Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229614008936/sf3229sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2053229614008936/sf3229Isup2.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229614008936/sf3229Isup3.cml |
CCDC reference: 998427
Seven-membered nitrogen-containing heterocyclic compounds, such as 1,4-diazepines, are important structural units in drug discovery due to their wide spectrum of biological and pharmacological properties (Sternbach, 1971), including antimicrobial (Parmar et al., 2012), anti-HIV (Fader et al., 2011, 2013) and anticancer activity (Smith et al., 2006), while compounds such as pyrimido[1,4]diazepines have shown important antitumour activity (Insuasty, Orozco, Lizarazo et al., 2008; Insuasty, Orozco, Quiroga et al., 2008; Insuasty et al., 2010; Deng et al., 2013). Continuing our work on the synthesis of diverse pyrimido[4,5-b][1,4]diazepines from α,β-unsaturated carbonyl (chalcone-type) derivatives, in order to explore their antitumour activities, we have now prepared (8RS)-4-amino-6-(4-chlorophenyl)-8-(2,4-dichlorothiazol-5-yl)-8,9-dihydro-7H-pyrimido[4,5-b][1,4]diazepine, whose structure is reported here as its monosolvate, (I) (Fig. 1), with N,N-dimethylformamide (DMF).
The fused heterocyclic component of (I) was prepared by the thermal reaction of 4,5,6-triaminopyrimidine as its dihydrochloride salt, (II), and the chalcone derivative 1-(4-chlorophenyl)-3-(2,4-dichlorothiazol-5-yl)propan-1-one, (III) (see scheme), which had itself been prepared by the base-catalysed condensation reaction between 4-chloroacetophenone and 2,4-dichlorothiazole-5-carbaldehyde; crystallization from DMF yielded monosolvate (I).
The purposes of the present study were threefold: firstly, to establish the regiochemistry of the reaction between (II) and (III) to form the title pyrimidodiazepine, rather than the alternative isomeric form (IV) (see scheme); secondly, to compare the fused pyrimidine ring in (I) with other unfused but heavily substituted pyrimidines; and thirdly, to compare the supramolecular assembly in (I) with that in simpler aminopyrimidines.
For the synthesis of (RS)-4-amino-6-(4-chlorophenyl)-8-(2,4-dichlorothiazol-5-yl)-8,9-dihydro-7H-pyrimido[4,5-b][1,4]diazepine, equimolar quantities (0.5 mmol of each) of 4,5,6-triaminopyrimidine dihydrochloride, (II) (see scheme), and chalcone (III) were dissolved in methanol (10 ml) and the mixture was heated under reflux for 24 h. The resulting solution was allowed to cool to ambient temperature, and it was then neutralized with aqueous ammonia solution (6 M). The neutralized mixture was then extracted exhaustively with dichloromethane, the combined extracts were dried and the solvent was removed under reduced pressure. The compound was purified by column chromatography on silica using dichloromethane–methanol (30/1 v/v) as eluent (yield 68%; m.p. 511–513 K). MS (EI, 70 eV) m/z, %: 428/426/424 (10/29/30, M+), 391/389 (58/80), 247/245 (31/100), 218 (15), 149 (16). Analysis, found: C 45.2, H 2.8, N 19.9%; C16H11Cl3N6S requires: C 45.1, H 2.6, N 19.7%. Slow evaporation, at ambient temperature and in air, of a solution in DMF gave pale-yellow crystals of the title solvate, (I), suitable for single-crystal X-ray diffraction.
Crystal data, data collection and structure refinement details are summarized in Table 1. All H atoms were located in difference maps and then treated as riding atoms. C-bound H atoms were treated as riding in geometrically idealized positions, with C—H = 0.95 (aromatic, heteroaromatic and formyl), 0.98 (CH3), 0.99 (CH2) or 1.00 Å (aliphatic C—H), and with Uiso(H) = kUeq(C), where k = 1.5 for the methyl groups, which were permitted to rotate but not to tilt, and 1.2 for all other C-bound H atoms. N-bound H atoms were permitted to ride at the positions located in difference maps, with Uiso(H) = 1.2Ueq(N), giving the N—H distances shown in Table 2. Six low-angle reflections (011, 101, 110, 111, 111 and 111), which had been totally or partially attenuated by the beam stop, were omitted from the final refinements. When the common site-occupancy factor for the atoms of the DMF component was permitted to vary, the refined value was 1.004 (4), confirming the full occupancy of the solvent site.
The heterocyclic component of (I) contains a stereogenic centre at atom C8, and the reference molecule was selected to be one having the R configuration at atom C8. However, the centrosymmetric space group confirms that the compound crystallizes as a racemic mixture. In addition, the asymmetric unit was selected such that the two molecular components were linked within the asymmetric unit by the shorter of the two C—H···O hydrogen bonds (Table 2).
The diazepine ring of (I) adopts a conformation close to the twist-boat form (Evans & Boeyens, 1989), with ring-puckering parameters (Cremer & Pople, 1975) calculated for the atom sequence N5–C4a–C9a–N9–C8–C7–C6 of Q = 0.739 (2) Å, ϕ2 = 12.8 (2)° and ϕ3 = 117.3 (4). On the other hand, the pyrimidine ring is effectively planar, with a maximum deviation from the mean plane of the six ring atoms of 0.031 (3) Å for atom C4. This contrasts with the behaviour often observed in highly substituted pyrimidines, particularly in those having three adjacent substituents at positions 4, 5 and 6, where markedly nonplanar ring conformations are often adopted, with boat forms most commonly observed (Melguizo et al., 2003; Quesada et al., 2004; Cobo et al., 2008). The geometry at amino atom N41 is slightly pyramidal, with a sum of interbond angles of 353.7°, but, despite this slightly pyramidal geometry, atom N41 does not act as an acceptor of hydrogen bonds. The closest H atom which might participate in an intermolecular interaction with atom N41 is atom H65 at (-x + 1, -y + 2, -z + 1), at a distance of 3.10 Å, far too long to be regarded as structurally significant. The bond distances present no unusual features.
The heterocyclic component of (I) participates in two intermolecular N—H···N hydrogen bonds (Table 2), which lead to the formation of a chain of centrosymmetric R22(8) (Bernstein et al., 1995) rings running parallel to the [001] direction (Fig. 2). The rings containing inversion-related pairs of atoms N1 as hydrogen-bond acceptors are centred at (1/2, 1/2, n), while those containing inversion-related pairs of atoms N3 as hydrogen-bond acceptors are centred at (1/2, 1/2, 1/2+n), where n represents an integer in both cases. The formation of this chain of rings utilizes only two of the three available N—H bonds. The third bond of this type does not participate in the formation of intermolecular hydrogen bonds, but merely forms a rather short intramolecular contact to atom N5, which likewise does not participate in any intermolecular hydrogen bonds. The N—H···N angle associated with this intramolecular contact is only 105° (Table 2), so this contact cannot be regarded as having any structural significance (cf. Wood et al., 2009). Thus, the only acceptors in the N—H···N hydrogen bonds are the two N atoms of the pyrimidine ring, and none of the other N atoms present acts as a hydrogen-bond acceptor.
One chain of R22(8) rings passes through each unit cell, but chains of this type which are related by translation along the [010] direction are linked by means of two C—H···O hydrogen bonds involving the O atom of the DMF component as a double acceptor (Table 2). These two hydrogen bonds generate a C21(9) chain running parallel to the [010] direction (Fig. 3), such that the DMF components lie between the chains of rings (Fig. 4). The combination of the chains along [010] and [001] generates a sheet lying parallel to (100) (Fig. 5) in which rings of types R54(18) and R64(24) can be identified, in addition to the two types of R22(8) ring discussed above.
There are a number of other short intra- and intermolecular contacts within the crystal structure of (I) (Table 3). However, those involving atoms C62 and C92 both have very small D—H···A angles and so are unlikely to have any structural significance (Wood et al., 2009). In addition, the contact involving atom C92 lies wholly within the DMF component, while the C92—H92A bond forms part of a methyl group which is likely to be undergoing very rapid rotation about the adjacent C—N bond, even in the solid state at low temperature (Riddell & Rogerson, 1996, 1997). The C—H···Cl contact involving atom C8 has an H···Cl distance which is only slightly less than the sum of the van der Waals radii of 2.84 Å (Bondi, 1964; Rowland & Taylor, 1996) and, in addition, it is well established (Brammer et al., 2001; Thallypally & Nangia, 2001) that Cl atoms bonded to C atoms are extremely poor acceptors of hydrogen bonds, even from good donors such as N and O atoms; hence, this contact is unlikely to have any structural significance. There are no intermolecular Cl···Cl contact distances within the sum of the van der Waals radii (3.50 Å; Bondi, 1964; Rowland & Taylor, 1996).
Chains of R22(8) rings are a common hydrogen-bonding motif in aminopyrimidines (Rodríguez et al., 2008), but disruption of such chain formation can result either from steric hindrance arising from bulky substituents or from the presence of an alternative hydrogen-bond acceptor which effectively competes with the pyrimidine ring N atoms. In the first of these circumstances, the supramolecular aggregation may be restricted to the formation of a simple dimer (Quesada et al., 2004), or to the formation of a linear tetramer (Bowes et al., 2003), where each of these aggregates can be regarded as a short fragment of a continuous chain. In the presence of alternative hydrogen-bond acceptors, such as O atoms, chains containing combinations of R22(8) and R44(16) rings (Quesada et al., 2002), or R22(8) and R44(18) rings (Bowes et al., 2003), and sheets containing R22(8) and R66(40) rings (Bowes et al., 2003), have all been observed. In every case, the R22(8) motif is present, as in (I) described here, but different additional ring motifs always occur in the presence of hydrogen-bond acceptors other than the N atoms of pyrimidine rings.
For related literature, see: Bernstein et al. (1995); Bondi (1964); Bowes et al. (2003); Brammer et al. (2001); Cobo et al. (2008); Cremer & Pople (1975); Deng et al. (2013); Evans & Boeyens (1989); Fader et al. (2011, 2013); Insuasty et al. (2010); Insuasty, Orozco, Lizarazo, Quiroga, Abonía, Hursthouse, Nogueras & Cobo (2008); Insuasty, Orozco, Quiroga, Abonía, Nogueras & Cobo (2008); Melguizo et al. (2003); Parmar et al. (2012); Quesada et al. (2002, 2004); Riddell & Rogerson (1996, 1997); Rodríguez et al. (2008); Rowland & Taylor (1996); Smith et al. (2006); Sternbach (1971); Thallypally & Nangia (2001); Wood et al. (2009).
Data collection: COLLECT (Nonius, 1999); cell refinement: DIRAX/LSQ (Duisenberg et al., 2000); data reduction: EVALCCD (Duisenberg et al., 2003); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
Fig. 1. The molecular components of (I), showing the atom-labelling scheme and
the C—H···O hydrogen bond (dashed line) within the selected asymmetric unit.
Displacement ellipsoids are drawn at the 30% probability level. Fig. 2. A stereoview of part of the crystal structure of (I), showing the formation of a chain of centrosymmetric R22(8) rings running parallel to the [001] direction. Hydrogen bonds are shown as dashed lines. For the sake of clarity, the DMF solvent molecules and H atoms bonded to C atoms have been omitted. Fig. 3. A stereoview of part of the crystal structure of (I), showing the formation of a C21(9) chain running parallel to the [010] direction. Hydrogen bonds are shown as dashed lines. [Significance of single- and double-dashed lines?] For the sake of clarity, H atoms not involved in the motif shown have been omitted. Fig. 4. Part of the crystal structure of (I), viewed approximately along the [010] direction, showing the location of the DMF components between the chains of rings parallel to [001]. Hydrogen bonds are shown as dashed lines. Fig. 5. A stereoview of part of the crystal structure of (I), showing the formation of a sheet parallel to (100) containing four types of hydrogen-bonded ring. Hydrogen bonds are shown as dashed lines. [Significance of single- and double-dashed lines?] For the sake of clarity, H atoms bonded to the C atoms which are not involved in the motifs shown have been omitted. |
C16H11Cl3N6S·C3H7NO | Z = 2 |
Mr = 498.82 | F(000) = 512 |
Triclinic, P1 | Dx = 1.538 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.2934 (6) Å | Cell parameters from 4914 reflections |
b = 10.968 (1) Å | θ = 2.9–27.5° |
c = 11.7071 (10) Å | µ = 0.55 mm−1 |
α = 69.610 (8)° | T = 120 K |
β = 87.450 (6)° | Plate, pale yellow |
γ = 74.688 (6)° | 0.32 × 0.21 × 0.07 mm |
V = 1077.34 (17) Å3 |
Bruker Nonius KappaCCD area-detector diffractometer | 4908 independent reflections |
Radiation source: Bruker Nonius FR591 rotating anode | 3534 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.065 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
ϕ and ω scans | h = −11→12 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −14→14 |
Tmin = 0.884, Tmax = 0.962 | l = −15→15 |
23893 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.090 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0223P)2 + 1.1607P] where P = (Fo2 + 2Fc2)/3 |
4908 reflections | (Δ/σ)max = 0.001 |
282 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.42 e Å−3 |
C16H11Cl3N6S·C3H7NO | γ = 74.688 (6)° |
Mr = 498.82 | V = 1077.34 (17) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.2934 (6) Å | Mo Kα radiation |
b = 10.968 (1) Å | µ = 0.55 mm−1 |
c = 11.7071 (10) Å | T = 120 K |
α = 69.610 (8)° | 0.32 × 0.21 × 0.07 mm |
β = 87.450 (6)° |
Bruker Nonius KappaCCD area-detector diffractometer | 4908 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 3534 reflections with I > 2σ(I) |
Tmin = 0.884, Tmax = 0.962 | Rint = 0.065 |
23893 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.090 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.32 e Å−3 |
4908 reflections | Δρmin = −0.42 e Å−3 |
282 parameters |
x | y | z | Uiso*/Ueq | ||
N1 | 0.5182 (2) | 0.48915 (19) | 0.85559 (17) | 0.0162 (4) | |
C2 | 0.5061 (3) | 0.4323 (2) | 0.7753 (2) | 0.0179 (5) | |
H2 | 0.4724 | 0.3528 | 0.8052 | 0.021* | |
N3 | 0.5353 (2) | 0.47220 (19) | 0.65761 (18) | 0.0187 (4) | |
C4 | 0.5846 (3) | 0.5849 (2) | 0.6165 (2) | 0.0165 (5) | |
C4a | 0.5935 (3) | 0.6615 (2) | 0.6908 (2) | 0.0146 (4) | |
N5 | 0.6443 (2) | 0.77628 (19) | 0.63120 (17) | 0.0163 (4) | |
C6 | 0.6114 (3) | 0.8819 (2) | 0.6622 (2) | 0.0157 (5) | |
C7 | 0.5115 (3) | 0.8931 (2) | 0.7653 (2) | 0.0168 (5) | |
H7A | 0.4150 | 0.8776 | 0.7506 | 0.020* | |
H7B | 0.4913 | 0.9854 | 0.7678 | 0.020* | |
C8 | 0.5844 (3) | 0.7896 (2) | 0.8893 (2) | 0.0149 (4) | |
H8 | 0.5269 | 0.8166 | 0.9548 | 0.018* | |
N9 | 0.5744 (2) | 0.65510 (18) | 0.90431 (17) | 0.0159 (4) | |
H9 | 0.5427 | 0.6131 | 0.9731 | 0.019* | |
C9a | 0.5616 (2) | 0.6067 (2) | 0.8136 (2) | 0.0147 (4) | |
N41 | 0.6270 (2) | 0.6210 (2) | 0.50087 (18) | 0.0209 (4) | |
H41A | 0.6028 | 0.5786 | 0.4448 | 0.025* | |
H41B | 0.6364 | 0.7137 | 0.4674 | 0.025* | |
C61 | 0.6783 (3) | 0.9934 (2) | 0.5919 (2) | 0.0170 (5) | |
C62 | 0.7680 (3) | 0.9815 (2) | 0.4950 (2) | 0.0219 (5) | |
H62 | 0.7829 | 0.9033 | 0.4736 | 0.026* | |
C63 | 0.8352 (3) | 1.0813 (2) | 0.4300 (2) | 0.0257 (6) | |
H63 | 0.8956 | 1.0723 | 0.3643 | 0.031* | |
C64 | 0.8131 (3) | 1.1952 (2) | 0.4624 (2) | 0.0220 (5) | |
Cl64 | 0.90541 (9) | 1.31785 (7) | 0.38615 (7) | 0.03536 (18) | |
C65 | 0.7248 (3) | 1.2111 (2) | 0.5555 (2) | 0.0226 (5) | |
H65 | 0.7104 | 1.2899 | 0.5760 | 0.027* | |
C66 | 0.6563 (3) | 1.1109 (2) | 0.6199 (2) | 0.0208 (5) | |
H66 | 0.5937 | 1.1222 | 0.6838 | 0.025* | |
S81 | 0.89137 (7) | 0.66025 (6) | 0.89844 (6) | 0.02024 (14) | |
C82 | 1.0130 (3) | 0.7462 (2) | 0.9184 (2) | 0.0219 (5) | |
N83 | 0.9541 (2) | 0.8612 (2) | 0.93179 (19) | 0.0210 (4) | |
C84 | 0.8012 (3) | 0.8852 (2) | 0.9247 (2) | 0.0178 (5) | |
C85 | 0.7439 (3) | 0.7908 (2) | 0.9062 (2) | 0.0151 (5) | |
Cl82 | 1.20168 (7) | 0.67929 (7) | 0.92165 (7) | 0.03491 (17) | |
Cl84 | 0.69444 (7) | 1.03173 (6) | 0.94045 (6) | 0.02664 (15) | |
N91 | 0.0742 (2) | 0.2713 (2) | 0.76010 (19) | 0.0215 (4) | |
C91 | 0.2073 (3) | 0.2935 (2) | 0.7662 (2) | 0.0244 (5) | |
H91 | 0.2080 | 0.3804 | 0.7652 | 0.029* | |
O91 | 0.3290 (2) | 0.21251 (17) | 0.77315 (18) | 0.0285 (4) | |
C92 | 0.0625 (3) | 0.1403 (3) | 0.7639 (3) | 0.0323 (6) | |
H92A | 0.1628 | 0.0793 | 0.7717 | 0.048* | |
H92B | 0.0109 | 0.1506 | 0.6885 | 0.048* | |
H92C | 0.0059 | 0.1026 | 0.8339 | 0.048* | |
C93 | −0.0644 (3) | 0.3766 (3) | 0.7439 (3) | 0.0350 (7) | |
H93A | −0.0434 | 0.4560 | 0.7525 | 0.053* | |
H93B | −0.1331 | 0.3437 | 0.8058 | 0.053* | |
H93C | −0.1102 | 0.4011 | 0.6624 | 0.053* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0165 (10) | 0.0174 (9) | 0.0169 (10) | −0.0083 (8) | 0.0023 (8) | −0.0061 (8) |
C2 | 0.0176 (12) | 0.0178 (11) | 0.0198 (12) | −0.0068 (9) | 0.0017 (9) | −0.0070 (10) |
N3 | 0.0235 (11) | 0.0192 (10) | 0.0169 (10) | −0.0088 (8) | 0.0025 (8) | −0.0087 (8) |
C4 | 0.0152 (11) | 0.0176 (11) | 0.0173 (11) | −0.0038 (9) | 0.0014 (9) | −0.0075 (9) |
C4a | 0.0147 (11) | 0.0154 (10) | 0.0145 (11) | −0.0049 (9) | −0.0008 (9) | −0.0052 (9) |
N5 | 0.0177 (10) | 0.0170 (9) | 0.0151 (9) | −0.0073 (8) | 0.0006 (8) | −0.0046 (8) |
C6 | 0.0142 (11) | 0.0175 (11) | 0.0148 (11) | −0.0048 (9) | −0.0013 (9) | −0.0043 (9) |
C7 | 0.0159 (12) | 0.0156 (11) | 0.0189 (11) | −0.0041 (9) | 0.0013 (9) | −0.0062 (9) |
C8 | 0.0150 (11) | 0.0160 (10) | 0.0163 (11) | −0.0066 (9) | 0.0033 (9) | −0.0074 (9) |
N9 | 0.0199 (10) | 0.0172 (9) | 0.0132 (9) | −0.0098 (8) | 0.0038 (8) | −0.0052 (8) |
C9a | 0.0117 (11) | 0.0167 (11) | 0.0177 (11) | −0.0048 (9) | 0.0010 (9) | −0.0077 (9) |
N41 | 0.0300 (12) | 0.0227 (10) | 0.0152 (10) | −0.0120 (9) | 0.0041 (9) | −0.0095 (8) |
C61 | 0.0159 (12) | 0.0163 (11) | 0.0175 (11) | −0.0042 (9) | −0.0016 (9) | −0.0040 (9) |
C62 | 0.0285 (14) | 0.0158 (11) | 0.0227 (12) | −0.0079 (10) | 0.0035 (11) | −0.0070 (10) |
C63 | 0.0321 (15) | 0.0236 (12) | 0.0231 (13) | −0.0107 (11) | 0.0091 (11) | −0.0088 (11) |
C64 | 0.0226 (13) | 0.0171 (11) | 0.0248 (13) | −0.0083 (10) | 0.0013 (10) | −0.0031 (10) |
Cl64 | 0.0460 (4) | 0.0246 (3) | 0.0392 (4) | −0.0209 (3) | 0.0158 (3) | −0.0088 (3) |
C65 | 0.0259 (14) | 0.0185 (11) | 0.0254 (13) | −0.0083 (10) | 0.0005 (11) | −0.0083 (10) |
C66 | 0.0253 (13) | 0.0199 (12) | 0.0184 (12) | −0.0069 (10) | 0.0026 (10) | −0.0078 (10) |
S81 | 0.0156 (3) | 0.0179 (3) | 0.0274 (3) | −0.0032 (2) | 0.0014 (2) | −0.0091 (2) |
C82 | 0.0154 (12) | 0.0229 (12) | 0.0251 (13) | −0.0054 (10) | −0.0011 (10) | −0.0050 (10) |
N83 | 0.0193 (11) | 0.0237 (10) | 0.0206 (10) | −0.0099 (8) | −0.0001 (8) | −0.0053 (9) |
C84 | 0.0177 (12) | 0.0169 (11) | 0.0196 (12) | −0.0056 (9) | 0.0020 (9) | −0.0067 (9) |
C85 | 0.0152 (11) | 0.0162 (10) | 0.0133 (11) | −0.0033 (9) | 0.0031 (9) | −0.0051 (9) |
Cl82 | 0.0139 (3) | 0.0363 (4) | 0.0479 (4) | −0.0036 (3) | 0.0003 (3) | −0.0088 (3) |
Cl84 | 0.0276 (3) | 0.0211 (3) | 0.0365 (4) | −0.0056 (2) | 0.0017 (3) | −0.0170 (3) |
N91 | 0.0208 (11) | 0.0197 (10) | 0.0254 (11) | −0.0068 (8) | 0.0026 (9) | −0.0088 (9) |
C91 | 0.0294 (15) | 0.0199 (12) | 0.0253 (13) | −0.0107 (11) | 0.0050 (11) | −0.0067 (11) |
O91 | 0.0219 (10) | 0.0242 (9) | 0.0379 (11) | −0.0073 (8) | 0.0044 (8) | −0.0085 (8) |
C92 | 0.0330 (16) | 0.0263 (13) | 0.0448 (17) | −0.0139 (12) | −0.0021 (13) | −0.0164 (13) |
C93 | 0.0248 (15) | 0.0314 (15) | 0.0496 (18) | −0.0031 (12) | 0.0020 (13) | −0.0183 (14) |
N1—C2 | 1.319 (3) | C63—C64 | 1.390 (3) |
N1—C9a | 1.372 (3) | C63—H63 | 0.9500 |
C2—N3 | 1.332 (3) | C64—C65 | 1.368 (4) |
C2—H2 | 0.9500 | C64—Cl64 | 1.745 (2) |
N3—C4 | 1.354 (3) | C65—C66 | 1.390 (3) |
C4—N41 | 1.344 (3) | C65—H65 | 0.9500 |
C4—C4a | 1.422 (3) | C66—H66 | 0.9500 |
C4a—N5 | 1.402 (3) | S81—C82 | 1.721 (3) |
C4a—C9a | 1.403 (3) | S81—C85 | 1.727 (2) |
N5—C6 | 1.289 (3) | C82—N83 | 1.296 (3) |
C6—C61 | 1.489 (3) | C82—Cl82 | 1.709 (3) |
C6—C7 | 1.509 (3) | N83—C84 | 1.376 (3) |
C7—C8 | 1.545 (3) | C84—C85 | 1.363 (3) |
C7—H7A | 0.9900 | C84—Cl84 | 1.718 (2) |
C7—H7B | 0.9900 | N91—C91 | 1.333 (3) |
C8—N9 | 1.452 (3) | N91—C93 | 1.453 (3) |
C8—C85 | 1.508 (3) | N91—C92 | 1.455 (3) |
C8—H8 | 1.0000 | C91—O91 | 1.226 (3) |
N9—C9a | 1.364 (3) | C91—H91 | 0.9500 |
N9—H9 | 0.8600 | C92—H92A | 0.9800 |
N41—H41A | 0.9896 | C92—H92B | 0.9800 |
N41—H41B | 0.9805 | C92—H92C | 0.9800 |
C61—C66 | 1.399 (3) | C93—H93A | 0.9800 |
C61—C62 | 1.401 (3) | C93—H93B | 0.9800 |
C62—C63 | 1.380 (3) | C93—H93C | 0.9800 |
C62—H62 | 0.9500 | ||
C2—N1—C9a | 117.0 (2) | C62—C63—C64 | 118.9 (2) |
N1—C2—N3 | 128.1 (2) | C62—C63—H63 | 120.5 |
N1—C2—H2 | 115.9 | C64—C63—H63 | 120.5 |
N3—C2—H2 | 115.9 | C65—C64—C63 | 121.5 (2) |
C2—N3—C4 | 115.25 (19) | C65—C64—Cl64 | 119.13 (19) |
N41—C4—N3 | 116.5 (2) | C63—C64—Cl64 | 119.3 (2) |
N41—C4—C4a | 120.9 (2) | C64—C65—C66 | 119.3 (2) |
N3—C4—C4a | 122.6 (2) | C64—C65—H65 | 120.4 |
N5—C4a—C9a | 129.7 (2) | C66—C65—H65 | 120.4 |
N5—C4a—C4 | 114.1 (2) | C65—C66—C61 | 121.0 (2) |
C9a—C4a—C4 | 116.0 (2) | C65—C66—H66 | 119.5 |
C6—N5—C4a | 123.5 (2) | C61—C66—H66 | 119.5 |
N5—C6—C61 | 116.8 (2) | C82—S81—C85 | 89.12 (11) |
N5—C6—C7 | 122.4 (2) | N83—C82—Cl82 | 122.87 (19) |
C61—C6—C7 | 120.87 (19) | N83—C82—S81 | 116.73 (19) |
C6—C7—C8 | 111.26 (18) | Cl82—C82—S81 | 120.40 (14) |
C6—C7—H7A | 109.4 | C82—N83—C84 | 108.1 (2) |
C8—C7—H7A | 109.4 | C85—C84—N83 | 118.0 (2) |
C6—C7—H7B | 109.4 | C85—C84—Cl84 | 124.08 (19) |
C8—C7—H7B | 109.4 | N83—C84—Cl84 | 117.93 (17) |
H7A—C7—H7B | 108.0 | C84—C85—C8 | 130.8 (2) |
N9—C8—C85 | 111.20 (18) | C84—C85—S81 | 108.02 (17) |
N9—C8—C7 | 111.28 (18) | C8—C85—S81 | 121.12 (16) |
C85—C8—C7 | 111.74 (18) | C91—N91—C93 | 122.2 (2) |
N9—C8—H8 | 107.5 | C91—N91—C92 | 120.6 (2) |
C85—C8—H8 | 107.5 | C93—N91—C92 | 117.1 (2) |
C7—C8—H8 | 107.5 | O91—C91—N91 | 126.2 (2) |
C9a—N9—C8 | 126.71 (19) | O91—C91—H91 | 116.9 |
C9a—N9—H9 | 114.6 | N91—C91—H91 | 116.9 |
C8—N9—H9 | 115.0 | N91—C92—H92A | 109.5 |
N9—C9a—N1 | 112.26 (19) | N91—C92—H92B | 109.5 |
N9—C9a—C4a | 126.9 (2) | H92A—C92—H92B | 109.5 |
N1—C9a—C4a | 120.8 (2) | N91—C92—H92C | 109.5 |
C4—N41—H41A | 120.5 | H92A—C92—H92C | 109.5 |
C4—N41—H41B | 114.0 | H92B—C92—H92C | 109.5 |
H41A—N41—H41B | 119.2 | N91—C93—H93A | 109.5 |
C66—C61—C62 | 118.1 (2) | N91—C93—H93B | 109.5 |
C66—C61—C6 | 122.3 (2) | H93A—C93—H93B | 109.5 |
C62—C61—C6 | 119.7 (2) | N91—C93—H93C | 109.5 |
C63—C62—C61 | 121.2 (2) | H93A—C93—H93C | 109.5 |
C63—C62—H62 | 119.4 | H93B—C93—H93C | 109.5 |
C61—C62—H62 | 119.4 | ||
C9a—N1—C2—N3 | 2.3 (4) | C7—C6—C61—C62 | −178.6 (2) |
N1—C2—N3—C4 | 0.6 (4) | C66—C61—C62—C63 | 1.2 (4) |
C2—N3—C4—N41 | 174.5 (2) | C6—C61—C62—C63 | −178.2 (2) |
C2—N3—C4—C4a | −4.8 (3) | C61—C62—C63—C64 | 0.2 (4) |
N41—C4—C4a—N5 | 2.0 (3) | C62—C63—C64—C65 | −1.0 (4) |
N3—C4—C4a—N5 | −178.7 (2) | C62—C63—C64—Cl64 | 176.7 (2) |
N41—C4—C4a—C9a | −173.4 (2) | C63—C64—C65—C66 | 0.4 (4) |
N3—C4—C4a—C9a | 5.9 (3) | Cl64—C64—C65—C66 | −177.22 (19) |
C9a—C4a—N5—C6 | −31.3 (4) | C64—C65—C66—C61 | 1.0 (4) |
C4—C4a—N5—C6 | 154.0 (2) | C62—C61—C66—C65 | −1.7 (4) |
C4a—N5—C6—C61 | 178.1 (2) | C6—C61—C66—C65 | 177.6 (2) |
C4a—N5—C6—C7 | −1.2 (3) | C85—S81—C82—N83 | 0.9 (2) |
N5—C6—C7—C8 | 65.5 (3) | C85—S81—C82—Cl82 | −179.79 (17) |
C61—C6—C7—C8 | −113.8 (2) | Cl82—C82—N83—C84 | −179.93 (18) |
C6—C7—C8—N9 | −76.7 (2) | S81—C82—N83—C84 | −0.6 (3) |
C6—C7—C8—C85 | 48.3 (2) | C82—N83—C84—C85 | −0.1 (3) |
C85—C8—N9—C9a | −100.0 (3) | C82—N83—C84—Cl84 | 179.64 (18) |
C7—C8—N9—C9a | 25.2 (3) | N83—C84—C85—C8 | −177.2 (2) |
C8—N9—C9a—N1 | −165.0 (2) | Cl84—C84—C85—C8 | 3.1 (4) |
C8—N9—C9a—C4a | 17.7 (4) | N83—C84—C85—S81 | 0.7 (3) |
C2—N1—C9a—N9 | −178.4 (2) | Cl84—C84—C85—S81 | −178.99 (14) |
C2—N1—C9a—C4a | −0.9 (3) | N9—C8—C85—C84 | −164.9 (2) |
N5—C4a—C9a—N9 | −0.3 (4) | C7—C8—C85—C84 | 70.1 (3) |
C4—C4a—C9a—N9 | 174.3 (2) | N9—C8—C85—S81 | 17.4 (3) |
N5—C4a—C9a—N1 | −177.4 (2) | C7—C8—C85—S81 | −107.63 (19) |
C4—C4a—C9a—N1 | −2.8 (3) | C82—S81—C85—C84 | −0.82 (18) |
N5—C6—C61—C66 | −177.3 (2) | C82—S81—C85—C8 | 177.33 (19) |
C7—C6—C61—C66 | 2.0 (3) | C93—N91—C91—O91 | −175.8 (3) |
N5—C6—C61—C62 | 2.0 (3) | C92—N91—C91—O91 | 1.3 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N9—H9···N1i | 0.86 | 2.07 | 2.924 (3) | 176 |
N41—H41A···N3ii | 0.99 | 2.09 | 3.024 (3) | 156 |
N41—H41B···N5 | 0.98 | 2.26 | 2.689 (3) | 105 |
C2—H2···O91 | 0.95 | 2.41 | 3.265 (3) | 149 |
C7—H7B···O91iii | 0.99 | 2.57 | 3.497 (3) | 156 |
C8—H8···Cl84iv | 1.00 | 2.81 | 3.756 (3) | 158 |
C62—H62···N5 | 0.95 | 2.44 | 2.763 (3) | 100 |
C92—H92A···O91 | 0.98 | 2.39 | 2.809 (4) | 105 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, −y+1, −z+1; (iii) x, y+1, z; (iv) −x+1, −y+2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C16H11Cl3N6S·C3H7NO |
Mr | 498.82 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 120 |
a, b, c (Å) | 9.2934 (6), 10.968 (1), 11.7071 (10) |
α, β, γ (°) | 69.610 (8), 87.450 (6), 74.688 (6) |
V (Å3) | 1077.34 (17) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.55 |
Crystal size (mm) | 0.32 × 0.21 × 0.07 |
Data collection | |
Diffractometer | Bruker Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.884, 0.962 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 23893, 4908, 3534 |
Rint | 0.065 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.090, 1.06 |
No. of reflections | 4908 |
No. of parameters | 282 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.42 |
Computer programs: COLLECT (Nonius, 1999), DIRAX/LSQ (Duisenberg et al., 2000), EVALCCD (Duisenberg et al., 2003), SIR2004 (Burla et al., 2005), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N9—H9···N1i | 0.86 | 2.07 | 2.924 (3) | 176 |
N41—H41A···N3ii | 0.99 | 2.09 | 3.024 (3) | 156 |
N41—H41B···N5 | 0.98 | 2.26 | 2.689 (3) | 105 |
C2—H2···O91 | 0.95 | 2.41 | 3.265 (3) | 149 |
C7—H7B···O91iii | 0.99 | 2.57 | 3.497 (3) | 156 |
C8—H8···Cl84iv | 1.00 | 2.81 | 3.756 (3) | 158 |
C62—H62···N5 | 0.95 | 2.44 | 2.763 (3) | 100 |
C92—H92A···O91 | 0.98 | 2.39 | 2.809 (4) | 105 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, −y+1, −z+1; (iii) x, y+1, z; (iv) −x+1, −y+2, −z+2. |
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