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In this study, we introduce a novel indole-containing pyridine-based Schiff base, (E)-2-({[bis­(pyridin-2-yl)methyl­idene]hydrazin-1-yl­idene}meth­yl)-1H-indole, C20H15N5 (2-DPHI), and its cadmium(II) com­plex poly[[2-({[bis­(pyridin-2-yl)methyl­idene]hydrazin-1-yl­idene}meth­yl)-1H-indole]di-μ-chlorido-cadmium(II)], [CdCl2(C20H15N5)]n (pCd2), as potential anti­cancer agents. The Schiff base was synthesized by reacting dipyridylmethanone hydrazone with indole-2-formaldehyde, while the cadmium com­plex was prepared by combining CdCl2 and 2-DPHI in methanol at room tem­per­a­ture. Both com­pounds were evaluated for their cytotoxicity against three human cancer cell lines (A375, A549 and HeLa) and a normal cell line (HFF-1). The ligand 2-DPHI exhibited notable anti­tumour activity, with an IC50 value of 12.22 µM against A375 and 15.17 µM against A549 after 48 h, while the pCd2 complex showed an even stronger inhibition of A375 cells, with an IC50 value of 4.88 µM, outperforming both 2-DPHI and CdCl2. Both com­pounds demonstrated lower toxicity towards normal cells com­pared to cancer cells. The structures of 2-DPHI and pCd2 were fully characterized using single-crystal X-ray diffraction, elemental analysis, high-resolution mass spectrometry and FT–IR, 1H NMR, 13C NMR and UV–Vis spec­tros­copy.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229624010167/oj3023sup1.cif
Contains datablocks 2-DPHI, pCd2, global

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229624010167/oj30232-DPHIsup4.cml
Supplementary material

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229624010167/oj30232-DPHIsup2.hkl
Contains datablock 2-DPHI

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229624010167/oj3023pCd2sup3.hkl
Contains datablock pCd2

pdf

Portable Document Format (PDF) file https://doi.org/10.1107/S2053229624010167/oj3023sup5.pdf
Supplementary material

CCDC references: 2392155; 2392154

Computing details top

(E)-2-({[Bis(pyridin-2-yl)methylidene]hydrazin-1-ylidene}methyl)-1H-indole (2-DPHI) top
Crystal data top
C20H15N5Dx = 1.296 Mg m3
Mr = 325.37Melting point: 454(2) K
Orthorhombic, Pbc21Mo Kα radiation, λ = 0.71073 Å
a = 4.8448 (2) ÅCell parameters from 380 reflections
b = 25.9645 (12) Åθ = 2.5–26.0°
c = 26.5071 (11) ŵ = 0.08 mm1
V = 3334.4 (2) Å3T = 293 K
Z = 8Block, yellow
F(000) = 13600.35 × 0.26 × 0.18 mm
Data collection top
Bruker SMART CCD area detector
diffractometer
4373 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.070
phi and ω scansθmax = 26.4°, θmin = 3.2°
Absorption correction: multi-scan
(SADABS; Bruker, 2000)
h = 65
Tmin = 0.975, Tmax = 0.986k = 3232
37250 measured reflectionsl = 3333
6783 independent reflections
Refinement top
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.056 w = 1/[σ2(Fo2) + (0.0686P)2]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.148(Δ/σ)max < 0.001
S = 0.99Δρmax = 0.22 e Å3
6783 reflectionsΔρmin = 0.19 e Å3
459 parametersAbsolute structure: Flack x determined using 1587 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
1 restraintAbsolute structure parameter: 0.6 (10)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.5103 (10)0.36082 (19)0.52405 (18)0.0451 (11)
C1A0.9955 (9)0.57995 (19)0.65181 (17)0.0429 (11)
C20.4897 (10)0.4028 (2)0.55471 (18)0.0495 (12)
H20.59240.40870.58380.059*
C2A1.0194 (10)0.6196 (2)0.61838 (18)0.0494 (12)
H2A0.92050.62350.58850.059*
C30.2850 (9)0.43608 (18)0.53464 (17)0.0440 (11)
C3A1.2233 (10)0.65398 (18)0.63737 (18)0.0460 (12)
C40.1763 (11)0.4840 (2)0.5481 (2)0.0561 (14)
H40.23740.50070.57710.067*
C4A1.3292 (11)0.7015 (2)0.6214 (2)0.0620 (15)
H4A1.26720.71660.59170.074*
C50.0221 (11)0.5061 (2)0.5181 (2)0.0602 (14)
H50.09050.53850.52630.072*
C5A1.5251 (12)0.7253 (2)0.6503 (2)0.0708 (17)
H5A1.59320.75730.64060.085*
C60.1222 (11)0.4809 (2)0.4757 (2)0.0543 (14)
H60.25990.49650.45660.065*
C6A1.6247 (13)0.7015 (3)0.6946 (2)0.0691 (18)
H6A1.76330.71770.71300.083*
C70.0228 (10)0.4334 (2)0.46122 (18)0.0516 (13)
H70.09050.41650.43280.062*
C7A1.5234 (11)0.6558 (2)0.71100 (19)0.0535 (13)
H7A1.58840.64090.74060.064*
C80.1826 (9)0.41189 (19)0.49086 (18)0.0415 (12)
C8A1.3211 (9)0.63213 (18)0.68261 (17)0.0409 (11)
C90.7005 (11)0.3183 (2)0.5251 (2)0.0489 (12)
C9A0.8070 (10)0.53721 (19)0.65111 (18)0.0465 (12)
H9A0.69580.53180.62300.056*
C101.0073 (9)0.23255 (17)0.45278 (17)0.0426 (11)
C10A0.4881 (9)0.45259 (18)0.72424 (17)0.0444 (11)
C110.9581 (9)0.25950 (18)0.40385 (18)0.0413 (11)
C11A0.5331 (9)0.48062 (19)0.77260 (17)0.0434 (12)
C120.7753 (10)0.2420 (2)0.3685 (2)0.0610 (15)
H120.67510.21200.37400.073*
C12A0.7167 (10)0.4636 (2)0.8087 (2)0.0616 (14)
H12A0.81930.43380.80360.074*
C130.7421 (12)0.2697 (3)0.3243 (2)0.0663 (17)
H130.61220.25950.30050.080*
C13A0.7450 (12)0.4919 (3)0.8529 (2)0.0686 (17)
H13A0.86900.48180.87780.082*
C140.9037 (13)0.3125 (3)0.3161 (2)0.0675 (17)
H140.89240.33100.28610.081*
C14A0.5887 (14)0.5346 (3)0.8590 (2)0.0678 (16)
H14A0.59990.55380.88860.081*
C151.0805 (13)0.3268 (2)0.3534 (2)0.0658 (15)
H151.18740.35600.34810.079*
C15A0.4149 (13)0.5490 (2)0.8213 (2)0.0668 (15)
H15A0.30820.57840.82590.080*
C161.1919 (10)0.18714 (17)0.4538 (2)0.0462 (11)
C16A0.3026 (10)0.40739 (18)0.72329 (19)0.0471 (12)
C171.3224 (11)0.1720 (2)0.4978 (2)0.0557 (14)
H171.29680.19000.52780.067*
C17A0.1734 (13)0.3910 (2)0.6802 (2)0.0611 (15)
C181.4930 (12)0.1290 (2)0.4958 (3)0.0679 (16)
H181.58480.11770.52460.081*
C18A0.0027 (12)0.3484 (2)0.6817 (3)0.0721 (17)
H18A0.08810.33710.65280.087*
C191.5240 (12)0.1036 (2)0.4508 (3)0.0683 (16)
H191.63810.07490.44860.082*
C19A0.0289 (12)0.3233 (2)0.7267 (3)0.0722 (17)
H19A0.14040.29430.72920.087*
C201.3857 (13)0.1208 (2)0.4095 (3)0.0715 (17)
H201.40490.10250.37960.086*
C20A0.1083 (13)0.3422 (2)0.7680 (3)0.0733 (17)
H20A0.08700.32490.79850.088*
N10.3240 (7)0.36618 (15)0.48493 (15)0.0448 (9)
H10.30000.34450.46080.054*
N1A1.1799 (8)0.58679 (16)0.69029 (15)0.0454 (10)
H1A1.20380.56610.71530.055*
N20.7073 (8)0.28769 (17)0.48846 (16)0.0502 (11)
N2A0.7909 (8)0.50676 (16)0.68852 (15)0.0502 (10)
N30.8999 (9)0.24691 (16)0.49465 (15)0.0507 (10)
N3A0.6034 (9)0.46654 (16)0.68247 (16)0.0536 (11)
N41.1120 (9)0.30182 (15)0.39720 (15)0.0501 (10)
N4A0.3891 (10)0.52358 (17)0.77842 (16)0.0534 (11)
N51.2222 (9)0.16288 (16)0.40940 (18)0.0609 (12)
N5A0.2705 (9)0.38381 (17)0.76738 (18)0.0627 (12)
H90.820 (8)0.3177 (17)0.5508 (17)0.040 (12)*
H17A0.194 (10)0.408 (2)0.653 (2)0.059 (16)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.053 (3)0.048 (3)0.034 (2)0.002 (2)0.007 (2)0.000 (2)
C1A0.046 (3)0.046 (3)0.036 (2)0.001 (2)0.001 (2)0.002 (2)
C20.054 (3)0.059 (3)0.036 (2)0.003 (3)0.003 (2)0.011 (2)
C2A0.060 (3)0.052 (3)0.036 (3)0.004 (3)0.004 (2)0.005 (2)
C30.049 (3)0.044 (3)0.039 (3)0.003 (2)0.012 (2)0.007 (2)
C3A0.056 (3)0.038 (3)0.044 (3)0.003 (2)0.008 (2)0.001 (2)
C40.058 (3)0.050 (3)0.060 (3)0.001 (3)0.010 (3)0.015 (3)
C4A0.076 (4)0.050 (3)0.060 (3)0.004 (3)0.008 (3)0.014 (3)
C50.061 (3)0.051 (3)0.069 (3)0.011 (3)0.015 (3)0.001 (3)
C5A0.084 (4)0.048 (3)0.081 (4)0.017 (3)0.015 (4)0.001 (3)
C60.058 (3)0.053 (3)0.052 (3)0.011 (3)0.006 (3)0.011 (3)
C6A0.075 (4)0.067 (4)0.064 (4)0.019 (3)0.003 (3)0.010 (3)
C70.055 (3)0.060 (3)0.039 (3)0.003 (3)0.007 (2)0.000 (3)
C7A0.059 (3)0.057 (3)0.045 (3)0.003 (3)0.000 (2)0.007 (3)
C80.046 (3)0.041 (3)0.037 (3)0.003 (2)0.013 (2)0.003 (2)
C8A0.043 (3)0.042 (3)0.038 (2)0.001 (2)0.005 (2)0.005 (2)
C90.059 (3)0.049 (3)0.038 (3)0.006 (3)0.007 (3)0.006 (3)
C9A0.057 (3)0.049 (3)0.033 (3)0.009 (2)0.005 (2)0.002 (2)
C100.056 (3)0.034 (3)0.038 (2)0.000 (2)0.009 (2)0.002 (2)
C10A0.056 (3)0.035 (3)0.043 (3)0.004 (2)0.009 (2)0.001 (2)
C110.052 (3)0.034 (3)0.038 (3)0.013 (2)0.004 (2)0.005 (2)
C11A0.053 (3)0.039 (3)0.038 (3)0.007 (2)0.008 (2)0.007 (2)
C120.061 (3)0.056 (4)0.065 (4)0.012 (3)0.004 (3)0.015 (3)
C12A0.063 (3)0.060 (4)0.062 (4)0.005 (3)0.002 (3)0.007 (3)
C130.069 (4)0.086 (5)0.044 (3)0.015 (3)0.012 (3)0.013 (3)
C13A0.072 (4)0.087 (5)0.047 (3)0.012 (4)0.015 (3)0.010 (3)
C140.085 (4)0.076 (4)0.042 (3)0.029 (4)0.001 (3)0.004 (3)
C14A0.090 (4)0.063 (4)0.050 (3)0.019 (4)0.003 (3)0.007 (3)
C150.094 (4)0.045 (3)0.059 (4)0.002 (3)0.004 (3)0.013 (3)
C15A0.093 (4)0.058 (4)0.050 (3)0.005 (3)0.001 (3)0.009 (3)
C160.056 (3)0.033 (3)0.050 (3)0.002 (2)0.011 (3)0.004 (2)
C16A0.055 (3)0.036 (3)0.050 (3)0.001 (2)0.015 (2)0.005 (2)
C170.066 (3)0.042 (3)0.059 (3)0.003 (3)0.000 (3)0.006 (3)
C17A0.078 (4)0.053 (4)0.052 (4)0.012 (3)0.004 (3)0.000 (3)
C180.077 (4)0.049 (4)0.078 (4)0.009 (3)0.001 (3)0.010 (3)
C18A0.079 (4)0.065 (4)0.073 (4)0.022 (3)0.003 (3)0.011 (4)
C190.074 (4)0.041 (3)0.090 (4)0.016 (3)0.013 (4)0.008 (3)
C19A0.079 (4)0.046 (3)0.092 (5)0.020 (3)0.006 (4)0.003 (4)
C200.090 (4)0.053 (4)0.071 (4)0.017 (3)0.011 (4)0.007 (3)
C20A0.105 (5)0.046 (3)0.068 (4)0.021 (3)0.021 (4)0.006 (3)
N10.054 (2)0.043 (2)0.038 (2)0.0003 (19)0.003 (2)0.0100 (18)
N1A0.052 (2)0.050 (2)0.034 (2)0.003 (2)0.0019 (19)0.0041 (19)
N20.064 (3)0.047 (3)0.039 (2)0.007 (2)0.010 (2)0.005 (2)
N2A0.056 (2)0.053 (3)0.041 (2)0.014 (2)0.0078 (19)0.001 (2)
N30.065 (3)0.039 (2)0.047 (2)0.011 (2)0.007 (2)0.003 (2)
N3A0.064 (3)0.051 (3)0.046 (2)0.016 (2)0.013 (2)0.002 (2)
N40.065 (3)0.038 (2)0.048 (2)0.004 (2)0.004 (2)0.005 (2)
N4A0.075 (3)0.042 (3)0.043 (3)0.003 (2)0.007 (2)0.001 (2)
N50.082 (3)0.044 (3)0.057 (3)0.018 (2)0.011 (2)0.003 (2)
N5A0.086 (3)0.045 (3)0.057 (3)0.013 (2)0.012 (3)0.005 (2)
Geometric parameters (Å, º) top
C1—C21.364 (6)C11—C121.367 (7)
C1—N11.382 (6)C11A—N4A1.325 (6)
C1—C91.437 (7)C11A—C12A1.379 (7)
C1A—C2A1.363 (7)C12—C131.383 (8)
C1A—N1A1.368 (6)C12—H120.9300
C1A—C9A1.437 (7)C12A—C13A1.391 (8)
C2—C31.419 (7)C12A—H12A0.9300
C2—H20.9300C13—C141.377 (8)
C2A—C3A1.424 (7)C13—H130.9300
C2A—H2A0.9300C13A—C14A1.351 (8)
C3—C41.397 (7)C13A—H13A0.9300
C3—C81.410 (7)C14—C151.360 (8)
C3A—C4A1.401 (7)C14—H140.9300
C3A—C8A1.409 (6)C14A—C15A1.360 (8)
C4—C51.374 (8)C14A—H14A0.9300
C4—H40.9300C15—N41.338 (7)
C4A—C5A1.366 (8)C15—H150.9300
C4A—H4A0.9300C15A—N4A1.320 (7)
C5—C61.387 (8)C15A—H15A0.9300
C5—H50.9300C16—N51.343 (7)
C5A—C6A1.413 (8)C16—C171.385 (7)
C5A—H5A0.9300C16A—N5A1.329 (6)
C6—C71.379 (7)C16A—C17A1.370 (7)
C6—H60.9300C17—C181.389 (7)
C6A—C7A1.355 (8)C17—H170.9300
C6A—H6A0.9300C17A—C18A1.382 (8)
C7—C81.385 (7)C17A—H17A0.85 (5)
C7—H70.9300C18—C191.372 (8)
C7A—C8A1.381 (7)C18—H180.9300
C7A—H7A0.9300C18A—C19A1.367 (9)
C8—N11.380 (6)C18A—H18A0.9300
C8A—N1A1.377 (6)C19—C201.359 (9)
C9—N21.256 (6)C19—H190.9300
C9—H90.89 (4)C19A—C20A1.372 (9)
C9A—N2A1.271 (6)C19A—H19A0.9300
C9A—H9A0.9300C20—N51.349 (7)
C10—N31.281 (6)C20—H200.9300
C10—C161.480 (6)C20A—N5A1.336 (7)
C10—C111.493 (6)C20A—H20A0.9300
C10A—N3A1.292 (6)N1—H10.8600
C10A—C16A1.478 (6)N1A—H1A0.8600
C10A—C11A1.490 (7)N2—N31.421 (6)
C11—N41.340 (6)N2A—N3A1.393 (5)
C2—C1—N1108.6 (4)C11—C12—H12120.6
C2—C1—C9130.5 (5)C13—C12—H12120.6
N1—C1—C9120.7 (4)C11A—C12A—C13A118.6 (5)
C2A—C1A—N1A109.4 (4)C11A—C12A—H12A120.7
C2A—C1A—C9A128.9 (4)C13A—C12A—H12A120.7
N1A—C1A—C9A121.7 (4)C14—C13—C12119.2 (5)
C1—C2—C3108.3 (4)C14—C13—H13120.4
C1—C2—H2125.8C12—C13—H13120.4
C3—C2—H2125.8C14A—C13A—C12A118.7 (5)
C1A—C2A—C3A107.6 (4)C14A—C13A—H13A120.7
C1A—C2A—H2A126.2C12A—C13A—H13A120.7
C3A—C2A—H2A126.2C15—C14—C13117.5 (5)
C4—C3—C8118.3 (5)C15—C14—H14121.2
C4—C3—C2135.2 (5)C13—C14—H14121.2
C8—C3—C2106.5 (4)C13A—C14A—C15A118.9 (6)
C4A—C3A—C8A119.2 (5)C13A—C14A—H14A120.5
C4A—C3A—C2A134.4 (5)C15A—C14A—H14A120.5
C8A—C3A—C2A106.4 (4)N4—C15—C14124.8 (6)
C5—C4—C3119.2 (5)N4—C15—H15117.6
C5—C4—H4120.4C14—C15—H15117.6
C3—C4—H4120.4N4A—C15A—C14A123.6 (6)
C5A—C4A—C3A118.9 (5)N4A—C15A—H15A118.2
C5A—C4A—H4A120.6C14A—C15A—H15A118.2
C3A—C4A—H4A120.6N5—C16—C17123.8 (4)
C4—C5—C6121.2 (5)N5—C16—C10115.1 (4)
C4—C5—H5119.4C17—C16—C10121.2 (5)
C6—C5—H5119.4N5A—C16A—C17A122.5 (5)
C4A—C5A—C6A120.4 (5)N5A—C16A—C10A115.0 (5)
C4A—C5A—H5A119.8C17A—C16A—C10A122.5 (5)
C6A—C5A—H5A119.8C16—C17—C18117.9 (5)
C7—C6—C5121.6 (5)C16—C17—H17121.1
C7—C6—H6119.2C18—C17—H17121.1
C5—C6—H6119.2C16A—C17A—C18A119.9 (6)
C7A—C6A—C5A121.7 (6)C16A—C17A—H17A119 (4)
C7A—C6A—H6A119.2C18A—C17A—H17A121 (4)
C5A—C6A—H6A119.2C19—C18—C17119.0 (6)
C6—C7—C8117.0 (5)C19—C18—H18120.5
C6—C7—H7121.5C17—C18—H18120.5
C8—C7—H7121.5C19A—C18A—C17A118.2 (6)
C6A—C7A—C8A118.2 (5)C19A—C18A—H18A120.9
C6A—C7A—H7A120.9C17A—C18A—H18A120.9
C8A—C7A—H7A120.9C20—C19—C18119.2 (5)
N1—C8—C7129.7 (5)C20—C19—H19120.4
N1—C8—C3107.6 (4)C18—C19—H19120.4
C7—C8—C3122.7 (5)C18A—C19A—C20A118.2 (5)
N1A—C8A—C7A130.8 (5)C18A—C19A—H19A120.9
N1A—C8A—C3A107.6 (4)C20A—C19A—H19A120.9
C7A—C8A—C3A121.5 (5)N5—C20—C19123.9 (6)
N2—C9—C1119.2 (5)N5—C20—H20118.0
N2—C9—H9124 (3)C19—C20—H20118.0
C1—C9—H9116 (3)N5A—C20A—C19A124.3 (6)
N2A—C9A—C1A120.6 (4)N5A—C20A—H20A117.8
N2A—C9A—H9A119.7C19A—C20A—H20A117.8
C1A—C9A—H9A119.7C8—N1—C1109.0 (4)
N3—C10—C16117.5 (4)C8—N1—H1125.5
N3—C10—C11123.4 (4)C1—N1—H1125.5
C16—C10—C11119.1 (4)C1A—N1A—C8A109.0 (4)
N3A—C10A—C16A118.1 (4)C1A—N1A—H1A125.5
N3A—C10A—C11A122.5 (4)C8A—N1A—H1A125.5
C16A—C10A—C11A119.4 (4)C9—N2—N3113.6 (4)
N4—C11—C12122.9 (5)C9A—N2A—N3A114.6 (4)
N4—C11—C10114.2 (4)C10—N3—N2112.6 (4)
C12—C11—C10122.9 (5)C10A—N3A—N2A113.2 (4)
N4A—C11A—C12A121.9 (5)C15—N4—C11116.6 (5)
N4A—C11A—C10A115.7 (4)C15A—N4A—C11A118.1 (5)
C12A—C11A—C10A122.3 (5)C16—N5—C20116.2 (5)
C11—C12—C13118.9 (5)C16A—N5A—C20A116.9 (5)
N1—C1—C2—C30.1 (6)C12A—C13A—C14A—C15A1.7 (9)
C9—C1—C2—C3174.1 (5)C13—C14—C15—N41.1 (9)
N1A—C1A—C2A—C3A1.8 (6)C13A—C14A—C15A—N4A0.1 (10)
C9A—C1A—C2A—C3A176.0 (5)N3—C10—C16—N5157.9 (5)
C1—C2—C3—C4178.8 (5)C11—C10—C16—N522.8 (6)
C1—C2—C3—C80.5 (6)N3—C10—C16—C1722.6 (7)
C1A—C2A—C3A—C4A177.1 (5)C11—C10—C16—C17156.7 (5)
C1A—C2A—C3A—C8A1.3 (6)N3A—C10A—C16A—N5A156.8 (5)
C8—C3—C4—C51.0 (7)C11A—C10A—C16A—N5A23.9 (6)
C2—C3—C4—C5178.2 (6)N3A—C10A—C16A—C17A23.2 (7)
C8A—C3A—C4A—C5A0.1 (8)C11A—C10A—C16A—C17A156.1 (5)
C2A—C3A—C4A—C5A178.3 (6)N5—C16—C17—C180.4 (8)
C3—C4—C5—C62.2 (8)C10—C16—C17—C18179.9 (4)
C3A—C4A—C5A—C6A1.9 (8)N5A—C16A—C17A—C18A0.1 (9)
C4—C5—C6—C71.6 (8)C10A—C16A—C17A—C18A179.8 (5)
C4A—C5A—C6A—C7A2.6 (9)C16—C17—C18—C190.2 (8)
C5—C6—C7—C80.2 (7)C16A—C17A—C18A—C19A0.8 (9)
C5A—C6A—C7A—C8A1.1 (8)C17—C18—C19—C200.5 (9)
C6—C7—C8—N1178.1 (5)C17A—C18A—C19A—C20A0.6 (9)
C6—C7—C8—C31.4 (7)C18—C19—C20—N51.8 (10)
C4—C3—C8—N1178.8 (4)C18A—C19A—C20A—N5A0.4 (10)
C2—C3—C8—N10.6 (5)C7—C8—N1—C1179.9 (5)
C4—C3—C8—C70.8 (7)C3—C8—N1—C10.6 (5)
C2—C3—C8—C7179.8 (4)C2—C1—N1—C80.3 (5)
C6A—C7A—C8A—N1A178.9 (5)C9—C1—N1—C8175.2 (4)
C6A—C7A—C8A—C3A0.9 (7)C2A—C1A—N1A—C8A1.6 (5)
C4A—C3A—C8A—N1A178.3 (4)C9A—C1A—N1A—C8A176.4 (4)
C2A—C3A—C8A—N1A0.3 (5)C7A—C8A—N1A—C1A179.1 (5)
C4A—C3A—C8A—C7A1.5 (7)C3A—C8A—N1A—C1A0.7 (5)
C2A—C3A—C8A—C7A179.8 (4)C1—C9—N2—N3178.8 (4)
C2—C1—C9—N2169.4 (5)C1A—C9A—N2A—N3A179.0 (4)
N1—C1—C9—N24.3 (7)C16—C10—N3—N2174.5 (4)
C2A—C1A—C9A—N2A171.7 (5)C11—C10—N3—N26.2 (7)
N1A—C1A—C9A—N2A5.9 (7)C9—N2—N3—C10147.2 (5)
N3—C10—C11—N480.6 (6)C16A—C10A—N3A—N2A175.0 (4)
C16—C10—C11—N498.7 (5)C11A—C10A—N3A—N2A5.7 (7)
N3—C10—C11—C12100.5 (6)C9A—N2A—N3A—C10A147.6 (5)
C16—C10—C11—C1280.2 (6)C14—C15—N4—C110.6 (8)
N3A—C10A—C11A—N4A79.2 (6)C12—C11—N4—C150.4 (7)
C16A—C10A—C11A—N4A100.0 (5)C10—C11—N4—C15178.5 (4)
N3A—C10A—C11A—C12A99.6 (6)C14A—C15A—N4A—C11A2.6 (9)
C16A—C10A—C11A—C12A81.1 (6)C12A—C11A—N4A—C15A3.3 (8)
N4—C11—C12—C131.6 (7)C10A—C11A—N4A—C15A177.9 (5)
C10—C11—C12—C13179.6 (5)C17—C16—N5—C201.6 (8)
N4A—C11A—C12A—C13A1.6 (8)C10—C16—N5—C20178.9 (4)
C10A—C11A—C12A—C13A179.7 (5)C19—C20—N5—C162.3 (9)
C11—C12—C13—C143.3 (8)C17A—C16A—N5A—C20A1.2 (8)
C11A—C12A—C13A—C14A1.0 (8)C10A—C16A—N5A—C20A178.8 (4)
C12—C13—C14—C153.0 (8)C19A—C20A—N5A—C16A1.3 (9)
Poly[[2-({[bis(pyridin-2-yl)methylidene]hydrazin-1-ylidene}methyl)-1H-indole]di-µ-chlorido-cadmium(II)] (pCd2) top
Crystal data top
[CdCl2(C20H15N5)]Dx = 1.584 Mg m3
Mr = 508.67Cu Kα radiation, λ = 1.54184 Å
Trigonal, R3c:HCell parameters from 6284 reflections
a = 34.6379 (7) Åθ = 9.5–71.0°
c = 18.4784 (3) ŵ = 10.62 mm1
V = 19199.9 (8) Å3T = 293 K
Z = 36Needle, clear light yellow
F(000) = 90720.21 × 0.06 × 0.03 mm
Data collection top
Bruker SMART CCD area detector
diffractometer
3651 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.020
phi and ω scansθmax = 70.9°, θmin = 4.4°
Absorption correction: multi-scan
(SADABS; Bruker, 2000)
h = 3642
Tmin = 0.487, Tmax = 0.727k = 3741
13934 measured reflectionsl = 2022
4079 independent reflections
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.022 w = 1/[σ2(Fo2) + (0.0235P)2 + 26.2978P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.057(Δ/σ)max = 0.003
S = 1.09Δρmax = 0.38 e Å3
4079 reflectionsΔρmin = 0.31 e Å3
254 parametersExtinction correction: SHELXL2016 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0000025 (7)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.09400 (9)0.24472 (8)0.42912 (14)0.0454 (6)
C20.06504 (10)0.21722 (9)0.37752 (15)0.0533 (7)
H20.0525340.2255150.3404230.064*
C30.05759 (9)0.17379 (9)0.39091 (15)0.0485 (6)
C40.03165 (10)0.13185 (10)0.35796 (18)0.0623 (8)
H40.0144190.1288480.3174690.075*
C50.03210 (11)0.09567 (10)0.38614 (19)0.0674 (9)
H50.0149700.0679050.3645840.081*
C60.05778 (11)0.09964 (10)0.44659 (19)0.0660 (8)
H60.0575100.0743920.4643530.079*
C70.08359 (10)0.13989 (10)0.48092 (16)0.0565 (7)
H70.1005340.1421510.5214260.068*
C80.08335 (9)0.17700 (8)0.45273 (14)0.0444 (6)
C90.10845 (9)0.29131 (8)0.43834 (14)0.0458 (6)
H90.0975440.3044950.4067420.055*
C100.17982 (7)0.39155 (8)0.50038 (12)0.0350 (5)
C110.18337 (7)0.43616 (8)0.50310 (12)0.0362 (5)
C120.22394 (9)0.47533 (9)0.49885 (16)0.0529 (7)
H120.2502480.4744850.4942820.063*
C130.22500 (10)0.51565 (9)0.50145 (17)0.0625 (8)
H130.2520620.5422220.4992120.075*
C140.18595 (10)0.51626 (9)0.50734 (16)0.0582 (7)
H140.1858950.5430660.5091790.070*
C150.14660 (9)0.47596 (9)0.51048 (15)0.0487 (6)
H150.1199550.4761840.5146350.058*
C160.22104 (7)0.38849 (8)0.50950 (12)0.0368 (5)
C170.23295 (9)0.36554 (9)0.46175 (14)0.0480 (6)
H170.2150690.3508350.4220900.058*
C180.27198 (10)0.36487 (11)0.47407 (16)0.0578 (7)
H180.2809670.3499410.4425390.069*
C190.29716 (9)0.38652 (11)0.53336 (16)0.0587 (8)
H190.3234510.3863950.5429710.070*
C200.28294 (9)0.40852 (10)0.57865 (15)0.0541 (7)
H200.3001850.4229400.6190390.065*
N10.10545 (7)0.22063 (7)0.47458 (11)0.0452 (5)
H10.1234660.2311800.5106720.054*
N20.13572 (6)0.31548 (6)0.48820 (11)0.0410 (5)
N30.14077 (6)0.35823 (6)0.48902 (10)0.0373 (4)
N40.14507 (6)0.43697 (6)0.50783 (10)0.0386 (4)
N50.24575 (7)0.41024 (7)0.56764 (11)0.0432 (5)
Cd10.07678 (2)0.37014 (2)0.49986 (2)0.03375 (6)
Cl10.02612 (2)0.28840 (2)0.52485 (3)0.04579 (15)
Cl20.03104 (2)0.40899 (2)0.47715 (3)0.04509 (14)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0442 (14)0.0389 (13)0.0567 (15)0.0234 (12)0.0098 (12)0.0045 (11)
C20.0572 (17)0.0483 (15)0.0599 (16)0.0304 (14)0.0176 (13)0.0073 (13)
C30.0468 (15)0.0452 (14)0.0546 (15)0.0237 (12)0.0067 (12)0.0079 (12)
C40.0547 (18)0.0521 (17)0.0742 (19)0.0224 (14)0.0130 (15)0.0161 (15)
C50.0594 (19)0.0410 (16)0.091 (2)0.0170 (14)0.0048 (17)0.0122 (15)
C60.071 (2)0.0404 (15)0.089 (2)0.0293 (15)0.0187 (18)0.0090 (15)
C70.0626 (18)0.0527 (17)0.0606 (17)0.0336 (15)0.0057 (14)0.0070 (13)
C80.0448 (14)0.0406 (13)0.0509 (14)0.0236 (12)0.0005 (11)0.0031 (11)
C90.0448 (14)0.0408 (13)0.0561 (15)0.0246 (12)0.0064 (12)0.0026 (11)
C100.0306 (11)0.0398 (12)0.0361 (11)0.0186 (10)0.0042 (9)0.0022 (9)
C110.0319 (11)0.0350 (12)0.0383 (12)0.0142 (10)0.0020 (9)0.0018 (9)
C120.0358 (13)0.0404 (14)0.0752 (18)0.0135 (11)0.0020 (12)0.0019 (13)
C130.0495 (17)0.0356 (14)0.087 (2)0.0098 (13)0.0072 (15)0.0006 (14)
C140.0664 (19)0.0361 (14)0.0722 (18)0.0258 (14)0.0094 (15)0.0083 (13)
C150.0480 (15)0.0425 (14)0.0612 (16)0.0267 (12)0.0046 (12)0.0107 (12)
C160.0305 (11)0.0412 (13)0.0413 (12)0.0199 (10)0.0027 (9)0.0014 (10)
C170.0422 (14)0.0582 (16)0.0466 (14)0.0273 (13)0.0048 (11)0.0121 (12)
C180.0544 (17)0.076 (2)0.0598 (17)0.0448 (16)0.0005 (14)0.0145 (15)
C190.0468 (16)0.083 (2)0.0652 (18)0.0464 (16)0.0113 (13)0.0137 (16)
C200.0445 (15)0.0737 (19)0.0540 (15)0.0370 (15)0.0159 (12)0.0161 (14)
N10.0476 (12)0.0420 (11)0.0511 (12)0.0261 (10)0.0115 (10)0.0079 (9)
N20.0355 (10)0.0347 (10)0.0559 (12)0.0199 (9)0.0042 (9)0.0011 (9)
N30.0364 (10)0.0329 (10)0.0470 (11)0.0207 (9)0.0049 (8)0.0019 (8)
N40.0351 (10)0.0350 (10)0.0447 (11)0.0168 (9)0.0031 (8)0.0054 (8)
N50.0358 (11)0.0544 (13)0.0453 (11)0.0270 (10)0.0063 (9)0.0095 (9)
Cd10.02975 (9)0.03423 (10)0.03777 (10)0.01637 (7)0.00226 (6)0.00158 (6)
Cl10.0447 (3)0.0366 (3)0.0374 (3)0.0064 (2)0.0041 (2)0.0020 (2)
Cl20.0501 (3)0.0659 (4)0.0368 (3)0.0421 (3)0.0017 (2)0.0043 (3)
Geometric parameters (Å, º) top
C1—C21.366 (4)C12—C131.379 (4)
C1—N11.375 (3)C13—C141.368 (4)
C1—C91.441 (3)C14—C151.381 (4)
C2—C31.415 (4)C15—N41.326 (3)
C3—C41.408 (4)C16—N51.345 (3)
C3—C81.419 (4)C16—C171.381 (3)
C4—C51.364 (4)C17—C181.383 (4)
C5—C61.391 (5)C18—C191.367 (4)
C6—C71.378 (4)C19—C201.378 (4)
C7—C81.391 (4)C20—N51.335 (3)
C8—N11.370 (3)N2—N31.401 (3)
C9—N21.285 (3)N3—Cd12.4575 (19)
C10—N31.282 (3)N4—Cd12.3450 (19)
C10—C111.489 (3)Cd1—Cl12.5181 (6)
C10—C161.493 (3)Cd1—Cl22.5746 (6)
C11—N41.344 (3)Cd1—Cl1i2.6561 (6)
C11—C121.384 (3)Cd1—Cl2ii2.6612 (6)
C2—C1—N1109.7 (2)C19—C18—C17118.9 (2)
C2—C1—C9125.9 (2)C18—C19—C20118.9 (2)
N1—C1—C9124.3 (2)N5—C20—C19123.5 (2)
C1—C2—C3107.4 (2)C8—N1—C1108.5 (2)
C4—C3—C2134.8 (3)C9—N2—N3111.0 (2)
C4—C3—C8118.7 (3)C10—N3—N2118.11 (19)
C2—C3—C8106.5 (2)C10—N3—Cd1118.00 (15)
C5—C4—C3119.2 (3)N2—N3—Cd1122.12 (14)
C4—C5—C6121.1 (3)C15—N4—C11119.1 (2)
C7—C6—C5121.9 (3)C15—N4—Cd1120.98 (17)
C6—C7—C8117.5 (3)C11—N4—Cd1119.64 (15)
N1—C8—C7130.6 (3)C20—N5—C16117.1 (2)
N1—C8—C3107.8 (2)N4—Cd1—N367.76 (6)
C7—C8—C3121.5 (3)N4—Cd1—Cl1152.90 (5)
N2—C9—C1123.0 (2)N3—Cd1—Cl190.34 (5)
N3—C10—C11116.3 (2)N4—Cd1—Cl294.30 (5)
N3—C10—C16124.8 (2)N3—Cd1—Cl2156.49 (5)
C11—C10—C16119.0 (2)Cl1—Cd1—Cl2110.65 (2)
N4—C11—C12120.8 (2)N4—Cd1—Cl1i85.72 (5)
N4—C11—C10117.0 (2)N3—Cd1—Cl1i102.69 (5)
C12—C11—C10122.2 (2)Cl1—Cd1—Cl1i83.75 (2)
C13—C12—C11119.4 (3)Cl2—Cd1—Cl1i90.436 (19)
C14—C13—C12119.5 (3)N4—Cd1—Cl2ii96.11 (5)
C13—C14—C15118.1 (3)N3—Cd1—Cl2ii83.49 (5)
N4—C15—C14123.0 (3)Cl1—Cd1—Cl2ii97.04 (2)
N5—C16—C17122.9 (2)Cl2—Cd1—Cl2ii83.511 (19)
N5—C16—C10114.4 (2)Cl1i—Cd1—Cl2ii173.78 (2)
C17—C16—C10122.7 (2)Cd1—Cl1—Cd1i94.281 (19)
C16—C17—C18118.7 (2)Cd1—Cl2—Cd1ii96.248 (19)
Symmetry codes: (i) xy+1/3, y+2/3, z+7/6; (ii) y1/3, x+1/3, z+5/6.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···N5i0.862.132.987 (3)179
C9—H9···Cl2ii0.932.713.588 (3)159
C12—H12···N50.932.542.995 (4)110
C18—H18···Cl2iii0.932.833.607 (3)142
C20—H20···Cl1iv0.932.783.431 (3)128
Symmetry codes: (i) xy+1/3, y+2/3, z+7/6; (ii) y1/3, x+1/3, z+5/6; (iii) y+2/3, x+1/3, z1/6; (iv) x+1/3, xy+2/3, z+1/6.
Comparison of some bond lengths (Å) of two 2-DPHI molecules in the asymmetric unit top
BondValueBondValueDifference (Å)
N2—N31.421 (6)N2A—N3A1.393 (5)0.028
C5—C61.387 (8)C5A—C6A1.413 (8)0.026
C13—C141.377 (8)C13A—C14A1.351 (8)0.026
C6—C71.379 (7)C6A—C7A1.355 (8)0.024
Comparison of some bond angles (°) of two 2-DPHI molecules in the asymmetric unit top
AngleValueAngleValueDifference (°)
C16—C17—C18117.9 (5)C16A—C17A—C18A119.9 (6)2.0
N4—C11—C10114.2 (4)N4A—C11A—C10A115.7 (4)1.5
C11—N4—C15116.6 (5)C11A—N4A—C15A118.1 (5)1.5
C2—C1—C9130.5 (5)C2A—C1A—C9A128.9 (4)1.4
C13—C14—C15117.5 (5)C13A—C14A—C15A118.9 (6)1.4
N2—C9—C1119.2 (5)N2A—C9A—C1A120.6 (4)1.4
C10—C16—C17121.2 (5)C10A—C16A—C17A122.5 (5)1.3
N5—C16—C17123.8 (4)N5A—C16A—C17A122.5 (5)1.3
C6—C7—C8117.0 (5)C6A—C7A—C8A118.2 (5)1.2
N4—C15—C14124.8 (6)N4A—C15A—C14A123.6 (6)1.2
C3—C8—C7122.7 (5)C3A—C8A—C7A121.5 (5)1.2
N1—C8—C7129.7 (5)N1A—C8A—C7A130.8 (5)1.1
N3—C10—C11123.4 (4)N3A—C10A—C11A122.5 (4)1.1
C18—C19—C20119.2 (5)C18A—C19A—C20A118.2 (5)1.0
N1—C1—C9120.7 (4)N1A—C1A—C9A121.7 (4)1.0
N4—C11—C12122.9 (5)N4A—C11A—C12A121.9 (5)1.0
N3—N2—C9113.6 (4)N3A—N2A—C9A114.6 (4)1.0
Hydrogen-bond geometries (Å, °) of 2-DPHI top
D—H···AD—HH···AD···AD—H···A
N1—H1···N4i0.862.213.042 (6)162
N1A—H1A···N4Ai0.862.203.030 (6)163
Symmetry code: (i) x-1, y, z.
ππ interaction geometries (Å, °) of 2-DPHI top
d represents the distance between the centroids of the two rings; α is the dihedral angle between the two rings; β is the angle between the line connecting the two centroids and the normal to ring I; γ is the angle between the line connecting the two centroids and the normal to ring J; e denotes the perpendicular distance from the centroid of ring I to ring J; f denotes the perpendicular distance from the centroid of ring J to ring I. Ring definitions: ring 1 N1/C1–C3/C8; ring 2 C3–C8; ring 3: N1A/C1A–C3A/C8A; ring 4: C3A–C8A.
ππ interactions (IJ)dαβγef
Cg1Cg2i3.876 (3)1.2729.0929.183.3843.387
Cg2Cg1ii3.875 (3)1.2729.1829.093.3863.384
Cg3Cg4i3.886 (3)1.6428.4228.533.4143.418
Cg4Cg3ii3.886 (3)1.6428.5328.423.4183.414
Symmetry codes: (i) x+1, y, z; (ii) x-1, y, z.
Characteristic UV absorption peaks of 2-DPHI and the corresponding predicted major orbital transitions top
λexp (nm)λcal (nm)fMO transitions (configurations)
205.5219.990.3973HL+6 (38.9%)
H-5L+2 (5.6%)
HL+4 (5.4%)
221.360.4692H-1L+6 (30.9%)
H-1L+5 (25.4%)
HL+6 (6.5%)
HL+5 (5.0%)
252242.730.2481HL+3 (15.6%)
HL+1 (10.9%)
H-2L+1 (8.2%)
HL+2 (6.0%)
H-3L+2 (5.8%)
H-5L (5.1%)
249.260.36947H-5 L (17.0%)
H L+2 (14.1%)
H L+1 (8.4%)
H L+5 (8.0%)
H-10 L (7.5%)
366.5363.801.41636HL (81.9%)
IC50M) values of the Schiff base complex, its corresponding ligand and the metal salt across four cell lines top
CompoundA375 (95% CI)A549 (95% CI)HeLa (95% CI)HFF-1 (95% CI)
2-DPHI12.22 (10.98–13.62)15.17 (13.42–17.19)>100>100
pCd24.88 (4.43–5.35)20.16 (19.19–21.18)5.20 (4.90–5.51)98.11 (97.89–98.33)
CdCl210.70 (9.47–12.00)16.55 (15.21–17.94)3.63 (3.33–3.95)21.31 (21.02–21.67)
Cisplatin5.88 (5.42–6.36)5.05 (4.13–6.18)5.96 (5.42–6.56)33.34 (33.04–33.64)
 

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