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In cyclotridecanone 2,4-dinitrophenylhydrazone, C
19H
28N
4O
4, the 13-membered carbocycle exists in the triangular [337] conformation. The 2,4-dinitrophenylhydrazone group is almost perpendicular to the 13-membered ring, with a dihedral angle of 82.66 (2)° between the mean planes. The dinitrophenylhydrazone rings are packed parallel to each other and separated by 3.28 (1) Å. The NH group forms an intramolecular hydrogen bond to a nitro O atom, and there is a weaker C—H
O interaction between a cyclotridecane CH group and a symmetry-related 4-nitro O atom, with a C
O distance of 3.436 (2) Å and a 150° angle about the H atom. The structure, in combination with additional evidence, indicates that [337] is the preferred conformation of cyclotridecane and other simple 13-membered rings.
Supporting information
CCDC reference: 700034
Compound (I) was synthesized by treatment of cyclotridecanone (0.2 g) with
2,4-dinitrophenylhydrazine solution (3 ml) prepared from
2,4-dinitrophenylhydrazine (1 g), concentrated sulfuric acid (5 ml), water (8 ml) and ethanol (25 ml). The dinitrophenylhydrazone derivative immediately
precipitated from the solution and was isolated by filtration, washed with
water, and recrystallized from ethanol [m.p. 377–378 K; literature m.p.
386.7–387.7 K (Zakharkin et al., 1962)]. The yellow
blade-shaped
crystals were grown by slow evaporation from ethanol.
The H atoms on C were placed in calculated positions, guided by difference
maps, with C—H bond distances in the range 0.95–0.99Å and thereafter
treated as riding aroms using the SHELXL97 (Sheldrick, 2008) defaults.
The
N—H hydrogen coordinates were refined. All H displacement parameters were
assigned as 1.2Ueq(C or N).
Data collection: COLLECT (Nonius, 2000); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
cyclotridecanone 2,4-dinitrophenylhydrazone
top
Crystal data top
C19H28N4O4 | Z = 2 |
Mr = 376.45 | F(000) = 404 |
Triclinic, P1 | Dx = 1.318 Mg m−3 |
Hall symbol: -P 1 | Melting point: 378 K |
a = 7.7859 (10) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 7.8937 (10) Å | Cell parameters from 4832 reflections |
c = 16.130 (2) Å | θ = 2.5–31.5° |
α = 81.979 (7)° | µ = 0.09 mm−1 |
β = 77.608 (8)° | T = 90 K |
γ = 80.234 (8)° | Lath, yellow |
V = 948.7 (2) Å3 | 0.40 × 0.08 × 0.03 mm |
Data collection top
Nonius KappaCCD (with an Oxford Cryosystems Cryostream cooler) diffractometer | 3974 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.029 |
Graphite monochromator | θmax = 31.5°, θmin = 2.6° |
ω scans with κ offsets | h = −11→10 |
26226 measured reflections | k = −11→11 |
5518 independent reflections | l = −22→22 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.099 | w = 1/[σ2(Fo2) + (0.0276P)2 + 0.4695P] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max < 0.001 |
5518 reflections | Δρmax = 0.34 e Å−3 |
248 parameters | Δρmin = −0.26 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0121 (14) |
Crystal data top
C19H28N4O4 | γ = 80.234 (8)° |
Mr = 376.45 | V = 948.7 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.7859 (10) Å | Mo Kα radiation |
b = 7.8937 (10) Å | µ = 0.09 mm−1 |
c = 16.130 (2) Å | T = 90 K |
α = 81.979 (7)° | 0.40 × 0.08 × 0.03 mm |
β = 77.608 (8)° | |
Data collection top
Nonius KappaCCD (with an Oxford Cryosystems Cryostream cooler) diffractometer | 3974 reflections with I > 2σ(I) |
26226 measured reflections | Rint = 0.029 |
5518 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.099 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | Δρmax = 0.34 e Å−3 |
5518 reflections | Δρmin = −0.26 e Å−3 |
248 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.64885 (12) | 0.62443 (12) | 0.46946 (6) | 0.0187 (2) | |
O2 | 0.78601 (13) | 0.72956 (13) | 0.34616 (6) | 0.0234 (2) | |
O3 | 1.04660 (13) | 1.23977 (14) | 0.30876 (6) | 0.0276 (2) | |
O4 | 1.02088 (12) | 1.38929 (12) | 0.41552 (7) | 0.0235 (2) | |
N1 | 0.49239 (13) | 0.85568 (13) | 0.68070 (6) | 0.0131 (2) | |
N2 | 0.56946 (13) | 0.80898 (14) | 0.59983 (7) | 0.0129 (2) | |
H2N | 0.5568 (19) | 0.710 (2) | 0.5812 (9) | 0.015* | |
N3 | 0.72727 (13) | 0.73853 (14) | 0.42281 (7) | 0.0156 (2) | |
N4 | 0.98689 (14) | 1.26911 (15) | 0.38335 (7) | 0.0185 (2) | |
C1 | 0.40503 (15) | 0.74620 (16) | 0.73223 (8) | 0.0131 (2) | |
C2 | 0.31678 (16) | 0.80125 (17) | 0.81914 (8) | 0.0158 (3) | |
H2A | 0.3297 | 0.6999 | 0.8622 | 0.019* | |
H2B | 0.1882 | 0.8359 | 0.8199 | 0.019* | |
C3 | 0.38806 (17) | 0.94988 (17) | 0.84634 (8) | 0.0176 (3) | |
H3A | 0.3096 | 0.9869 | 0.8996 | 0.021* | |
H3B | 0.3832 | 1.0492 | 0.8016 | 0.021* | |
C4 | 0.57951 (17) | 0.90273 (17) | 0.86136 (8) | 0.0170 (3) | |
H4A | 0.6534 | 0.8443 | 0.8126 | 0.020* | |
H4B | 0.6273 | 1.0106 | 0.8627 | 0.020* | |
C5 | 0.59681 (17) | 0.78539 (18) | 0.94393 (8) | 0.0187 (3) | |
H5A | 0.5380 | 0.6830 | 0.9453 | 0.022* | |
H5B | 0.5330 | 0.8486 | 0.9930 | 0.022* | |
C6 | 0.78921 (18) | 0.72372 (18) | 0.95468 (9) | 0.0208 (3) | |
H6A | 0.8562 | 0.8232 | 0.9395 | 0.025* | |
H6B | 0.7895 | 0.6821 | 1.0155 | 0.025* | |
C7 | 0.88498 (17) | 0.57902 (17) | 0.89995 (9) | 0.0179 (3) | |
H7A | 0.8649 | 0.6112 | 0.8409 | 0.021* | |
H7B | 1.0143 | 0.5675 | 0.8981 | 0.021* | |
C8 | 0.82196 (17) | 0.40480 (18) | 0.93381 (9) | 0.0192 (3) | |
H8A | 0.6906 | 0.4236 | 0.9497 | 0.023* | |
H8B | 0.8682 | 0.3603 | 0.9865 | 0.023* | |
C9 | 0.87789 (18) | 0.26630 (17) | 0.87187 (9) | 0.0210 (3) | |
H9A | 0.8326 | 0.1587 | 0.9004 | 0.025* | |
H9B | 1.0093 | 0.2414 | 0.8590 | 0.025* | |
C10 | 0.81163 (17) | 0.31571 (17) | 0.78743 (9) | 0.0187 (3) | |
H10A | 0.8892 | 0.3940 | 0.7497 | 0.022* | |
H10B | 0.8241 | 0.2097 | 0.7590 | 0.022* | |
C11 | 0.61887 (16) | 0.40397 (17) | 0.79641 (8) | 0.0163 (3) | |
H11A | 0.5409 | 0.3291 | 0.8363 | 0.020* | |
H11B | 0.6070 | 0.5143 | 0.8212 | 0.020* | |
C12 | 0.55749 (17) | 0.44035 (17) | 0.71128 (8) | 0.0166 (3) | |
H12A | 0.5384 | 0.3301 | 0.6945 | 0.020* | |
H12B | 0.6532 | 0.4857 | 0.6673 | 0.020* | |
C13 | 0.38514 (16) | 0.57043 (16) | 0.71237 (8) | 0.0149 (2) | |
H13A | 0.3508 | 0.5819 | 0.6560 | 0.018* | |
H13B | 0.2884 | 0.5249 | 0.7557 | 0.018* | |
C14 | 0.66839 (15) | 0.91866 (16) | 0.54556 (8) | 0.0125 (2) | |
C15 | 0.74814 (15) | 0.88944 (16) | 0.45985 (8) | 0.0129 (2) | |
C16 | 0.84952 (15) | 1.00571 (17) | 0.40640 (8) | 0.0145 (2) | |
H16 | 0.9020 | 0.9842 | 0.3493 | 0.017* | |
C17 | 0.87246 (15) | 1.15210 (16) | 0.43761 (8) | 0.0151 (3) | |
C18 | 0.79480 (16) | 1.18785 (16) | 0.52117 (8) | 0.0153 (3) | |
H18 | 0.8106 | 1.2906 | 0.5412 | 0.018* | |
C19 | 0.69566 (15) | 1.07289 (16) | 0.57367 (8) | 0.0143 (2) | |
H19 | 0.6437 | 1.0971 | 0.6305 | 0.017* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0193 (4) | 0.0185 (5) | 0.0183 (5) | −0.0048 (4) | −0.0008 (4) | −0.0036 (4) |
O2 | 0.0257 (5) | 0.0298 (6) | 0.0145 (5) | −0.0054 (4) | 0.0014 (4) | −0.0083 (4) |
O3 | 0.0274 (5) | 0.0335 (6) | 0.0175 (5) | −0.0068 (4) | 0.0027 (4) | 0.0047 (4) |
O4 | 0.0195 (5) | 0.0178 (5) | 0.0316 (6) | −0.0048 (4) | −0.0028 (4) | 0.0017 (4) |
N1 | 0.0120 (5) | 0.0151 (5) | 0.0115 (5) | 0.0003 (4) | −0.0016 (4) | −0.0025 (4) |
N2 | 0.0135 (5) | 0.0126 (5) | 0.0123 (5) | −0.0016 (4) | −0.0014 (4) | −0.0026 (4) |
N3 | 0.0129 (5) | 0.0187 (6) | 0.0149 (5) | 0.0003 (4) | −0.0027 (4) | −0.0039 (4) |
N4 | 0.0130 (5) | 0.0192 (6) | 0.0201 (6) | 0.0000 (4) | −0.0030 (4) | 0.0054 (5) |
C1 | 0.0105 (5) | 0.0144 (6) | 0.0143 (6) | −0.0006 (4) | −0.0036 (4) | −0.0014 (5) |
C2 | 0.0133 (5) | 0.0179 (6) | 0.0153 (6) | −0.0026 (5) | 0.0007 (5) | −0.0029 (5) |
C3 | 0.0206 (6) | 0.0150 (6) | 0.0159 (6) | −0.0013 (5) | −0.0003 (5) | −0.0043 (5) |
C4 | 0.0192 (6) | 0.0165 (6) | 0.0161 (6) | −0.0056 (5) | −0.0015 (5) | −0.0032 (5) |
C5 | 0.0227 (6) | 0.0197 (7) | 0.0138 (6) | −0.0042 (5) | −0.0015 (5) | −0.0037 (5) |
C6 | 0.0243 (7) | 0.0227 (7) | 0.0180 (7) | −0.0065 (5) | −0.0073 (5) | −0.0027 (5) |
C7 | 0.0165 (6) | 0.0204 (7) | 0.0177 (7) | −0.0060 (5) | −0.0039 (5) | −0.0003 (5) |
C8 | 0.0195 (6) | 0.0203 (7) | 0.0187 (7) | −0.0062 (5) | −0.0063 (5) | 0.0032 (5) |
C9 | 0.0198 (6) | 0.0165 (7) | 0.0271 (8) | −0.0015 (5) | −0.0089 (5) | 0.0019 (5) |
C10 | 0.0185 (6) | 0.0152 (6) | 0.0220 (7) | −0.0009 (5) | −0.0041 (5) | −0.0020 (5) |
C11 | 0.0176 (6) | 0.0137 (6) | 0.0177 (6) | −0.0022 (5) | −0.0044 (5) | −0.0009 (5) |
C12 | 0.0199 (6) | 0.0132 (6) | 0.0174 (6) | −0.0013 (5) | −0.0050 (5) | −0.0034 (5) |
C13 | 0.0154 (6) | 0.0153 (6) | 0.0149 (6) | −0.0036 (5) | −0.0039 (5) | −0.0018 (5) |
C14 | 0.0092 (5) | 0.0153 (6) | 0.0123 (6) | 0.0008 (4) | −0.0036 (4) | 0.0006 (5) |
C15 | 0.0111 (5) | 0.0139 (6) | 0.0135 (6) | 0.0010 (4) | −0.0041 (4) | −0.0020 (5) |
C16 | 0.0102 (5) | 0.0195 (6) | 0.0122 (6) | 0.0015 (5) | −0.0029 (4) | 0.0001 (5) |
C17 | 0.0114 (5) | 0.0156 (6) | 0.0162 (6) | −0.0014 (5) | −0.0024 (5) | 0.0044 (5) |
C18 | 0.0131 (5) | 0.0133 (6) | 0.0190 (6) | 0.0001 (4) | −0.0045 (5) | −0.0008 (5) |
C19 | 0.0126 (5) | 0.0147 (6) | 0.0145 (6) | 0.0004 (4) | −0.0018 (4) | −0.0023 (5) |
Geometric parameters (Å, º) top
O1—N3 | 1.2453 (14) | C7—H7A | 0.9900 |
O2—N3 | 1.2302 (14) | C7—H7B | 0.9900 |
O3—N4 | 1.2323 (15) | C8—C9 | 1.530 (2) |
O4—N4 | 1.2332 (15) | C8—H8A | 0.9900 |
N1—C1 | 1.2871 (16) | C8—H8B | 0.9900 |
N1—N2 | 1.3859 (14) | C9—C10 | 1.5357 (19) |
N2—C14 | 1.3545 (16) | C9—H9A | 0.9900 |
N2—H2N | 0.899 (15) | C9—H9B | 0.9900 |
N3—C15 | 1.4520 (16) | C10—C11 | 1.5294 (18) |
N4—C17 | 1.4600 (16) | C10—H10A | 0.9900 |
C1—C13 | 1.5067 (17) | C10—H10B | 0.9900 |
C1—C2 | 1.5104 (17) | C11—C12 | 1.5236 (18) |
C2—C3 | 1.5317 (18) | C11—H11A | 0.9900 |
C2—H2A | 0.9900 | C11—H11B | 0.9900 |
C2—H2B | 0.9900 | C12—C13 | 1.5436 (18) |
C3—C4 | 1.5365 (18) | C12—H12A | 0.9900 |
C3—H3A | 0.9900 | C12—H12B | 0.9900 |
C3—H3B | 0.9900 | C13—H13A | 0.9900 |
C4—C5 | 1.5298 (18) | C13—H13B | 0.9900 |
C4—H4A | 0.9900 | C14—C19 | 1.4198 (17) |
C4—H4B | 0.9900 | C14—C15 | 1.4221 (17) |
C5—C6 | 1.5335 (19) | C15—C16 | 1.3934 (17) |
C5—H5A | 0.9900 | C16—C17 | 1.3754 (18) |
C5—H5B | 0.9900 | C16—H16 | 0.9500 |
C6—C7 | 1.5329 (19) | C17—C18 | 1.4001 (18) |
C6—H6A | 0.9900 | C18—C19 | 1.3708 (17) |
C6—H6B | 0.9900 | C18—H18 | 0.9500 |
C7—C8 | 1.5279 (18) | C19—H19 | 0.9500 |
| | | |
C1—N1—N2 | 116.91 (10) | C7—C8—H8B | 108.5 |
C14—N2—N1 | 118.09 (10) | C9—C8—H8B | 108.5 |
C14—N2—H2N | 118.2 (9) | H8A—C8—H8B | 107.5 |
N1—N2—H2N | 123.7 (9) | C8—C9—C10 | 114.42 (11) |
O2—N3—O1 | 122.56 (11) | C8—C9—H9A | 108.7 |
O2—N3—C15 | 118.57 (11) | C10—C9—H9A | 108.7 |
O1—N3—C15 | 118.87 (10) | C8—C9—H9B | 108.7 |
O3—N4—O4 | 123.97 (11) | C10—C9—H9B | 108.7 |
O3—N4—C17 | 118.08 (11) | H9A—C9—H9B | 107.6 |
O4—N4—C17 | 117.93 (11) | C11—C10—C9 | 114.84 (11) |
N1—C1—C13 | 125.20 (11) | C11—C10—H10A | 108.6 |
N1—C1—C2 | 116.31 (11) | C9—C10—H10A | 108.6 |
C13—C1—C2 | 118.49 (10) | C11—C10—H10B | 108.6 |
C1—C2—C3 | 115.78 (10) | C9—C10—H10B | 108.6 |
C1—C2—H2A | 108.3 | H10A—C10—H10B | 107.5 |
C3—C2—H2A | 108.3 | C12—C11—C10 | 112.42 (11) |
C1—C2—H2B | 108.3 | C12—C11—H11A | 109.1 |
C3—C2—H2B | 108.3 | C10—C11—H11A | 109.1 |
H2A—C2—H2B | 107.4 | C12—C11—H11B | 109.1 |
C2—C3—C4 | 113.67 (11) | C10—C11—H11B | 109.1 |
C2—C3—H3A | 108.8 | H11A—C11—H11B | 107.9 |
C4—C3—H3A | 108.8 | C11—C12—C13 | 114.12 (11) |
C2—C3—H3B | 108.8 | C11—C12—H12A | 108.7 |
C4—C3—H3B | 108.8 | C13—C12—H12A | 108.7 |
H3A—C3—H3B | 107.7 | C11—C12—H12B | 108.7 |
C5—C4—C3 | 114.05 (11) | C13—C12—H12B | 108.7 |
C5—C4—H4A | 108.7 | H12A—C12—H12B | 107.6 |
C3—C4—H4A | 108.7 | C1—C13—C12 | 112.53 (10) |
C5—C4—H4B | 108.7 | C1—C13—H13A | 109.1 |
C3—C4—H4B | 108.7 | C12—C13—H13A | 109.1 |
H4A—C4—H4B | 107.6 | C1—C13—H13B | 109.1 |
C4—C5—C6 | 114.09 (11) | C12—C13—H13B | 109.1 |
C4—C5—H5A | 108.7 | H13A—C13—H13B | 107.8 |
C6—C5—H5A | 108.7 | N2—C14—C19 | 119.68 (11) |
C4—C5—H5B | 108.7 | N2—C14—C15 | 123.60 (11) |
C6—C5—H5B | 108.7 | C19—C14—C15 | 116.73 (11) |
H5A—C5—H5B | 107.6 | C16—C15—C14 | 121.58 (11) |
C7—C6—C5 | 113.69 (11) | C16—C15—N3 | 116.27 (11) |
C7—C6—H6A | 108.8 | C14—C15—N3 | 122.14 (11) |
C5—C6—H6A | 108.8 | C17—C16—C15 | 118.95 (12) |
C7—C6—H6B | 108.8 | C17—C16—H16 | 120.5 |
C5—C6—H6B | 108.8 | C15—C16—H16 | 120.5 |
H6A—C6—H6B | 107.7 | C16—C17—C18 | 121.64 (11) |
C8—C7—C6 | 112.77 (11) | C16—C17—N4 | 119.05 (11) |
C8—C7—H7A | 109.0 | C18—C17—N4 | 119.26 (11) |
C6—C7—H7A | 109.0 | C19—C18—C17 | 119.25 (12) |
C8—C7—H7B | 109.0 | C19—C18—H18 | 120.4 |
C6—C7—H7B | 109.0 | C17—C18—H18 | 120.4 |
H7A—C7—H7B | 107.8 | C18—C19—C14 | 121.84 (12) |
C7—C8—C9 | 115.28 (11) | C18—C19—H19 | 119.1 |
C7—C8—H8A | 108.5 | C14—C19—H19 | 119.1 |
C9—C8—H8A | 108.5 | | |
| | | |
C1—N1—N2—C14 | −177.27 (11) | C19—C14—C15—C16 | 0.62 (17) |
N2—N1—C1—C13 | 1.98 (17) | N2—C14—C15—N3 | 0.94 (18) |
C13—C1—C2—C3 | 161.03 (11) | C19—C14—C15—N3 | −178.70 (10) |
C2—C1—C13—C12 | −106.70 (12) | O2—N3—C15—C16 | −6.00 (16) |
C1—C2—C3—C4 | −67.14 (15) | O1—N3—C15—C16 | 174.88 (10) |
C2—C3—C4—C5 | −74.04 (14) | O2—N3—C15—C14 | 173.35 (11) |
C3—C4—C5—C6 | 174.27 (11) | O1—N3—C15—C14 | −5.76 (16) |
C4—C5—C6—C7 | −76.56 (15) | C14—C15—C16—C17 | −0.04 (17) |
C5—C6—C7—C8 | −73.64 (15) | N3—C15—C16—C17 | 179.32 (10) |
C6—C7—C8—C9 | 165.98 (11) | C15—C16—C17—C18 | −0.80 (18) |
C7—C8—C9—C10 | −59.54 (15) | C15—C16—C17—N4 | 176.53 (11) |
C8—C9—C10—C11 | −42.72 (16) | O3—N4—C17—C16 | 6.15 (17) |
C9—C10—C11—C12 | −176.67 (11) | O4—N4—C17—C16 | −172.37 (11) |
C10—C11—C12—C13 | −164.47 (10) | O3—N4—C17—C18 | −176.45 (11) |
C11—C12—C13—C1 | 61.91 (14) | O4—N4—C17—C18 | 5.03 (16) |
N2—N1—C1—C2 | −178.08 (10) | C16—C17—C18—C19 | 1.02 (18) |
N1—C1—C2—C3 | −18.92 (16) | N4—C17—C18—C19 | −176.30 (11) |
N1—C1—C13—C12 | 73.25 (16) | C17—C18—C19—C14 | −0.40 (18) |
N1—N2—C14—C19 | 2.39 (16) | N2—C14—C19—C18 | 179.95 (11) |
N1—N2—C14—C15 | −177.24 (10) | C15—C14—C19—C18 | −0.39 (17) |
N2—C14—C15—C16 | −179.74 (11) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1 | 0.899 (15) | 1.961 (15) | 2.6302 (14) | 129.9 (12) |
C7—H7A···O3i | 0.99 | 2.54 | 3.4363 (18) | 150 |
Symmetry code: (i) −x+2, −y+2, −z+1. |
Experimental details
Crystal data |
Chemical formula | C19H28N4O4 |
Mr | 376.45 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 90 |
a, b, c (Å) | 7.7859 (10), 7.8937 (10), 16.130 (2) |
α, β, γ (°) | 81.979 (7), 77.608 (8), 80.234 (8) |
V (Å3) | 948.7 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.40 × 0.08 × 0.03 |
|
Data collection |
Diffractometer | Nonius KappaCCD (with an Oxford Cryosystems Cryostream cooler) diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26226, 5518, 3974 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.735 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.099, 1.01 |
No. of reflections | 5518 |
No. of parameters | 248 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.34, −0.26 |
Selected torsion angles (º) topC1—N1—N2—C14 | −177.27 (11) | C5—C6—C7—C8 | −73.64 (15) |
N2—N1—C1—C13 | 1.98 (17) | C6—C7—C8—C9 | 165.98 (11) |
C13—C1—C2—C3 | 161.03 (11) | C7—C8—C9—C10 | −59.54 (15) |
C2—C1—C13—C12 | −106.70 (12) | C8—C9—C10—C11 | −42.72 (16) |
C1—C2—C3—C4 | −67.14 (15) | C9—C10—C11—C12 | −176.67 (11) |
C2—C3—C4—C5 | −74.04 (14) | C10—C11—C12—C13 | −164.47 (10) |
C3—C4—C5—C6 | 174.27 (11) | C11—C12—C13—C1 | 61.91 (14) |
C4—C5—C6—C7 | −76.56 (15) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1 | 0.899 (15) | 1.961 (15) | 2.6302 (14) | 129.9 (12) |
C7—H7A···O3i | 0.99 | 2.54 | 3.4363 (18) | 150 |
Symmetry code: (i) −x+2, −y+2, −z+1. |
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The conformations of larger odd-numbered carbocycles such as cyclotridecane are less well characterized than those with an even number of ring atoms. Semiquantitative calculations for eight conformations of cyclotridecane predicted a lowest energy quinquangular [12433] conformation (Dale, 1973). Subsequently, MOLBUILD force-field calculations on five likely conformations and on 1,1-dimethylcyclotridecane suggested a [13333] conformational minimum (Anet & Rawdah, 1978). From experimental studies, low-temperature 1H (127 K) and 13C (123 K) NMR spectra for cyclotridecane show some broadening of resonances, and no information on likely conformers could be extracted (Cheng, 1973). The linewidth for the 1H signal at 127 K was 10 Hz. Several broadened resonances were found in the 13C NMR spectrum at 88 K (Gill et al., 2008).
The X-ray structure of the α,ω-bis (methyldodeca-1,12-diylammonio)hexane dibromide showed a quinquangular [13333] conformation for an ordered model and a similar [13333] and a [346] conformation for a disordered model (Rubin et al., 1984). An X-ray study of the dimethyl-1-hydroxycyclotridecylphosphonate showed two conformations, one of which was the [13333] conformation (Samuel & Weiss, 1969). Two other solid derivatives studied by X-ray crystallography include the cyclotridecanone oxime (II) at 113 K (Groth, 1979) and cyclotridecanone phenylsemicarbazone, (III), at 123 K (Groth, 1980). Both of these crystal structures showed the triangular [337] conformation.
This study reports an X-ray analysis of the crystal structure of (I) at 90 K. As found in (II) and (III), the 13-membered ring is present in a [337] conformation (Fig. 1). In the Dale (1973) system for nomenclature, corner positions are defined as those ring atoms having gauche torsion angles of the same sign on either side. The numbers of bonds between the corners are given in sequence within brackets. The torsion angles for the C13 ring are summarized in Table 1, where C3, C6 and C9 are corners. In (I) and (II), the ring substituent is located on atom C1 (Fig. 1); in (III), the substituent is at an adjacent position (C13). The angle between the mean plane of the 13-ring and the phenyl ring in (I) is 82.66 (2)°. The dinitrophenylhydrazone rings pack parallel to each other around centers at (1, 1, 1/2) and are separated by 3.25 (s.u.?) Å (Fig. 2). The NH group forms an intramolecular hydrogen bond with nitro atom O1, forming a six-membered ring of graph set S(6) (Etter, 1990). Additionally, there is a weaker C—H···O interaction between C7 and O3i, with a C···O distance of 3.436 (2) Å [symmetry code: (i) -x + 2, -y + 2, -z + 1].
The similar macrocyclic ring conformation found for (I), (II) and (III) suggests that the [337] conformation may be preferred. This agrees with the results (Gill et al., 2008) of a stochastic search of cyclotridecane conformational space by MM4. Geminal disubstitution in the dibromide salt and hydroxy phosphonate derivatives described previously may influence their adopted conformations.