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The title compound, [Cu(NO3)2(C4H4N2)2]n, crystallizes as a linear polymeric compound with one pyrimidine ligand bridging between two CuII atoms and a second pyrimidine ligand coordinated in a monodentate manner. The distorted octahedral geometry around the CuII atom consists of two pyrimidine N atoms at distances of 2.033 (4) and 2.025 (4) Å, and two nitrate O atoms at distances at 1.987 (3) and 1.973 (3) Å. The apical positions are occupied by an N atom of a bridging pyrimidine ligand [2.291 (4) Å] and a nitrate O atom at a long distance of 2.781 (3) Å. The basal plane is almost planar, with trans angles of 176.23 (14) and 165.34 (15)°.
Supporting information
CCDC reference: 150725
Data collection: AFC-7S software; cell refinement: AFC-7S software; data reduction: TEXSAN (Molecular Structure Corporation, 1993); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); software used to prepare material for publication: SHELXL97.
Crystal data top
[Cu(NO3)2(C4H4N2)2] | Dx = 1.923 Mg m−3 |
Mr = 347.74 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pca21 | Cell parameters from 25 reflections |
a = 9.987 (2) Å | θ = 3.5–7.0° |
b = 8.451 (2) Å | µ = 1.86 mm−1 |
c = 14.233 (3) Å | T = 193 K |
V = 1201.3 (5) Å3 | Prismatic, blue |
Z = 4 | 0.35 × 0.30 × 0.25 mm |
F(000) = 700 | |
Data collection top
Rigaku AFC-7S diffractometer | 1109 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.000 |
Graphite monochromator | θmax = 25.2°, θmin = 2.9° |
ω–2θ scans | h = −11→0 |
Absorption correction: ψ scan (North et al., 1968) | k = −10→0 |
Tmin = 0.581, Tmax = 0.628 | l = −17→0 |
1133 measured reflections | 3 standard reflections every 200 reflections |
1133 independent reflections | intensity decay: 0.0% |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H-atom parameters constrained |
wR(F2) = 0.077 | Calculated w = 1/[σ2(Fo2) + (0.0576P)2 + 0.5672P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max < 0.001 |
1133 reflections | Δρmax = 0.54 e Å−3 |
190 parameters | Δρmin = −0.86 e Å−3 |
1 restraint | Absolute structure: Flack (1983) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.07 (2) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cu1 | 0.37947 (4) | 0.69514 (5) | 0.99719 (6) | 0.01549 (18) | |
N11 | 0.4215 (4) | 0.9034 (4) | 0.9321 (3) | 0.0187 (8) | |
C12 | 0.3432 (5) | 1.0296 (5) | 0.9422 (4) | 0.0254 (10) | |
H12A | 0.2676 | 1.0186 | 0.9821 | 0.031* | |
N13 | 0.3609 (5) | 1.1698 (5) | 0.9015 (4) | 0.0302 (11) | |
C14 | 0.4682 (5) | 1.1841 (5) | 0.8477 (4) | 0.0260 (11) | |
H14A | 0.4855 | 1.2831 | 0.8186 | 0.031* | |
C15 | 0.5547 (5) | 1.0624 (6) | 0.8326 (4) | 0.0263 (10) | |
H15A | 0.6309 | 1.0751 | 0.7934 | 0.032* | |
C16 | 0.5281 (5) | 0.9192 (5) | 0.8765 (3) | 0.0211 (9) | |
H16A | 0.5862 | 0.8317 | 0.8667 | 0.025* | |
N21 | 0.2914 (3) | 0.4958 (4) | 1.0463 (3) | 0.0167 (7) | |
C22 | 0.1673 (4) | 0.4613 (5) | 1.0180 (3) | 0.0160 (9) | |
H22A | 0.1281 | 0.5282 | 0.9720 | 0.019* | |
N23 | 0.0944 (4) | 0.3410 (5) | 1.0492 (3) | 0.0172 (7) | |
C24 | 0.1526 (5) | 0.2442 (5) | 1.1116 (3) | 0.0202 (9) | |
H24A | 0.1034 | 0.1567 | 1.1354 | 0.024* | |
C25 | 0.2806 (5) | 0.2680 (5) | 1.1420 (4) | 0.0250 (10) | |
H25A | 0.3218 | 0.1970 | 1.1849 | 0.030* | |
C26 | 0.3483 (5) | 0.3988 (6) | 1.1084 (4) | 0.0221 (10) | |
H26A | 0.4366 | 0.4198 | 1.1298 | 0.027* | |
N1 | 0.3498 (4) | 0.5863 (4) | 0.8156 (3) | 0.0199 (8) | |
O11 | 0.4396 (3) | 0.5845 (4) | 0.8815 (2) | 0.0208 (7) | |
O12 | 0.2377 (3) | 0.6370 (4) | 0.8349 (3) | 0.0307 (8) | |
O13 | 0.3831 (3) | 0.5384 (5) | 0.7379 (3) | 0.0321 (9) | |
N2 | 0.2054 (4) | 0.8363 (4) | 1.1238 (3) | 0.0212 (8) | |
O21 | 0.3322 (4) | 0.8058 (3) | 1.1147 (3) | 0.0213 (7) | |
O22 | 0.1315 (3) | 0.8058 (4) | 1.0571 (3) | 0.0284 (10) | |
O23 | 0.1673 (4) | 0.8979 (4) | 1.1965 (2) | 0.0292 (8) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cu1 | 0.0148 (3) | 0.0127 (3) | 0.0190 (3) | −0.00081 (16) | 0.0008 (2) | −0.0009 (3) |
N11 | 0.0159 (17) | 0.0147 (16) | 0.025 (2) | −0.0034 (15) | −0.0001 (16) | 0.0017 (16) |
C12 | 0.024 (2) | 0.021 (2) | 0.031 (3) | 0.0037 (19) | 0.005 (2) | 0.002 (2) |
N13 | 0.033 (3) | 0.0196 (19) | 0.038 (3) | 0.0035 (17) | 0.005 (2) | 0.005 (2) |
C14 | 0.032 (3) | 0.017 (2) | 0.029 (3) | −0.0041 (18) | −0.002 (2) | 0.0048 (18) |
C15 | 0.024 (2) | 0.030 (3) | 0.026 (2) | −0.009 (2) | 0.0039 (19) | 0.007 (2) |
C16 | 0.021 (2) | 0.019 (2) | 0.023 (2) | −0.0029 (18) | 0.001 (2) | 0.0007 (18) |
N21 | 0.0158 (16) | 0.0145 (15) | 0.0198 (16) | 0.0004 (13) | 0.0035 (15) | −0.0009 (16) |
C22 | 0.0128 (18) | 0.017 (2) | 0.019 (2) | −0.0004 (16) | −0.0015 (15) | 0.0014 (16) |
N23 | 0.0147 (16) | 0.0183 (17) | 0.019 (2) | −0.0007 (15) | −0.0001 (16) | −0.0003 (18) |
C24 | 0.023 (2) | 0.012 (2) | 0.026 (2) | −0.0004 (19) | 0.0033 (19) | 0.006 (2) |
C25 | 0.025 (2) | 0.021 (2) | 0.029 (3) | 0.005 (2) | −0.001 (2) | 0.009 (2) |
C26 | 0.0142 (18) | 0.027 (2) | 0.025 (2) | 0.0006 (18) | −0.0044 (19) | 0.001 (2) |
N1 | 0.0235 (18) | 0.0108 (18) | 0.025 (2) | −0.0009 (15) | 0.0005 (17) | 0.0017 (17) |
O11 | 0.0208 (15) | 0.0185 (15) | 0.0230 (17) | 0.0018 (12) | −0.0033 (13) | −0.0060 (13) |
O12 | 0.0198 (17) | 0.039 (2) | 0.0335 (18) | 0.0022 (16) | 0.0010 (15) | 0.0107 (17) |
O13 | 0.042 (2) | 0.033 (2) | 0.0215 (18) | 0.0011 (15) | 0.0015 (14) | −0.0079 (17) |
N2 | 0.0239 (19) | 0.0143 (16) | 0.026 (2) | 0.0010 (16) | 0.0042 (17) | 0.0040 (16) |
O21 | 0.0192 (17) | 0.0228 (18) | 0.0220 (17) | 0.0026 (11) | 0.0023 (15) | −0.0069 (13) |
O22 | 0.023 (2) | 0.031 (2) | 0.031 (2) | −0.0001 (12) | −0.0038 (15) | −0.0002 (16) |
O23 | 0.0351 (19) | 0.0238 (17) | 0.029 (2) | 0.0092 (15) | 0.0119 (16) | −0.0001 (15) |
Geometric parameters (Å, º) top
Cu1—O21 | 1.973 (3) | N21—C22 | 1.336 (6) |
Cu1—O11 | 1.987 (3) | C22—N23 | 1.326 (5) |
Cu1—N21 | 2.025 (4) | C22—H22A | 0.9500 |
Cu1—N11 | 2.033 (4) | N23—C24 | 1.341 (6) |
Cu1—N23i | 2.291 (4) | N23—Cu1ii | 2.291 (4) |
N11—C12 | 1.330 (6) | C24—C25 | 1.364 (7) |
N11—C16 | 1.334 (6) | C24—H24A | 0.9500 |
C12—N13 | 1.330 (7) | C25—C26 | 1.381 (7) |
C12—H12A | 0.9500 | C25—H25A | 0.9500 |
N13—C14 | 1.322 (7) | C26—H26A | 0.9500 |
C14—C15 | 1.360 (7) | N1—O13 | 1.224 (6) |
C14—H14A | 0.9500 | N1—O12 | 1.229 (5) |
C15—C16 | 1.388 (6) | N1—O11 | 1.298 (5) |
C15—H15A | 0.9500 | N2—O23 | 1.219 (5) |
C16—H16A | 0.9500 | N2—O22 | 1.229 (6) |
N21—C26 | 1.332 (6) | N2—O21 | 1.299 (5) |
| | | |
O21—Cu1—O11 | 176.23 (14) | C26—N21—C22 | 117.4 (4) |
O21—Cu1—N21 | 89.88 (14) | C26—N21—Cu1 | 123.8 (3) |
O11—Cu1—N21 | 91.49 (14) | C22—N21—Cu1 | 118.7 (3) |
O21—Cu1—N11 | 91.42 (15) | N23—C22—N21 | 125.2 (4) |
O11—Cu1—N11 | 88.14 (15) | N23—C22—H22A | 117.4 |
N21—Cu1—N11 | 165.34 (15) | N21—C22—H22A | 117.4 |
O21—Cu1—N23i | 90.79 (15) | C22—N23—C24 | 116.8 (4) |
O11—Cu1—N23i | 85.50 (14) | C22—N23—Cu1ii | 120.6 (3) |
N21—Cu1—N23i | 100.63 (14) | C24—N23—Cu1ii | 122.6 (3) |
N11—Cu1—N23i | 93.96 (15) | N23—C24—C25 | 121.7 (4) |
C12—N11—C16 | 117.0 (4) | N23—C24—H24A | 119.1 |
C12—N11—Cu1 | 121.6 (3) | C25—C24—H24A | 119.1 |
C16—N11—Cu1 | 121.4 (3) | C24—C25—C26 | 117.8 (4) |
N13—C12—N11 | 126.1 (5) | C24—C25—H25A | 121.1 |
N13—C12—H12A | 117.0 | C26—C25—H25A | 121.1 |
N11—C12—H12A | 117.0 | N21—C26—C25 | 120.9 (4) |
C14—N13—C12 | 116.2 (4) | N21—C26—H26A | 119.5 |
N13—C14—C15 | 122.5 (5) | C25—C26—H26A | 119.5 |
N13—C14—H14A | 118.7 | O13—N1—O12 | 124.4 (4) |
C15—C14—H14A | 118.7 | O13—N1—O11 | 117.4 (4) |
C14—C15—C16 | 117.8 (4) | O12—N1—O11 | 118.2 (4) |
C14—C15—H15A | 121.1 | N1—O11—Cu1 | 112.6 (3) |
C16—C15—H15A | 121.1 | O23—N2—O22 | 123.9 (4) |
N11—C16—C15 | 120.5 (4) | O23—N2—O21 | 118.3 (4) |
N11—C16—H16A | 119.8 | O22—N2—O21 | 117.8 (4) |
C15—C16—H16A | 119.8 | N2—O21—Cu1 | 114.3 (3) |
Symmetry codes: (i) x+1/2, −y+1, z; (ii) x−1/2, −y+1, z. |
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