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121All H-atom parameters refined
S = 1.07 w = 1/[σ2(Fo2) + (0.0762P)2 + 0.0211P]
where P = (Fo2 + 2Fc2)/3
2368 reflections(Δ/σ)max < 0.001
171 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = 0.24 e Å3
Crystal data top
C9H11N3O2γ = 80.780 (11)°
Mr = 193.21V = 476.94 (11) Å3
Triclinic, P1Z = 2
a = 4.8591 (8) ÅMo Kα radiation
b = 9.8205 (12) ŵ = 0.10 mm1
c = 10.5979 (11) ÅT = 293 K
α = 75.815 (10)°0.6 × 0.3 × 0.1 mm
β = 78.364 (12)°
Data collection top
Kuma KM4 CCD area-detector
diffractometer
2368 independent reflections
Absorption correction: multi-scan
CrysAlis RED (Oxford Diffraction 2006)
1842 reflections with I > 2σ(I)
Tmin = 0.969, Tmax = 1.000Rint = 0.011
4787 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0390 restraints
wR(F2) = 0.121All H-atom parameters refined
S = 1.07Δρmax = 0.22 e Å3
2368 reflectionsΔρmin = 0.24 e Å3
171 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.50209 (17)0.33709 (9)0.79194 (8)0.0372 (2)
C20.2855 (2)0.43986 (11)0.75638 (10)0.0361 (2)
O20.16684 (18)0.52289 (9)0.82454 (8)0.0500 (2)
N30.20966 (17)0.44027 (9)0.63776 (8)0.0364 (2)
H30.068 (3)0.5047 (16)0.6142 (14)0.051 (3)*
C40.3384 (2)0.35642 (11)0.55030 (10)0.0342 (2)
O40.25319 (16)0.37071 (9)0.44499 (8)0.0464 (2)
C50.5724 (2)0.25585 (10)0.59085 (10)0.0370 (2)
C60.6387 (2)0.25031 (11)0.70908 (10)0.0378 (2)
H60.786 (3)0.1834 (15)0.7423 (15)0.056 (4)*
C110.5778 (2)0.31798 (13)0.92343 (11)0.0413 (3)
H11B0.754 (3)0.2562 (15)0.9210 (14)0.053 (4)*
H11A0.620 (3)0.4062 (16)0.9349 (14)0.054 (4)*
C120.3514 (2)0.25179 (14)1.03188 (11)0.0458 (3)
H12B0.174 (3)0.3214 (17)1.0369 (16)0.070 (4)*
H12A0.311 (3)0.1647 (15)1.0101 (14)0.050 (3)*
C130.4400 (3)0.21409 (16)1.16776 (12)0.0543 (3)
H13B0.274 (4)0.1850 (18)1.237 (2)0.086 (5)*
H13A0.497 (4)0.296 (2)1.1906 (17)0.080 (5)*
C140.6690 (3)0.09841 (14)1.17855 (12)0.0532 (3)
N140.8451 (3)0.00833 (16)1.18472 (16)0.0857 (5)
C510.7281 (3)0.16313 (16)0.50001 (15)0.0551 (3)
H51C0.809 (4)0.225 (2)0.412 (2)0.095 (6)*
H51B0.614 (4)0.100 (2)0.485 (2)0.095 (6)*
H51A0.876 (4)0.106 (2)0.536 (2)0.099 (6)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0355 (4)0.0418 (5)0.0327 (4)0.0032 (3)0.0084 (3)0.0077 (3)
C20.0341 (5)0.0386 (5)0.0334 (5)0.0011 (4)0.0051 (4)0.0077 (4)
O20.0535 (5)0.0530 (5)0.0428 (4)0.0127 (4)0.0094 (4)0.0202 (4)
N30.0323 (4)0.0397 (5)0.0354 (4)0.0056 (3)0.0086 (3)0.0091 (4)
C40.0316 (5)0.0366 (5)0.0339 (5)0.0027 (4)0.0048 (4)0.0084 (4)
O40.0434 (4)0.0575 (5)0.0407 (4)0.0060 (3)0.0143 (3)0.0173 (3)
C50.0362 (5)0.0334 (5)0.0409 (5)0.0011 (4)0.0059 (4)0.0109 (4)
C60.0346 (5)0.0354 (5)0.0404 (5)0.0043 (4)0.0081 (4)0.0068 (4)
C110.0396 (5)0.0491 (6)0.0366 (5)0.0002 (5)0.0137 (4)0.0096 (4)
C120.0417 (6)0.0579 (7)0.0354 (5)0.0019 (5)0.0102 (4)0.0080 (5)
C130.0618 (8)0.0637 (8)0.0346 (6)0.0053 (6)0.0124 (5)0.0104 (5)
C140.0564 (7)0.0564 (7)0.0427 (6)0.0067 (6)0.0151 (5)0.0025 (5)
N140.0721 (8)0.0768 (9)0.0889 (10)0.0134 (7)0.0226 (7)0.0109 (8)
C510.0574 (7)0.0521 (7)0.0595 (8)0.0139 (6)0.0144 (6)0.0286 (6)
Geometric parameters (Å, º) top
N1—C61.3743 (14)C2—O21.2203 (13)
N1—C21.3788 (13)C2—N31.3786 (12)
N1—C111.4728 (13)N3—C41.3797 (13)
C11—C121.5191 (17)N3—H30.888 (15)
C11—H11B0.966 (15)C4—O41.2362 (12)
C11—H11A0.962 (16)C4—C51.4427 (13)
C12—C131.5277 (15)C5—C61.3420 (14)
C12—H12B1.010 (16)C5—C511.4977 (16)
C12—H12A0.996 (14)C51—H51C1.02 (2)
C13—C141.4578 (19)C51—H51B0.96 (2)
C13—H13B1.00 (2)C51—H51A0.92 (2)
C13—H13A0.988 (18)C6—H60.953 (14)
C14—N141.1272 (18)
C6—N1—C2121.12 (8)O2—C2—N3122.29 (9)
C6—N1—C11120.22 (8)O2—C2—N1123.18 (9)
C2—N1—C11118.61 (9)N3—C2—N1114.53 (9)
N1—C11—C12111.35 (9)C2—N3—C4126.95 (8)
N1—C11—H11B104.9 (8)C2—N3—H3115.6 (9)
C12—C11—H11B110.8 (9)C4—N3—H3117.3 (9)
N1—C11—H11A110.0 (9)O4—C4—N3120.22 (9)
C12—C11—H11A113.2 (9)O4—C4—C5124.29 (9)
H11B—C11—H11A106.1 (11)N3—C4—C5115.49 (8)
C11—C12—C13112.52 (10)C6—C5—C4117.84 (9)
C11—C12—H12B109.2 (9)C6—C5—C51123.33 (10)
C13—C12—H12B107.2 (9)C4—C5—C51118.83 (10)
C11—C12—H12A108.5 (8)C5—C51—H51C109.4 (11)
C13—C12—H12A109.4 (8)C5—C51—H51B113.8 (13)
H12B—C12—H12A110.0 (12)H51C—C51—H51B109.3 (17)
C14—C13—C12112.22 (11)C5—C51—H51A110.1 (13)
C14—C13—H13B108.2 (10)H51C—C51—H51A108.7 (17)
C12—C13—H13B109.6 (10)H51B—C51—H51A105.5 (17)
C14—C13—H13A108.9 (11)C5—C6—N1123.91 (9)
C12—C13—H13A112.3 (10)C5—C6—H6121.4 (9)
H13B—C13—H13A105.3 (15)N1—C6—H6114.7 (9)
N14—C14—C13178.63 (15)
C6—N1—C11—C12106.37 (12)C2—N3—C4—O4177.87 (9)
C2—N1—C11—C1271.29 (13)C2—N3—C4—C51.72 (15)
N1—C11—C12—C13173.01 (10)O4—C4—C5—C6178.88 (10)
C11—C12—C13—C1468.41 (16)N3—C4—C5—C61.55 (14)
C6—N1—C2—O2176.83 (10)O4—C4—C5—C510.99 (17)
C11—N1—C2—O25.53 (16)N3—C4—C5—C51178.57 (11)
C6—N1—C2—N34.14 (15)C4—C5—C6—N11.78 (17)
C11—N1—C2—N3173.50 (9)C51—C5—C6—N1178.35 (11)
O2—C2—N3—C4176.44 (10)C2—N1—C6—C51.24 (17)
N1—C2—N3—C44.51 (15)C11—N1—C6—C5176.36 (10)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N3—H3···O4i0.888 (15)1.932 (16)2.8165 (12)173.6 (13)
C6—H6···N14ii0.953 (14)2.472 (15)3.4211 (16)173.6 (11)
C13—H13A···O2iii0.988 (18)2.557 (18)3.4751 (19)154.5 (14)
C12—H12B···O2iv1.010 (16)2.560 (17)3.4454 (15)146.3 (12)
Symmetry codes: (i) x, y+1, z+1; (ii) x+2, y, z+2; (iii) x+1, y+1, z+2; (iv) x, y+1, z+2.

Experimental details

(I)(II)
Crystal data
Chemical formulaC8H9N3O2C9H11N3O2
Mr179.18193.21
Crystal system, space groupMonoclinic, P21/cTriclinic, P1
Temperature (K)293293
a, b, c (Å)11.2597 (4), 4.4118 (2), 17.6256 (6)4.8591 (8), 9.8205 (12), 10.5979 (11)
α, β, γ (°)90, 98.253 (3), 9075.815 (10), 78.364 (12), 80.780 (11)
V3)866.49 (6)476.94 (11)
Z42
Radiation typeMo KαMo Kα
µ (mm1)0.100.10
Crystal size (mm)0.45 × 0.2 × 0.20.6 × 0.3 × 0.1
Data collection
DiffractometerKuma KM4 CCD area-detector
diffractometer
Kuma KM4 CCD area-detector
diffractometer
Absorption correctionMulti-scan
CrysAlis RED (Oxford Diffraction 2006)
Multi-scan
CrysAlis RED (Oxford Diffraction 2006)
Tmin, Tmax0.837, 0.9800.969, 1.000
No. of measured, independent and
observed [I > 2σ(I)] reflections
8802, 2187, 1423 4787, 2368, 1842
Rint0.0180.011
(sin θ/λ)max1)0.6950.697
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.037, 0.117, 1.04 0.039, 0.121, 1.07
No. of reflections21872368
No. of parameters154171
H-atom treatmentAll H-atom parameters refinedAll H-atom parameters refined
Δρmax, Δρmin (e Å3)0.19, 0.200.22, 0.24

Computer programs: CrysAlis CCD (Oxford Diffraction, 2006), CrysAlis RED (Oxford Diffraction, 2006), CrysAlis RED, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), Stereochemical Workstation Operation Manual (Siemens, 1989) and Mercury (Macrae et al., 2006), Please provide missing details.

Hydrogen-bond geometry (Å, º) for (I) top
D—H···AD—HH···AD···AD—H···A
N3—H3···O4i0.903 (16)1.929 (17)2.8301 (14)174.8 (14)
C11—H11B···O2ii0.972 (15)2.513 (14)3.2386 (17)131.4 (10)
C12—H12B···O2iii0.951 (17)2.530 (18)3.4645 (18)167.6 (13)
C6—H6···N13iv0.933 (14)2.649 (15)3.5468 (19)161.7 (11)
Symmetry codes: (i) x+1, y+2, z; (ii) x+1, y1/2, z+1/2; (iii) x+1, y+1/2, z+1/2; (iv) x+2, y1/2, z+1/2.
Hydrogen-bond geometry (Å, º) for (II) top
D—H···AD—HH···AD···AD—H···A
N3—H3···O4i0.888 (15)1.932 (16)2.8165 (12)173.6 (13)
C6—H6···N14ii0.953 (14)2.472 (15)3.4211 (16)173.6 (11)
C13—H13A···O2iii0.988 (18)2.557 (18)3.4751 (19)154.5 (14)
C12—H12B···O2iv1.010 (16)2.560 (17)3.4454 (15)146.3 (12)
Symmetry codes: (i) x, y+1, z+1; (ii) x+2, y, z+2; (iii) x+1, y+1, z+2; (iv) x, y+1, z+2.
 

Subscribe to Acta Crystallographica Section C: Structural Chemistry

The full text of this article is available to subscribers to the journal.

If you have already registered and are using a computer listed in your registration details, please email support@iucr.org for assistance.

Buy online

You may purchase this article in PDF and/or HTML formats. For purchasers in the European Community who do not have a VAT number, VAT will be added at the local rate. Payments to the IUCr are handled by WorldPay, who will accept payment by credit card in several currencies. To purchase the article, please complete the form below (fields marked * are required), and then click on `Continue'.
E-mail address* 
Repeat e-mail address* 
(for error checking) 

Format*   PDF (US $40)
   HTML (US $40)
   PDF+HTML (US $50)
In order for VAT to be shown for your country javascript needs to be enabled.

VAT number 
(non-UK EC countries only) 
Country* 
 

Terms and conditions of use
Contact us

Follow Acta Cryst. C
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds