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The crystal structure of methyl α-D-mannopyranosyl-(1→3)-2-O-acetyl-β-D-mannopyranoside monohydrate, C15H26O12·H2O, (II), has been determined and the structural parameters for its constituent α-D-mannopyranosyl residue compared with those for methyl α-D-mannopyranoside. Mono-O-acetylation appears to promote the crystallization of (II), inferred from the difficulty in crystallizing methyl α-D-mannopyranosyl-(1→3)-β-D-mannopyranoside despite repeated attempts. The conformational properties of the O-acetyl side chain in (II) are similar to those observed in recent studies of peracetylated mannose-containing oligosaccharides, having a preferred geometry in which the C2—H2 bond eclipses the C=O bond of the acetyl group. The C2—O2 bond in (II) elongates by ∼0.02 Å upon O-acetylation. The phi (φ) and psi (ψ) torsion angles that dictate the conformation of the internal O-glycosidic linkage in (II) are similar to those determined recently in aqueous solution by NMR spectroscopy for unacetylated (II) using the statistical program MA′AT, with a greater disparity found for ψ (Δ = ∼16°) than for φ (Δ = ∼6°).
Supporting information
CCDC reference: 1908451
Data collection: APEX3 (Bruker, 2015); cell refinement: SAINT (Bruker, 2015); data reduction: SAINT (Bruker, 2015); program(s) used to solve structure: SHELXT2014 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: publCIF (Westrip, 2010) and PLATON (Spek, 2009).
Methyl
α-
D-mannopyranosyl-(1-3)-2-
O-Acetyl-
β-
D-mannopyranoside
monohydrate
top
Crystal data top
C15H26O12·H2O | Dx = 1.472 Mg m−3 |
Mr = 416.37 | Cu Kα radiation, λ = 1.54184 Å |
Hexagonal, P65 | Cell parameters from 9714 reflections |
a = 7.8682 (3) Å | θ = 6.5–72.2° |
c = 52.555 (3) Å | µ = 1.13 mm−1 |
V = 2817.7 (3) Å3 | T = 120 K |
Z = 6 | Block, colourless |
F(000) = 1332 | 0.30 × 0.23 × 0.14 mm |
Data collection top
Bruker APEXII diffractometer | 3719 independent reflections |
Radiation source: Incoatec micro-focus | 3719 reflections with I > 2σ(I) |
Detector resolution: 8.33 pixels mm-1 | Rint = 0.021 |
combination of ω and φ–scans | θmax = 72.6°, θmin = 5.1° |
Absorption correction: numerical (SADABS; Krause et al., 2015) | h = −9→9 |
Tmin = 0.816, Tmax = 0.907 | k = −9→9 |
37134 measured reflections | l = −64→64 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.022 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.058 | w = 1/[σ2(Fo2) + (0.0341P)2 + 0.5721P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.001 |
3719 reflections | Δρmax = 0.20 e Å−3 |
287 parameters | Δρmin = −0.16 e Å−3 |
1 restraint | Absolute structure: Flack x determined using 1835 quotients [(I+)-(I-)]/[(I+)+(I-)]
(Parsons et al., 2013) |
Primary atom site location: dual | Absolute structure parameter: 0.028 (14) |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 1.05807 (18) | 1.00809 (19) | 0.54669 (3) | 0.0230 (3) | |
O2 | 0.76178 (17) | 0.62776 (18) | 0.54504 (2) | 0.0167 (2) | |
O4 | 0.31695 (19) | 0.68238 (19) | 0.50809 (2) | 0.0177 (3) | |
H4O | 0.216 (4) | 0.636 (4) | 0.5168 (5) | 0.030 (7)* | |
O5 | 0.75643 (17) | 0.97678 (18) | 0.54738 (2) | 0.0166 (3) | |
O6 | 0.3921 (3) | 0.8446 (3) | 0.57154 (3) | 0.0380 (4) | |
H6O | 0.338 (4) | 0.879 (5) | 0.5823 (6) | 0.039 (8)* | |
O7 | 0.9678 (2) | 0.5185 (2) | 0.53482 (3) | 0.0325 (3) | |
C1 | 0.8953 (2) | 0.9597 (3) | 0.53176 (3) | 0.0173 (3) | |
H1 | 0.932708 | 1.050903 | 0.516908 | 0.021* | |
C2 | 0.8101 (2) | 0.7488 (2) | 0.52257 (3) | 0.0157 (3) | |
H2 | 0.906976 | 0.734740 | 0.511761 | 0.019* | |
C3 | 0.6224 (3) | 0.6899 (2) | 0.50786 (3) | 0.0144 (3) | |
H3 | 0.655673 | 0.773981 | 0.492323 | 0.017* | |
C4 | 0.4795 (2) | 0.7205 (2) | 0.52397 (3) | 0.0142 (3) | |
H4 | 0.433840 | 0.628109 | 0.538762 | 0.017* | |
C5 | 0.5825 (2) | 0.9338 (2) | 0.53345 (3) | 0.0152 (3) | |
H5 | 0.621069 | 1.023095 | 0.518385 | 0.018* | |
C6 | 0.4526 (3) | 0.9744 (3) | 0.55047 (3) | 0.0191 (3) | |
H6A | 0.525433 | 1.111930 | 0.556524 | 0.023* | |
H6B | 0.336352 | 0.955685 | 0.540846 | 0.023* | |
C7 | 1.1834 (3) | 1.2161 (3) | 0.54980 (4) | 0.0271 (4) | |
H7A | 1.280757 | 1.241343 | 0.563074 | 0.041* | |
H7B | 1.104304 | 1.275216 | 0.554727 | 0.041* | |
H7C | 1.250786 | 1.273739 | 0.533717 | 0.041* | |
C8 | 0.8604 (2) | 0.5337 (3) | 0.54988 (4) | 0.0182 (3) | |
C9 | 0.8169 (3) | 0.4518 (3) | 0.57627 (4) | 0.0239 (4) | |
H9A | 0.852907 | 0.349586 | 0.577821 | 0.036* | |
H9B | 0.676564 | 0.395113 | 0.579779 | 0.036* | |
H9C | 0.892892 | 0.556861 | 0.588507 | 0.036* | |
O1' | 0.53187 (18) | 0.48920 (18) | 0.50014 (2) | 0.0163 (2) | |
O2' | 0.27523 (19) | 0.22351 (19) | 0.44429 (2) | 0.0177 (3) | |
H2'O | 0.172 (4) | 0.119 (4) | 0.4428 (5) | 0.032 (7)* | |
O3' | 0.27615 (19) | −0.08114 (18) | 0.47211 (3) | 0.0212 (3) | |
H3'O | 0.301 (3) | −0.151 (4) | 0.4816 (5) | 0.018 (5)* | |
O4' | 0.6920 (2) | 0.05956 (19) | 0.46951 (2) | 0.0216 (3) | |
H4'O | 0.753 (5) | 0.048 (5) | 0.4571 (7) | 0.047 (8)* | |
O5' | 0.66923 (17) | 0.51175 (17) | 0.46008 (2) | 0.0148 (2) | |
O6' | 0.8987 (2) | 0.4274 (2) | 0.42393 (3) | 0.0251 (3) | |
H6'O | 0.816 (5) | 0.456 (5) | 0.4197 (6) | 0.044 (8)* | |
C1' | 0.4947 (2) | 0.4615 (2) | 0.47384 (3) | 0.0146 (3) | |
H1' | 0.441294 | 0.546391 | 0.467925 | 0.017* | |
C2' | 0.3387 (2) | 0.2467 (2) | 0.47017 (3) | 0.0158 (3) | |
H2' | 0.224819 | 0.214483 | 0.481598 | 0.019* | |
C3' | 0.4230 (3) | 0.1157 (2) | 0.47688 (3) | 0.0163 (3) | |
H3' | 0.455995 | 0.130532 | 0.495416 | 0.020* | |
C4' | 0.6097 (3) | 0.1767 (2) | 0.46164 (3) | 0.0162 (3) | |
H4' | 0.577373 | 0.155603 | 0.443093 | 0.019* | |
C5' | 0.7577 (2) | 0.3936 (2) | 0.46646 (3) | 0.0152 (3) | |
H5' | 0.795964 | 0.412690 | 0.484833 | 0.018* | |
C6' | 0.9407 (3) | 0.4712 (3) | 0.45016 (4) | 0.0202 (4) | |
H6'A | 1.019956 | 0.615329 | 0.452287 | 0.024* | |
H6'B | 1.020419 | 0.413976 | 0.456212 | 0.024* | |
O1W | −0.1202 (2) | −0.1001 (2) | 0.43620 (3) | 0.0220 (3) | |
H1WA | −0.133 (4) | −0.130 (4) | 0.4204 (7) | 0.041 (8)* | |
H1WB | −0.174 (5) | −0.207 (5) | 0.4430 (6) | 0.043 (8)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0166 (6) | 0.0188 (6) | 0.0343 (7) | 0.0093 (5) | −0.0071 (5) | −0.0058 (5) |
O2 | 0.0181 (6) | 0.0186 (6) | 0.0172 (6) | 0.0120 (5) | 0.0012 (5) | 0.0010 (5) |
O4 | 0.0141 (6) | 0.0217 (6) | 0.0157 (6) | 0.0076 (5) | −0.0007 (5) | 0.0009 (5) |
O5 | 0.0170 (6) | 0.0193 (6) | 0.0161 (6) | 0.0110 (5) | −0.0027 (5) | −0.0041 (5) |
O6 | 0.0642 (11) | 0.0549 (10) | 0.0193 (7) | 0.0481 (10) | 0.0177 (7) | 0.0105 (7) |
O7 | 0.0292 (7) | 0.0345 (8) | 0.0446 (9) | 0.0241 (7) | 0.0147 (7) | 0.0118 (7) |
C1 | 0.0140 (7) | 0.0173 (8) | 0.0202 (8) | 0.0075 (6) | 0.0004 (6) | −0.0010 (6) |
C2 | 0.0170 (8) | 0.0160 (8) | 0.0160 (8) | 0.0098 (7) | 0.0039 (6) | 0.0012 (6) |
C3 | 0.0172 (8) | 0.0127 (7) | 0.0126 (7) | 0.0070 (6) | 0.0015 (6) | −0.0003 (6) |
C4 | 0.0146 (7) | 0.0161 (8) | 0.0115 (7) | 0.0074 (6) | −0.0006 (6) | 0.0002 (6) |
C5 | 0.0156 (7) | 0.0165 (8) | 0.0154 (8) | 0.0095 (6) | −0.0018 (6) | −0.0004 (6) |
C6 | 0.0225 (9) | 0.0220 (8) | 0.0175 (8) | 0.0146 (7) | 0.0003 (6) | −0.0027 (7) |
C7 | 0.0165 (9) | 0.0195 (9) | 0.0417 (12) | 0.0063 (7) | −0.0015 (8) | −0.0094 (8) |
C8 | 0.0110 (7) | 0.0158 (8) | 0.0270 (9) | 0.0061 (6) | −0.0024 (6) | −0.0032 (7) |
C9 | 0.0276 (9) | 0.0255 (9) | 0.0241 (10) | 0.0174 (8) | −0.0072 (8) | −0.0029 (7) |
O1' | 0.0219 (6) | 0.0141 (6) | 0.0119 (6) | 0.0083 (5) | 0.0007 (5) | −0.0017 (4) |
O2' | 0.0167 (6) | 0.0173 (6) | 0.0134 (6) | 0.0044 (5) | −0.0020 (4) | 0.0017 (4) |
O3' | 0.0218 (6) | 0.0135 (6) | 0.0222 (6) | 0.0043 (5) | −0.0049 (5) | 0.0018 (5) |
O4' | 0.0291 (7) | 0.0228 (6) | 0.0201 (6) | 0.0183 (6) | 0.0052 (5) | 0.0039 (5) |
O5' | 0.0168 (6) | 0.0134 (5) | 0.0135 (5) | 0.0070 (5) | 0.0026 (4) | 0.0007 (4) |
O6' | 0.0249 (7) | 0.0293 (7) | 0.0202 (7) | 0.0130 (6) | 0.0075 (5) | −0.0021 (5) |
C1' | 0.0165 (8) | 0.0151 (7) | 0.0121 (7) | 0.0079 (6) | 0.0021 (6) | 0.0007 (6) |
C2' | 0.0151 (8) | 0.0173 (8) | 0.0119 (7) | 0.0059 (7) | 0.0011 (6) | 0.0008 (6) |
C3' | 0.0173 (8) | 0.0131 (8) | 0.0147 (8) | 0.0048 (7) | −0.0008 (6) | −0.0002 (6) |
C4' | 0.0203 (8) | 0.0150 (8) | 0.0142 (7) | 0.0096 (7) | −0.0004 (6) | −0.0006 (6) |
C5' | 0.0172 (8) | 0.0156 (8) | 0.0139 (8) | 0.0090 (7) | −0.0014 (6) | −0.0024 (6) |
C6' | 0.0175 (8) | 0.0195 (8) | 0.0219 (9) | 0.0081 (7) | 0.0018 (7) | −0.0013 (7) |
O1W | 0.0264 (7) | 0.0186 (7) | 0.0197 (7) | 0.0102 (6) | −0.0002 (5) | 0.0010 (5) |
Geometric parameters (Å, º) top
O1—C1 | 1.383 (2) | C9—H9A | 0.9800 |
O1—C7 | 1.437 (2) | C9—H9B | 0.9800 |
O2—C8 | 1.337 (2) | C9—H9C | 0.9800 |
O2—C2 | 1.444 (2) | O1'—C1' | 1.407 (2) |
O4—C4 | 1.428 (2) | O2'—C2' | 1.429 (2) |
O4—H4O | 0.83 (3) | O2'—H2'O | 0.82 (3) |
O5—C1 | 1.426 (2) | O3'—C3' | 1.417 (2) |
O5—C5 | 1.435 (2) | O3'—H3'O | 0.84 (3) |
O6—C6 | 1.417 (2) | O4'—C4' | 1.428 (2) |
O6—H6O | 0.83 (3) | O4'—H4'O | 0.84 (4) |
O7—C8 | 1.207 (2) | O5'—C1' | 1.422 (2) |
C1—C2 | 1.524 (2) | O5'—C5' | 1.452 (2) |
C1—H1 | 1.0000 | O6'—C6' | 1.419 (2) |
C2—C3 | 1.520 (2) | O6'—H6'O | 0.82 (4) |
C2—H2 | 1.0000 | C1'—C2' | 1.525 (2) |
C3—O1' | 1.429 (2) | C1'—H1' | 1.0000 |
C3—C4 | 1.520 (2) | C2'—C3' | 1.521 (2) |
C3—H3 | 1.0000 | C2'—H2' | 1.0000 |
C4—C5 | 1.537 (2) | C3'—C4' | 1.524 (2) |
C4—H4 | 1.0000 | C3'—H3' | 1.0000 |
C5—C6 | 1.508 (2) | C4'—C5' | 1.531 (2) |
C5—H5 | 1.0000 | C4'—H4' | 1.0000 |
C6—H6A | 0.9900 | C5'—C6' | 1.517 (2) |
C6—H6B | 0.9900 | C5'—H5' | 1.0000 |
C7—H7A | 0.9800 | C6'—H6'A | 0.9900 |
C7—H7B | 0.9800 | C6'—H6'B | 0.9900 |
C7—H7C | 0.9800 | O1W—H1WA | 0.86 (3) |
C8—C9 | 1.495 (3) | O1W—H1WB | 0.81 (4) |
| | | |
C1—O1—C7 | 113.08 (14) | C8—C9—H9A | 109.5 |
C8—O2—C2 | 119.09 (13) | C8—C9—H9B | 109.5 |
C4—O4—H4O | 109.2 (18) | H9A—C9—H9B | 109.5 |
C1—O5—C5 | 111.68 (12) | C8—C9—H9C | 109.5 |
C6—O6—H6O | 110 (2) | H9A—C9—H9C | 109.5 |
O1—C1—O5 | 107.16 (14) | H9B—C9—H9C | 109.5 |
O1—C1—C2 | 108.81 (14) | C1'—O1'—C3 | 113.60 (13) |
O5—C1—C2 | 110.15 (14) | C2'—O2'—H2'O | 109 (2) |
O1—C1—H1 | 110.2 | C3'—O3'—H3'O | 106.5 (17) |
O5—C1—H1 | 110.2 | C4'—O4'—H4'O | 108 (2) |
C2—C1—H1 | 110.2 | C1'—O5'—C5' | 114.20 (12) |
O2—C2—C3 | 108.63 (13) | C6'—O6'—H6'O | 108 (2) |
O2—C2—C1 | 106.63 (13) | O1'—C1'—O5' | 111.09 (13) |
C3—C2—C1 | 108.94 (14) | O1'—C1'—C2' | 106.59 (13) |
O2—C2—H2 | 110.8 | O5'—C1'—C2' | 111.97 (13) |
C3—C2—H2 | 110.8 | O1'—C1'—H1' | 109.0 |
C1—C2—H2 | 110.8 | O5'—C1'—H1' | 109.0 |
O1'—C3—C4 | 109.51 (14) | C2'—C1'—H1' | 109.0 |
O1'—C3—C2 | 110.66 (13) | O2'—C2'—C3' | 112.14 (14) |
C4—C3—C2 | 110.58 (13) | O2'—C2'—C1' | 107.36 (13) |
O1'—C3—H3 | 108.7 | C3'—C2'—C1' | 109.84 (14) |
C4—C3—H3 | 108.7 | O2'—C2'—H2' | 109.1 |
C2—C3—H3 | 108.7 | C3'—C2'—H2' | 109.1 |
O4—C4—C3 | 107.27 (13) | C1'—C2'—H2' | 109.1 |
O4—C4—C5 | 110.30 (13) | O3'—C3'—C2' | 107.83 (14) |
C3—C4—C5 | 108.98 (13) | O3'—C3'—C4' | 112.47 (14) |
O4—C4—H4 | 110.1 | C2'—C3'—C4' | 110.07 (14) |
C3—C4—H4 | 110.1 | O3'—C3'—H3' | 108.8 |
C5—C4—H4 | 110.1 | C2'—C3'—H3' | 108.8 |
O5—C5—C6 | 108.35 (14) | C4'—C3'—H3' | 108.8 |
O5—C5—C4 | 110.08 (13) | O4'—C4'—C3' | 108.75 (14) |
C6—C5—C4 | 112.36 (14) | O4'—C4'—C5' | 109.48 (14) |
O5—C5—H5 | 108.7 | C3'—C4'—C5' | 109.90 (14) |
C6—C5—H5 | 108.7 | O4'—C4'—H4' | 109.6 |
C4—C5—H5 | 108.7 | C3'—C4'—H4' | 109.6 |
O6—C6—C5 | 109.25 (14) | C5'—C4'—H4' | 109.6 |
O6—C6—H6A | 109.8 | O5'—C5'—C6' | 105.90 (14) |
C5—C6—H6A | 109.8 | O5'—C5'—C4' | 109.51 (14) |
O6—C6—H6B | 109.8 | C6'—C5'—C4' | 113.28 (14) |
C5—C6—H6B | 109.8 | O5'—C5'—H5' | 109.4 |
H6A—C6—H6B | 108.3 | C6'—C5'—H5' | 109.4 |
O1—C7—H7A | 109.5 | C4'—C5'—H5' | 109.4 |
O1—C7—H7B | 109.5 | O6'—C6'—C5' | 113.09 (15) |
H7A—C7—H7B | 109.5 | O6'—C6'—H6'A | 109.0 |
O1—C7—H7C | 109.5 | C5'—C6'—H6'A | 109.0 |
H7A—C7—H7C | 109.5 | O6'—C6'—H6'B | 109.0 |
H7B—C7—H7C | 109.5 | C5'—C6'—H6'B | 109.0 |
O7—C8—O2 | 123.98 (18) | H6'A—C6'—H6'B | 107.8 |
O7—C8—C9 | 125.89 (17) | H1WA—O1W—H1WB | 102 (3) |
O2—C8—C9 | 110.13 (15) | | |
| | | |
C7—O1—C1—O5 | −79.07 (18) | C2—O2—C8—C9 | 168.49 (15) |
C7—O1—C1—C2 | 161.85 (15) | C4—C3—O1'—C1' | 112.13 (15) |
C5—O5—C1—O1 | 178.65 (13) | C2—C3—O1'—C1' | −125.72 (15) |
C5—O5—C1—C2 | −63.13 (18) | C3—O1'—C1'—O5' | 77.51 (16) |
C8—O2—C2—C3 | 128.63 (15) | C3—O1'—C1'—C2' | −160.26 (13) |
C8—O2—C2—C1 | −114.09 (16) | C5'—O5'—C1'—O1' | 61.63 (17) |
O1—C1—C2—O2 | 58.60 (17) | C5'—O5'—C1'—C2' | −57.43 (18) |
O5—C1—C2—O2 | −58.59 (17) | O1'—C1'—C2'—O2' | 170.46 (13) |
O1—C1—C2—C3 | 175.67 (14) | O5'—C1'—C2'—O2' | −67.87 (17) |
O5—C1—C2—C3 | 58.48 (18) | O1'—C1'—C2'—C3' | −67.36 (16) |
O2—C2—C3—O1' | −60.93 (16) | O5'—C1'—C2'—C3' | 54.31 (18) |
C1—C2—C3—O1' | −176.72 (13) | O2'—C2'—C3'—O3' | −58.14 (17) |
O2—C2—C3—C4 | 60.60 (17) | C1'—C2'—C3'—O3' | −177.43 (13) |
C1—C2—C3—C4 | −55.19 (17) | O2'—C2'—C3'—C4' | 64.88 (18) |
O1'—C3—C4—O4 | −63.88 (16) | C1'—C2'—C3'—C4' | −54.41 (18) |
C2—C3—C4—O4 | 173.92 (13) | O3'—C3'—C4'—O4' | −63.40 (18) |
O1'—C3—C4—C5 | 176.70 (13) | C2'—C3'—C4'—O4' | 176.35 (13) |
C2—C3—C4—C5 | 54.50 (17) | O3'—C3'—C4'—C5' | 176.78 (13) |
C1—O5—C5—C6 | −174.48 (14) | C2'—C3'—C4'—C5' | 56.52 (18) |
C1—O5—C5—C4 | 62.30 (17) | C1'—O5'—C5'—C6' | −179.33 (14) |
O4—C4—C5—O5 | −174.52 (13) | C1'—O5'—C5'—C4' | 58.19 (17) |
C3—C4—C5—O5 | −57.00 (17) | O4'—C4'—C5'—O5' | −176.17 (13) |
O4—C4—C5—C6 | 64.63 (18) | C3'—C4'—C5'—O5' | −56.79 (18) |
C3—C4—C5—C6 | −177.85 (14) | O4'—C4'—C5'—C6' | 65.87 (19) |
O5—C5—C6—O6 | −63.86 (19) | C3'—C4'—C5'—C6' | −174.75 (15) |
C4—C5—C6—O6 | 58.0 (2) | O5'—C5'—C6'—O6' | −69.90 (18) |
C2—O2—C8—O7 | −11.7 (3) | C4'—C5'—C6'—O6' | 50.1 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O7i | 0.83 (3) | 1.94 (3) | 2.764 (2) | 175 (3) |
O6—H6O···O2′ii | 0.83 (3) | 1.96 (3) | 2.793 (2) | 173 (3) |
O2′—H2′O···O1W | 0.82 (3) | 2.10 (3) | 2.902 (2) | 165 (3) |
O3′—H3′O···O4iii | 0.84 (3) | 1.96 (3) | 2.7820 (19) | 168 (2) |
O4′—H4′O···O1Wiv | 0.84 (4) | 2.17 (3) | 2.9463 (19) | 153 (3) |
O6′—H6′O···O6v | 0.82 (4) | 2.06 (4) | 2.819 (2) | 153 (3) |
O1W—H1WA···O1vi | 0.86 (3) | 2.58 (3) | 3.224 (2) | 133 (3) |
O1W—H1WA···O5vi | 0.86 (3) | 2.23 (3) | 3.0838 (18) | 170 (3) |
O1W—H1WB···O5′vii | 0.81 (4) | 2.12 (4) | 2.9303 (19) | 177 (3) |
Symmetry codes: (i) x−1, y, z; (ii) y, −x+y+1, z+1/6; (iii) x, y−1, z; (iv) x+1, y, z; (v) x−y+1, x, z−1/6; (vi) x−y, x−1, z−1/6; (vii) x−1, y−1, z. |
Selected bond lengths, bond angles, and torsion angles in methyl
α-D-mannopyranosyl-(1→3)-2-O-acetyl-β-D-mannopyranoside monohydrate, (II), and methyl
α-D-mannopyranoside, (III) topStructural parameter | | Compound/residue | |
| (II) (R1)a | (II) (R2)d | (III)c |
Bond lengths (Å) | | | |
C1—C2 | 1.524 | 1.525 | 1.524 |
C2—C3 | 1.520 | 1.520 | 1.529 |
C3—C4 | 1.520 | 1.525 | 1.519 |
C4—C5 | 1.537 | 1.531 | 1.529 |
C5—C6 | 1.508 | 1.517 | 1.518 |
C1—O1 | 1.383 | 1.407 | 1.400 |
C1—O5 | 1.426 | 1.422 | 1.415 |
C2—O2 | 1.444 | 1.429 | 1.415 |
C3—O1' | 1.429 | | |
C3—O3 | | 1.417 | 1.422 |
C4—O4 | 1.428 | 1.427 | 1.430 |
C5—O5 | 1.435 | 1.452 | 1.435 |
C6—O6 | 1.418 | 1.419 | 1.413 |
O1—CH3 | 1.437 | | 1.423 |
| | | |
Bond angles (°) | | | |
C5—O5—C1 | 111.68 | | |
C5'—O5'—C1' | 114.21 | | 114.29 |
C1'—O1'—C3 | 113.60 | | |
C1—O1—CH3 | 113.07 | | 113.91 |
C2—O2—Ccarb | 119.10 | | |
O2—Ccar—CMe | 110.11 | | |
O2—Ccar—Ocar | 123.98 | | |
Ocar—Ccar—CMe | 125.91 | | |
| | | |
Bond torsions (°) | | | |
C1—C2—C3—C4 | -55.19 | | |
C1—O5—C5—C4 | 62.31 | | |
C1'—C2'—C3'—C4' | -54.43 | | -53.37 |
C1'—O5'—C5'—C4' | 58.17 | | 59.13 |
C2—C1—O1—CH3 (φ) | 161.86 | | |
O5—C1—O1—CH3 (φ) | -79.07 | | |
H1—C1—O1—CH3 (φ) | 40.93 | | |
C2'—C1'—O1'—C3 (φ') | -160.30 | | -177.69 |
O5'—C1'—O1'—C3 (φ') | 77.49 | | 60.51 |
H1'—C1'—O1'—C3 (φ') | -42.68 | | -56.22 |
C1'—O1'—C3—C2 (ψ') | -125.73 | | |
C1'—O1'—C3—C4 (ψ') | 112.12 | | |
C1'—O1'—C3—H3 (ψ') | -6.43 | | |
O5—C5—C6—O6 | -63.82 (gg) | | |
O5'—C5'—C6'—O6' | -69.88 (gg) | | -65.10 (gg) |
C1—C2—O2—Ccar | -114.10 | | |
H2—C2—O2—Ccar | 6.63 | | |
C3—C2—O2—Ccar | 128.62 | | |
C2—O2—Ccar—CMe | 168.48 | | |
C2—O2—Ccar—Ocar | -11.69 | | |
Notes: (a) R1 and R2 denote the βMan and αMan residues in disaccharide
(II)), respectively; see structure in text. The primed atoms in R2 are
shown as unprimed for the bond lengths to simplify the table. (b)
Ccar is the carbonyl C atom of the 2-O-acetyl side chain of
(II), Ocar is the carbonyl O atom of the side chain and CMe
is the methyl C atom of the side chain. (c) Bond angles and torsions in
(III) are listed in some cases with primed atoms to allow visual
comparison with the αMan residue (R2) of (II); data were taken from
Jeffrey et al. (1977). (d) Bonds are shown with
unprimed atoms in residue R2 of (II) to simplify structural
comparisons in the table. gg = gauche–gauche. |
Cremer–Pople puckering parameters for aldohexopyranosyl residues in
(II) and (III) topCompound/residue | θ (°) | φ (°) | Q (Å) | q2 (Å) | q3 (Å) |
(II): βMan (R1) | 2.00 (18) | 16 (5) | 0.5893 (18) | 0.0208 (18) | 0.5889 (18) |
(II): αMan (R2) | 2.78 (18) | 230 (2) | 0.5659 (18) | 0.0303 (18) | 0.5653 (18) |
(III): αMana | 1.2 | 286 | 0.557 | 0.0118 | 0.5569 |
Note: (a) errors were not reported for structure (III);
data were taken from Jeffrey et al. (1977). |
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