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The crystal structure of the title Schiff base {systematic name: 2,2′-[methylenedi-
p-phenylenebis(nitrilomethylidyne)]diphenol}, C
27H
22N
2O
2, consists of intramolecularly hydrogen-bonded molecules interlinked by C—H
O hydrogen bonds [C
O = 3.426 (2) Å and C—H
O = 152.7 (17)°]. The molecule is in the enol form and is located on a twofold axis. The central methane C atom of the diphenylmethane motif is displaced from the aromatic ring planes. This effect is compared with previous results, which display an inverse correlation between the out-of-plane displacement and the C—C—C angle around the central methane C atom. In the title compound, the displacement is 0.124 (2) Å and the C—C—C angle is 110.18 (19)°.
Supporting information
CCDC reference: 603198
A sample of (I), synthesized by Franceschi & Floriani (2000), was kindly provided by Dr F. Franceschi of the Department of Chemistry of the École Polytechnique Fédérale de Lausanne, Switzerland. A plate-shaped yellow crystal with well developed faces was selected and mounted on a glass needle. The structure of (I) was determined using synchrotron radiation data collected at the Swiss–Norwegian Beam Line at the European Synchrotron Radiation Facility (ESRF), Grenoble, France.
All H atoms were clearly visible in the difference electron-density map. They were initially included in the riding model. Subsequent refinement including the H-atom positions led to significant reduction in residuals. Thus, the positions of all H atoms were refined freely in the final model. The atomic displacement parameters of the H atoms were constrained according to Uiso(H) = 1.2Ueq(C) or 1.5Ueq(O).
Data collection: MAR345 Software (Marresearch, 2005); cell refinement: CrysAlis RED (Oxford Diffraction, 2000); data reduction: CrysAlis RED and XPREP (Siemens, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: XP (Siemens, 1996); software used to prepare material for publication: Please provide missing details.
2,2'-[methylenedi-
p-phenylenebis(nitrilomethylidyne)]diphenol
top
Crystal data top
C27H22N2O2 | Z = 4 |
Mr = 406.47 | F(000) = 856 |
Monoclinic, C2/c | Dx = 1.319 Mg m−3 |
Hall symbol: -C 2yc | Synchrotron radiation, λ = 0.80000 Å |
a = 36.496 (7) Å | µ = 0.08 mm−1 |
b = 4.6030 (9) Å | T = 293 K |
c = 12.231 (2) Å | Platelet, yellow |
β = 95.06 (3)° | 0.40 × 0.15 × 0.05 mm |
V = 2046.7 (7) Å3 | |
Data collection top
MAR345 diffractometer | 1820 reflections with I > 2σ(I) |
Radiation source: bending magnet 1 at ESRF | Rint = 0.022 |
Si(111) double crystal monochromator with bent second crystal for
sagittal focusing | θmax = 29.9°, θmin = 4.3° |
Detector resolution: 6.667 pixels mm-1 | h = −44→45 |
ϕ scans | k = −5→5 |
5072 measured reflections | l = −15→15 |
1954 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.168 | Only H-atom coordinates refined |
S = 1.12 | w = 1/[σ2(Fo2) + (0.09P)2 + 1.25P] where P = (Fo2 + 2Fc2)/3 |
1954 reflections | (Δ/σ)max < 0.001 |
174 parameters | Δρmax = 0.14 e Å−3 |
0 restraints | Δρmin = −0.13 e Å−3 |
Crystal data top
C27H22N2O2 | V = 2046.7 (7) Å3 |
Mr = 406.47 | Z = 4 |
Monoclinic, C2/c | Synchrotron radiation, λ = 0.80000 Å |
a = 36.496 (7) Å | µ = 0.08 mm−1 |
b = 4.6030 (9) Å | T = 293 K |
c = 12.231 (2) Å | 0.40 × 0.15 × 0.05 mm |
β = 95.06 (3)° | |
Data collection top
MAR345 diffractometer | 1820 reflections with I > 2σ(I) |
5072 measured reflections | Rint = 0.022 |
1954 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.056 | 0 restraints |
wR(F2) = 0.168 | Only H-atom coordinates refined |
S = 1.12 | Δρmax = 0.14 e Å−3 |
1954 reflections | Δρmin = −0.13 e Å−3 |
174 parameters | |
Special details top
Experimental. Diffraction data were collected in single-bunch mode using a MAR345 area detector and focusing optics. The latter consisted of a vertically collimating Rh-coated Si mirror followed by a Si(111) double crystal monochromator, where the second crystal is sagittally bent for horizontal focusing, and a second vertically focusing Rh-coated mirror. A total of 90 images were measured with 2° oscillations. Prior to data collection, it was verified on a test image that none of the symmetry elements of the crystal was parallel to the oscillation axis, thereby ensuring as complete a data set as possible (94.4% completeness). The degree of linear polarization was assumed to be 0.95 (Birkedal, 2000). The integrated intensities were scaled to correct for variations in the incident beam intensity and for orientation-dependent absorption of the sample mount. Birkedal, H. (2000). PhD thesis, University of Lausanne, Switzerland. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.36000 (5) | −0.0015 (4) | 1.03239 (11) | 0.0643 (5) | |
H1 | 0.3750 (8) | 0.135 (7) | 0.988 (3) | 0.096* | |
N1 | 0.38758 (4) | 0.2842 (3) | 0.87619 (12) | 0.0385 (4) | |
C1 | 0.36495 (5) | 0.1510 (4) | 0.80768 (14) | 0.0372 (4) | |
H1A | 0.3650 (6) | 0.180 (5) | 0.7287 (17) | 0.045* | |
C2 | 0.33803 (5) | −0.0529 (4) | 0.84262 (14) | 0.0364 (4) | |
C3 | 0.33650 (5) | −0.1219 (4) | 0.95443 (16) | 0.0447 (5) | |
C4 | 0.31002 (7) | −0.3174 (5) | 0.9847 (2) | 0.0601 (6) | |
H4 | 0.3103 (7) | −0.358 (6) | 1.063 (2) | 0.072* | |
C5 | 0.28598 (6) | −0.4440 (5) | 0.9057 (2) | 0.0597 (6) | |
H5 | 0.2688 (7) | −0.581 (6) | 0.927 (2) | 0.072* | |
C6 | 0.28759 (6) | −0.3830 (5) | 0.7952 (2) | 0.0537 (6) | |
H6 | 0.2706 (7) | −0.467 (5) | 0.740 (2) | 0.064* | |
C7 | 0.31352 (5) | −0.1893 (4) | 0.76485 (18) | 0.0465 (5) | |
H7 | 0.3147 (6) | −0.139 (5) | 0.6886 (19) | 0.056* | |
C8 | 0.41373 (5) | 0.4826 (4) | 0.84031 (14) | 0.0355 (4) | |
C9 | 0.44218 (6) | 0.5668 (4) | 0.91650 (16) | 0.0442 (5) | |
H9 | 0.4426 (6) | 0.496 (5) | 0.9895 (19) | 0.053* | |
C10 | 0.46934 (6) | 0.7534 (4) | 0.88853 (17) | 0.0465 (5) | |
H10 | 0.4891 (7) | 0.804 (5) | 0.939 (2) | 0.056* | |
C11 | 0.46882 (5) | 0.8690 (4) | 0.78316 (15) | 0.0383 (4) | |
C12 | 0.43968 (5) | 0.7934 (4) | 0.70847 (16) | 0.0432 (5) | |
H12 | 0.4371 (6) | 0.878 (5) | 0.6330 (18) | 0.052* | |
C13 | 0.41257 (5) | 0.6015 (4) | 0.73512 (15) | 0.0419 (5) | |
H13 | 0.3913 (6) | 0.554 (5) | 0.6829 (18) | 0.050* | |
C14 | 0.5000 | 1.0572 (6) | 0.7500 | 0.0459 (7) | |
H14 | 0.4925 (6) | 1.191 (5) | 0.6891 (19) | 0.055* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0777 (11) | 0.0796 (12) | 0.0353 (7) | −0.0241 (9) | 0.0028 (7) | 0.0018 (7) |
N1 | 0.0397 (8) | 0.0371 (8) | 0.0394 (8) | −0.0008 (6) | 0.0073 (7) | −0.0002 (6) |
C1 | 0.0401 (10) | 0.0375 (9) | 0.0346 (9) | 0.0005 (7) | 0.0059 (8) | −0.0002 (7) |
C2 | 0.0358 (9) | 0.0343 (9) | 0.0394 (9) | 0.0029 (7) | 0.0058 (7) | 0.0008 (7) |
C3 | 0.0478 (11) | 0.0452 (10) | 0.0421 (10) | −0.0006 (8) | 0.0089 (9) | 0.0007 (8) |
C4 | 0.0685 (15) | 0.0605 (13) | 0.0542 (13) | −0.0081 (11) | 0.0216 (12) | 0.0097 (10) |
C5 | 0.0500 (12) | 0.0500 (12) | 0.0818 (16) | −0.0093 (10) | 0.0211 (12) | 0.0024 (11) |
C6 | 0.0394 (10) | 0.0484 (11) | 0.0722 (14) | −0.0048 (8) | −0.0012 (10) | −0.0033 (10) |
C7 | 0.0450 (10) | 0.0421 (10) | 0.0516 (11) | −0.0009 (8) | 0.0003 (9) | 0.0022 (8) |
C8 | 0.0370 (9) | 0.0323 (8) | 0.0378 (9) | 0.0014 (6) | 0.0063 (7) | −0.0009 (7) |
C9 | 0.0495 (11) | 0.0452 (10) | 0.0376 (9) | −0.0064 (8) | 0.0023 (8) | 0.0002 (8) |
C10 | 0.0472 (11) | 0.0451 (11) | 0.0465 (10) | −0.0080 (8) | −0.0005 (9) | −0.0038 (8) |
C11 | 0.0372 (9) | 0.0266 (8) | 0.0522 (10) | 0.0045 (6) | 0.0111 (8) | −0.0037 (7) |
C12 | 0.0445 (10) | 0.0432 (10) | 0.0426 (10) | 0.0035 (8) | 0.0083 (8) | 0.0069 (8) |
C13 | 0.0391 (10) | 0.0463 (10) | 0.0400 (10) | −0.0025 (8) | 0.0018 (8) | 0.0030 (8) |
C14 | 0.0458 (15) | 0.0280 (12) | 0.0655 (17) | 0.000 | 0.0139 (14) | 0.000 |
Geometric parameters (Å, º) top
O1—C3 | 1.344 (3) | C7—H7 | 0.97 (2) |
O1—H1 | 1.02 (3) | C8—C9 | 1.388 (3) |
N1—C1 | 1.280 (2) | C8—C13 | 1.395 (2) |
N1—C8 | 1.418 (2) | C9—C10 | 1.377 (3) |
C1—C2 | 1.450 (2) | C9—H9 | 0.95 (2) |
C1—H1A | 0.97 (2) | C10—C11 | 1.393 (3) |
C2—C7 | 1.396 (3) | C10—H10 | 0.94 (2) |
C2—C3 | 1.410 (3) | C11—C12 | 1.384 (3) |
C3—C4 | 1.395 (3) | C11—C14i | 1.514 (2) |
C4—C5 | 1.376 (4) | C11—C14 | 1.514 (2) |
C4—H4 | 0.97 (3) | C12—C13 | 1.386 (3) |
C5—C6 | 1.386 (4) | C12—H12 | 1.00 (2) |
C5—H5 | 0.94 (3) | C13—H13 | 0.99 (2) |
C6—C7 | 1.375 (3) | C14—H14 | 0.99 (2) |
C6—H6 | 0.95 (3) | | |
| | | |
C3—O1—H1 | 102.4 (18) | C9—C8—N1 | 117.13 (16) |
C1—N1—C8 | 121.26 (15) | C13—C8—N1 | 124.84 (17) |
N1—C1—C2 | 122.14 (16) | C10—C9—C8 | 121.29 (18) |
N1—C1—H1A | 121.7 (13) | C10—C9—H9 | 119.8 (14) |
C2—C1—H1A | 116.1 (13) | C8—C9—H9 | 118.9 (14) |
C7—C2—C3 | 118.80 (17) | C9—C10—C11 | 121.1 (2) |
C7—C2—C1 | 120.03 (17) | C9—C10—H10 | 121.4 (14) |
C3—C2—C1 | 121.16 (17) | C11—C10—H10 | 117.4 (14) |
O1—C3—C4 | 119.41 (19) | C12—C11—C10 | 117.49 (17) |
O1—C3—C2 | 121.19 (17) | C12—C11—C14i | 121.27 (15) |
C4—C3—C2 | 119.4 (2) | C10—C11—C14i | 121.16 (16) |
C5—C4—C3 | 120.0 (2) | C12—C11—C14 | 121.27 (15) |
C5—C4—H4 | 124.0 (16) | C10—C11—C14 | 121.16 (16) |
C3—C4—H4 | 115.9 (16) | C11—C12—C13 | 121.85 (18) |
C4—C5—C6 | 121.3 (2) | C11—C12—H12 | 121.2 (13) |
C4—C5—H5 | 119.2 (15) | C13—C12—H12 | 117.0 (13) |
C6—C5—H5 | 119.4 (15) | C12—C13—C8 | 120.16 (19) |
C7—C6—C5 | 118.9 (2) | C12—C13—H13 | 121.8 (12) |
C7—C6—H6 | 119.4 (15) | C8—C13—H13 | 118.0 (13) |
C5—C6—H6 | 121.6 (15) | C11—C14—C11i | 110.17 (19) |
C6—C7—C2 | 121.5 (2) | C11—C14—H14 | 113.1 (13) |
C6—C7—H7 | 120.6 (14) | C11i—C14—H14 | 108.7 (13) |
C2—C7—H7 | 117.9 (14) | H14—C14—H14i | 103 (3) |
C9—C8—C13 | 118.02 (17) | | |
| | | |
C9—C8—N1—C1 | −165.97 (17) | O1—C3—C2—C1 | −0.2 (3) |
C1—N1—C8—C9 | −165.97 (17) | C10—C11—C14—C11i | 82.96 (16) |
C2—C1—N1—C8 | 179.92 (15) | | |
Symmetry code: (i) −x+1, y, −z+3/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 1.02 (3) | 1.63 (3) | 2.595 (2) | 155 (3) |
C1—H1A···O1ii | 0.97 (2) | 2.53 (2) | 3.426 (2) | 152.7 (17) |
Symmetry code: (ii) x, −y, z−1/2. |
Experimental details
Crystal data |
Chemical formula | C27H22N2O2 |
Mr | 406.47 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 36.496 (7), 4.6030 (9), 12.231 (2) |
β (°) | 95.06 (3) |
V (Å3) | 2046.7 (7) |
Z | 4 |
Radiation type | Synchrotron, λ = 0.80000 Å |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.40 × 0.15 × 0.05 |
|
Data collection |
Diffractometer | MAR345 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5072, 1954, 1820 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.622 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.168, 1.12 |
No. of reflections | 1954 |
No. of parameters | 174 |
H-atom treatment | Only H-atom coordinates refined |
Δρmax, Δρmin (e Å−3) | 0.14, −0.13 |
Selected geometric parameters (Å, º) topO1—C3 | 1.344 (3) | N1—C8 | 1.418 (2) |
O1—H1 | 1.02 (3) | C1—C2 | 1.450 (2) |
N1—C1 | 1.280 (2) | C2—C3 | 1.410 (3) |
| | | |
C11—C14—C11i | 110.17 (19) | | |
| | | |
C9—C8—N1—C1 | −165.97 (17) | O1—C3—C2—C1 | −0.2 (3) |
C1—N1—C8—C9 | −165.97 (17) | C10—C11—C14—C11i | 82.96 (16) |
C2—C1—N1—C8 | 179.92 (15) | | |
Symmetry code: (i) −x+1, y, −z+3/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 1.02 (3) | 1.63 (3) | 2.595 (2) | 155 (3) |
C1—H1A···O1ii | 0.97 (2) | 2.53 (2) | 3.426 (2) | 152.7 (17) |
Symmetry code: (ii) x, −y, z−1/2. |
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Bis-bidentate Schiff base ligands have attracted significant interest as building blocks in metallosupramolecular chemistry, especially for the synthesis of helicates (see, for example, Kruger et al., 2001; Yoshida & Ichikawa, 1997; Yoshida et al., 2000; Franceschi et al., 2001; Albrecht, 2001). The title compound, (I), has been shown to form helicate supramolecular complexes with transition metals of the form [M2L2] (Yoshida & Ichikawa, 1997; Yoshida et al., 2000; Kruger et al., 2001). Free N-salicylideneanilines are often thermochromic (Ogawa et al., 1998; Filarowski et al., 2002; Popović, et al., 2002; Ogawa & Harada, 2003), due to a temperature-dependent equilibrium between the keto–amine form and the enol–imino form.
The location of the H atoms showed unequivocally that (I) occurs in the enol-imino form in the crystalline state, in agreement with previous IR results (Kruger et al., 2001; Pui et al., 2001). This is also the form found in CHCl3 solution (Yoshida et al., 2000; Kruger et al., 2001). The factors determining whether a given molecule will occur in the keto–amine or enol–imino form are manifold. It has been shown to depend on the substitution on the benzene rings (Filarowski et al., 2002; Popović et al., 2002) and intermolecular hydrogen bonding (Ogawa et al., 1998; Ogawa & Harada, 2003), and aggregation (packing) of the molecules plays an important role for the equilibrium in solution (Ogawa et al., 2001; Ogawa & Harada, 2003). It has been reported that (I) undergoes a colour change from yellow to red at 373 K (Zhu et al., 2001), but it is unclear whether this colour change is related to the keto–enol tautomerism.
The molecules of (I) are V-shaped, with atom C14 coinciding with a crystallographic twofold axis. The angle between the two symmetry-related C8–C13 benzene rings is 78.87 (5)°. The C2–C7 phenol ring (ring 1) is not coplanar with the C8–C13 benzene ring (ring 2), the interplanar angle being 12.99 (7)° (Fig. 1b, Table 1). The imino plane is almost coplanar with ring 1 [interplanar angle 1.66 (11)°]. It is, however, twisted significantly out of the plane of ring 2: the C1—N1—C8—C9 torsion angle differs significantly from 180° (Table 1) and the interplanar angle is 14.86 (13)°. This lack of coplanarity is presumably caused by steric hindrance between the H atoms on atoms C1 and C13. Indeed, the H1A···H13 distance [2.07 (3) Å] is significantly shorter than the sum of the van der Waals radii (2.40 Å; Reference?).
Surprisingly, atom C14 is significantly out of the mean plane of ring 2 [0.124 (2) Å]. In order to determine whether this phenomenon is particular to the structure of (I) or reflects a general effect, we examined the Cambridge Structural Database (CSD, Version 5.27 of November 2005, 355064 entries; Allen, 2002). Fig. 3 shows the search fragment, bisphenylmethane, together with the relation between the average distance of the methane C atom (Cm) to the planes of the benzene rings and the methane C—Cm—C bond angle. Below a given onset angle, there is an inverse linear correlation between the angle and displacement of the Cm atom out of the aromatic plane. The data with R < 0.05 (38 structures, 44 angles) were fitted to the relation d = d0 + α(a-ac) for a < ac, and d = d0 otherwise. The fit, with R2 = 0.919, resulted in ac = 112.1 (4)°, d0 = 0.057 (6) Å and α = −0.048 (3) Å/degree. The value found in (I) (black diamond in Fig. 3) is in excellent agreement with the overall correlation. Structures of lesser quality, 0.05 < R < 0.10 (61 structures, 93 angles), show a larger spread than the lower R factor data set but the trends are similar. The displacement is towards the interior of the V shape formed by the two aromatic rings. This effect is likely to be related to π–π interactions between the two benzene rings. However, in (I) and several, but not all, of the CSD structures with significant out of plane displacements, the two benzene rings are not coplanar. This suggests that a more complicated mechanism may be responsible for the observed behaviour.
The V-shaped molecules pack into chevron-like columns that extend along (010) (Fig. 2) via van der Waals contacts. These columns are connected to their inverted neighbour stack along the c axis by C—H···O hydrogen bonds between the enol O atom and the H atom on atom C1.