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The structures of the bichromophoric compounds
N-(1-naphthylacetyl)glycine phenacyl ester, C
22H
19NO
4, (I), and its oxygen analogue, phenacyl (1-naphthylacetoxy)acetate, C
22H
18O
5, (II), have been determined. The molecules of (I) are held together by intermolecular N-H
O hydrogen bonds between the carbonyl and N-H groups, while compound (II) does not show any hydrogen bonding in the crystal.
Supporting information
CCDC references: 205310; 205311
Compound (I) was synthesized by the coupling of commercially available N-t-Boc-L-Gly-OH (Fluka, Buchs, Switzerland) and phenacyl bromide (Banerjee & Falvey, 1997) brought about by stirring the mixture for 3 h under argon. The bichromophoric compound (I) was prepared by using DCC (N,N'-dicyclohexylcarbodiimide) and HOBt (1-hydroxybenzotriazole) as coupling reagents after cleavage of N-tert-butyloxycarbonyl protecting group by 3 M HCl in ethyl acetate (Narita et al., 1986). The single crystals of bichromophore (I) were recrystallized from ethanol.
Compound (II) was prepared by coupling of an appropriate carboxylic acid and phenacyl bromide. The acid was obtained by prolonging the 1-naphthaleneacetic acid by the acetyl fragment. In this procedure, the tert-butyl ester of bromoacetic acid was employed in addition to naphthylacetic acid (Ringshaw & Smith, 1964). The intermediate tert-butyl ester was then cleaved to the carboxylic acid using concentrated formic acid (Harada et al., 1997). The crude product (II) was recrystallized from a mixture of methanol and water (8:2).
For both compounds, data collection: Xcalibur (Oxford Diffraction Ltd, 2001); cell refinement: Xcalibur; data reduction: Xcalibur; program(s) used to solve structure: SHELXTL (Bruker, 1998); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Crystal data top
C22H19NO4 | F(000) = 1520 |
Mr = 361.38 | Dx = 1.340 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 500 reflections |
a = 9.1467 (18) Å | θ = 4.8–25.5° |
b = 16.102 (3) Å | µ = 0.09 mm−1 |
c = 24.318 (5) Å | T = 120 K |
V = 3581.5 (12) Å3 | Prism, colourless |
Z = 8 | 0.50 × 0.30 × 0.20 mm |
Data collection top
Kuma KM-4 CCD diffractometer | 3034 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.024 |
Graphite monochromator | θmax = 25.0°, θmin = 3.4° |
Detector resolution: 0.06 mm pixels mm-1 | h = −10→10 |
ω scans | k = −19→17 |
19123 measured reflections | l = −28→26 |
3141 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.085 | H-atom parameters constrained |
S = 1.17 | w = 1/[σ2(Fo2) + (0.0322P)2 + 1.2751P] where P = (Fo2 + 2Fc2)/3 |
3141 reflections | (Δ/σ)max = 0.001 |
244 parameters | Δρmax = 0.14 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
Crystal data top
C22H19NO4 | V = 3581.5 (12) Å3 |
Mr = 361.38 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 9.1467 (18) Å | µ = 0.09 mm−1 |
b = 16.102 (3) Å | T = 120 K |
c = 24.318 (5) Å | 0.50 × 0.30 × 0.20 mm |
Data collection top
Kuma KM-4 CCD diffractometer | 3034 reflections with I > 2σ(I) |
19123 measured reflections | Rint = 0.024 |
3141 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.085 | H-atom parameters constrained |
S = 1.17 | Δρmax = 0.14 e Å−3 |
3141 reflections | Δρmin = −0.21 e Å−3 |
244 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O17 | 0.65998 (10) | 0.23473 (6) | 0.59035 (4) | 0.0228 (2) | |
O20 | 0.78277 (11) | 0.31508 (7) | 0.50635 (4) | 0.0306 (3) | |
O13 | 0.66381 (10) | 0.24377 (6) | 0.74350 (4) | 0.0228 (2) | |
O21 | 0.72744 (11) | 0.34776 (6) | 0.63762 (4) | 0.0258 (2) | |
C16 | 0.73858 (15) | 0.27543 (9) | 0.62853 (5) | 0.0186 (3) | |
N14 | 0.88919 (12) | 0.24889 (7) | 0.70874 (4) | 0.0187 (3) | |
H14A | 0.9823 | 0.2606 | 0.7136 | 0.022* | |
C7 | 0.74024 (14) | 0.33868 (9) | 0.83701 (5) | 0.0196 (3) | |
C19 | 0.65279 (15) | 0.32702 (9) | 0.51156 (6) | 0.0212 (3) | |
C12 | 0.79381 (14) | 0.26151 (8) | 0.74904 (6) | 0.0181 (3) | |
C18 | 0.56832 (15) | 0.28602 (9) | 0.55754 (5) | 0.0220 (3) | |
H18A | 0.5234 | 0.3293 | 0.5810 | 0.026* | |
H18B | 0.4886 | 0.2520 | 0.5417 | 0.026* | |
C1 | 0.67051 (14) | 0.41319 (9) | 0.81970 (6) | 0.0201 (3) | |
C15 | 0.83971 (15) | 0.21602 (9) | 0.65720 (5) | 0.0200 (3) | |
H15A | 0.7882 | 0.1628 | 0.6636 | 0.024* | |
H15B | 0.9251 | 0.2047 | 0.6333 | 0.024* | |
C11 | 0.85410 (15) | 0.29747 (9) | 0.80180 (6) | 0.0221 (3) | |
H11A | 0.9008 | 0.2524 | 0.8232 | 0.027* | |
H11B | 0.9307 | 0.3387 | 0.7926 | 0.027* | |
C22 | 0.56871 (16) | 0.38023 (8) | 0.47326 (6) | 0.0215 (3) | |
C3 | 0.50006 (16) | 0.52625 (9) | 0.83853 (6) | 0.0282 (3) | |
H3A | 0.4316 | 0.5523 | 0.8623 | 0.034* | |
C8 | 0.70434 (15) | 0.30540 (9) | 0.88684 (6) | 0.0239 (3) | |
H8A | 0.7499 | 0.2553 | 0.8983 | 0.029* | |
C9 | 0.60184 (16) | 0.34348 (10) | 0.92144 (6) | 0.0285 (3) | |
H9A | 0.5787 | 0.3189 | 0.9559 | 0.034* | |
C27 | 0.42101 (16) | 0.39601 (9) | 0.48145 (6) | 0.0258 (3) | |
H27A | 0.3714 | 0.3714 | 0.5117 | 0.031* | |
C2 | 0.56809 (15) | 0.45190 (9) | 0.85518 (6) | 0.0220 (3) | |
C6 | 0.70002 (16) | 0.45115 (9) | 0.76843 (6) | 0.0259 (3) | |
H6A | 0.7678 | 0.4263 | 0.7438 | 0.031* | |
C4 | 0.53067 (18) | 0.56118 (10) | 0.78910 (7) | 0.0327 (4) | |
H4A | 0.4837 | 0.6112 | 0.7783 | 0.039* | |
C10 | 0.53578 (16) | 0.41478 (10) | 0.90626 (6) | 0.0273 (3) | |
H10A | 0.4669 | 0.4402 | 0.9302 | 0.033* | |
C23 | 0.63935 (18) | 0.41582 (10) | 0.42866 (6) | 0.0306 (4) | |
H23A | 0.7405 | 0.4057 | 0.4228 | 0.037* | |
C25 | 0.4167 (2) | 0.48175 (9) | 0.40174 (7) | 0.0374 (4) | |
H25A | 0.3645 | 0.5168 | 0.3772 | 0.045* | |
C24 | 0.5628 (2) | 0.46586 (10) | 0.39290 (7) | 0.0389 (4) | |
H24A | 0.6109 | 0.4895 | 0.3620 | 0.047* | |
C26 | 0.34662 (19) | 0.44715 (10) | 0.44588 (7) | 0.0330 (4) | |
H26A | 0.2460 | 0.4585 | 0.4520 | 0.040* | |
C5 | 0.63172 (18) | 0.52312 (10) | 0.75413 (7) | 0.0321 (4) | |
H5A | 0.6532 | 0.5480 | 0.7196 | 0.038* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O17 | 0.0252 (5) | 0.0217 (5) | 0.0214 (5) | 0.0024 (4) | −0.0077 (4) | −0.0017 (4) |
O20 | 0.0198 (6) | 0.0427 (7) | 0.0294 (6) | 0.0034 (5) | 0.0004 (4) | −0.0017 (5) |
O13 | 0.0129 (5) | 0.0302 (5) | 0.0254 (5) | −0.0014 (4) | 0.0001 (4) | −0.0038 (4) |
O21 | 0.0300 (6) | 0.0200 (5) | 0.0275 (5) | 0.0032 (4) | −0.0075 (4) | −0.0010 (4) |
C16 | 0.0172 (7) | 0.0220 (8) | 0.0166 (6) | −0.0002 (6) | 0.0017 (5) | 0.0003 (5) |
N14 | 0.0116 (5) | 0.0255 (6) | 0.0189 (6) | 0.0004 (5) | −0.0013 (4) | 0.0007 (5) |
C7 | 0.0150 (6) | 0.0233 (7) | 0.0205 (7) | −0.0019 (6) | −0.0047 (5) | −0.0023 (6) |
C19 | 0.0208 (7) | 0.0222 (7) | 0.0207 (7) | −0.0006 (6) | −0.0019 (6) | −0.0060 (6) |
C12 | 0.0143 (6) | 0.0179 (6) | 0.0220 (7) | 0.0018 (5) | −0.0012 (5) | 0.0026 (6) |
C18 | 0.0200 (7) | 0.0268 (7) | 0.0192 (7) | 0.0032 (6) | −0.0056 (6) | 0.0001 (6) |
C1 | 0.0172 (7) | 0.0221 (7) | 0.0210 (7) | −0.0050 (6) | −0.0026 (6) | −0.0001 (6) |
C15 | 0.0181 (7) | 0.0219 (7) | 0.0198 (7) | 0.0036 (6) | 0.0004 (6) | −0.0006 (6) |
C11 | 0.0159 (7) | 0.0278 (8) | 0.0226 (7) | 0.0003 (6) | −0.0027 (6) | −0.0024 (6) |
C22 | 0.0267 (7) | 0.0183 (7) | 0.0195 (7) | −0.0023 (6) | −0.0038 (6) | −0.0040 (5) |
C3 | 0.0249 (8) | 0.0245 (8) | 0.0351 (9) | 0.0025 (6) | 0.0001 (6) | −0.0016 (7) |
C8 | 0.0226 (7) | 0.0253 (8) | 0.0239 (7) | 0.0019 (6) | −0.0038 (6) | 0.0029 (6) |
C9 | 0.0287 (8) | 0.0355 (9) | 0.0212 (8) | 0.0003 (7) | 0.0025 (6) | 0.0053 (6) |
C27 | 0.0283 (8) | 0.0275 (8) | 0.0215 (7) | 0.0033 (6) | −0.0046 (6) | −0.0035 (6) |
C2 | 0.0176 (7) | 0.0237 (7) | 0.0247 (7) | −0.0015 (6) | −0.0016 (6) | −0.0013 (6) |
C6 | 0.0279 (7) | 0.0264 (8) | 0.0234 (7) | −0.0047 (6) | 0.0009 (6) | 0.0014 (6) |
C4 | 0.0342 (9) | 0.0227 (8) | 0.0412 (9) | 0.0014 (7) | −0.0045 (7) | 0.0054 (7) |
C10 | 0.0250 (8) | 0.0317 (8) | 0.0253 (8) | 0.0019 (7) | 0.0053 (6) | −0.0017 (6) |
C23 | 0.0345 (9) | 0.0279 (8) | 0.0293 (8) | −0.0091 (7) | −0.0007 (7) | 0.0000 (7) |
C25 | 0.0607 (12) | 0.0174 (8) | 0.0340 (9) | 0.0025 (8) | −0.0205 (8) | −0.0008 (7) |
C24 | 0.0615 (12) | 0.0269 (8) | 0.0284 (8) | −0.0152 (8) | −0.0059 (8) | 0.0069 (7) |
C26 | 0.0390 (9) | 0.0287 (8) | 0.0313 (9) | 0.0103 (7) | −0.0132 (7) | −0.0076 (7) |
C5 | 0.0411 (9) | 0.0279 (8) | 0.0272 (8) | −0.0053 (7) | −0.0013 (7) | 0.0098 (7) |
Geometric parameters (Å, º) top
O17—C16 | 1.3448 (16) | C22—C27 | 1.389 (2) |
O17—C18 | 1.4216 (16) | C3—C4 | 1.356 (2) |
O20—C19 | 1.2109 (17) | C3—C2 | 1.409 (2) |
O13—C12 | 1.2303 (16) | C3—H3A | 0.9500 |
O21—C16 | 1.1897 (17) | C8—C9 | 1.401 (2) |
C16—C15 | 1.5023 (19) | C8—H8A | 0.9500 |
N14—C12 | 1.3278 (18) | C9—C10 | 1.349 (2) |
N14—C15 | 1.4338 (17) | C9—H9A | 0.9500 |
N14—H14A | 0.8800 | C27—C26 | 1.375 (2) |
C7—C8 | 1.365 (2) | C27—H27A | 0.9500 |
C7—C1 | 1.422 (2) | C2—C10 | 1.410 (2) |
C7—C11 | 1.5026 (19) | C6—C5 | 1.362 (2) |
C19—C22 | 1.481 (2) | C6—H6A | 0.9500 |
C19—C18 | 1.5111 (19) | C4—C5 | 1.397 (2) |
C12—C11 | 1.5119 (19) | C4—H4A | 0.9500 |
C18—H18A | 0.9900 | C10—H10A | 0.9500 |
C18—H18B | 0.9900 | C23—C24 | 1.377 (2) |
C1—C6 | 1.415 (2) | C23—H23A | 0.9500 |
C1—C2 | 1.418 (2) | C25—C26 | 1.369 (2) |
C15—H15A | 0.9900 | C25—C24 | 1.378 (3) |
C15—H15B | 0.9900 | C25—H25A | 0.9500 |
C11—H11A | 0.9900 | C24—H24A | 0.9500 |
C11—H11B | 0.9900 | C26—H26A | 0.9500 |
C22—C23 | 1.387 (2) | C5—H5A | 0.9500 |
| | | |
C16—O17—C18 | 114.81 (11) | C27—C22—C19 | 121.38 (13) |
O21—C16—O17 | 124.02 (13) | C23—C22—C7 | 135.87 (9) |
O21—C16—C15 | 126.14 (13) | C27—C22—C7 | 92.42 (8) |
O17—C16—C15 | 109.84 (11) | C4—C3—C2 | 121.06 (15) |
C12—N14—C15 | 119.62 (11) | C4—C3—H3A | 119.5 |
C12—N14—H14A | 120.2 | C2—C3—H3A | 119.5 |
C15—N14—H14A | 120.2 | C7—C8—C9 | 121.49 (14) |
C8—C7—C1 | 119.07 (13) | C7—C8—H8A | 119.3 |
C8—C7—C11 | 119.95 (13) | C9—C8—H8A | 119.3 |
C1—C7—C11 | 120.97 (12) | C10—C9—C8 | 120.52 (14) |
C8—C7—C22 | 149.20 (9) | C10—C9—H9A | 119.7 |
C1—C7—C22 | 64.45 (8) | C8—C9—H9A | 119.7 |
C11—C7—C22 | 66.05 (7) | C26—C27—C22 | 120.05 (15) |
O20—C19—C22 | 122.41 (13) | C26—C27—H27A | 120.0 |
O20—C19—C18 | 120.66 (13) | C22—C27—H27A | 120.0 |
C22—C19—C18 | 116.92 (12) | C3—C2—C10 | 121.40 (13) |
O13—C12—N14 | 121.24 (13) | C3—C2—C1 | 119.37 (13) |
O13—C12—C11 | 122.31 (12) | C10—C2—C1 | 119.23 (13) |
N14—C12—C11 | 116.45 (11) | C5—C6—C1 | 120.35 (14) |
O17—C18—C19 | 111.56 (11) | C5—C6—H6A | 119.8 |
O17—C18—H18A | 109.3 | C1—C6—H6A | 119.8 |
C19—C18—H18A | 109.3 | C3—C4—C5 | 119.60 (15) |
O17—C18—H18B | 109.3 | C3—C4—H4A | 120.2 |
C19—C18—H18B | 109.3 | C5—C4—H4A | 120.2 |
H18A—C18—H18B | 108.0 | C9—C10—C2 | 120.54 (14) |
C6—C1—C2 | 118.19 (13) | C9—C10—H10A | 119.7 |
C6—C1—C7 | 122.67 (13) | C2—C10—H10A | 119.7 |
C2—C1—C7 | 119.14 (13) | C24—C23—C22 | 119.94 (16) |
N14—C15—C16 | 111.41 (11) | C24—C23—H23A | 120.0 |
N14—C15—H15A | 109.3 | C22—C23—H23A | 120.0 |
C16—C15—H15A | 109.3 | C26—C25—C24 | 120.06 (15) |
N14—C15—H15B | 109.3 | C26—C25—H25A | 120.0 |
C16—C15—H15B | 109.3 | C24—C25—H25A | 120.0 |
H15A—C15—H15B | 108.0 | C23—C24—C25 | 120.23 (16) |
C7—C11—C12 | 113.57 (11) | C23—C24—H24A | 119.9 |
C7—C11—H11A | 108.9 | C25—C24—H24A | 119.9 |
C12—C11—H11A | 108.9 | C25—C26—C27 | 120.38 (16) |
C7—C11—H11B | 108.9 | C25—C26—H26A | 119.8 |
C12—C11—H11B | 108.9 | C27—C26—H26A | 119.8 |
H11A—C11—H11B | 107.7 | C6—C5—C4 | 121.42 (15) |
C23—C22—C27 | 119.33 (14) | C6—C5—H5A | 119.3 |
C23—C22—C19 | 119.28 (14) | C4—C5—H5A | 119.3 |
| | | |
C18—O17—C16—O21 | 4.87 (19) | C11—C7—C22—C27 | 159.23 (12) |
C18—O17—C16—C15 | −175.33 (11) | C8—C7—C22—C19 | −87.4 (2) |
C15—N14—C12—O13 | 1.66 (19) | C1—C7—C22—C19 | 168.15 (14) |
C15—N14—C12—C11 | −179.13 (12) | C11—C7—C22—C19 | 21.39 (13) |
C16—O17—C18—C19 | 81.18 (14) | C1—C7—C8—C9 | −0.7 (2) |
O20—C19—C18—O17 | −0.62 (19) | C11—C7—C8—C9 | 178.10 (13) |
C22—C19—C18—O17 | 178.19 (11) | C22—C7—C8—C9 | −89.0 (2) |
C8—C7—C1—C6 | −179.18 (13) | C7—C8—C9—C10 | −0.2 (2) |
C11—C7—C1—C6 | 2.0 (2) | C23—C22—C27—C26 | −0.7 (2) |
C22—C7—C1—C6 | −33.75 (11) | C19—C22—C27—C26 | 178.56 (13) |
C8—C7—C1—C2 | 1.42 (19) | C7—C22—C27—C26 | 147.28 (12) |
C11—C7—C1—C2 | −177.40 (12) | C4—C3—C2—C10 | −179.37 (15) |
C22—C7—C1—C2 | 146.85 (14) | C4—C3—C2—C1 | 0.2 (2) |
C12—N14—C15—C16 | 65.17 (16) | C6—C1—C2—C3 | −0.2 (2) |
O21—C16—C15—N14 | 18.7 (2) | C7—C1—C2—C3 | 179.22 (13) |
O17—C16—C15—N14 | −161.06 (11) | C6—C1—C2—C10 | 179.36 (13) |
C8—C7—C11—C12 | 113.42 (14) | C7—C1—C2—C10 | −1.2 (2) |
C1—C7—C11—C12 | −67.77 (17) | C2—C1—C6—C5 | 0.3 (2) |
C22—C7—C11—C12 | −32.55 (9) | C7—C1—C6—C5 | −179.10 (14) |
O13—C12—C11—C7 | −21.93 (19) | C2—C3—C4—C5 | −0.3 (2) |
N14—C12—C11—C7 | 158.87 (12) | C8—C9—C10—C2 | 0.4 (2) |
O20—C19—C22—C23 | 2.2 (2) | C3—C2—C10—C9 | 179.87 (14) |
C18—C19—C22—C23 | −176.63 (12) | C1—C2—C10—C9 | 0.3 (2) |
O20—C19—C22—C27 | −177.09 (14) | C27—C22—C23—C24 | −0.3 (2) |
C18—C19—C22—C27 | 4.12 (19) | C19—C22—C23—C24 | −179.59 (13) |
O20—C19—C22—C7 | −125.32 (18) | C7—C22—C23—C24 | −130.77 (13) |
C18—C19—C22—C7 | 55.90 (10) | C22—C23—C24—C25 | 1.0 (2) |
C8—C7—C22—C23 | −171.2 (2) | C26—C25—C24—C23 | −0.6 (2) |
C1—C7—C22—C23 | 84.37 (16) | C24—C25—C26—C27 | −0.4 (2) |
C11—C7—C22—C23 | −62.39 (16) | C22—C27—C26—C25 | 1.1 (2) |
C8—C7—C22—C27 | 50.5 (2) | C1—C6—C5—C4 | −0.4 (2) |
C1—C7—C22—C27 | −54.01 (11) | C3—C4—C5—C6 | 0.4 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N14—H14A···O13i | 0.88 | 1.98 | 2.7686 (15) | 149 |
Symmetry code: (i) x+1/2, y, −z+3/2. |
Crystal data top
C22H18O5 | F(000) = 760 |
Mr = 362.36 | Dx = 1.354 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 500 reflections |
a = 8.927 (2) Å | θ = 4.5–27.8° |
b = 11.413 (2) Å | µ = 0.10 mm−1 |
c = 17.875 (4) Å | T = 120 K |
β = 102.50 (3)° | Prism, colourless |
V = 1778.0 (7) Å3 | 0.40 × 0.40 × 0.30 mm |
Z = 4 | |
Data collection top
Kuma KM-4 CCD diffractometer | 2917 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.021 |
Graphite monochromator | θmax = 25.0°, θmin = 3.4° |
Detector resolution: 0.06 mm pixels mm-1 | h = −10→6 |
ω scans | k = −13→13 |
10881 measured reflections | l = −20→21 |
3128 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.084 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0366P)2 + 0.6568P] where P = (Fo2 + 2Fc2)/3 |
3128 reflections | (Δ/σ)max = 0.001 |
244 parameters | Δρmax = 0.15 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
Crystal data top
C22H18O5 | V = 1778.0 (7) Å3 |
Mr = 362.36 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.927 (2) Å | µ = 0.10 mm−1 |
b = 11.413 (2) Å | T = 120 K |
c = 17.875 (4) Å | 0.40 × 0.40 × 0.30 mm |
β = 102.50 (3)° | |
Data collection top
Kuma KM-4 CCD diffractometer | 2917 reflections with I > 2σ(I) |
10881 measured reflections | Rint = 0.021 |
3128 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.084 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.15 e Å−3 |
3128 reflections | Δρmin = −0.20 e Å−3 |
244 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O21 | 0.20177 (10) | 0.20181 (8) | 0.07671 (6) | 0.0294 (2) | |
O17 | 0.07631 (10) | 0.36114 (7) | 0.10469 (5) | 0.0249 (2) | |
O14 | −0.03387 (10) | 0.06219 (8) | 0.09141 (5) | 0.0253 (2) | |
O20 | 0.07771 (11) | 0.37934 (8) | −0.04304 (5) | 0.0291 (2) | |
O13 | 0.14173 (11) | 0.03358 (8) | 0.20015 (5) | 0.0325 (2) | |
C19 | 0.17067 (14) | 0.44126 (10) | −0.00189 (7) | 0.0212 (3) | |
C12 | 0.07612 (15) | −0.00061 (11) | 0.13881 (7) | 0.0237 (3) | |
C27 | 0.36278 (14) | 0.60456 (11) | 0.01506 (7) | 0.0215 (3) | |
H27A | 0.3686 | 0.6032 | 0.0687 | 0.026* | |
C16 | 0.09405 (14) | 0.24649 (11) | 0.09478 (7) | 0.0226 (3) | |
C25 | 0.44048 (14) | 0.68663 (11) | −0.09360 (8) | 0.0249 (3) | |
H25A | 0.4988 | 0.7423 | −0.1147 | 0.030* | |
C23 | 0.26109 (14) | 0.52814 (11) | −0.11069 (7) | 0.0239 (3) | |
H23A | 0.1969 | 0.4744 | −0.1434 | 0.029* | |
C22 | 0.26760 (13) | 0.52613 (10) | −0.03241 (7) | 0.0203 (3) | |
C18 | 0.18937 (14) | 0.43551 (11) | 0.08400 (7) | 0.0229 (3) | |
H18A | 0.2929 | 0.4054 | 0.1074 | 0.027* | |
H18B | 0.1801 | 0.5153 | 0.1043 | 0.027* | |
C7 | 0.22398 (15) | −0.18940 (11) | 0.14771 (7) | 0.0235 (3) | |
C1 | 0.38031 (15) | −0.16346 (11) | 0.14962 (7) | 0.0251 (3) | |
C9 | 0.30239 (19) | −0.35660 (12) | 0.22930 (8) | 0.0351 (3) | |
H9A | 0.2744 | −0.4213 | 0.2568 | 0.042* | |
C6 | 0.42717 (18) | −0.06697 (12) | 0.11045 (8) | 0.0334 (3) | |
H6A | 0.3525 | −0.0146 | 0.0828 | 0.040* | |
C15 | −0.04277 (15) | 0.18251 (11) | 0.11081 (8) | 0.0260 (3) | |
H15A | −0.0450 | 0.1900 | 0.1657 | 0.031* | |
H15B | −0.1383 | 0.2172 | 0.0803 | 0.031* | |
C8 | 0.18822 (17) | −0.28402 (12) | 0.18693 (7) | 0.0284 (3) | |
H8A | 0.0835 | −0.3012 | 0.1855 | 0.034* | |
C2 | 0.49524 (16) | −0.23851 (13) | 0.19178 (8) | 0.0318 (3) | |
C24 | 0.34744 (15) | 0.60796 (11) | −0.14101 (7) | 0.0258 (3) | |
H24A | 0.3430 | 0.6089 | −0.1946 | 0.031* | |
C11 | 0.09842 (16) | −0.11547 (11) | 0.10185 (7) | 0.0274 (3) | |
H11A | 0.0011 | −0.1601 | 0.0934 | 0.033* | |
H11B | 0.1217 | −0.1000 | 0.0511 | 0.033* | |
C26 | 0.44885 (14) | 0.68438 (11) | −0.01556 (8) | 0.0243 (3) | |
H26A | 0.5139 | 0.7378 | 0.0170 | 0.029* | |
C5 | 0.5789 (2) | −0.04859 (15) | 0.11206 (10) | 0.0477 (4) | |
H5A | 0.6089 | 0.0158 | 0.0850 | 0.057* | |
C10 | 0.45162 (19) | −0.33513 (13) | 0.23132 (8) | 0.0364 (4) | |
H10A | 0.5280 | −0.3855 | 0.2596 | 0.044* | |
C4 | 0.6906 (2) | −0.12384 (16) | 0.15323 (12) | 0.0537 (5) | |
H4A | 0.7958 | −0.1101 | 0.1537 | 0.064* | |
C3 | 0.65069 (18) | −0.21575 (16) | 0.19223 (10) | 0.0460 (4) | |
H3A | 0.7281 | −0.2656 | 0.2203 | 0.055* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O21 | 0.0269 (5) | 0.0227 (5) | 0.0416 (6) | 0.0036 (4) | 0.0137 (4) | 0.0035 (4) |
O17 | 0.0254 (5) | 0.0194 (4) | 0.0322 (5) | −0.0001 (4) | 0.0114 (4) | −0.0003 (4) |
O14 | 0.0259 (5) | 0.0210 (5) | 0.0278 (5) | −0.0003 (4) | 0.0034 (4) | 0.0033 (4) |
O20 | 0.0308 (5) | 0.0235 (5) | 0.0302 (5) | −0.0060 (4) | 0.0003 (4) | −0.0015 (4) |
O13 | 0.0450 (6) | 0.0270 (5) | 0.0227 (5) | 0.0055 (4) | 0.0013 (4) | −0.0016 (4) |
C19 | 0.0207 (6) | 0.0156 (6) | 0.0261 (6) | 0.0040 (5) | 0.0026 (5) | −0.0014 (5) |
C12 | 0.0262 (7) | 0.0231 (6) | 0.0224 (7) | −0.0011 (5) | 0.0063 (5) | 0.0037 (5) |
C27 | 0.0237 (6) | 0.0197 (6) | 0.0210 (6) | 0.0024 (5) | 0.0045 (5) | −0.0015 (5) |
C16 | 0.0253 (7) | 0.0210 (6) | 0.0214 (6) | 0.0024 (5) | 0.0046 (5) | 0.0037 (5) |
C25 | 0.0219 (6) | 0.0225 (6) | 0.0313 (7) | 0.0035 (5) | 0.0078 (5) | 0.0055 (5) |
C23 | 0.0241 (6) | 0.0230 (6) | 0.0230 (6) | 0.0022 (5) | 0.0012 (5) | −0.0025 (5) |
C22 | 0.0196 (6) | 0.0171 (6) | 0.0236 (6) | 0.0046 (5) | 0.0037 (5) | −0.0002 (5) |
C18 | 0.0232 (6) | 0.0181 (6) | 0.0281 (7) | −0.0027 (5) | 0.0072 (5) | −0.0008 (5) |
C7 | 0.0322 (7) | 0.0200 (6) | 0.0180 (6) | 0.0002 (5) | 0.0045 (5) | −0.0052 (5) |
C1 | 0.0323 (7) | 0.0217 (6) | 0.0217 (6) | −0.0005 (5) | 0.0070 (5) | −0.0087 (5) |
C9 | 0.0617 (10) | 0.0217 (7) | 0.0214 (7) | 0.0009 (7) | 0.0078 (6) | −0.0006 (5) |
C6 | 0.0452 (8) | 0.0246 (7) | 0.0344 (8) | −0.0048 (6) | 0.0170 (7) | −0.0092 (6) |
C15 | 0.0254 (7) | 0.0212 (6) | 0.0326 (7) | 0.0018 (5) | 0.0086 (5) | 0.0027 (5) |
C8 | 0.0398 (8) | 0.0237 (7) | 0.0225 (6) | −0.0034 (6) | 0.0083 (6) | −0.0047 (5) |
C2 | 0.0341 (8) | 0.0304 (7) | 0.0286 (7) | 0.0048 (6) | 0.0016 (6) | −0.0144 (6) |
C24 | 0.0270 (7) | 0.0288 (7) | 0.0221 (6) | 0.0056 (6) | 0.0061 (5) | 0.0036 (5) |
C11 | 0.0309 (7) | 0.0256 (7) | 0.0240 (7) | 0.0004 (6) | 0.0024 (5) | −0.0023 (5) |
C26 | 0.0227 (6) | 0.0195 (6) | 0.0298 (7) | 0.0003 (5) | 0.0039 (5) | −0.0014 (5) |
C5 | 0.0556 (10) | 0.0358 (9) | 0.0615 (11) | −0.0196 (8) | 0.0344 (9) | −0.0226 (8) |
C10 | 0.0513 (9) | 0.0282 (7) | 0.0248 (7) | 0.0135 (7) | −0.0027 (6) | −0.0056 (6) |
C4 | 0.0365 (9) | 0.0492 (11) | 0.0808 (13) | −0.0103 (8) | 0.0242 (9) | −0.0328 (10) |
C3 | 0.0335 (8) | 0.0449 (10) | 0.0561 (10) | 0.0056 (7) | 0.0023 (7) | −0.0262 (8) |
Geometric parameters (Å, º) top
O21—C16 | 1.1930 (16) | C7—C11 | 1.4975 (18) |
O17—C16 | 1.3345 (16) | C1—C6 | 1.4159 (19) |
O17—C18 | 1.4274 (15) | C1—C2 | 1.4211 (19) |
O14—C12 | 1.3548 (16) | C9—C10 | 1.347 (2) |
O14—C15 | 1.4227 (16) | C9—C8 | 1.402 (2) |
O20—C19 | 1.2103 (15) | C9—H9A | 0.9500 |
O13—C12 | 1.1914 (16) | C6—C5 | 1.365 (2) |
C19—C22 | 1.4795 (18) | C6—H6A | 0.9500 |
C19—C18 | 1.5095 (18) | C15—H15A | 0.9900 |
C12—C11 | 1.5005 (18) | C15—H15B | 0.9900 |
C27—C26 | 1.3790 (18) | C8—H8A | 0.9500 |
C27—C22 | 1.3896 (17) | C2—C10 | 1.409 (2) |
C27—H27A | 0.9500 | C2—C3 | 1.410 (2) |
C16—C15 | 1.5029 (18) | C24—H24A | 0.9500 |
C25—C26 | 1.3809 (19) | C11—H11A | 0.9900 |
C25—C24 | 1.3818 (19) | C11—H11B | 0.9900 |
C25—H25A | 0.9500 | C26—H26A | 0.9500 |
C23—C24 | 1.3779 (19) | C5—C4 | 1.399 (3) |
C23—C22 | 1.3880 (18) | C5—H5A | 0.9500 |
C23—H23A | 0.9500 | C10—H10A | 0.9500 |
C18—H18A | 0.9900 | C4—C3 | 1.349 (3) |
C18—H18B | 0.9900 | C4—H4A | 0.9500 |
C7—C8 | 1.3626 (18) | C3—H3A | 0.9500 |
C7—C1 | 1.4198 (19) | | |
| | | |
C16—O17—C18 | 115.96 (10) | C5—C6—H6A | 119.8 |
C12—O14—C15 | 115.43 (10) | C1—C6—H6A | 119.8 |
O20—C19—C22 | 122.48 (11) | O14—C15—C16 | 109.39 (10) |
O20—C19—C18 | 120.20 (11) | O14—C15—H15A | 109.8 |
C22—C19—C18 | 117.31 (10) | C16—C15—H15A | 109.8 |
O13—C12—O14 | 123.21 (12) | O14—C15—H15B | 109.8 |
O13—C12—C11 | 127.28 (12) | C16—C15—H15B | 109.8 |
O14—C12—C11 | 109.52 (11) | H15A—C15—H15B | 108.2 |
C26—C27—C22 | 120.18 (12) | C7—C8—C9 | 121.50 (14) |
C26—C27—H27A | 119.9 | C7—C8—H8A | 119.2 |
C22—C27—H27A | 119.9 | C9—C8—H8A | 119.2 |
O21—C16—O17 | 125.51 (12) | C10—C2—C3 | 121.31 (15) |
O21—C16—C15 | 125.44 (12) | C10—C2—C1 | 119.44 (13) |
O17—C16—C15 | 109.05 (10) | C3—C2—C1 | 119.25 (15) |
C26—C25—C24 | 120.09 (12) | C23—C24—C25 | 120.10 (12) |
C26—C25—H25A | 120.0 | C23—C24—H24A | 119.9 |
C24—C25—H25A | 120.0 | C25—C24—H24A | 119.9 |
C24—C23—C22 | 120.16 (12) | C7—C11—C12 | 113.96 (11) |
C24—C23—H23A | 119.9 | C7—C11—H11A | 108.8 |
C22—C23—H23A | 119.9 | C12—C11—H11A | 108.8 |
C23—C22—C27 | 119.44 (12) | C7—C11—H11B | 108.8 |
C23—C22—C19 | 118.83 (11) | C12—C11—H11B | 108.8 |
C27—C22—C19 | 121.72 (11) | H11A—C11—H11B | 107.7 |
O17—C18—C19 | 111.14 (10) | C27—C26—C25 | 120.01 (12) |
O17—C18—H18A | 109.4 | C27—C26—H26A | 120.0 |
C19—C18—H18A | 109.4 | C25—C26—H26A | 120.0 |
O17—C18—H18B | 109.4 | C6—C5—C4 | 120.54 (16) |
C19—C18—H18B | 109.4 | C6—C5—H5A | 119.7 |
H18A—C18—H18B | 108.0 | C4—C5—H5A | 119.7 |
C8—C7—C1 | 119.43 (12) | C9—C10—C2 | 120.51 (13) |
C8—C7—C11 | 119.82 (12) | C9—C10—H10A | 119.7 |
C1—C7—C11 | 120.74 (12) | C2—C10—H10A | 119.7 |
C6—C1—C7 | 122.98 (13) | C3—C4—C5 | 120.74 (15) |
C6—C1—C2 | 118.32 (13) | C3—C4—H4A | 119.6 |
C7—C1—C2 | 118.70 (12) | C5—C4—H4A | 119.6 |
C10—C9—C8 | 120.41 (14) | C4—C3—C2 | 120.66 (16) |
C10—C9—H9A | 119.8 | C4—C3—H3A | 119.7 |
C8—C9—H9A | 119.8 | C2—C3—H3A | 119.7 |
C5—C6—C1 | 120.48 (15) | | |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | C22H19NO4 | C22H18O5 |
Mr | 361.38 | 362.36 |
Crystal system, space group | Orthorhombic, Pbca | Monoclinic, P21/c |
Temperature (K) | 120 | 120 |
a, b, c (Å) | 9.1467 (18), 16.102 (3), 24.318 (5) | 8.927 (2), 11.413 (2), 17.875 (4) |
α, β, γ (°) | 90, 90, 90 | 90, 102.50 (3), 90 |
V (Å3) | 3581.5 (12) | 1778.0 (7) |
Z | 8 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.09 | 0.10 |
Crystal size (mm) | 0.50 × 0.30 × 0.20 | 0.40 × 0.40 × 0.30 |
|
Data collection |
Diffractometer | Kuma KM-4 CCD diffractometer | Kuma KM-4 CCD diffractometer |
Absorption correction | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19123, 3141, 3034 | 10881, 3128, 2917 |
Rint | 0.024 | 0.021 |
(sin θ/λ)max (Å−1) | 0.595 | 0.595 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.085, 1.17 | 0.035, 0.084, 1.06 |
No. of reflections | 3141 | 3128 |
No. of parameters | 244 | 244 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.14, −0.21 | 0.15, −0.20 |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N14—H14A···O13i | 0.88 | 1.98 | 2.7686 (15) | 149 |
Symmetry code: (i) x+1/2, y, −z+3/2. |
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In recent years, research in the area of intramolecular charge and energy transfer (ET) in polychromophoric molecules has become increasingly important in connection with understanding the effects of molecular conformation, interchromophore distance, and the bridging architecture on the mechanisms of transfer process (Chattoraj et al., 1991; Morrison et al., 1986; Borkent et al., 1978).
In case of the title compounds, (I) and (II), in solution, ET between an electronically excited triplet donor (phenacyl) and an acceptor (naphthyl) moiety proceeds by an electron-exchange mechanism, which requires a close contact between the chromophores (Zabadal et al., 2002). ET in the bichromophore (II) was found to be faster than that in (I), which should be closely related to a higher flexibility of (II), i.e. conformations with an easier contact of the terminal chromophores.
Contrary to the remarkable difference in the molecular conformations (and corresponding ET rates) in solution, the molecular structures in the solid phase are very similar. In the crystal structure of (I), the C7—C22 distance is 9.009 (3) Å, while the same distance in (II) is 8.818 (2) Å. The mutual distance of chromophores is obviously controlled mainly by the length and shape of the central chain. Replacing the –NH– group in (I) by –O– in (II) does not significantly affect the spatial arrangement of the bridging atoms; the r.m.s. deviations of the superimposed atomic chains (based on C12, N14/O14, C15, C16, O17 and C18) being 0.1425 Å (Fig. 5). This is also reflected in the dihedral angles throughout the chain, where the most different pairs are C15—O14—C12—C11/C15—N14—C12—C11 of −166.28 (10)/-179.18 (12)° and O17—C16—C15—N14/O17—C16—C15—O14 of −161.14 (11)/172.92 (10)°.
Compound (I) forms a hydrogen-bonded polymer (see Fig. 3 and Table 1). Compared to (II), the C12═O13 double bond in (I) is elongated due to the hydrogen bonding, viz. 1.230 (2) versus 1.192 (2) Å. This is similar to what was found for the analogous bond in 1-naphthaleneacetic acid [1.211 (10) Å; Rajan, 1978], which forms hydrogen-bonded dimers. The shortest contact in (II) is between atom O14 and one of the C11 H atoms in two neighboring molecules [2.551 (16) Å], both molecules thus forming a dimer, with atoms O14, C12, C11, and H11A and their symmetry equivalents in another molecule forming an eight-membered ring (Fig. 4).
In spite of an exact crystallographical description of their conformations in the solid phase, the study of polychromophores in solution is of great importance, especially in flexible systems, in which two chromophores are connected by long bridges. The conformations, due to different driving forces in both the solid and liquid phases, differ significantly, and so the crystal structure/ET properties relationships are not directly obvious.