Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536803012819/ob6249sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536803012819/ob6249Isup2.hkl |
CCDC reference: 217373
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.010 Å
- R factor = 0.066
- wR factor = 0.166
- Data-to-parameter ratio = 10.9
checkCIF results
No syntax errors found ADDSYM reports no extra symmetry
Alert Level C:
ABSTM_02 Alert C The ratio of expected to reported Tmax/Tmin(RR') is < 0.90 Tmin and Tmax reported: 0.593 0.850 Tmin' and Tmax expected: 0.698 0.850 RR' = 0.850 Please check that your absorption correction is appropriate. SHFSU_01 Alert C The absolute value of parameter shift to su ratio > 0.05 Absolute value of the parameter shift to su ratio given 0.055 Additional refinement cycles may be required. PLAT_354 Alert C Short O-H Bond (0.82A) O8 - H8C = 0.70 Ang. PLAT_369 Alert C Long C(sp2)-C(sp2) Bond C1 - C2 = 1.53 Ang. PLAT_710 Alert C Delete 1-2-3 or 2-3-4 (CIF) Linear Torsion Angle # 3 O5 -ZN -O1 -C1 -14.90 1.40 1.555 1.555 1.555 1.555
0 Alert Level A = Potentially serious problem
0 Alert Level B = Potential problem
5 Alert Level C = Please check
A mixture of orotic acid (0.3 mmol, 0.052 g) and Zn(CH3COO)2·2H2O (0.3 mmol, 0.066 g) in 30 ml of EtOH-water (1:3 v/v) was heated with stirring, the pH of the reaction solution was adjusted to 6 using a dilute solution of NH3·H2O. After evaporating the solution for two weeks, colorless block-like crystals of (I) were isolated by filtration (yield, 65%).
The H atoms of the water molecules (free and coordinated) were located from difference electron-density maps and refined isotropically. The O—H bond lengths are in the range 0.70 (7)–01.04 (11) Å. The H atoms of C—H and N—H groups were placed in calculated positions and were allowed to ride on their respective parent C atoms.
Data collection: SMART (Siemens, 1996); cell refinement: SMART; data reduction: SAINT (Siemens, 1994); program(s) used to solve structure: SHELXTL (Siemens, 1994); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
[Zn(C5H2N2O4)(C12H8N2)(H2O)2]·2H2O | F(000) = 484 |
Mr = 471.72 | Dx = 1.655 Mg m−3 |
Triclinic, P1 | Melting point: not measured K |
a = 7.9351 (6) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.1874 (8) Å | Cell parameters from 2440 reflections |
c = 12.6841 (10) Å | θ = 1.6–25.1° |
α = 91.834 (2)° | µ = 1.35 mm−1 |
β = 94.264 (2)° | T = 293 K |
γ = 111.915 (1)° | Block, colorless |
V = 946.65 (13) Å3 | 0.26 × 0.20 × 0.12 mm |
Z = 2 |
Siemens CCD area-detector diffractometer | 3303 independent reflections |
Radiation source: fine-focus sealed tube | 2680 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
ϕ and ω scans | θmax = 25.1°, θmin = 1.6° |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | h = −5→9 |
Tmin = 0.593, Tmax = 0.850 | k = −12→11 |
4875 measured reflections | l = −14→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.066 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.166 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0626P)2 + 4.4071P] where P = (Fo2 + 2Fc2)/3 |
3303 reflections | (Δ/σ)max = 0.055 |
303 parameters | Δρmax = 0.73 e Å−3 |
0 restraints | Δρmin = −0.80 e Å−3 |
[Zn(C5H2N2O4)(C12H8N2)(H2O)2]·2H2O | γ = 111.915 (1)° |
Mr = 471.72 | V = 946.65 (13) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.9351 (6) Å | Mo Kα radiation |
b = 10.1874 (8) Å | µ = 1.35 mm−1 |
c = 12.6841 (10) Å | T = 293 K |
α = 91.834 (2)° | 0.26 × 0.20 × 0.12 mm |
β = 94.264 (2)° |
Siemens CCD area-detector diffractometer | 3303 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | 2680 reflections with I > 2σ(I) |
Tmin = 0.593, Tmax = 0.850 | Rint = 0.040 |
4875 measured reflections |
R[F2 > 2σ(F2)] = 0.066 | 0 restraints |
wR(F2) = 0.166 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.73 e Å−3 |
3303 reflections | Δρmin = −0.80 e Å−3 |
303 parameters |
Experimental. empirical from equivalent reflections (XEMP in SHELXTL; Siemens,1994) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn | −0.32324 (9) | −0.21650 (7) | 0.26949 (6) | 0.0317 (2) | |
O1 | −0.5194 (5) | −0.1362 (4) | 0.3062 (3) | 0.0357 (10) | |
O2 | −0.8075 (6) | −0.1972 (4) | 0.3424 (4) | 0.0399 (11) | |
O3 | −0.9297 (6) | −0.6982 (5) | 0.4624 (4) | 0.0464 (12) | |
O4 | −0.3755 (6) | −0.5488 (5) | 0.3340 (4) | 0.0427 (11) | |
O5 | −0.1475 (7) | −0.3258 (5) | 0.2432 (4) | 0.0386 (11) | |
O6 | −0.1640 (7) | −0.1179 (5) | 0.4107 (4) | 0.0373 (11) | |
O7 | −0.3003 (9) | −0.7889 (7) | 0.3779 (6) | 0.0682 (18) | |
O8 | −0.3453 (9) | −0.0914 (6) | 0.5807 (4) | 0.0489 (13) | |
N1 | −0.5197 (6) | −0.3929 (5) | 0.3323 (4) | 0.0291 (11) | |
N2 | −0.6549 (6) | −0.6195 (5) | 0.3959 (4) | 0.0325 (11) | |
H2A | −0.6466 | −0.7015 | 0.4081 | 0.039* | |
N3 | −0.4592 (7) | −0.2757 (5) | 0.1055 (4) | 0.0352 (12) | |
N4 | −0.1784 (7) | −0.0371 (5) | 0.1839 (4) | 0.0342 (12) | |
C1 | −0.6680 (8) | −0.2238 (6) | 0.3328 (5) | 0.0311 (13) | |
C2 | −0.6728 (8) | −0.3719 (6) | 0.3556 (4) | 0.0279 (12) | |
C3 | −0.8166 (8) | −0.4666 (6) | 0.3974 (5) | 0.0339 (14) | |
H3A | −0.9193 | −0.4442 | 0.4109 | 0.041* | |
C4 | −0.8119 (8) | −0.6014 (7) | 0.4210 (5) | 0.0338 (14) | |
C5 | −0.5108 (8) | −0.5197 (6) | 0.3533 (5) | 0.0310 (13) | |
C6 | −0.5972 (10) | −0.3906 (8) | 0.0691 (6) | 0.0497 (18) | |
H6A | −0.6419 | −0.4653 | 0.1151 | 0.060* | |
C7 | −0.6820 (12) | −0.4092 (9) | −0.0336 (6) | 0.060 (2) | |
H7A | −0.7821 | −0.4943 | −0.0564 | 0.072* | |
C8 | −0.6193 (11) | −0.3041 (9) | −0.1000 (6) | 0.058 (2) | |
H8A | −0.6764 | −0.3148 | −0.1700 | 0.070* | |
C9 | −0.4694 (10) | −0.1788 (8) | −0.0658 (5) | 0.0437 (16) | |
C10 | −0.3950 (12) | −0.0629 (9) | −0.1293 (6) | 0.057 (2) | |
H10A | −0.4479 | −0.0683 | −0.1998 | 0.069* | |
C11 | −0.2522 (12) | 0.0544 (9) | −0.0932 (6) | 0.056 (2) | |
H11A | −0.2040 | 0.1291 | −0.1386 | 0.067* | |
C12 | −0.1707 (10) | 0.0679 (8) | 0.0148 (5) | 0.0436 (16) | |
C13 | −0.0229 (11) | 0.1875 (8) | 0.0577 (6) | 0.055 (2) | |
H13A | 0.0334 | 0.2639 | 0.0150 | 0.066* | |
C14 | 0.0388 (10) | 0.1932 (8) | 0.1598 (7) | 0.055 (2) | |
H14A | 0.1376 | 0.2750 | 0.1899 | 0.066* | |
C15 | −0.0415 (9) | 0.0795 (7) | 0.2225 (6) | 0.0462 (17) | |
H15A | 0.0036 | 0.0864 | 0.2948 | 0.055* | |
C16 | −0.2434 (8) | −0.0420 (7) | 0.0802 (5) | 0.0335 (14) | |
C17 | −0.3939 (9) | −0.1699 (7) | 0.0401 (5) | 0.0363 (14) | |
H5A | −0.046 (10) | −0.282 (7) | 0.284 (6) | 0.04 (2)* | |
H5B | −0.205 (10) | −0.400 (8) | 0.273 (6) | 0.05 (2)* | |
H6B | −0.120 (12) | −0.160 (9) | 0.438 (7) | 0.07 (3)* | |
H6C | −0.228 (13) | −0.096 (10) | 0.461 (8) | 0.09 (3)* | |
H7B | −0.309 (13) | −0.705 (11) | 0.379 (7) | 0.08 (3)* | |
H7C | −0.210 (13) | −0.771 (10) | 0.409 (7) | 0.08 (3)* | |
H8B | −0.477 (15) | −0.099 (10) | 0.593 (8) | 0.10 (3)* | |
H8C | −0.300 (10) | −0.022 (7) | 0.603 (5) | 0.03 (2)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn | 0.0298 (4) | 0.0335 (4) | 0.0307 (4) | 0.0100 (3) | 0.0032 (3) | 0.0103 (3) |
O1 | 0.033 (2) | 0.029 (2) | 0.045 (3) | 0.0093 (18) | 0.0070 (19) | 0.0118 (19) |
O2 | 0.031 (2) | 0.035 (2) | 0.055 (3) | 0.0129 (19) | 0.005 (2) | 0.012 (2) |
O3 | 0.036 (2) | 0.043 (3) | 0.061 (3) | 0.012 (2) | 0.014 (2) | 0.024 (2) |
O4 | 0.038 (2) | 0.037 (2) | 0.057 (3) | 0.017 (2) | 0.011 (2) | 0.013 (2) |
O5 | 0.029 (2) | 0.040 (3) | 0.043 (3) | 0.008 (2) | 0.003 (2) | 0.003 (2) |
O6 | 0.039 (3) | 0.043 (3) | 0.031 (2) | 0.018 (2) | −0.006 (2) | 0.004 (2) |
O7 | 0.049 (4) | 0.051 (4) | 0.104 (5) | 0.024 (3) | −0.019 (3) | −0.003 (3) |
O8 | 0.060 (4) | 0.036 (3) | 0.056 (3) | 0.023 (3) | 0.007 (3) | 0.000 (3) |
N1 | 0.028 (3) | 0.029 (3) | 0.031 (3) | 0.012 (2) | 0.006 (2) | 0.007 (2) |
N2 | 0.029 (3) | 0.030 (3) | 0.038 (3) | 0.009 (2) | 0.000 (2) | 0.011 (2) |
N3 | 0.037 (3) | 0.039 (3) | 0.027 (3) | 0.012 (2) | −0.001 (2) | 0.006 (2) |
N4 | 0.036 (3) | 0.038 (3) | 0.031 (3) | 0.015 (2) | 0.009 (2) | 0.010 (2) |
C1 | 0.028 (3) | 0.030 (3) | 0.035 (3) | 0.010 (3) | 0.000 (3) | 0.005 (3) |
C2 | 0.031 (3) | 0.029 (3) | 0.023 (3) | 0.010 (2) | 0.001 (2) | 0.005 (2) |
C3 | 0.031 (3) | 0.035 (3) | 0.041 (4) | 0.016 (3) | 0.007 (3) | 0.011 (3) |
C4 | 0.032 (3) | 0.037 (3) | 0.031 (3) | 0.011 (3) | 0.002 (3) | 0.013 (3) |
C5 | 0.029 (3) | 0.033 (3) | 0.031 (3) | 0.011 (3) | 0.003 (2) | 0.004 (3) |
C6 | 0.047 (4) | 0.050 (4) | 0.041 (4) | 0.007 (3) | −0.004 (3) | 0.002 (3) |
C7 | 0.067 (5) | 0.054 (5) | 0.048 (4) | 0.015 (4) | −0.015 (4) | −0.009 (4) |
C8 | 0.068 (5) | 0.078 (6) | 0.036 (4) | 0.042 (5) | −0.014 (4) | −0.011 (4) |
C9 | 0.055 (4) | 0.060 (4) | 0.027 (3) | 0.034 (4) | 0.001 (3) | 0.007 (3) |
C10 | 0.080 (6) | 0.082 (6) | 0.031 (4) | 0.054 (5) | 0.010 (4) | 0.018 (4) |
C11 | 0.075 (5) | 0.073 (5) | 0.035 (4) | 0.041 (5) | 0.023 (4) | 0.037 (4) |
C12 | 0.049 (4) | 0.052 (4) | 0.044 (4) | 0.032 (3) | 0.013 (3) | 0.023 (3) |
C13 | 0.062 (5) | 0.045 (4) | 0.061 (5) | 0.019 (4) | 0.022 (4) | 0.030 (4) |
C14 | 0.049 (4) | 0.043 (4) | 0.068 (5) | 0.008 (3) | 0.013 (4) | 0.016 (4) |
C15 | 0.039 (4) | 0.042 (4) | 0.048 (4) | 0.005 (3) | −0.002 (3) | 0.007 (3) |
C16 | 0.038 (3) | 0.045 (4) | 0.031 (3) | 0.028 (3) | 0.009 (3) | 0.013 (3) |
C17 | 0.040 (3) | 0.045 (4) | 0.032 (3) | 0.024 (3) | 0.007 (3) | 0.004 (3) |
Zn—O1 | 2.084 (4) | N4—C16 | 1.370 (8) |
Zn—O6 | 2.101 (5) | C1—C2 | 1.533 (8) |
Zn—N1 | 2.116 (5) | C2—C3 | 1.347 (8) |
Zn—O5 | 2.122 (5) | C3—C4 | 1.428 (8) |
Zn—N4 | 2.140 (5) | C3—H3A | 0.9500 |
Zn—N3 | 2.226 (5) | C6—C7 | 1.393 (10) |
O1—C1 | 1.263 (7) | C6—H6A | 0.9500 |
O2—C1 | 1.247 (7) | C7—C8 | 1.352 (11) |
O3—C4 | 1.241 (7) | C7—H7A | 0.9500 |
O4—C5 | 1.253 (7) | C8—C9 | 1.410 (11) |
O5—H5B | 0.84 (8) | C8—H8A | 0.9500 |
O5—H5A | 0.88 (8) | C9—C17 | 1.416 (9) |
O6—H6C | 0.92 (10) | C9—C10 | 1.416 (10) |
O6—H6B | 0.73 (9) | C10—C11 | 1.341 (11) |
O7—H7C | 0.75 (10) | C10—H10A | 0.9500 |
O7—H7B | 0.89 (10) | C11—C12 | 1.450 (10) |
O8—H8C | 0.70 (7) | C11—H11A | 0.9500 |
O8—H8B | 1.04 (11) | C12—C16 | 1.387 (9) |
N1—C5 | 1.354 (7) | C12—C13 | 1.397 (11) |
N1—C2 | 1.361 (7) | C13—C14 | 1.342 (11) |
N2—C5 | 1.375 (7) | C13—H13A | 0.9500 |
N2—C4 | 1.382 (8) | C14—C15 | 1.401 (10) |
N2—H2A | 0.8800 | C14—H14A | 0.9500 |
N3—C6 | 1.310 (8) | C15—H15A | 0.9500 |
N3—C17 | 1.350 (8) | C16—C17 | 1.445 (9) |
N4—C15 | 1.324 (8) | ||
O1—Zn—O6 | 90.1 (2) | C4—C3—H3A | 120.6 |
O1—Zn—N1 | 78.07 (16) | O3—C4—N2 | 119.1 (6) |
O6—Zn—N1 | 99.13 (19) | O3—C4—C3 | 126.8 (6) |
O1—Zn—O5 | 171.39 (18) | N2—C4—C3 | 114.1 (5) |
O6—Zn—O5 | 90.4 (2) | O4—C5—N1 | 121.7 (5) |
N1—Zn—O5 | 93.37 (19) | O4—C5—N2 | 119.4 (5) |
O1—Zn—N4 | 93.25 (17) | N1—C5—N2 | 118.9 (5) |
O6—Zn—N4 | 90.89 (19) | N3—C6—C7 | 123.5 (7) |
N1—Zn—N4 | 166.67 (18) | N3—C6—H6A | 118.2 |
O5—Zn—N4 | 95.33 (19) | C7—C6—H6A | 118.2 |
O1—Zn—N3 | 89.30 (18) | C8—C7—C6 | 118.9 (7) |
O6—Zn—N3 | 167.46 (19) | C8—C7—H7A | 120.6 |
N1—Zn—N3 | 93.00 (18) | C6—C7—H7A | 120.6 |
O5—Zn—N3 | 92.01 (19) | C7—C8—C9 | 120.2 (7) |
N4—Zn—N3 | 76.64 (19) | C7—C8—H8A | 119.9 |
C1—O1—Zn | 116.9 (4) | C9—C8—H8A | 119.9 |
Zn—O5—H5B | 97 (5) | C8—C9—C17 | 116.5 (6) |
Zn—O5—H5A | 107 (5) | C8—C9—C10 | 124.3 (7) |
H5B—O5—H5A | 106 (7) | C17—C9—C10 | 119.2 (7) |
Zn—O6—H6C | 114 (6) | C11—C10—C9 | 122.1 (7) |
Zn—O6—H6B | 115 (7) | C11—C10—H10A | 119.0 |
H6C—O6—H6B | 104 (9) | C9—C10—H10A | 119.0 |
H7C—O7—H7B | 101 (9) | C10—C11—C12 | 120.5 (6) |
H8C—O8—H8B | 97 (8) | C10—C11—H11A | 119.7 |
C5—N1—C2 | 117.2 (5) | C12—C11—H11A | 119.7 |
C5—N1—Zn | 128.8 (4) | C16—C12—C13 | 117.6 (6) |
C2—N1—Zn | 114.1 (4) | C16—C12—C11 | 118.9 (7) |
C5—N2—C4 | 125.4 (5) | C13—C12—C11 | 123.4 (6) |
C5—N2—H2A | 117.3 | C14—C13—C12 | 119.3 (6) |
C4—N2—H2A | 117.3 | C14—C13—H13A | 120.3 |
C6—N3—C17 | 118.5 (6) | C12—C13—H13A | 120.3 |
C6—N3—Zn | 129.1 (5) | C13—C14—C15 | 120.5 (7) |
C17—N3—Zn | 112.2 (4) | C13—C14—H14A | 119.7 |
C15—N4—C16 | 117.5 (5) | C15—C14—H14A | 119.7 |
C15—N4—Zn | 126.8 (4) | N4—C15—C14 | 121.9 (7) |
C16—N4—Zn | 115.5 (4) | N4—C15—H15A | 119.0 |
O2—C1—O1 | 124.6 (5) | C14—C15—H15A | 119.0 |
O2—C1—C2 | 118.9 (5) | N4—C16—C12 | 123.0 (6) |
O1—C1—C2 | 116.5 (5) | N4—C16—C17 | 116.5 (5) |
C3—C2—N1 | 125.7 (5) | C12—C16—C17 | 120.4 (6) |
C3—C2—C1 | 120.8 (5) | N3—C17—C9 | 122.4 (6) |
N1—C2—C1 | 113.5 (5) | N3—C17—C16 | 118.8 (5) |
C2—C3—C4 | 118.7 (6) | C9—C17—C16 | 118.8 (6) |
C2—C3—H3A | 120.6 | ||
O6—Zn—O1—C1 | −108.5 (4) | C5—N2—C4—O3 | −177.6 (6) |
N1—Zn—O1—C1 | −9.2 (4) | C5—N2—C4—C3 | 0.9 (9) |
O5—Zn—O1—C1 | −14.9 (14) | C2—C3—C4—O3 | 177.6 (6) |
N4—Zn—O1—C1 | 160.6 (4) | C2—C3—C4—N2 | −0.8 (8) |
N3—Zn—O1—C1 | 84.0 (4) | C2—N1—C5—O4 | 179.7 (5) |
O1—Zn—N1—C5 | −173.8 (5) | Zn—N1—C5—O4 | −1.6 (9) |
O6—Zn—N1—C5 | −85.7 (5) | C2—N1—C5—N2 | 0.4 (8) |
O5—Zn—N1—C5 | 5.3 (5) | Zn—N1—C5—N2 | 179.1 (4) |
N4—Zn—N1—C5 | 136.0 (8) | C4—N2—C5—O4 | 179.9 (6) |
N3—Zn—N1—C5 | 97.5 (5) | C4—N2—C5—N1 | −0.8 (9) |
O1—Zn—N1—C2 | 4.9 (4) | C17—N3—C6—C7 | −0.7 (11) |
O6—Zn—N1—C2 | 93.1 (4) | Zn—N3—C6—C7 | 173.4 (6) |
O5—Zn—N1—C2 | −176.0 (4) | N3—C6—C7—C8 | 0.3 (13) |
N4—Zn—N1—C2 | −45.3 (10) | C6—C7—C8—C9 | 0.7 (12) |
N3—Zn—N1—C2 | −83.8 (4) | C7—C8—C9—C17 | −1.1 (11) |
O1—Zn—N3—C6 | −85.2 (6) | C7—C8—C9—C10 | −179.6 (8) |
O6—Zn—N3—C6 | −172.7 (9) | C8—C9—C10—C11 | 179.9 (7) |
N1—Zn—N3—C6 | −7.2 (6) | C17—C9—C10—C11 | 1.5 (11) |
O5—Zn—N3—C6 | 86.3 (6) | C9—C10—C11—C12 | −1.6 (12) |
N4—Zn—N3—C6 | −178.7 (6) | C10—C11—C12—C16 | −0.3 (11) |
O1—Zn—N3—C17 | 89.3 (4) | C10—C11—C12—C13 | −179.5 (7) |
O6—Zn—N3—C17 | 1.8 (12) | C16—C12—C13—C14 | −2.0 (11) |
N1—Zn—N3—C17 | 167.3 (4) | C11—C12—C13—C14 | 177.2 (7) |
O5—Zn—N3—C17 | −99.2 (4) | C12—C13—C14—C15 | 1.3 (12) |
N4—Zn—N3—C17 | −4.2 (4) | C16—N4—C15—C14 | −1.7 (10) |
O1—Zn—N4—C15 | 91.3 (6) | Zn—N4—C15—C14 | −177.4 (5) |
O6—Zn—N4—C15 | 1.1 (6) | C13—C14—C15—N4 | 0.6 (12) |
N1—Zn—N4—C15 | 140.1 (8) | C15—N4—C16—C12 | 0.9 (9) |
O5—Zn—N4—C15 | −89.4 (6) | Zn—N4—C16—C12 | 177.1 (5) |
N3—Zn—N4—C15 | 179.8 (6) | C15—N4—C16—C17 | −179.5 (6) |
O1—Zn—N4—C16 | −84.5 (4) | Zn—N4—C16—C17 | −3.3 (7) |
O6—Zn—N4—C16 | −174.7 (4) | C13—C12—C16—N4 | 1.0 (10) |
N1—Zn—N4—C16 | −35.7 (11) | C11—C12—C16—N4 | −178.3 (6) |
O5—Zn—N4—C16 | 94.8 (4) | C13—C12—C16—C17 | −178.7 (6) |
N3—Zn—N4—C16 | 4.0 (4) | C11—C12—C16—C17 | 2.1 (9) |
Zn—O1—C1—O2 | −169.3 (5) | C6—N3—C17—C9 | 0.3 (10) |
Zn—O1—C1—C2 | 11.5 (7) | Zn—N3—C17—C9 | −174.8 (5) |
C5—N1—C2—C3 | −0.3 (9) | C6—N3—C17—C16 | 179.1 (6) |
Zn—N1—C2—C3 | −179.2 (5) | Zn—N3—C17—C16 | 4.0 (7) |
C5—N1—C2—C1 | 178.0 (5) | C8—C9—C17—N3 | 0.6 (10) |
Zn—N1—C2—C1 | −0.9 (6) | C10—C9—C17—N3 | 179.2 (6) |
O2—C1—C2—C3 | −7.8 (9) | C8—C9—C17—C16 | −178.2 (6) |
O1—C1—C2—C3 | 171.5 (6) | C10—C9—C17—C16 | 0.3 (9) |
O2—C1—C2—N1 | 173.8 (5) | N4—C16—C17—N3 | −0.7 (8) |
O1—C1—C2—N1 | −7.0 (8) | C12—C16—C17—N3 | 179.0 (6) |
N1—C2—C3—C4 | 0.5 (9) | N4—C16—C17—C9 | 178.2 (5) |
C1—C2—C3—C4 | −177.7 (5) | C12—C16—C17—C9 | −2.1 (9) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O8i | 0.88 | 2.10 | 2.971 (5) | 172 |
O5—H5A···O2ii | 0.88 (8) | 1.85 (8) | 2.708 (7) | 166 (7) |
O5—H5B···O4 | 0.84 (8) | 1.85 (8) | 2.678 (7) | 167 (9) |
O6—H6B···O3i | 0.73 (10) | 2.08 (9) | 2.776 (7) | 162 (10) |
O6—H6C···O8 | 0.92 (11) | 1.85 (11) | 2.741 (9) | 164 (9) |
O7—H7B···O4 | 0.89 (10) | 1.94 (11) | 2.789 (9) | 160 (10) |
O7—H7C···O3ii | 0.75 (10) | 2.11 (10) | 2.844 (9) | 166 (8) |
O8—H8B···O7i | 1.04 (13) | 1.79 (12) | 2.715 (10) | 146 (8) |
O8—H8C···O2iii | 0.70 (7) | 2.14 (7) | 2.836 (7) | 171 (9) |
Symmetry codes: (i) −x−1, −y−1, −z+1; (ii) x+1, y, z; (iii) −x−1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C5H2N2O4)(C12H8N2)(H2O)2]·2H2O |
Mr | 471.72 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 7.9351 (6), 10.1874 (8), 12.6841 (10) |
α, β, γ (°) | 91.834 (2), 94.264 (2), 111.915 (1) |
V (Å3) | 946.65 (13) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.35 |
Crystal size (mm) | 0.26 × 0.20 × 0.12 |
Data collection | |
Diffractometer | Siemens CCD area-detector diffractometer |
Absorption correction | Empirical (using intensity measurements) (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.593, 0.850 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4875, 3303, 2680 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.596 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.066, 0.166, 1.12 |
No. of reflections | 3303 |
No. of parameters | 303 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.73, −0.80 |
Computer programs: SMART (Siemens, 1996), SMART, SAINT (Siemens, 1994), SHELXTL (Siemens, 1994), SHELXTL.
Zn—O1 | 2.084 (4) | Zn—O5 | 2.122 (5) |
Zn—O6 | 2.101 (5) | Zn—N4 | 2.140 (5) |
Zn—N1 | 2.116 (5) | Zn—N3 | 2.226 (5) |
O1—Zn—O6 | 90.1 (2) | N1—Zn—N4 | 166.67 (18) |
O1—Zn—N1 | 78.07 (16) | O5—Zn—N4 | 95.33 (19) |
O6—Zn—N1 | 99.13 (19) | O1—Zn—N3 | 89.30 (18) |
O1—Zn—O5 | 171.39 (18) | O6—Zn—N3 | 167.46 (19) |
O6—Zn—O5 | 90.4 (2) | N1—Zn—N3 | 93.00 (18) |
N1—Zn—O5 | 93.37 (19) | O5—Zn—N3 | 92.01 (19) |
O1—Zn—N4 | 93.25 (17) | N4—Zn—N3 | 76.64 (19) |
O6—Zn—N4 | 90.89 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O8i | 0.88 | 2.10 | 2.971 (5) | 172 |
O5—H5A···O2ii | 0.88 (8) | 1.85 (8) | 2.708 (7) | 166 (7) |
O5—H5B···O4 | 0.84 (8) | 1.85 (8) | 2.678 (7) | 167 (9) |
O6—H6B···O3i | 0.73 (10) | 2.08 (9) | 2.776 (7) | 162 (10) |
O6—H6C···O8 | 0.92 (11) | 1.85 (11) | 2.741 (9) | 164 (9) |
O7—H7B···O4 | 0.89 (10) | 1.94 (11) | 2.789 (9) | 160 (10) |
O7—H7C···O3ii | 0.75 (10) | 2.11 (10) | 2.844 (9) | 166 (8) |
O8—H8B···O7i | 1.04 (13) | 1.79 (12) | 2.715 (10) | 146 (8) |
O8—H8C···O2iii | 0.70 (7) | 2.14 (7) | 2.836 (7) | 171 (9) |
Symmetry codes: (i) −x−1, −y−1, −z+1; (ii) x+1, y, z; (iii) −x−1, −y, −z+1. |
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Orotic acid (2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid; vitamin B13; H3dtpc) is an important pyrimidine derivative as the effective precursor in the biosynthesis of pyrimidine base of nucleic acids in living organisms, and so it occupies a unique role in bioinorganic and pharmaceutical studies (Leberman et al., 1955). Aside from the biological interest, orotic acid is also a good organic building block in coordination chemistry. Its ketonic and enolic tautomers, along with its asymmetric geometry, make it to be a versatile multidentate organic ligand (Karipdes et al., 1986). It contains a potential hydrogen-bond acceptor and hydrogen-bond donor, and can display different hydrogen-bonding interactions in supramolecular complexes (Xu et al., 2000). Many complexes of orotate ligand have been reported in the past decade (Hambley et al., 1995). The structure of the title compound, (I), has been determined in order to study further the coordination chemistry of the orotic acid.
The title complex is mononuclear, as shown in Fig. l. The central ZnII atom is coordinated by two water molecules, two N atoms from 1,10-phenanthroline, and by N and carboxylate O atoms from the orotate ligand, forming a distorted octahedral coordination geometry. The Zn—O6 and Zn—N3 bond lengths are significantly longer than the corresponding distances (Zn—O5 and Zn—N4), suggesting that N3—Zn—O6 is the axial direction of the d10 Jahn–Teller distortion. Atom N3 of the phenanthroline ligand and water atom O6 occupy the axial positions with the N3—Zn—O6 angle being 167.46 (19)°, while the equatorial plane is formed by atom N1 and carboxylate atom O1 of the orotate ligand, a water molecule (O5) and an N atom (N4), with the angles N1—Zn—N4 and O5—Zn—O1 being 166.67 (18) and 171.39 (18)°, respectively.
There are intermolecular N—H···O and O—H···O hydrogen-bonding interactions (Table 2), which result in a two-dimensional layer structure (Fig. 2). A three-dimensional structure (Fig. 3) is finally formed by face-to-face π–π-stacking interactions between the 1,10-phenanthroline ligands of neighboring layers, with distances between the aromatic rings ranging from 3.20 to 3.60 Å.