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The title compounds,
tert-butyl 6-benzyl-2-(3,3-diethylureido)-4,5,6,7-tetrahydrothieno[2,3-
c]pyridine-3-carboxylate, C
24H
33N
3O
3S, (I), 7-benzyl-2-diethylamino-5,6,7,8-tetrahydro-3-oxa-9-thia-1,7-diazafluoren-4-one, C
20H
23N
3O
2S, (II), and
N-(7-benzyl-4-oxo-5,6,7,8-tetrahydro-4
H-3,9-dithia-1,7-diazafluoren-2-yl)benzamide, C
23H
19N
3O
2S
2, (III), form monoclinic crystal systems. In (I) and (II), the molecules are linked into a three-dimensional framework by weak intermolecular C-H
O=C hydrogen bonds, whereas in (III) stronger intermolecular N-H
O=C interactions are observed. The conformation of (I) is further stabilized by an intramolecular N-H
O=C hydrogen bond, which effects the planarity of the ureidothiophenecarboxylate moiety.
Supporting information
CCDC references: 641798; 641799; 641800
The preparation of compounds (I)–(III) was carried out as described previously
(Pietsch & Gütschow, 2005). Yellow crystals of (I) suitable for X-ray
analysis were grown from methanol; yellow crystals of (II) and (III) were
obtained upon recrystallization from hexane and ethyl acetate, respectively.
AChE inhibition by compound (I) was assayed spectrophometrically in two
separate experiments (each in duplicate) at a single concentration (10
µM) according to the method of Ellman et al. (1961) as
described elsewhere (Pietsch & Gütschow, 2005).
All H atoms were initially located in a difference Fourier map. The methyl H
atoms were then constrained to an ideal geometry with C—H distances of 0.98 Å and Uiso(H) = 1.5Ueq(C). The H atoms bound to an N atom
were refined freely with N—H distances in the range 0.86–0.88 Å and
Uiso(H) = 1.2Ueq(N). All other H atoms were placed in
geometrically idealized positions and constrained to ride on their parent
atoms with C—H distances in the range 0.95–0.99 Å and Uiso(H) =
1.2Ueq(C).
For all compounds, data collection: COLLECT (Nonius, 1998); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN; program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Sheldrick, 2001). Software used to prepare material for publication: SHELXL97 (Sheldrick, 1997); calculation of dihedral angels between planes and mean deviation of atoms from the plane: DIAMOND 3.1d (Brandenburg, 2006) for (I), (III); SHELXL97 (Sheldrick, 1997) for (II).
(I)
tert-butyl
6_benzyl-2-(3,3-diethylureido)-4,5,6,7-tetrahydrothieno[2,3-
c]pyridine-
3-carboxylate
top
Crystal data top
C24H33N3O3S | F(000) = 1904 |
Mr = 443.59 | Dx = 1.254 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9222 reflections |
a = 9.7735 (2) Å | θ = 1–27.5° |
b = 24.4098 (5) Å | µ = 0.17 mm−1 |
c = 19.7439 (5) Å | T = 123 K |
β = 93.865 (1)° | Plate, yellow |
V = 4699.57 (18) Å3 | 0.50 × 0.40 × 0.20 mm |
Z = 8 | |
Data collection top
Nonius KappaCCD diffractometer | 6646 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.052 |
Graphite monochromator | θmax = 27.5°, θmin = 2.9° |
rotation in phi and ω, 1 deg. scans | h = −12→10 |
28911 measured reflections | k = −31→29 |
10616 independent reflections | l = −25→22 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.97 | w = 1/[σ2(Fo2) + (0.0609P)2] where P = (Fo2 + 2Fc2)/3 |
10616 reflections | (Δ/σ)max = 0.001 |
565 parameters | Δρmax = 0.51 e Å−3 |
2 restraints | Δρmin = −0.29 e Å−3 |
Crystal data top
C24H33N3O3S | V = 4699.57 (18) Å3 |
Mr = 443.59 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.7735 (2) Å | µ = 0.17 mm−1 |
b = 24.4098 (5) Å | T = 123 K |
c = 19.7439 (5) Å | 0.50 × 0.40 × 0.20 mm |
β = 93.865 (1)° | |
Data collection top
Nonius KappaCCD diffractometer | 6646 reflections with I > 2σ(I) |
28911 measured reflections | Rint = 0.052 |
10616 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.051 | 2 restraints |
wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.97 | Δρmax = 0.51 e Å−3 |
10616 reflections | Δρmin = −0.29 e Å−3 |
565 parameters | |
Special details top
Experimental. dx = 40 mm, 40 sec./°., 1 °., 3 sets, 259 frames, mos.= 0.624 (2) °. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.22311 (5) | 0.50862 (2) | 0.38653 (2) | 0.02217 (13) | |
C2 | 0.12730 (18) | 0.49062 (8) | 0.31313 (9) | 0.0188 (4) | |
N2 | 0.09788 (16) | 0.43718 (7) | 0.29608 (8) | 0.0221 (4) | |
H2 | 0.0534 (18) | 0.4349 (9) | 0.2559 (8) | 0.027* | |
C21 | 0.14393 (18) | 0.39301 (9) | 0.33441 (10) | 0.0220 (5) | |
O21 | 0.20740 (13) | 0.40003 (6) | 0.38997 (7) | 0.0279 (4) | |
N21 | 0.11828 (16) | 0.34242 (7) | 0.30793 (8) | 0.0245 (4) | |
C22 | 0.03758 (19) | 0.33253 (9) | 0.24385 (10) | 0.0253 (5) | |
H22A | 0.0644 | 0.2966 | 0.2256 | 0.030* | |
H22B | 0.0607 | 0.3610 | 0.2108 | 0.030* | |
C23 | −0.11590 (19) | 0.33277 (10) | 0.24981 (11) | 0.0329 (6) | |
H23A | −0.1626 | 0.3258 | 0.2051 | 0.049* | |
H23B | −0.1442 | 0.3685 | 0.2665 | 0.049* | |
H23C | −0.1404 | 0.3041 | 0.2816 | 0.049* | |
C24 | 0.1628 (2) | 0.29592 (9) | 0.35058 (11) | 0.0285 (5) | |
H24A | 0.2574 | 0.3028 | 0.3698 | 0.034* | |
H24B | 0.1650 | 0.2628 | 0.3218 | 0.034* | |
C25 | 0.0720 (2) | 0.28478 (9) | 0.40837 (11) | 0.0315 (5) | |
H25A | 0.1080 | 0.2533 | 0.4348 | 0.047* | |
H25B | −0.0214 | 0.2767 | 0.3899 | 0.047* | |
H25C | 0.0708 | 0.3171 | 0.4378 | 0.047* | |
C3 | 0.08733 (18) | 0.53602 (8) | 0.27429 (9) | 0.0184 (4) | |
C31 | 0.00558 (18) | 0.52884 (9) | 0.21049 (10) | 0.0210 (5) | |
O31 | −0.02886 (14) | 0.48435 (6) | 0.18620 (7) | 0.0275 (3) | |
O32 | −0.02791 (13) | 0.57687 (6) | 0.18056 (6) | 0.0229 (3) | |
C32 | −0.10338 (19) | 0.57932 (9) | 0.11324 (10) | 0.0224 (5) | |
C33 | −0.0192 (2) | 0.55384 (10) | 0.06002 (10) | 0.0323 (5) | |
H33A | −0.0103 | 0.5144 | 0.0684 | 0.049* | |
H33B | 0.0720 | 0.5706 | 0.0622 | 0.049* | |
H33C | −0.0648 | 0.5600 | 0.0149 | 0.049* | |
C34 | −0.1183 (2) | 0.64031 (9) | 0.10211 (11) | 0.0348 (6) | |
H34A | −0.1727 | 0.6560 | 0.1373 | 0.052* | |
H34B | −0.1645 | 0.6472 | 0.0573 | 0.052* | |
H34C | −0.0273 | 0.6574 | 0.1046 | 0.052* | |
C35 | −0.24315 (19) | 0.55211 (10) | 0.11548 (11) | 0.0316 (5) | |
H35A | −0.2310 | 0.5127 | 0.1229 | 0.047* | |
H35B | −0.2965 | 0.5583 | 0.0723 | 0.047* | |
H35C | −0.2919 | 0.5679 | 0.1526 | 0.047* | |
C3A | 0.13883 (18) | 0.58655 (8) | 0.30497 (9) | 0.0184 (4) | |
C4 | 0.12217 (19) | 0.64456 (8) | 0.27978 (10) | 0.0224 (5) | |
H4A | 0.0287 | 0.6578 | 0.2875 | 0.027* | |
H4B | 0.1339 | 0.6457 | 0.2304 | 0.027* | |
C5 | 0.22819 (19) | 0.68184 (9) | 0.31692 (10) | 0.0230 (5) | |
H5A | 0.3203 | 0.6736 | 0.3015 | 0.028* | |
H5B | 0.2065 | 0.7205 | 0.3057 | 0.028* | |
N6 | 0.22943 (15) | 0.67409 (7) | 0.39068 (8) | 0.0210 (4) | |
C61 | 0.31554 (19) | 0.71516 (8) | 0.42705 (10) | 0.0241 (5) | |
H61A | 0.4064 | 0.7158 | 0.4077 | 0.029* | |
H61B | 0.3297 | 0.7040 | 0.4752 | 0.029* | |
C62 | 0.25617 (19) | 0.77208 (9) | 0.42382 (9) | 0.0207 (4) | |
C63 | 0.33997 (19) | 0.81726 (9) | 0.41611 (10) | 0.0228 (5) | |
H63 | 0.4347 | 0.8118 | 0.4102 | 0.027* | |
C64 | 0.2882 (2) | 0.87014 (9) | 0.41688 (10) | 0.0275 (5) | |
H64 | 0.3476 | 0.9005 | 0.4121 | 0.033* | |
C65 | 0.1506 (2) | 0.87856 (9) | 0.42453 (10) | 0.0295 (5) | |
H65 | 0.1145 | 0.9147 | 0.4243 | 0.035* | |
C66 | 0.0654 (2) | 0.83407 (10) | 0.43247 (10) | 0.0287 (5) | |
H66 | −0.0293 | 0.8397 | 0.4381 | 0.034* | |
C67 | 0.11771 (19) | 0.78111 (9) | 0.43224 (10) | 0.0240 (5) | |
H67 | 0.0585 | 0.7508 | 0.4379 | 0.029* | |
C7 | 0.28340 (19) | 0.61963 (8) | 0.40883 (10) | 0.0241 (5) | |
H7A | 0.2688 | 0.6118 | 0.4570 | 0.029* | |
H7B | 0.3832 | 0.6186 | 0.4031 | 0.029* | |
C7A | 0.21248 (18) | 0.57710 (9) | 0.36460 (10) | 0.0213 (5) | |
S1' | 0.26646 (5) | 0.25753 (2) | 0.09285 (3) | 0.02383 (14) | |
C2' | 0.35061 (18) | 0.27771 (9) | 0.16840 (10) | 0.0203 (4) | |
N2' | 0.37412 (16) | 0.33189 (7) | 0.18532 (9) | 0.0221 (4) | |
H2' | 0.4126 (18) | 0.3366 (9) | 0.2259 (8) | 0.027* | |
C21' | 0.33013 (19) | 0.37565 (9) | 0.14570 (11) | 0.0246 (5) | |
O21' | 0.27215 (13) | 0.36837 (6) | 0.08921 (7) | 0.0305 (4) | |
N21' | 0.35199 (16) | 0.42622 (7) | 0.17308 (9) | 0.0262 (4) | |
C22' | 0.4264 (2) | 0.43664 (9) | 0.23938 (10) | 0.0280 (5) | |
H22C | 0.4064 | 0.4065 | 0.2708 | 0.034* | |
H22D | 0.3916 | 0.4710 | 0.2585 | 0.034* | |
C23' | 0.5795 (2) | 0.44123 (11) | 0.23601 (11) | 0.0411 (6) | |
H23D | 0.6221 | 0.4481 | 0.2816 | 0.062* | |
H23E | 0.6007 | 0.4716 | 0.2060 | 0.062* | |
H23F | 0.6155 | 0.4070 | 0.2183 | 0.062* | |
C24' | 0.3040 (2) | 0.47287 (9) | 0.13086 (11) | 0.0322 (5) | |
H24C | 0.2970 | 0.5055 | 0.1602 | 0.039* | |
H24D | 0.2109 | 0.4646 | 0.1105 | 0.039* | |
C25' | 0.3957 (2) | 0.48634 (10) | 0.07482 (11) | 0.0371 (6) | |
H25D | 0.3583 | 0.5179 | 0.0490 | 0.056* | |
H25E | 0.4007 | 0.4547 | 0.0445 | 0.056* | |
H25F | 0.4878 | 0.4952 | 0.0945 | 0.056* | |
C3' | 0.39015 (18) | 0.23366 (9) | 0.20913 (10) | 0.0209 (5) | |
C31' | 0.46682 (19) | 0.24265 (9) | 0.27454 (10) | 0.0234 (5) | |
O31' | 0.49274 (13) | 0.28790 (6) | 0.29859 (7) | 0.0287 (4) | |
O32' | 0.50591 (13) | 0.19556 (6) | 0.30506 (7) | 0.0264 (3) | |
C32' | 0.57434 (19) | 0.19510 (9) | 0.37424 (10) | 0.0258 (5) | |
C33' | 0.70977 (18) | 0.22647 (9) | 0.37673 (10) | 0.0277 (5) | |
H33D | 0.6914 | 0.2655 | 0.3688 | 0.042* | |
H33E | 0.7666 | 0.2124 | 0.3416 | 0.042* | |
H33F | 0.7582 | 0.2216 | 0.4214 | 0.042* | |
C34' | 0.4774 (2) | 0.21862 (10) | 0.42415 (10) | 0.0349 (6) | |
H34D | 0.4630 | 0.2577 | 0.4148 | 0.052* | |
H34E | 0.5177 | 0.2139 | 0.4706 | 0.052* | |
H34F | 0.3894 | 0.1994 | 0.4191 | 0.052* | |
C35' | 0.6000 (2) | 0.13466 (10) | 0.38634 (12) | 0.0392 (6) | |
H35D | 0.5122 | 0.1151 | 0.3843 | 0.059* | |
H35E | 0.6473 | 0.1294 | 0.4312 | 0.059* | |
H35F | 0.6569 | 0.1203 | 0.3514 | 0.059* | |
C3A' | 0.34624 (18) | 0.18201 (8) | 0.17856 (10) | 0.0203 (4) | |
C4' | 0.3600 (2) | 0.12545 (8) | 0.20794 (10) | 0.0236 (5) | |
H4'1 | 0.3416 | 0.1264 | 0.2566 | 0.028* | |
H4'2 | 0.4547 | 0.1120 | 0.2042 | 0.028* | |
C5' | 0.25900 (19) | 0.08669 (9) | 0.17014 (10) | 0.0238 (5) | |
H5'1 | 0.2791 | 0.0485 | 0.1846 | 0.029* | |
H5'2 | 0.1645 | 0.0956 | 0.1817 | 0.029* | |
N6' | 0.26842 (15) | 0.09128 (7) | 0.09670 (8) | 0.0223 (4) | |
C61' | 0.19034 (19) | 0.04783 (9) | 0.06019 (10) | 0.0251 (5) | |
H61C | 0.1850 | 0.0561 | 0.0110 | 0.030* | |
H61D | 0.0957 | 0.0475 | 0.0751 | 0.030* | |
C62' | 0.25277 (19) | −0.00810 (9) | 0.07156 (10) | 0.0219 (5) | |
C63' | 0.39345 (19) | −0.01599 (9) | 0.06918 (10) | 0.0243 (5) | |
H63' | 0.4507 | 0.0144 | 0.0610 | 0.029* | |
C64' | 0.4511 (2) | −0.06727 (9) | 0.07842 (10) | 0.0266 (5) | |
H64' | 0.5472 | −0.0719 | 0.0762 | 0.032* | |
C65' | 0.3693 (2) | −0.11202 (9) | 0.09088 (10) | 0.0287 (5) | |
H65' | 0.4091 | −0.1472 | 0.0982 | 0.034* | |
C66' | 0.2296 (2) | −0.10496 (10) | 0.09253 (10) | 0.0308 (5) | |
H66' | 0.1727 | −0.1356 | 0.1003 | 0.037* | |
C67' | 0.1715 (2) | −0.05340 (9) | 0.08288 (10) | 0.0267 (5) | |
H67' | 0.0750 | −0.0491 | 0.0840 | 0.032* | |
C7' | 0.2178 (2) | 0.14467 (9) | 0.07285 (10) | 0.0255 (5) | |
H7'1 | 0.1168 | 0.1458 | 0.0739 | 0.031* | |
H7'2 | 0.2412 | 0.1503 | 0.0253 | 0.031* | |
C7A' | 0.28013 (18) | 0.18939 (9) | 0.11657 (10) | 0.0215 (5) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0260 (3) | 0.0176 (3) | 0.0223 (3) | −0.0004 (2) | −0.0030 (2) | 0.0013 (2) |
C2 | 0.0175 (9) | 0.0165 (11) | 0.0225 (11) | −0.0016 (8) | 0.0023 (8) | 0.0000 (9) |
N2 | 0.0272 (9) | 0.0162 (10) | 0.0225 (9) | −0.0011 (8) | −0.0021 (7) | −0.0002 (8) |
C21 | 0.0179 (10) | 0.0201 (13) | 0.0281 (12) | 0.0003 (9) | 0.0016 (8) | 0.0012 (10) |
O21 | 0.0298 (8) | 0.0236 (9) | 0.0293 (8) | −0.0015 (6) | −0.0070 (6) | 0.0021 (7) |
N21 | 0.0294 (9) | 0.0160 (10) | 0.0275 (10) | −0.0002 (8) | −0.0017 (7) | −0.0009 (8) |
C22 | 0.0331 (11) | 0.0196 (13) | 0.0232 (11) | 0.0003 (9) | 0.0009 (9) | −0.0042 (9) |
C23 | 0.0331 (12) | 0.0409 (16) | 0.0241 (12) | −0.0063 (11) | −0.0020 (9) | 0.0003 (11) |
C24 | 0.0312 (11) | 0.0147 (12) | 0.0387 (13) | 0.0057 (9) | −0.0038 (10) | 0.0013 (10) |
C25 | 0.0351 (12) | 0.0221 (14) | 0.0360 (13) | −0.0024 (10) | −0.0066 (10) | 0.0031 (11) |
C3 | 0.0198 (9) | 0.0173 (12) | 0.0179 (10) | 0.0004 (8) | 0.0012 (8) | −0.0001 (9) |
C31 | 0.0229 (10) | 0.0187 (12) | 0.0217 (11) | 0.0006 (9) | 0.0031 (8) | 0.0001 (9) |
O31 | 0.0403 (8) | 0.0154 (9) | 0.0255 (8) | −0.0026 (7) | −0.0063 (6) | −0.0007 (7) |
O32 | 0.0296 (7) | 0.0165 (8) | 0.0214 (7) | 0.0006 (6) | −0.0076 (6) | 0.0005 (6) |
C32 | 0.0261 (10) | 0.0203 (12) | 0.0199 (10) | 0.0012 (9) | −0.0057 (8) | −0.0004 (9) |
C33 | 0.0397 (12) | 0.0325 (15) | 0.0251 (12) | 0.0045 (11) | 0.0040 (9) | 0.0036 (10) |
C34 | 0.0434 (13) | 0.0250 (14) | 0.0340 (13) | 0.0050 (11) | −0.0121 (10) | 0.0037 (11) |
C35 | 0.0280 (11) | 0.0377 (16) | 0.0283 (12) | 0.0019 (10) | −0.0030 (9) | −0.0026 (11) |
C3A | 0.0199 (10) | 0.0155 (11) | 0.0198 (10) | 0.0000 (8) | 0.0022 (8) | −0.0006 (9) |
C4 | 0.0289 (11) | 0.0180 (12) | 0.0198 (10) | −0.0023 (9) | −0.0025 (8) | 0.0027 (9) |
C5 | 0.0271 (10) | 0.0196 (12) | 0.0220 (11) | −0.0028 (9) | 0.0003 (8) | 0.0012 (9) |
N6 | 0.0261 (9) | 0.0166 (10) | 0.0196 (9) | −0.0022 (7) | −0.0028 (7) | −0.0012 (7) |
C61 | 0.0252 (10) | 0.0200 (13) | 0.0263 (11) | −0.0002 (9) | −0.0031 (8) | −0.0031 (10) |
C62 | 0.0253 (10) | 0.0203 (12) | 0.0161 (10) | −0.0001 (9) | −0.0013 (8) | −0.0009 (9) |
C63 | 0.0240 (10) | 0.0231 (13) | 0.0212 (11) | −0.0018 (9) | 0.0013 (8) | −0.0017 (9) |
C64 | 0.0375 (12) | 0.0203 (13) | 0.0247 (11) | −0.0047 (10) | 0.0032 (9) | −0.0010 (10) |
C65 | 0.0401 (13) | 0.0229 (13) | 0.0253 (11) | 0.0073 (10) | 0.0010 (9) | −0.0014 (10) |
C66 | 0.0272 (11) | 0.0316 (15) | 0.0272 (12) | 0.0042 (10) | 0.0012 (9) | −0.0042 (10) |
C67 | 0.0275 (11) | 0.0221 (13) | 0.0224 (11) | −0.0031 (9) | 0.0000 (8) | 0.0003 (10) |
C7 | 0.0279 (11) | 0.0196 (12) | 0.0242 (11) | −0.0004 (9) | −0.0035 (8) | −0.0001 (9) |
C7A | 0.0232 (10) | 0.0177 (12) | 0.0230 (11) | −0.0004 (9) | 0.0007 (8) | 0.0014 (9) |
S1' | 0.0251 (3) | 0.0198 (3) | 0.0257 (3) | −0.0006 (2) | −0.0045 (2) | −0.0002 (2) |
C2' | 0.0191 (10) | 0.0190 (12) | 0.0231 (11) | −0.0028 (9) | 0.0025 (8) | −0.0025 (9) |
N2' | 0.0259 (9) | 0.0164 (10) | 0.0238 (9) | −0.0025 (8) | −0.0007 (7) | −0.0003 (8) |
C21' | 0.0212 (10) | 0.0196 (13) | 0.0334 (12) | −0.0028 (9) | 0.0042 (9) | 0.0001 (10) |
O21' | 0.0319 (8) | 0.0274 (10) | 0.0309 (8) | −0.0038 (7) | −0.0078 (6) | 0.0010 (7) |
N21' | 0.0310 (9) | 0.0168 (10) | 0.0306 (10) | 0.0005 (8) | 0.0008 (7) | −0.0005 (8) |
C22' | 0.0348 (12) | 0.0224 (13) | 0.0274 (12) | −0.0018 (10) | 0.0064 (9) | −0.0059 (10) |
C23' | 0.0373 (13) | 0.0572 (19) | 0.0284 (13) | −0.0051 (12) | 0.0000 (10) | −0.0019 (12) |
C24' | 0.0337 (12) | 0.0192 (13) | 0.0430 (14) | 0.0041 (10) | −0.0018 (10) | −0.0008 (11) |
C25' | 0.0467 (14) | 0.0287 (15) | 0.0348 (13) | −0.0030 (11) | −0.0056 (11) | 0.0052 (11) |
C3' | 0.0217 (10) | 0.0190 (12) | 0.0219 (11) | −0.0010 (9) | 0.0022 (8) | −0.0017 (9) |
C31' | 0.0241 (10) | 0.0238 (13) | 0.0226 (11) | −0.0031 (9) | 0.0028 (8) | −0.0002 (10) |
O31' | 0.0374 (8) | 0.0207 (9) | 0.0271 (8) | −0.0040 (7) | −0.0047 (6) | −0.0049 (7) |
O32' | 0.0317 (8) | 0.0222 (9) | 0.0239 (8) | −0.0042 (7) | −0.0083 (6) | −0.0008 (7) |
C32' | 0.0278 (11) | 0.0270 (13) | 0.0213 (11) | −0.0030 (10) | −0.0090 (8) | 0.0002 (10) |
C33' | 0.0234 (10) | 0.0328 (14) | 0.0266 (11) | −0.0028 (10) | −0.0001 (9) | −0.0017 (10) |
C34' | 0.0275 (11) | 0.0522 (18) | 0.0245 (12) | −0.0051 (11) | −0.0016 (9) | 0.0060 (11) |
C35' | 0.0443 (14) | 0.0296 (15) | 0.0410 (14) | −0.0066 (11) | −0.0168 (11) | 0.0072 (12) |
C3A' | 0.0206 (10) | 0.0169 (12) | 0.0233 (11) | −0.0028 (9) | 0.0016 (8) | −0.0017 (9) |
C4' | 0.0292 (11) | 0.0195 (12) | 0.0219 (11) | −0.0036 (9) | −0.0003 (8) | −0.0007 (9) |
C5' | 0.0271 (11) | 0.0209 (12) | 0.0235 (11) | −0.0029 (9) | 0.0022 (8) | −0.0008 (9) |
N6' | 0.0254 (9) | 0.0194 (10) | 0.0216 (9) | −0.0009 (7) | −0.0016 (7) | −0.0028 (8) |
C61' | 0.0250 (10) | 0.0215 (13) | 0.0280 (12) | −0.0012 (9) | −0.0042 (9) | −0.0039 (10) |
C62' | 0.0259 (10) | 0.0214 (12) | 0.0183 (10) | −0.0031 (9) | 0.0005 (8) | −0.0022 (9) |
C63' | 0.0254 (11) | 0.0218 (13) | 0.0256 (11) | −0.0061 (9) | 0.0004 (8) | −0.0014 (10) |
C64' | 0.0233 (11) | 0.0272 (14) | 0.0287 (12) | 0.0025 (10) | −0.0031 (9) | −0.0005 (10) |
C65' | 0.0420 (13) | 0.0200 (13) | 0.0234 (11) | 0.0044 (10) | −0.0036 (9) | −0.0001 (10) |
C66' | 0.0400 (13) | 0.0271 (14) | 0.0257 (12) | −0.0088 (11) | 0.0044 (9) | −0.0001 (10) |
C67' | 0.0252 (11) | 0.0280 (14) | 0.0273 (12) | −0.0050 (10) | 0.0041 (9) | −0.0057 (10) |
C7' | 0.0268 (11) | 0.0212 (13) | 0.0277 (11) | 0.0012 (9) | −0.0039 (9) | −0.0015 (10) |
C7A' | 0.0242 (10) | 0.0161 (12) | 0.0241 (11) | 0.0000 (9) | 0.0012 (8) | 0.0001 (9) |
Geometric parameters (Å, º) top
S1—C7A | 1.728 (2) | S1'—C2' | 1.7258 (19) |
S1—C2 | 1.7284 (19) | S1'—C7A' | 1.731 (2) |
C2—N2 | 1.373 (2) | C2'—N2' | 1.380 (2) |
C2—C3 | 1.389 (3) | C2'—C3' | 1.382 (3) |
N2—C21 | 1.376 (3) | N2'—C21' | 1.376 (3) |
N2—H2 | 0.881 (14) | N2'—H2' | 0.870 (14) |
C21—O21 | 1.235 (2) | C21'—O21' | 1.229 (2) |
C21—N21 | 1.358 (2) | C21'—N21' | 1.359 (3) |
N21—C24 | 1.462 (2) | N21'—C24' | 1.469 (3) |
N21—C22 | 1.465 (2) | N21'—C22' | 1.476 (2) |
C22—C23 | 1.512 (3) | C22'—C23' | 1.506 (3) |
C22—H22A | 0.9900 | C22'—H22C | 0.9900 |
C22—H22B | 0.9900 | C22'—H22D | 0.9900 |
C23—H23A | 0.9800 | C23'—H23D | 0.9800 |
C23—H23B | 0.9800 | C23'—H23E | 0.9800 |
C23—H23C | 0.9800 | C23'—H23F | 0.9800 |
C24—C25 | 1.516 (3) | C24'—C25' | 1.507 (3) |
C24—H24A | 0.9900 | C24'—H24C | 0.9900 |
C24—H24B | 0.9900 | C24'—H24D | 0.9900 |
C25—H25A | 0.9800 | C25'—H25D | 0.9800 |
C25—H25B | 0.9800 | C25'—H25E | 0.9800 |
C25—H25C | 0.9800 | C25'—H25F | 0.9800 |
C3—C3A | 1.449 (3) | C3'—C3A' | 1.450 (3) |
C3—C31 | 1.456 (3) | C3'—C31' | 1.465 (3) |
C31—O31 | 1.225 (2) | C31'—O31' | 1.222 (2) |
C31—O32 | 1.343 (2) | C31'—O32' | 1.341 (2) |
O32—C32 | 1.477 (2) | O32'—C32' | 1.480 (2) |
C32—C34 | 1.510 (3) | C32'—C35' | 1.513 (3) |
C32—C33 | 1.511 (3) | C32'—C34' | 1.524 (3) |
C32—C35 | 1.522 (3) | C32'—C33' | 1.527 (3) |
C33—H33A | 0.9800 | C33'—H33D | 0.9800 |
C33—H33B | 0.9800 | C33'—H33E | 0.9800 |
C33—H33C | 0.9800 | C33'—H33F | 0.9800 |
C34—H34A | 0.9800 | C34'—H34D | 0.9800 |
C34—H34B | 0.9800 | C34'—H34E | 0.9800 |
C34—H34C | 0.9800 | C34'—H34F | 0.9800 |
C35—H35A | 0.9800 | C35'—H35D | 0.9800 |
C35—H35B | 0.9800 | C35'—H35E | 0.9800 |
C35—H35C | 0.9800 | C35'—H35F | 0.9800 |
C3A—C7A | 1.358 (2) | C3A'—C7A' | 1.357 (3) |
C3A—C4 | 1.506 (3) | C3A'—C4' | 1.500 (3) |
C4—C5 | 1.529 (3) | C4'—C5' | 1.525 (3) |
C4—H4A | 0.9900 | C4'—H4'1 | 0.9900 |
C4—H4B | 0.9900 | C4'—H4'2 | 0.9900 |
C5—N6 | 1.468 (2) | C5'—N6' | 1.463 (2) |
C5—H5A | 0.9900 | C5'—H5'1 | 0.9900 |
C5—H5B | 0.9900 | C5'—H5'2 | 0.9900 |
N6—C61 | 1.465 (2) | N6'—C7' | 1.461 (2) |
N6—C7 | 1.466 (2) | N6'—C61' | 1.467 (2) |
C61—C62 | 1.506 (3) | C61'—C62' | 1.506 (3) |
C61—H61A | 0.9900 | C61'—H61C | 0.9900 |
C61—H61B | 0.9900 | C61'—H61D | 0.9900 |
C62—C63 | 1.388 (3) | C62'—C67' | 1.389 (3) |
C62—C67 | 1.392 (3) | C62'—C63' | 1.392 (3) |
C63—C64 | 1.387 (3) | C63'—C64' | 1.380 (3) |
C63—H63 | 0.9500 | C63'—H63' | 0.9500 |
C64—C65 | 1.379 (3) | C64'—C65' | 1.385 (3) |
C64—H64 | 0.9500 | C64'—H64' | 0.9500 |
C65—C66 | 1.384 (3) | C65'—C66' | 1.379 (3) |
C65—H65 | 0.9500 | C65'—H65' | 0.9500 |
C66—C67 | 1.390 (3) | C66'—C67' | 1.389 (3) |
C66—H66 | 0.9500 | C66'—H66' | 0.9500 |
C67—H67 | 0.9500 | C67'—H67' | 0.9500 |
C7—C7A | 1.496 (3) | C7'—C7A' | 1.495 (3) |
C7—H7A | 0.9900 | C7'—H7'1 | 0.9900 |
C7—H7B | 0.9900 | C7'—H7'2 | 0.9900 |
| | | |
C7A—S1—C2 | 90.91 (9) | C2'—S1'—C7A' | 90.97 (10) |
N2—C2—C3 | 125.19 (17) | N2'—C2'—C3' | 124.70 (18) |
N2—C2—S1 | 122.69 (15) | N2'—C2'—S1' | 123.01 (15) |
C3—C2—S1 | 112.11 (15) | C3'—C2'—S1' | 112.28 (15) |
C2—N2—C21 | 123.67 (17) | C21'—N2'—C2' | 124.48 (17) |
C2—N2—H2 | 111.3 (14) | C21'—N2'—H2' | 121.4 (14) |
C21—N2—H2 | 124.8 (14) | C2'—N2'—H2' | 113.8 (14) |
O21—C21—N21 | 122.46 (19) | O21'—C21'—N21' | 122.9 (2) |
O21—C21—N2 | 120.40 (19) | O21'—C21'—N2' | 120.7 (2) |
N21—C21—N2 | 117.13 (17) | N21'—C21'—N2' | 116.39 (18) |
C21—N21—C24 | 116.39 (16) | C21'—N21'—C24' | 116.27 (17) |
C21—N21—C22 | 123.85 (17) | C21'—N21'—C22' | 124.35 (18) |
C24—N21—C22 | 119.43 (17) | C24'—N21'—C22' | 119.28 (17) |
N21—C22—C23 | 114.28 (17) | N21'—C22'—C23' | 113.91 (17) |
N21—C22—H22A | 108.7 | N21'—C22'—H22C | 108.8 |
C23—C22—H22A | 108.7 | C23'—C22'—H22C | 108.8 |
N21—C22—H22B | 108.7 | N21'—C22'—H22D | 108.8 |
C23—C22—H22B | 108.7 | C23'—C22'—H22D | 108.8 |
H22A—C22—H22B | 107.6 | H22C—C22'—H22D | 107.7 |
C22—C23—H23A | 109.5 | C22'—C23'—H23D | 109.5 |
C22—C23—H23B | 109.5 | C22'—C23'—H23E | 109.5 |
H23A—C23—H23B | 109.5 | H23D—C23'—H23E | 109.5 |
C22—C23—H23C | 109.5 | C22'—C23'—H23F | 109.5 |
H23A—C23—H23C | 109.5 | H23D—C23'—H23F | 109.5 |
H23B—C23—H23C | 109.5 | H23E—C23'—H23F | 109.5 |
N21—C24—C25 | 113.98 (17) | N21'—C24'—C25' | 113.74 (17) |
N21—C24—H24A | 108.8 | N21'—C24'—H24C | 108.8 |
C25—C24—H24A | 108.8 | C25'—C24'—H24C | 108.8 |
N21—C24—H24B | 108.8 | N21'—C24'—H24D | 108.8 |
C25—C24—H24B | 108.8 | C25'—C24'—H24D | 108.8 |
H24A—C24—H24B | 107.7 | H24C—C24'—H24D | 107.7 |
C24—C25—H25A | 109.5 | C24'—C25'—H25D | 109.5 |
C24—C25—H25B | 109.5 | C24'—C25'—H25E | 109.5 |
H25A—C25—H25B | 109.5 | H25D—C25'—H25E | 109.5 |
C24—C25—H25C | 109.5 | C24'—C25'—H25F | 109.5 |
H25A—C25—H25C | 109.5 | H25D—C25'—H25F | 109.5 |
H25B—C25—H25C | 109.5 | H25E—C25'—H25F | 109.5 |
C2—C3—C3A | 111.81 (16) | C2'—C3'—C3A' | 111.77 (17) |
C2—C3—C31 | 119.94 (18) | C2'—C3'—C31' | 120.17 (19) |
C3A—C3—C31 | 128.24 (18) | C3A'—C3'—C31' | 128.06 (19) |
O31—C31—O32 | 123.30 (17) | O31'—C31'—O32' | 123.68 (18) |
O31—C31—C3 | 124.45 (19) | O31'—C31'—C3' | 123.9 (2) |
O32—C31—C3 | 112.25 (17) | O32'—C31'—C3' | 112.38 (18) |
C31—O32—C32 | 121.55 (15) | C31'—O32'—C32' | 121.24 (16) |
O32—C32—C34 | 102.01 (15) | O32'—C32'—C35' | 102.30 (16) |
O32—C32—C33 | 110.30 (15) | O32'—C32'—C34' | 109.39 (15) |
C34—C32—C33 | 110.86 (18) | C35'—C32'—C34' | 111.64 (19) |
O32—C32—C35 | 110.54 (16) | O32'—C32'—C33' | 111.27 (16) |
C34—C32—C35 | 110.88 (17) | C35'—C32'—C33' | 110.49 (17) |
C33—C32—C35 | 111.85 (18) | C34'—C32'—C33' | 111.41 (18) |
C32—C33—H33A | 109.5 | C32'—C33'—H33D | 109.5 |
C32—C33—H33B | 109.5 | C32'—C33'—H33E | 109.5 |
H33A—C33—H33B | 109.5 | H33D—C33'—H33E | 109.5 |
C32—C33—H33C | 109.5 | C32'—C33'—H33F | 109.5 |
H33A—C33—H33C | 109.5 | H33D—C33'—H33F | 109.5 |
H33B—C33—H33C | 109.5 | H33E—C33'—H33F | 109.5 |
C32—C34—H34A | 109.5 | C32'—C34'—H34D | 109.5 |
C32—C34—H34B | 109.5 | C32'—C34'—H34E | 109.5 |
H34A—C34—H34B | 109.5 | H34D—C34'—H34E | 109.5 |
C32—C34—H34C | 109.5 | C32'—C34'—H34F | 109.5 |
H34A—C34—H34C | 109.5 | H34D—C34'—H34F | 109.5 |
H34B—C34—H34C | 109.5 | H34E—C34'—H34F | 109.5 |
C32—C35—H35A | 109.5 | C32'—C35'—H35D | 109.5 |
C32—C35—H35B | 109.5 | C32'—C35'—H35E | 109.5 |
H35A—C35—H35B | 109.5 | H35D—C35'—H35E | 109.5 |
C32—C35—H35C | 109.5 | C32'—C35'—H35F | 109.5 |
H35A—C35—H35C | 109.5 | H35D—C35'—H35F | 109.5 |
H35B—C35—H35C | 109.5 | H35E—C35'—H35F | 109.5 |
C7A—C3A—C3 | 111.52 (18) | C7A'—C3A'—C3' | 111.70 (18) |
C7A—C3A—C4 | 119.03 (17) | C7A'—C3A'—C4' | 119.71 (18) |
C3—C3A—C4 | 129.44 (16) | C3'—C3A'—C4' | 128.54 (17) |
C3A—C4—C5 | 110.27 (15) | C3A'—C4'—C5' | 110.10 (16) |
C3A—C4—H4A | 109.6 | C3A'—C4'—H4'1 | 109.6 |
C5—C4—H4A | 109.6 | C5'—C4'—H4'1 | 109.6 |
C3A—C4—H4B | 109.6 | C3A'—C4'—H4'2 | 109.6 |
C5—C4—H4B | 109.6 | C5'—C4'—H4'2 | 109.6 |
H4A—C4—H4B | 108.1 | H4'1—C4'—H4'2 | 108.2 |
N6—C5—C4 | 111.06 (16) | N6'—C5'—C4' | 110.82 (16) |
N6—C5—H5A | 109.4 | N6'—C5'—H5'1 | 109.5 |
C4—C5—H5A | 109.4 | C4'—C5'—H5'1 | 109.5 |
N6—C5—H5B | 109.4 | N6'—C5'—H5'2 | 109.5 |
C4—C5—H5B | 109.4 | C4'—C5'—H5'2 | 109.5 |
H5A—C5—H5B | 108.0 | H5'1—C5'—H5'2 | 108.1 |
C61—N6—C7 | 108.38 (14) | C7'—N6'—C5' | 110.19 (16) |
C61—N6—C5 | 111.36 (15) | C7'—N6'—C61' | 109.45 (14) |
C7—N6—C5 | 109.77 (16) | C5'—N6'—C61' | 111.48 (16) |
N6—C61—C62 | 113.81 (15) | N6'—C61'—C62' | 112.95 (15) |
N6—C61—H61A | 108.8 | N6'—C61'—H61C | 109.0 |
C62—C61—H61A | 108.8 | C62'—C61'—H61C | 109.0 |
N6—C61—H61B | 108.8 | N6'—C61'—H61D | 109.0 |
C62—C61—H61B | 108.8 | C62'—C61'—H61D | 109.0 |
H61A—C61—H61B | 107.7 | H61C—C61'—H61D | 107.8 |
C63—C62—C67 | 118.22 (19) | C67'—C62'—C63' | 118.2 (2) |
C63—C62—C61 | 120.61 (17) | C67'—C62'—C61' | 121.03 (17) |
C67—C62—C61 | 121.07 (18) | C63'—C62'—C61' | 120.76 (18) |
C64—C63—C62 | 121.34 (19) | C64'—C63'—C62' | 121.10 (19) |
C64—C63—H63 | 119.3 | C64'—C63'—H63' | 119.5 |
C62—C63—H63 | 119.3 | C62'—C63'—H63' | 119.5 |
C65—C64—C63 | 119.9 (2) | C63'—C64'—C65' | 120.23 (19) |
C65—C64—H64 | 120.0 | C63'—C64'—H64' | 119.9 |
C63—C64—H64 | 120.0 | C65'—C64'—H64' | 119.9 |
C64—C65—C66 | 119.6 (2) | C66'—C65'—C64' | 119.3 (2) |
C64—C65—H65 | 120.2 | C66'—C65'—H65' | 120.3 |
C66—C65—H65 | 120.2 | C64'—C65'—H65' | 120.3 |
C65—C66—C67 | 120.35 (19) | C65'—C66'—C67' | 120.4 (2) |
C65—C66—H66 | 119.8 | C65'—C66'—H66' | 119.8 |
C67—C66—H66 | 119.8 | C67'—C66'—H66' | 119.8 |
C66—C67—C62 | 120.5 (2) | C66'—C67'—C62' | 120.71 (19) |
C66—C67—H67 | 119.7 | C66'—C67'—H67' | 119.6 |
C62—C67—H67 | 119.7 | C62'—C67'—H67' | 119.6 |
N6—C7—C7A | 109.97 (15) | N6'—C7'—C7A' | 110.45 (16) |
N6—C7—H7A | 109.7 | N6'—C7'—H7'1 | 109.6 |
C7A—C7—H7A | 109.7 | C7A'—C7'—H7'1 | 109.6 |
N6—C7—H7B | 109.7 | N6'—C7'—H7'2 | 109.6 |
C7A—C7—H7B | 109.7 | C7A'—C7'—H7'2 | 109.6 |
H7A—C7—H7B | 108.2 | H7'1—C7'—H7'2 | 108.1 |
C3A—C7A—C7 | 125.87 (19) | C3A'—C7A'—C7' | 125.06 (19) |
C3A—C7A—S1 | 113.64 (15) | C3A'—C7A'—S1' | 113.26 (16) |
C7—C7A—S1 | 120.47 (14) | C7'—C7A'—S1' | 121.63 (14) |
| | | |
C7A—S1—C2—N2 | 177.95 (16) | C7A'—S1'—C2'—N2' | −178.31 (16) |
C7A—S1—C2—C3 | −1.01 (15) | C7A'—S1'—C2'—C3' | 1.41 (15) |
C3—C2—N2—C21 | 177.20 (18) | C3'—C2'—N2'—C21' | −177.49 (18) |
S1—C2—N2—C21 | −1.6 (3) | S1'—C2'—N2'—C21' | 2.2 (3) |
C2—N2—C21—O21 | 5.4 (3) | C2'—N2'—C21'—O21' | −4.3 (3) |
C2—N2—C21—N21 | −173.60 (17) | C2'—N2'—C21'—N21' | 174.37 (17) |
O21—C21—N21—C24 | 3.5 (3) | O21'—C21'—N21'—C24' | −0.9 (3) |
N2—C21—N21—C24 | −177.48 (16) | N2'—C21'—N21'—C24' | −179.55 (16) |
O21—C21—N21—C22 | 176.85 (17) | O21'—C21'—N21'—C22' | −177.22 (18) |
N2—C21—N21—C22 | −4.2 (3) | N2'—C21'—N21'—C22' | 4.1 (3) |
C21—N21—C22—C23 | −82.1 (2) | C21'—N21'—C22'—C23' | 86.3 (2) |
C24—N21—C22—C23 | 91.0 (2) | C24'—N21'—C22'—C23' | −90.0 (2) |
C21—N21—C24—C25 | 75.5 (2) | C21'—N21'—C24'—C25' | −76.9 (2) |
C22—N21—C24—C25 | −98.1 (2) | C22'—N21'—C24'—C25' | 99.7 (2) |
N2—C2—C3—C3A | −177.82 (17) | N2'—C2'—C3'—C3A' | 177.75 (17) |
S1—C2—C3—C3A | 1.1 (2) | S1'—C2'—C3'—C3A' | −2.0 (2) |
N2—C2—C3—C31 | 1.1 (3) | N2'—C2'—C3'—C31' | −2.2 (3) |
S1—C2—C3—C31 | −179.95 (14) | S1'—C2'—C3'—C31' | 178.12 (14) |
C2—C3—C31—O31 | −2.4 (3) | C2'—C3'—C31'—O31' | 4.5 (3) |
C3A—C3—C31—O31 | 176.38 (18) | C3A'—C3'—C31'—O31' | −175.36 (18) |
C2—C3—C31—O32 | 177.93 (16) | C2'—C3'—C31'—O32' | −175.24 (16) |
C3A—C3—C31—O32 | −3.3 (3) | C3A'—C3'—C31'—O32' | 4.9 (3) |
O31—C31—O32—C32 | −3.5 (3) | O31'—C31'—O32'—C32' | 5.5 (3) |
C3—C31—O32—C32 | 176.18 (15) | C3'—C31'—O32'—C32' | −174.77 (15) |
C31—O32—C32—C34 | 179.15 (16) | C31'—O32'—C32'—C35' | −179.24 (16) |
C31—O32—C32—C33 | −63.0 (2) | C31'—O32'—C32'—C34' | 62.3 (2) |
C31—O32—C32—C35 | 61.2 (2) | C31'—O32'—C32'—C33' | −61.2 (2) |
C2—C3—C3A—C7A | −0.6 (2) | C2'—C3'—C3A'—C7A' | 1.6 (2) |
C31—C3—C3A—C7A | −179.45 (18) | C31'—C3'—C3A'—C7A' | −178.47 (18) |
C2—C3—C3A—C4 | 178.89 (18) | C2'—C3'—C3A'—C4' | −175.48 (18) |
C31—C3—C3A—C4 | 0.1 (3) | C31'—C3'—C3A'—C4' | 4.4 (3) |
C7A—C3A—C4—C5 | 16.7 (2) | C7A'—C3A'—C4'—C5' | −16.4 (3) |
C3—C3A—C4—C5 | −162.80 (18) | C3'—C3A'—C4'—C5' | 160.47 (18) |
C3A—C4—C5—N6 | −49.7 (2) | C3A'—C4'—C5'—N6' | 49.9 (2) |
C4—C5—N6—C61 | −171.56 (16) | C4'—C5'—N6'—C7' | −68.3 (2) |
C4—C5—N6—C7 | 68.4 (2) | C4'—C5'—N6'—C61' | 169.99 (16) |
C7—N6—C61—C62 | −168.72 (16) | C7'—N6'—C61'—C62' | 168.89 (16) |
C5—N6—C61—C62 | 70.4 (2) | C5'—N6'—C61'—C62' | −68.9 (2) |
N6—C61—C62—C63 | −140.51 (18) | N6'—C61'—C62'—C67' | 137.29 (19) |
N6—C61—C62—C67 | 43.1 (3) | N6'—C61'—C62'—C63' | −44.4 (3) |
C67—C62—C63—C64 | 0.2 (3) | C67'—C62'—C63'—C64' | −0.6 (3) |
C61—C62—C63—C64 | −176.32 (17) | C61'—C62'—C63'—C64' | −178.91 (19) |
C62—C63—C64—C65 | −0.9 (3) | C62'—C63'—C64'—C65' | −0.5 (3) |
C63—C64—C65—C66 | 1.0 (3) | C63'—C64'—C65'—C66' | 1.3 (3) |
C64—C65—C66—C67 | −0.5 (3) | C64'—C65'—C66'—C67' | −1.0 (3) |
C65—C66—C67—C62 | −0.2 (3) | C65'—C66'—C67'—C62' | −0.1 (3) |
C63—C62—C67—C66 | 0.4 (3) | C63'—C62'—C67'—C66' | 0.9 (3) |
C61—C62—C67—C66 | 176.83 (18) | C61'—C62'—C67'—C66' | 179.23 (18) |
C61—N6—C7—C7A | −171.03 (16) | C5'—N6'—C7'—C7A' | 48.2 (2) |
C5—N6—C7—C7A | −49.2 (2) | C61'—N6'—C7'—C7A' | 171.12 (16) |
C3—C3A—C7A—C7 | 178.35 (17) | C3'—C3A'—C7A'—C7' | −177.75 (17) |
C4—C3A—C7A—C7 | −1.2 (3) | C4'—C3A'—C7A'—C7' | −0.4 (3) |
C3—C3A—C7A—S1 | −0.1 (2) | C3'—C3A'—C7A'—S1' | −0.6 (2) |
C4—C3A—C7A—S1 | −179.71 (13) | C4'—C3A'—C7A'—S1' | 176.83 (14) |
N6—C7—C7A—C3A | 17.3 (3) | N6'—C7'—C7A'—C3A' | −15.2 (3) |
N6—C7—C7A—S1 | −164.33 (13) | N6'—C7'—C7A'—S1' | 167.81 (13) |
C2—S1—C7A—C3A | 0.66 (16) | C2'—S1'—C7A'—C3A' | −0.47 (16) |
C2—S1—C7A—C7 | −177.93 (16) | C2'—S1'—C7A'—C7' | 176.84 (16) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O31 | 0.88 (1) | 1.96 (2) | 2.684 (2) | 138 (2) |
N2′—H2′···O31′ | 0.87 (1) | 1.98 (2) | 2.674 (2) | 136 (2) |
C64′—H64′···O21i | 0.95 | 2.54 | 3.448 (2) | 160 |
C66—H66···O21′ii | 0.95 | 2.50 | 3.403 (2) | 159 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x, y+1/2, −z+1/2. |
(II) 7-Benzyl-2-diethylamino-5,6,7,8-tetrahydro-3-oxa-9-thia-1,7-diazafluoren-4-one
top
Crystal data top
C20H23N3O2S | F(000) = 784 |
Mr = 369.47 | Dx = 1.308 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3312 reflections |
a = 12.0595 (4) Å | θ = 1–27.5° |
b = 8.9892 (3) Å | µ = 0.19 mm−1 |
c = 18.0483 (6) Å | T = 123 K |
β = 106.503 (1)° | Block, yellow |
V = 1875.93 (11) Å3 | 0.60 × 0.50 × 0.30 mm |
Z = 4 | |
Data collection top
Nonius KappaCCD diffractometer | 3374 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.026 |
Graphite monochromator | θmax = 27.5°, θmin = 3.3° |
rotation in phi and ω, 1 deg. scans | h = −15→15 |
10069 measured reflections | k = −11→10 |
4092 independent reflections | l = −16→23 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.090 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0465P)2 + 0.1983P] where P = (Fo2 + 2Fc2)/3 |
4092 reflections | (Δ/σ)max < 0.001 |
235 parameters | Δρmax = 0.21 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
Crystal data top
C20H23N3O2S | V = 1875.93 (11) Å3 |
Mr = 369.47 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.0595 (4) Å | µ = 0.19 mm−1 |
b = 8.9892 (3) Å | T = 123 K |
c = 18.0483 (6) Å | 0.60 × 0.50 × 0.30 mm |
β = 106.503 (1)° | |
Data collection top
Nonius KappaCCD diffractometer | 3374 reflections with I > 2σ(I) |
10069 measured reflections | Rint = 0.026 |
4092 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.033 | 0 restraints |
wR(F2) = 0.090 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.21 e Å−3 |
4092 reflections | Δρmin = −0.28 e Å−3 |
235 parameters | |
Special details top
Experimental. dx = 40 mm, 40 sec./°., 1 °., 2 sets, 244 frames, mos.= 1.116 (2) °. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.55658 (8) | 0.51507 (11) | 0.11573 (5) | 0.0192 (2) | |
C2 | 0.53789 (10) | 0.65549 (13) | 0.12727 (6) | 0.0186 (2) | |
N2 | 0.62200 (8) | 0.74882 (11) | 0.16308 (6) | 0.0200 (2) | |
C21 | 0.60018 (11) | 0.90816 (14) | 0.16977 (7) | 0.0247 (3) | |
H21A | 0.5481 | 0.9434 | 0.1200 | 0.030* | |
H21B | 0.6743 | 0.9624 | 0.1788 | 0.030* | |
C22 | 0.54676 (13) | 0.94707 (17) | 0.23377 (8) | 0.0364 (3) | |
H22A | 0.5349 | 1.0549 | 0.2345 | 0.055* | |
H22B | 0.5986 | 0.9154 | 0.2836 | 0.055* | |
H22C | 0.4722 | 0.8962 | 0.2247 | 0.055* | |
C23 | 0.73978 (10) | 0.69133 (15) | 0.19616 (7) | 0.0244 (3) | |
H23A | 0.7959 | 0.7644 | 0.1871 | 0.029* | |
H23B | 0.7488 | 0.5980 | 0.1693 | 0.029* | |
C24 | 0.76704 (13) | 0.6615 (2) | 0.28142 (9) | 0.0472 (4) | |
H24A | 0.8461 | 0.6231 | 0.3007 | 0.071* | |
H24B | 0.7126 | 0.5879 | 0.2907 | 0.071* | |
H24C | 0.7603 | 0.7541 | 0.3085 | 0.071* | |
O3 | 0.43242 (7) | 0.72369 (9) | 0.10560 (5) | 0.02098 (19) | |
C4 | 0.32978 (9) | 0.64628 (14) | 0.06735 (7) | 0.0203 (3) | |
O4 | 0.24172 (7) | 0.71914 (10) | 0.05296 (5) | 0.0275 (2) | |
C4A | 0.34812 (9) | 0.49406 (13) | 0.05284 (6) | 0.0189 (3) | |
C4B | 0.26436 (9) | 0.38243 (14) | 0.01737 (7) | 0.0206 (3) | |
C5 | 0.13585 (10) | 0.40177 (15) | −0.01428 (8) | 0.0263 (3) | |
H5A | 0.1176 | 0.4524 | −0.0650 | 0.032* | |
H5B | 0.1066 | 0.4641 | 0.0213 | 0.032* | |
C6 | 0.07766 (11) | 0.24990 (15) | −0.02333 (8) | 0.0273 (3) | |
H6A | 0.0824 | 0.2083 | 0.0283 | 0.033* | |
H6B | −0.0051 | 0.2604 | −0.0522 | 0.033* | |
N7 | 0.13420 (9) | 0.14833 (12) | −0.06494 (6) | 0.0256 (2) | |
C71 | 0.06566 (11) | 0.01351 (16) | −0.09180 (8) | 0.0324 (3) | |
H71A | −0.0171 | 0.0407 | −0.1117 | 0.039* | |
H71B | 0.0741 | −0.0553 | −0.0477 | 0.039* | |
C72 | 0.10345 (10) | −0.06459 (15) | −0.15479 (7) | 0.0263 (3) | |
C73 | 0.17449 (12) | −0.18859 (15) | −0.13935 (8) | 0.0319 (3) | |
H73 | 0.1965 | −0.2293 | −0.0887 | 0.038* | |
C74 | 0.21427 (12) | −0.25465 (15) | −0.19670 (9) | 0.0350 (3) | |
H74 | 0.2647 | −0.3380 | −0.1847 | 0.042* | |
C75 | 0.18032 (12) | −0.19873 (17) | −0.27112 (8) | 0.0350 (3) | |
H75 | 0.2065 | −0.2440 | −0.3106 | 0.042* | |
C76 | 0.10778 (12) | −0.07623 (16) | −0.28757 (8) | 0.0333 (3) | |
H76 | 0.0840 | −0.0377 | −0.3387 | 0.040* | |
C77 | 0.06958 (10) | −0.00936 (16) | −0.23017 (7) | 0.0285 (3) | |
H77 | 0.0200 | 0.0747 | −0.2422 | 0.034* | |
C8 | 0.25010 (10) | 0.10833 (15) | −0.01587 (7) | 0.0253 (3) | |
H8A | 0.2929 | 0.0537 | −0.0467 | 0.030* | |
H8B | 0.2435 | 0.0431 | 0.0269 | 0.030* | |
C8A | 0.31368 (10) | 0.24800 (13) | 0.01616 (7) | 0.0215 (3) | |
S9 | 0.46362 (2) | 0.25101 (3) | 0.058234 (17) | 0.02160 (10) | |
C9A | 0.45968 (9) | 0.43939 (13) | 0.07814 (6) | 0.0193 (3) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0188 (5) | 0.0187 (5) | 0.0187 (5) | −0.0006 (4) | 0.0031 (4) | 0.0001 (4) |
C2 | 0.0194 (5) | 0.0218 (6) | 0.0145 (5) | 0.0009 (5) | 0.0048 (4) | 0.0023 (5) |
N2 | 0.0212 (5) | 0.0178 (5) | 0.0202 (5) | −0.0019 (4) | 0.0043 (4) | −0.0013 (4) |
C21 | 0.0295 (6) | 0.0188 (6) | 0.0252 (6) | −0.0022 (5) | 0.0071 (5) | −0.0020 (5) |
C22 | 0.0438 (8) | 0.0348 (8) | 0.0331 (8) | 0.0026 (7) | 0.0149 (6) | −0.0074 (6) |
C23 | 0.0187 (6) | 0.0231 (7) | 0.0298 (7) | −0.0027 (5) | 0.0046 (5) | −0.0004 (5) |
C24 | 0.0339 (8) | 0.0697 (12) | 0.0338 (8) | 0.0166 (8) | 0.0027 (6) | 0.0149 (8) |
O3 | 0.0199 (4) | 0.0202 (5) | 0.0207 (4) | 0.0025 (3) | 0.0024 (3) | −0.0003 (3) |
C4 | 0.0194 (6) | 0.0244 (7) | 0.0161 (6) | −0.0005 (5) | 0.0033 (4) | 0.0015 (5) |
O4 | 0.0225 (4) | 0.0292 (5) | 0.0281 (5) | 0.0063 (4) | 0.0029 (4) | 0.0010 (4) |
C4A | 0.0191 (5) | 0.0225 (6) | 0.0145 (5) | 0.0003 (5) | 0.0039 (4) | 0.0010 (5) |
C4B | 0.0197 (5) | 0.0250 (7) | 0.0167 (6) | −0.0023 (5) | 0.0043 (4) | 0.0003 (5) |
C5 | 0.0191 (6) | 0.0316 (8) | 0.0269 (7) | −0.0015 (5) | 0.0043 (5) | −0.0024 (6) |
C6 | 0.0205 (6) | 0.0356 (8) | 0.0260 (7) | −0.0065 (5) | 0.0067 (5) | −0.0025 (6) |
N7 | 0.0218 (5) | 0.0310 (6) | 0.0233 (5) | −0.0094 (4) | 0.0055 (4) | −0.0050 (5) |
C71 | 0.0309 (7) | 0.0381 (8) | 0.0295 (7) | −0.0168 (6) | 0.0109 (6) | −0.0060 (6) |
C72 | 0.0247 (6) | 0.0276 (7) | 0.0243 (6) | −0.0137 (5) | 0.0031 (5) | −0.0032 (5) |
C73 | 0.0359 (7) | 0.0270 (7) | 0.0266 (7) | −0.0112 (6) | −0.0008 (6) | 0.0026 (6) |
C74 | 0.0345 (7) | 0.0232 (8) | 0.0422 (8) | −0.0046 (6) | 0.0027 (6) | −0.0034 (6) |
C75 | 0.0362 (7) | 0.0357 (8) | 0.0330 (8) | −0.0111 (7) | 0.0097 (6) | −0.0121 (6) |
C76 | 0.0342 (7) | 0.0399 (9) | 0.0212 (6) | −0.0120 (6) | 0.0006 (5) | −0.0009 (6) |
C77 | 0.0234 (6) | 0.0302 (8) | 0.0275 (7) | −0.0056 (5) | 0.0001 (5) | −0.0007 (6) |
C8 | 0.0260 (6) | 0.0238 (7) | 0.0252 (6) | −0.0049 (5) | 0.0059 (5) | −0.0019 (5) |
C8A | 0.0214 (6) | 0.0245 (7) | 0.0176 (6) | −0.0036 (5) | 0.0042 (5) | −0.0005 (5) |
S9 | 0.02096 (16) | 0.01875 (17) | 0.02313 (17) | −0.00013 (12) | 0.00312 (12) | −0.00123 (12) |
C9A | 0.0216 (6) | 0.0204 (6) | 0.0158 (5) | −0.0010 (5) | 0.0052 (4) | 0.0008 (5) |
Geometric parameters (Å, º) top
N1—C2 | 1.3093 (16) | C5—H5A | 0.9900 |
N1—C9A | 1.3558 (14) | C5—H5B | 0.9900 |
C2—N2 | 1.3334 (15) | C6—N7 | 1.4675 (17) |
C2—O3 | 1.3654 (13) | C6—H6A | 0.9900 |
N2—C21 | 1.4674 (16) | C6—H6B | 0.9900 |
N2—C23 | 1.4695 (15) | N7—C71 | 1.4695 (16) |
C21—C22 | 1.5148 (18) | N7—C8 | 1.4710 (15) |
C21—H21A | 0.9900 | C71—C72 | 1.5125 (19) |
C21—H21B | 0.9900 | C71—H71A | 0.9900 |
C22—H22A | 0.9800 | C71—H71B | 0.9900 |
C22—H22B | 0.9800 | C72—C73 | 1.385 (2) |
C22—H22C | 0.9800 | C72—C77 | 1.3959 (18) |
C23—C24 | 1.5035 (19) | C73—C74 | 1.391 (2) |
C23—H23A | 0.9900 | C73—H73 | 0.9500 |
C23—H23B | 0.9900 | C74—C75 | 1.383 (2) |
C24—H24A | 0.9800 | C74—H74 | 0.9500 |
C24—H24B | 0.9800 | C75—C76 | 1.385 (2) |
C24—H24C | 0.9800 | C75—H75 | 0.9500 |
O3—C4 | 1.4169 (14) | C76—C77 | 1.3849 (19) |
C4—O4 | 1.2114 (14) | C76—H76 | 0.9500 |
C4—C4A | 1.4222 (17) | C77—H77 | 0.9500 |
C4A—C9A | 1.3824 (15) | C8—C8A | 1.4989 (17) |
C4A—C4B | 1.4386 (16) | C8—H8A | 0.9900 |
C4B—C8A | 1.3498 (17) | C8—H8B | 0.9900 |
C4B—C5 | 1.5018 (15) | C8A—S9 | 1.7512 (12) |
C5—C6 | 1.5225 (18) | S9—C9A | 1.7345 (13) |
| | | |
C2—N1—C9A | 113.61 (10) | N7—C6—C5 | 110.23 (10) |
N1—C2—N2 | 122.83 (10) | N7—C6—H6A | 109.6 |
N1—C2—O3 | 125.16 (10) | C5—C6—H6A | 109.6 |
N2—C2—O3 | 112.01 (10) | N7—C6—H6B | 109.6 |
C2—N2—C21 | 121.64 (10) | C5—C6—H6B | 109.6 |
C2—N2—C23 | 119.34 (10) | H6A—C6—H6B | 108.1 |
C21—N2—C23 | 119.02 (10) | C6—N7—C71 | 112.48 (10) |
N2—C21—C22 | 114.40 (11) | C6—N7—C8 | 110.13 (10) |
N2—C21—H21A | 108.7 | C71—N7—C8 | 110.25 (10) |
C22—C21—H21A | 108.7 | N7—C71—C72 | 111.68 (10) |
N2—C21—H21B | 108.7 | N7—C71—H71A | 109.3 |
C22—C21—H21B | 108.7 | C72—C71—H71A | 109.3 |
H21A—C21—H21B | 107.6 | N7—C71—H71B | 109.3 |
C21—C22—H22A | 109.5 | C72—C71—H71B | 109.3 |
C21—C22—H22B | 109.5 | H71A—C71—H71B | 107.9 |
H22A—C22—H22B | 109.5 | C73—C72—C77 | 118.38 (13) |
C21—C22—H22C | 109.5 | C73—C72—C71 | 121.57 (12) |
H22A—C22—H22C | 109.5 | C77—C72—C71 | 120.02 (13) |
H22B—C22—H22C | 109.5 | C72—C73—C74 | 121.20 (13) |
N2—C23—C24 | 112.56 (10) | C72—C73—H73 | 119.4 |
N2—C23—H23A | 109.1 | C74—C73—H73 | 119.4 |
C24—C23—H23A | 109.1 | C75—C74—C73 | 119.86 (14) |
N2—C23—H23B | 109.1 | C75—C74—H74 | 120.1 |
C24—C23—H23B | 109.1 | C73—C74—H74 | 120.1 |
H23A—C23—H23B | 107.8 | C74—C75—C76 | 119.47 (14) |
C23—C24—H24A | 109.5 | C74—C75—H75 | 120.3 |
C23—C24—H24B | 109.5 | C76—C75—H75 | 120.3 |
H24A—C24—H24B | 109.5 | C77—C76—C75 | 120.58 (13) |
C23—C24—H24C | 109.5 | C77—C76—H76 | 119.7 |
H24A—C24—H24C | 109.5 | C75—C76—H76 | 119.7 |
H24B—C24—H24C | 109.5 | C76—C77—C72 | 120.48 (13) |
C2—O3—C4 | 122.20 (9) | C76—C77—H77 | 119.8 |
O4—C4—O3 | 115.48 (11) | C72—C77—H77 | 119.8 |
O4—C4—C4A | 130.80 (11) | N7—C8—C8A | 108.78 (10) |
O3—C4—C4A | 113.72 (10) | N7—C8—H8A | 109.9 |
C9A—C4A—C4 | 117.96 (10) | C8A—C8—H8A | 109.9 |
C9A—C4A—C4B | 113.17 (11) | N7—C8—H8B | 109.9 |
C4—C4A—C4B | 128.81 (10) | C8A—C8—H8B | 109.9 |
C8A—C4B—C4A | 112.01 (10) | H8A—C8—H8B | 108.3 |
C8A—C4B—C5 | 120.62 (11) | C4B—C8A—C8 | 125.22 (11) |
C4A—C4B—C5 | 127.35 (11) | C4B—C8A—S9 | 112.62 (9) |
C4B—C5—C6 | 109.36 (11) | C8—C8A—S9 | 122.16 (9) |
C4B—C5—H5A | 109.8 | C9A—S9—C8A | 91.10 (5) |
C6—C5—H5A | 109.8 | N1—C9A—C4A | 127.34 (11) |
C4B—C5—H5B | 109.8 | N1—C9A—S9 | 121.54 (9) |
C6—C5—H5B | 109.8 | C4A—C9A—S9 | 111.10 (9) |
H5A—C5—H5B | 108.3 | | |
| | | |
C9A—N1—C2—N2 | −179.86 (10) | N7—C71—C72—C73 | 100.64 (15) |
C9A—N1—C2—O3 | 0.89 (16) | N7—C71—C72—C77 | −77.42 (14) |
N1—C2—N2—C21 | 175.05 (11) | C77—C72—C73—C74 | 1.84 (19) |
O3—C2—N2—C21 | −5.62 (15) | C71—C72—C73—C74 | −176.25 (11) |
N1—C2—N2—C23 | −4.42 (17) | C72—C73—C74—C75 | −1.7 (2) |
O3—C2—N2—C23 | 174.92 (9) | C73—C74—C75—C76 | 0.7 (2) |
C2—N2—C21—C22 | 80.24 (14) | C74—C75—C76—C77 | 0.3 (2) |
C23—N2—C21—C22 | −100.29 (13) | C75—C76—C77—C72 | −0.12 (19) |
C2—N2—C23—C24 | −97.92 (14) | C73—C72—C77—C76 | −0.91 (18) |
C21—N2—C23—C24 | 82.60 (15) | C71—C72—C77—C76 | 177.20 (11) |
N1—C2—O3—C4 | 0.04 (17) | C6—N7—C8—C8A | −50.28 (13) |
N2—C2—O3—C4 | −179.28 (9) | C71—N7—C8—C8A | −174.97 (10) |
C2—O3—C4—O4 | 178.37 (10) | C4A—C4B—C8A—C8 | 179.21 (11) |
C2—O3—C4—C4A | −1.15 (15) | C5—C4B—C8A—C8 | 0.56 (19) |
O4—C4—C4A—C9A | −178.16 (12) | C4A—C4B—C8A—S9 | 0.18 (13) |
O3—C4—C4A—C9A | 1.27 (15) | C5—C4B—C8A—S9 | −178.47 (9) |
O4—C4—C4A—C4B | −1.2 (2) | N7—C8—C8A—C4B | 16.29 (17) |
O3—C4—C4A—C4B | 178.25 (10) | N7—C8—C8A—S9 | −164.77 (8) |
C9A—C4A—C4B—C8A | −0.39 (15) | C4B—C8A—S9—C9A | 0.04 (10) |
C4—C4A—C4B—C8A | −177.49 (11) | C8—C8A—S9—C9A | −179.02 (11) |
C9A—C4A—C4B—C5 | 178.15 (11) | C2—N1—C9A—C4A | −0.71 (17) |
C4—C4A—C4B—C5 | 1.0 (2) | C2—N1—C9A—S9 | −178.81 (9) |
C8A—C4B—C5—C6 | 15.71 (16) | C4—C4A—C9A—N1 | −0.41 (18) |
C4A—C4B—C5—C6 | −162.71 (11) | C4B—C4A—C9A—N1 | −177.85 (11) |
C4B—C5—C6—N7 | −49.80 (13) | C4—C4A—C9A—S9 | 177.86 (9) |
C5—C6—N7—C71 | −166.12 (11) | C4B—C4A—C9A—S9 | 0.42 (13) |
C5—C6—N7—C8 | 70.47 (13) | C8A—S9—C9A—N1 | 178.12 (10) |
C6—N7—C71—C72 | 161.71 (11) | C8A—S9—C9A—C4A | −0.27 (9) |
C8—N7—C71—C72 | −74.95 (14) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C73—H73···O4i | 0.95 | 2.50 | 3.4341 (16) | 167 |
Symmetry code: (i) x, y−1, z. |
(III)
N-(7-Benzyl-4-oxo-5,6,7,8-tetrahydro-4
H-3,9-dithia-1,7-diazafluoren- 2-yl)benzamide
top
Crystal data top
C23H19N3O2S2 | F(000) = 904 |
Mr = 433.53 | Dx = 1.453 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3743 reflections |
a = 9.2927 (2) Å | θ = 1–27.5° |
b = 29.3299 (6) Å | µ = 0.30 mm−1 |
c = 7.5645 (1) Å | T = 123 K |
β = 106.015 (1)° | Plate, yellow |
V = 1981.72 (7) Å3 | 0.50 × 0.30 × 0.20 mm |
Z = 4 | |
Data collection top
Nonius KappaCCD diffractometer | 3832 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.027 |
Graphite monochromator | θmax = 27.5°, θmin = 3.1° |
rotation in phi and ω, 1 deg. scans | h = −11→12 |
11671 measured reflections | k = −34→38 |
4398 independent reflections | l = −9→5 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.090 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0449P)2 + 0.6981P] where P = (Fo2 + 2Fc2)/3 |
4398 reflections | (Δ/σ)max = 0.001 |
274 parameters | Δρmax = 0.46 e Å−3 |
1 restraint | Δρmin = −0.37 e Å−3 |
Crystal data top
C23H19N3O2S2 | V = 1981.72 (7) Å3 |
Mr = 433.53 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.2927 (2) Å | µ = 0.30 mm−1 |
b = 29.3299 (6) Å | T = 123 K |
c = 7.5645 (1) Å | 0.50 × 0.30 × 0.20 mm |
β = 106.015 (1)° | |
Data collection top
Nonius KappaCCD diffractometer | 3832 reflections with I > 2σ(I) |
11671 measured reflections | Rint = 0.027 |
4398 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.033 | 1 restraint |
wR(F2) = 0.090 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.46 e Å−3 |
4398 reflections | Δρmin = −0.37 e Å−3 |
274 parameters | |
Special details top
Experimental. dx = 40 mm, 30 sec./°., 1 °., 2 sets, 250 frames, mos.= 0.570 (2) °. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.79682 (14) | 0.52023 (4) | 0.51254 (17) | 0.0218 (3) | |
C2 | 0.86955 (15) | 0.55670 (5) | 0.57969 (19) | 0.0199 (3) | |
N21 | 0.92148 (14) | 0.58309 (4) | 0.45708 (17) | 0.0206 (2) | |
H21 | 0.9122 (19) | 0.5703 (6) | 0.353 (2) | 0.025* | |
C22 | 0.96165 (15) | 0.62857 (5) | 0.48298 (19) | 0.0214 (3) | |
O22 | 0.96154 (14) | 0.64889 (4) | 0.62344 (15) | 0.0324 (3) | |
C23 | 1.00622 (15) | 0.65129 (5) | 0.32982 (19) | 0.0190 (3) | |
C24 | 0.97997 (16) | 0.69825 (5) | 0.30824 (19) | 0.0221 (3) | |
H24 | 0.9246 | 0.7135 | 0.3791 | 0.027* | |
C25 | 1.03471 (17) | 0.72253 (5) | 0.1836 (2) | 0.0247 (3) | |
H25 | 1.0165 | 0.7543 | 0.1684 | 0.030* | |
C26 | 1.11642 (17) | 0.70023 (5) | 0.0810 (2) | 0.0252 (3) | |
H26 | 1.1565 | 0.7170 | −0.0019 | 0.030* | |
C27 | 1.13946 (16) | 0.65344 (5) | 0.0994 (2) | 0.0243 (3) | |
H27 | 1.1936 | 0.6382 | 0.0273 | 0.029* | |
C28 | 1.08349 (15) | 0.62903 (5) | 0.22295 (19) | 0.0212 (3) | |
H28 | 1.0982 | 0.5970 | 0.2342 | 0.025* | |
S3 | 0.91078 (4) | 0.575481 (12) | 0.80867 (5) | 0.02223 (10) | |
C4 | 0.84117 (15) | 0.53040 (5) | 0.9229 (2) | 0.0196 (3) | |
O4 | 0.87017 (11) | 0.53391 (4) | 1.09107 (14) | 0.0239 (2) | |
C4A | 0.75219 (14) | 0.49553 (5) | 0.81052 (19) | 0.0180 (3) | |
C4B | 0.66690 (15) | 0.46052 (5) | 0.87018 (19) | 0.0184 (3) | |
C5 | 0.64746 (16) | 0.45338 (5) | 1.05904 (19) | 0.0196 (3) | |
H5A | 0.6341 | 0.4831 | 1.1144 | 0.023* | |
H5B | 0.7375 | 0.4384 | 1.1392 | 0.023* | |
C6 | 0.51020 (15) | 0.42346 (5) | 1.0431 (2) | 0.0201 (3) | |
H6A | 0.5042 | 0.4150 | 1.1675 | 0.024* | |
H6B | 0.4186 | 0.4407 | 0.9812 | 0.024* | |
N7 | 0.51883 (13) | 0.38210 (4) | 0.93779 (16) | 0.0189 (2) | |
C71 | 0.40820 (16) | 0.34831 (5) | 0.9556 (2) | 0.0226 (3) | |
H71A | 0.4038 | 0.3237 | 0.8645 | 0.027* | |
H71B | 0.3084 | 0.3630 | 0.9265 | 0.027* | |
C72 | 0.44223 (15) | 0.32742 (5) | 1.14584 (19) | 0.0199 (3) | |
C73 | 0.58852 (16) | 0.32254 (5) | 1.2559 (2) | 0.0237 (3) | |
H73 | 0.6692 | 0.3340 | 1.2145 | 0.028* | |
C74 | 0.61748 (17) | 0.30106 (5) | 1.4256 (2) | 0.0260 (3) | |
H74 | 0.7177 | 0.2982 | 1.5000 | 0.031* | |
C75 | 0.50135 (18) | 0.28381 (5) | 1.4873 (2) | 0.0277 (3) | |
H75 | 0.5217 | 0.2687 | 1.6026 | 0.033* | |
C76 | 0.35499 (18) | 0.28879 (5) | 1.3794 (2) | 0.0297 (3) | |
H76 | 0.2747 | 0.2770 | 1.4207 | 0.036* | |
C77 | 0.32585 (16) | 0.31101 (5) | 1.2109 (2) | 0.0249 (3) | |
H77 | 0.2252 | 0.3150 | 1.1392 | 0.030* | |
C8 | 0.49702 (16) | 0.39339 (5) | 0.7437 (2) | 0.0226 (3) | |
H8A | 0.3908 | 0.4013 | 0.6862 | 0.027* | |
H8B | 0.5227 | 0.3667 | 0.6780 | 0.027* | |
C8A | 0.59499 (15) | 0.43299 (5) | 0.7290 (2) | 0.0205 (3) | |
S9 | 0.62725 (4) | 0.447965 (13) | 0.52184 (5) | 0.02424 (11) | |
C9A | 0.73944 (15) | 0.49314 (5) | 0.62306 (19) | 0.0204 (3) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0270 (6) | 0.0212 (6) | 0.0186 (6) | −0.0054 (5) | 0.0088 (5) | −0.0005 (5) |
C2 | 0.0215 (6) | 0.0212 (7) | 0.0181 (7) | −0.0009 (5) | 0.0073 (5) | 0.0011 (5) |
N21 | 0.0263 (6) | 0.0203 (6) | 0.0173 (6) | −0.0049 (5) | 0.0094 (5) | −0.0012 (5) |
C22 | 0.0225 (7) | 0.0214 (7) | 0.0211 (7) | −0.0026 (5) | 0.0075 (5) | −0.0001 (6) |
O22 | 0.0521 (7) | 0.0248 (6) | 0.0258 (6) | −0.0084 (5) | 0.0201 (5) | −0.0048 (4) |
C23 | 0.0182 (6) | 0.0196 (7) | 0.0179 (7) | −0.0036 (5) | 0.0028 (5) | 0.0001 (5) |
C24 | 0.0241 (7) | 0.0214 (7) | 0.0191 (7) | −0.0002 (6) | 0.0032 (5) | −0.0030 (5) |
C25 | 0.0301 (7) | 0.0195 (7) | 0.0214 (7) | −0.0017 (6) | 0.0019 (6) | 0.0023 (6) |
C26 | 0.0287 (7) | 0.0245 (7) | 0.0221 (7) | −0.0054 (6) | 0.0063 (6) | 0.0046 (6) |
C27 | 0.0256 (7) | 0.0257 (7) | 0.0235 (7) | −0.0033 (6) | 0.0100 (6) | −0.0008 (6) |
C28 | 0.0222 (7) | 0.0187 (7) | 0.0226 (7) | −0.0025 (5) | 0.0061 (5) | 0.0001 (6) |
S3 | 0.02805 (19) | 0.02204 (19) | 0.01761 (18) | −0.00751 (14) | 0.00801 (14) | −0.00200 (13) |
C4 | 0.0195 (6) | 0.0208 (7) | 0.0194 (7) | −0.0004 (5) | 0.0068 (5) | 0.0003 (5) |
O4 | 0.0289 (5) | 0.0262 (5) | 0.0172 (5) | −0.0061 (4) | 0.0073 (4) | −0.0019 (4) |
C4A | 0.0192 (6) | 0.0184 (6) | 0.0172 (6) | 0.0008 (5) | 0.0065 (5) | 0.0009 (5) |
C4B | 0.0190 (6) | 0.0180 (7) | 0.0185 (7) | 0.0007 (5) | 0.0058 (5) | −0.0001 (5) |
C5 | 0.0242 (7) | 0.0184 (7) | 0.0171 (7) | −0.0031 (5) | 0.0073 (5) | −0.0012 (5) |
C6 | 0.0225 (6) | 0.0189 (7) | 0.0203 (7) | −0.0021 (5) | 0.0084 (5) | −0.0018 (5) |
N7 | 0.0222 (6) | 0.0177 (6) | 0.0173 (6) | −0.0043 (4) | 0.0062 (4) | −0.0007 (4) |
C71 | 0.0236 (7) | 0.0226 (7) | 0.0206 (7) | −0.0066 (6) | 0.0041 (6) | 0.0008 (5) |
C72 | 0.0243 (7) | 0.0147 (6) | 0.0202 (7) | −0.0029 (5) | 0.0055 (5) | −0.0005 (5) |
C73 | 0.0228 (7) | 0.0219 (7) | 0.0263 (7) | −0.0033 (6) | 0.0065 (6) | −0.0001 (6) |
C74 | 0.0278 (7) | 0.0205 (7) | 0.0257 (8) | 0.0003 (6) | 0.0005 (6) | 0.0006 (6) |
C75 | 0.0408 (8) | 0.0186 (7) | 0.0225 (7) | −0.0017 (6) | 0.0067 (6) | 0.0026 (6) |
C76 | 0.0327 (8) | 0.0295 (8) | 0.0297 (8) | −0.0070 (7) | 0.0132 (7) | 0.0030 (7) |
C77 | 0.0231 (7) | 0.0253 (7) | 0.0259 (8) | −0.0022 (6) | 0.0063 (6) | 0.0008 (6) |
C8 | 0.0281 (7) | 0.0224 (7) | 0.0171 (7) | −0.0067 (6) | 0.0057 (6) | −0.0010 (5) |
C8A | 0.0234 (7) | 0.0198 (7) | 0.0187 (7) | −0.0021 (5) | 0.0066 (5) | 0.0007 (5) |
S9 | 0.0337 (2) | 0.0241 (2) | 0.01515 (18) | −0.00952 (15) | 0.00706 (15) | −0.00207 (13) |
C9A | 0.0234 (6) | 0.0199 (7) | 0.0183 (7) | −0.0016 (5) | 0.0062 (5) | −0.0007 (5) |
Geometric parameters (Å, º) top
N1—C2 | 1.2920 (19) | C5—H5A | 0.9900 |
N1—C9A | 1.3640 (18) | C5—H5B | 0.9900 |
C2—N21 | 1.3927 (17) | C6—N7 | 1.4655 (18) |
C2—S3 | 1.7562 (14) | C6—H6A | 0.9900 |
N21—C22 | 1.3844 (18) | C6—H6B | 0.9900 |
N21—H21 | 0.855 (14) | N7—C71 | 1.4608 (17) |
C22—O22 | 1.2185 (17) | N7—C8 | 1.4637 (18) |
C22—C23 | 1.4908 (19) | C71—C72 | 1.515 (2) |
C23—C28 | 1.384 (2) | C71—H71A | 0.9900 |
C23—C24 | 1.400 (2) | C71—H71B | 0.9900 |
C24—C25 | 1.385 (2) | C72—C77 | 1.392 (2) |
C24—H24 | 0.9500 | C72—C73 | 1.392 (2) |
C25—C26 | 1.390 (2) | C73—C74 | 1.388 (2) |
C25—H25 | 0.9500 | C73—H73 | 0.9500 |
C26—C27 | 1.390 (2) | C74—C75 | 1.384 (2) |
C26—H26 | 0.9500 | C74—H74 | 0.9500 |
C27—C28 | 1.387 (2) | C75—C76 | 1.387 (2) |
C27—H27 | 0.9500 | C75—H75 | 0.9500 |
C28—H28 | 0.9500 | C76—C77 | 1.390 (2) |
S3—C4 | 1.7948 (14) | C76—H76 | 0.9500 |
C4—O4 | 1.2299 (17) | C77—H77 | 0.9500 |
C4—C4A | 1.4368 (19) | C8—C8A | 1.4986 (19) |
C4A—C9A | 1.3918 (19) | C8—H8A | 0.9900 |
C4A—C4B | 1.4435 (18) | C8—H8B | 0.9900 |
C4B—C8A | 1.359 (2) | C8A—S9 | 1.7314 (14) |
C4B—C5 | 1.5032 (19) | S9—C9A | 1.7287 (14) |
C5—C6 | 1.5253 (19) | | |
| | | |
C2—N1—C9A | 119.46 (12) | N7—C6—H6A | 109.6 |
N1—C2—N21 | 115.99 (13) | C5—C6—H6A | 109.6 |
N1—C2—S3 | 126.56 (11) | N7—C6—H6B | 109.6 |
N21—C2—S3 | 117.45 (10) | C5—C6—H6B | 109.6 |
C22—N21—C2 | 124.81 (12) | H6A—C6—H6B | 108.1 |
C22—N21—H21 | 120.6 (12) | C71—N7—C8 | 109.88 (11) |
C2—N21—H21 | 113.8 (12) | C71—N7—C6 | 111.46 (11) |
O22—C22—N21 | 121.98 (13) | C8—N7—C6 | 110.17 (11) |
O22—C22—C23 | 121.75 (13) | N7—C71—C72 | 113.23 (11) |
N21—C22—C23 | 116.27 (12) | N7—C71—H71A | 108.9 |
C28—C23—C24 | 119.84 (13) | C72—C71—H71A | 108.9 |
C28—C23—C22 | 122.90 (13) | N7—C71—H71B | 108.9 |
C24—C23—C22 | 116.96 (12) | C72—C71—H71B | 108.9 |
C25—C24—C23 | 120.00 (13) | H71A—C71—H71B | 107.7 |
C25—C24—H24 | 120.0 | C77—C72—C73 | 118.62 (13) |
C23—C24—H24 | 120.0 | C77—C72—C71 | 119.78 (13) |
C24—C25—C26 | 119.87 (14) | C73—C72—C71 | 121.55 (13) |
C24—C25—H25 | 120.1 | C74—C73—C72 | 120.53 (13) |
C26—C25—H25 | 120.1 | C74—C73—H73 | 119.7 |
C27—C26—C25 | 120.08 (14) | C72—C73—H73 | 119.7 |
C27—C26—H26 | 120.0 | C75—C74—C73 | 120.50 (14) |
C25—C26—H26 | 120.0 | C75—C74—H74 | 119.8 |
C28—C27—C26 | 120.07 (14) | C73—C74—H74 | 119.8 |
C28—C27—H27 | 120.0 | C74—C75—C76 | 119.47 (14) |
C26—C27—H27 | 120.0 | C74—C75—H75 | 120.3 |
C23—C28—C27 | 120.09 (13) | C76—C75—H75 | 120.3 |
C23—C28—H28 | 120.0 | C75—C76—C77 | 120.01 (14) |
C27—C28—H28 | 120.0 | C75—C76—H76 | 120.0 |
C2—S3—C4 | 103.54 (7) | C77—C76—H76 | 120.0 |
O4—C4—C4A | 126.70 (13) | C76—C77—C72 | 120.83 (14) |
O4—C4—S3 | 115.54 (11) | C76—C77—H77 | 119.6 |
C4A—C4—S3 | 117.69 (10) | C72—C77—H77 | 119.6 |
C9A—C4A—C4 | 120.79 (12) | N7—C8—C8A | 109.32 (11) |
C9A—C4A—C4B | 112.52 (12) | N7—C8—H8A | 109.8 |
C4—C4A—C4B | 126.69 (12) | C8A—C8—H8A | 109.8 |
C8A—C4B—C4A | 111.74 (12) | N7—C8—H8B | 109.8 |
C8A—C4B—C5 | 120.15 (12) | C8A—C8—H8B | 109.8 |
C4A—C4B—C5 | 128.07 (12) | H8A—C8—H8B | 108.3 |
C4B—C5—C6 | 108.79 (11) | C4B—C8A—C8 | 125.41 (13) |
C4B—C5—H5A | 109.9 | C4B—C8A—S9 | 112.97 (10) |
C6—C5—H5A | 109.9 | C8—C8A—S9 | 121.61 (11) |
C4B—C5—H5B | 109.9 | C9A—S9—C8A | 91.57 (7) |
C6—C5—H5B | 109.9 | N1—C9A—C4A | 131.10 (13) |
H5A—C5—H5B | 108.3 | N1—C9A—S9 | 117.71 (10) |
N7—C6—C5 | 110.43 (11) | C4A—C9A—S9 | 111.18 (10) |
| | | |
C9A—N1—C2—N21 | −178.52 (12) | C5—C6—N7—C71 | 166.99 (11) |
C9A—N1—C2—S3 | 2.4 (2) | C5—C6—N7—C8 | −70.76 (14) |
N1—C2—N21—C22 | 160.22 (14) | C8—N7—C71—C72 | 167.93 (12) |
S3—C2—N21—C22 | −20.61 (18) | C6—N7—C71—C72 | −69.66 (15) |
C2—N21—C22—O22 | 3.8 (2) | N7—C71—C72—C77 | 152.40 (13) |
C2—N21—C22—C23 | −176.63 (12) | N7—C71—C72—C73 | −30.10 (19) |
O22—C22—C23—C28 | 144.27 (15) | C77—C72—C73—C74 | 1.0 (2) |
N21—C22—C23—C28 | −35.30 (19) | C71—C72—C73—C74 | −176.50 (13) |
O22—C22—C23—C24 | −29.4 (2) | C72—C73—C74—C75 | 0.6 (2) |
N21—C22—C23—C24 | 150.98 (13) | C73—C74—C75—C76 | −1.1 (2) |
C28—C23—C24—C25 | −1.7 (2) | C74—C75—C76—C77 | −0.1 (2) |
C22—C23—C24—C25 | 172.21 (13) | C75—C76—C77—C72 | 1.7 (2) |
C23—C24—C25—C26 | −0.4 (2) | C73—C72—C77—C76 | −2.2 (2) |
C24—C25—C26—C27 | 1.9 (2) | C71—C72—C77—C76 | 175.39 (14) |
C25—C26—C27—C28 | −1.3 (2) | C71—N7—C8—C8A | 171.43 (12) |
C24—C23—C28—C27 | 2.3 (2) | C6—N7—C8—C8A | 48.26 (15) |
C22—C23—C28—C27 | −171.24 (13) | C4A—C4B—C8A—C8 | −179.95 (13) |
C26—C27—C28—C23 | −0.8 (2) | C5—C4B—C8A—C8 | −2.0 (2) |
N1—C2—S3—C4 | 4.18 (15) | C4A—C4B—C8A—S9 | 0.11 (15) |
N21—C2—S3—C4 | −174.90 (11) | C5—C4B—C8A—S9 | 178.04 (10) |
C2—S3—C4—O4 | 173.43 (11) | N7—C8—C8A—C4B | −13.5 (2) |
C2—S3—C4—C4A | −9.59 (12) | N7—C8—C8A—S9 | 166.44 (10) |
O4—C4—C4A—C9A | −174.01 (14) | C4B—C8A—S9—C9A | −0.63 (12) |
S3—C4—C4A—C9A | 9.39 (18) | C8—C8A—S9—C9A | 179.43 (12) |
O4—C4—C4A—C4B | 6.8 (2) | C2—N1—C9A—C4A | −4.9 (2) |
S3—C4—C4A—C4B | −169.78 (11) | C2—N1—C9A—S9 | 173.64 (11) |
C9A—C4A—C4B—C8A | 0.64 (17) | C4—C4A—C9A—N1 | −1.8 (2) |
C4—C4A—C4B—C8A | 179.87 (13) | C4B—C4A—C9A—N1 | 177.49 (14) |
C9A—C4A—C4B—C5 | −177.08 (13) | C4—C4A—C9A—S9 | 179.62 (11) |
C4—C4A—C4B—C5 | 2.1 (2) | C4B—C4A—C9A—S9 | −1.10 (15) |
C8A—C4B—C5—C6 | −16.44 (18) | C8A—S9—C9A—N1 | −177.82 (12) |
C4A—C4B—C5—C6 | 161.11 (13) | C8A—S9—C9A—C4A | 0.98 (11) |
C4B—C5—C6—N7 | 51.47 (15) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···O4i | 0.86 (1) | 2.19 (1) | 3.0406 (16) | 175 (2) |
Symmetry code: (i) x, y, z−1. |
Experimental details
| (I) | (II) | (III) |
Crystal data |
Chemical formula | C24H33N3O3S | C20H23N3O2S | C23H19N3O2S2 |
Mr | 443.59 | 369.47 | 433.53 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, P21/c | Monoclinic, P21/c |
Temperature (K) | 123 | 123 | 123 |
a, b, c (Å) | 9.7735 (2), 24.4098 (5), 19.7439 (5) | 12.0595 (4), 8.9892 (3), 18.0483 (6) | 9.2927 (2), 29.3299 (6), 7.5645 (1) |
β (°) | 93.865 (1) | 106.503 (1) | 106.015 (1) |
V (Å3) | 4699.57 (18) | 1875.93 (11) | 1981.72 (7) |
Z | 8 | 4 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.17 | 0.19 | 0.30 |
Crystal size (mm) | 0.50 × 0.40 × 0.20 | 0.60 × 0.50 × 0.30 | 0.50 × 0.30 × 0.20 |
|
Data collection |
Diffractometer | Nonius KappaCCD diffractometer | Nonius KappaCCD diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | – | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 28911, 10616, 6646 | 10069, 4092, 3374 | 11671, 4398, 3832 |
Rint | 0.052 | 0.026 | 0.027 |
(sin θ/λ)max (Å−1) | 0.649 | 0.649 | 0.649 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.128, 0.97 | 0.033, 0.090, 1.08 | 0.033, 0.090, 1.04 |
No. of reflections | 10616 | 4092 | 4398 |
No. of parameters | 565 | 235 | 274 |
No. of restraints | 2 | 0 | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.51, −0.29 | 0.21, −0.28 | 0.46, −0.37 |
Selected geometric parameters (Å, º) for (I) topN2—C21 | 1.376 (3) | N2'—C21' | 1.376 (3) |
C21—O21 | 1.235 (2) | C21'—O21' | 1.229 (2) |
C21—N21 | 1.358 (2) | C21'—N21' | 1.359 (3) |
C31—O31 | 1.225 (2) | C31'—O31' | 1.222 (2) |
C31—O32 | 1.343 (2) | C31'—O32' | 1.341 (2) |
| | | |
N2—C2—C3 | 125.19 (17) | N2'—C2'—C3' | 124.70 (18) |
C2—C3—C31 | 119.94 (18) | C2'—C3'—C31' | 120.17 (19) |
O31—C31—C3 | 124.45 (19) | O31'—C31'—C3' | 123.9 (2) |
| | | |
C2—N2—C21—N21 | −173.60 (17) | C2'—N2'—C21'—N21' | 174.37 (17) |
C2—C3—C31—O32 | 177.93 (16) | C2'—C3'—C31'—O32' | −175.24 (16) |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O31 | 0.881 (14) | 1.961 (18) | 2.684 (2) | 138.4 (19) |
N2'—H2'···O31' | 0.870 (14) | 1.983 (18) | 2.674 (2) | 135.5 (19) |
C64'—H64'···O21i | 0.95 | 2.54 | 3.448 (2) | 160 |
C66—H66···O21'ii | 0.95 | 2.50 | 3.403 (2) | 159 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x, y+1/2, −z+1/2. |
Selected geometric parameters (Å, º) for (II) topN1—C2 | 1.3093 (16) | O3—C4 | 1.4169 (14) |
C2—N2 | 1.3334 (15) | C4—O4 | 1.2114 (14) |
C2—O3 | 1.3654 (13) | | |
| | | |
C2—N1—C9A | 113.61 (10) | O3—C4—C4A | 113.72 (10) |
N1—C2—O3 | 125.16 (10) | C9A—C4A—C4 | 117.96 (10) |
C2—O3—C4 | 122.20 (9) | N1—C9A—C4A | 127.34 (11) |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
C73—H73···O4i | 0.95 | 2.50 | 3.4341 (16) | 167 |
Symmetry code: (i) x, y−1, z. |
Selected geometric parameters (Å, º) for (III) topN1—C2 | 1.2920 (19) | S3—C4 | 1.7948 (14) |
C2—N21 | 1.3927 (17) | C4—O4 | 1.2299 (17) |
C2—S3 | 1.7562 (14) | | |
| | | |
C2—N1—C9A | 119.46 (12) | C4A—C4—S3 | 117.69 (10) |
N1—C2—S3 | 126.56 (11) | C9A—C4A—C4 | 120.79 (12) |
C2—S3—C4 | 103.54 (7) | N1—C9A—C4A | 131.10 (13) |
| | | |
N1—C2—N21—C22 | 160.22 (14) | C2—N21—C22—O22 | 3.8 (2) |
S3—C2—N21—C22 | −20.61 (18) | | |
Hydrogen-bond geometry (Å, º) for (III) top
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···O4i | 0.855 (14) | 2.188 (14) | 3.0406 (16) | 174.5 (16) |
Symmetry code: (i) x, y, z−1. |
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As part of our search for new structures exhibiting an inhibitory potency towards members of the α/β-hydrolase family, we performed the present structure determinations. In this context, we were especially interested in inhibitors of the enzyme acetylcholinesterase (AChE) being currently used as major therapeutic agents to alleviate the symptoms of Morbus Alzheimer (Colombres et al., 2004; Muñoz-Torrero & Camps, 2006). This disease is characterized by a selective neuronal cell death probably caused by amyloid fibrils, as well as a loss of cholinergic transmission. AChE was found to be associated with such amyloid species and may contribute to their development (Alvarez et al., 1997, 1998; Inestrosa & Alarcon, 1998). In addition, the enzyme catalyzes the hydrolytic destruction of the neurotransmitter acetylcholine at cholinergic synapses (Cartaud et al., 2004; Silman & Sussman, 2005). A reduction of the activity of AChE leads to an increased bioavailability of acetylcholine at the synaptic cleft and an improvement of the cholinergic neurotransmission as well as the cognitive functions (Colombres et al., 2004; Muñoz-Torrero & Camps, 2006). Beside its central role in the therapy of Alzheimer's disease, AChE has been targeted in treatments for myasthenia gravis, glaucoma, obstipation and spasmolysis and to antagonize muscle relaxation in anesthesiology (Ibach & Haen, 2004). Compounds of several classes bearing a benzyl substituted piperidine moiety including donepezil (Aricept) have been characterized as inhibitors of AChE (Muñoz-Torrero & Camps, 2006). These findings resulted in the investigation and X-ray crystal structures of the N-benzyl-tetrahydropyrido-anellated thiophene derivatives (I)–(III), at 123 (2) K, that are reported here. Compounds (II) and (III) are potent inhibitors of AChE (IC50 values of 2.1 µM and 5.2 µM, respectively), whereas the enzyme is less affected by (I), i.e. the educt of (II) (IC50 = 10 µM). Full details of the synthesis and characterization of these compounds as well as their biological activity were published elsewhere (Pietsch & Gütschow, 2005).
The structure of (I) with the atomic numbering scheme is shown in Fig. 1. Selected parameters characterizing the geometry of the ureidothiophenecarboxylic ester unit of the two independent molecules are given in Table 1. This unit is planar with the ester group and the ureido group situated in the plane of the thiophene ring system, and torsion angles C2—C3—C31—O32 (C2'—C3'—C31'—O32') and C2—N2—C21—N21 (C2'—N2'—C21'—N21') of 177.93 (16)° [–175.24 (16)°] and -173.60 (17)° [174.37 (17)°], respectively. The mean deviation of the atoms from N21/C21/O21/N2/C2/S1/C7A/C7/C4/C3A/C3/C31/O31/O32/C32 (N21'/C21'/O21'/N2'/C2'/S1'/C7A'/C7'/C4'/C3A'/C3'/C31'/O31'/O32'/C32') plane is 0.044 Å (0.053 Å). The dihedral angles between the planes delineated by the above-mentioned atoms and all the non-H atoms of the phenyl moieties are 68.11 (5) and 67.11 (5)° in the two independent molecules of (I). The ester carbonyl group has a cis orientation with respect to the C2═C3 double bond. This leads to an intramolecular, resonance-assisted N2—H2···O31 hydrogen bond (Table 2), which locks the molecular conformation by forming a pseudo-six-membered ring and eliminates conformational flexibility (Gilli et al., 2000). The values of the H—A and D···A distances and the D—H···A angle (Table 2) characterize this bond as a strong hydrogen bond (Desiraju & Steiner, 1999; Steiner, 2002), and agree with relevant data (average values) for 11 β-enaminoesters forming intramolecular N—H···O hydrogen bonds [D···A = 2.70 (2) Å and D—H···A = 132 (4)°; Gilli et al., 2000]. In addition, the O31═C31 distance of 1.225 (2) Å [O31'═C31' = 1.222 (2) Å] in (I) is in accordance with the average value of C═O [1.221 (6) Å] for the above-mentioned β-enaminoesters, and can be calculated from the distance D···A by the equation C═O = a + b(D···A), with a = 2.14 (5) and b = -0.34 (2) (Gilli et al., 2000). This calculation yielded values of 1.227 and 1.231 Å for O31═C31 and O31'═C31', respectively, and agreed with the experimentally found data. The intramolecular hydrogen bond is weakened by the electron-attracting tert-butoxy group, which decreases the charge density and thus the proton affinity of the carbonyl O atom. This effect has been confirmed by calculations showing that the resonance assistance of hydrogen bonds in β-enaminoesters has become so weak that such hydrogen bonds are barely distinguishable from non-resonant ones (Gilli et al., 2000). The weakening of the intramolecular hydrogen bond in (I) is further supported by IR and NMR spectroscopic data. The band of the isolated N—H stretching vibration, ν NH, is only marginally shifted to a lower frequency from approximately 3400 cm-1 (Gilli et al., 2000) to 3247 cm-1 (Pietsch & Gütschow, 2005). Likewise, the σ N—H chemical shift obtained from an NMR measurement shows only a minor downfield shift from approximatately 7 p.p.m. (Gilli et al., 2000) to 11.09 p.p.m. (Pietsch & Gütschow, 2005). In contrast, very strong hydrogen bonds are characterized by the values 2.65 ≥ D···A ≥ 2.48 Å, 3200 ≥ ν NH ≥ 2340 cm-1 and 13 ≤ σ N—H ≤ 18 p.p.m. The latter value, obtained in solution (CDCl3), can be correlated with the solid-state D···A distance using the equation σ N—H = 91 (6) - 30 (2)(D···A) (Gilli et al., 2000), with the calculated values, i.e. 10.48 and 10.78 p.p.m., being in accordance with the experimental one. Molecules of (I) are interconnected by a framework of intermolecular C—H···O═C hydrogen bonds, C66—H66···O21' and C64'—H64'···O21, respectively, as shown in Fig. 2 and detailed in Table 2. The values of the H—A and D···A distances, as well as the D—H···A angle, characterize these nearly linear hydrogen bonds (D—H···A = 159 and 160°) as weak ones (Desiraju, 1996; Desiraju & Steiner, 1999; Steiner, 2002) and agree with data described in the literature (Cox, 2002; Pigge et al., 1999; Schulze et al., 2005; Vasu et al., 2004).
Compound (II) is the first thieno[1,3]oxazin-4-one that has been characterized by X-ray crystallography. The synthesis of (II) was performed by treating (I) with trifluoroacetic acid and trifluoroacetic anhydride, resulting in deesterification and cyclocondenstaion (Pietsch & Gütschow, 2005). The structure of (II) with the atomic numbering scheme and the arrangement of the molecules in the asymmetric unit are shown in Figs. 3 and 4, respectively; selected bond distances and angles are given in Table 3. The thienoxazinone system in (II) is essentially planar, in agreement with earlier experimental data of bioisosteric benzoxazinones (Crane & Rogerson, 2004; Gütschow et al., 1998; Kovalevsky & Ponomarev, 2000; Kovalevsky et al., 2000; Yadav et al., 2002). The mean deviation of the atoms from the plane formed by this heterocyclic moiety and the atoms N2, C5 and C8 is 0.015 Å, with C8 deviating by a maximum of 0.041 Å. The aforementioned plane and the phenyl ring of the benzyl group in (II) are virtually perpendicular to each other, as shown by the dihedral angle of 75.50 (3)°. In compound (II), the O3—C2 bond is shorter than the O3—C4 bond. Moreover, the bond angles at C2 and C4 are distorted from their ideal values of 120°. Such observations were explained as a result of the concerted electronic effects of adjactent substituents (Kovalevsky & Ponomarev, 2000). Similarly to the molecules of (I), the crystal structure of (II) is stabilized by weak intermolecular C—H···O═C hydrogen bonds formed by C73, H73 and O4 (Table 4 and Fig. 4).
In contrast to the thieno[1,3]oxazin-4-one heterocycle in compound (II), the isosteric thieno[1,3]thiazin-4-one system in (III) (Table 5 and Fig. 5) is less planar. This is reflected in a mean deviation of the atoms from the plane formed by this system and atoms N21, C5 and C8, taking a value of 0.085 Å, with O4 deviating by a maximum of 0.229 Å. The dihedral angles between this plane and the phenyl rings of the benzyl and benzoyl groups are 55.69 (4) and 53.90 (4)°, respectively. The replacement of the ring O atom in the oxazinone (II) by an S atom in the thiazinone (III) results in a significant distortion of the bond angles at C2, C4 and C9A from 120° (Table 5), with the obtained values agreeing with reported data (Evain et al., 2002; Lamiot et al., 1992). As N21, and not N1, was found to be hydrogen-substituted, the structure of the tautomeric form (III) based on IR and NMR data (Pietsch & Gütschow, 2005) has been proved true. The tautomer containing an exocyclic C2═N21 double bond is not observed and thus an intramolecular N1—H1···O22 hydrogen bond cannot be formed. Instead, a non-binding intramolecular interaction between atoms S3 and O22 has been taken into account as already shown for 4-acylimino-2-aminothieno[2,3-d][1,3]thiazines (Gütschow et al., 1992). Such interaction was not found as the S3···O22 distance exceeds the described value, and the system formed by atoms S3, C2, N21, C22 and O22 is less planar, with C2 deviating by a maximum of 0.176 Å. In contrast to compounds (I) and (II), molecules of (III) are linked via intermolecular N—H···O═C hydrogen bonds originating from N21, H21 and O4 (Table 6 and Fig. 6). The values of the N···O contact distance as a measure of the hydrogen-bond strength, and the C4═O4 bond length, taken as an indicator of π-delocalization in an ···O═Rn—N—H··· heteroconjugated system (Tables 5 and 6), characterize this intermolecular interaction as not assisted by resonance (Bertolasi et al., 1995, 1998).