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Crystals of 1-(diaminomethylene)thiouron-1-ium chloride, C2H7N4S+·Cl-, 1-(diaminomethylene)thiouron-1-ium bromide, C2H7N4S+·Br-, and 1-(diaminomethylene)thiouron-1-ium iodide, C2H7N4S+·I-, are built up from the nonplanar 1-(diaminomethylene)thiouron-1-ium cation and the respective halogenide anion. The conformation of the 1-(diaminomethylene)thiouron-1-ium cation in each case is twisted. Both arms of the cation are planar and rotated in opposite directions around the C-N bonds involving the central N atom. The dihedral angles describing the twisted conformation are 22.9 (1), 15.2 (1) and 4.2 (1)° in the chloride, bromide and iodide salts, respectively. Ionic and extensive hydrogen-bonding interactions join oppositely charged units into a supramolecular network. The aim of the investigation is to study the influence of the size of the ionic radii of the Cl-, Br- and I- ions on the dimensionality of the hydrogen-bonding network of the 1-(diaminomethylene)thiouron-1-ium cation. The 1-(diaminomethylene)thiouron-1-ium system should be of use in crystal engineering to form multidimensional networks.
Supporting information
CCDC references: 690190; 690191; 690192
Suitable crystals of (Ia), (Ib) and (Ic) were obtained from
2-imino-4-thiobiuret (purchased from Aldrich) dissolved in 5% aqueous
solutions of HCl, HBr and HI. [Quantities? reaction conditions?]
The H atoms were located from difference Fourier maps and and their positions
refined.
For all compounds, data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell refinement: CrysAlis CCD (Oxford Diffraction, 2006); data reduction: CrysAlis RED (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2006); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
(Ia) 1-(diaminomethylene)thiouron-1-ium chloride
top
Crystal data top
C2H7N4S+·Cl− | F(000) = 320 |
Mr = 154.63 | Dx = 1.567 Mg m−3 Dm = 1.56 Mg m−3 Dm measured by flotation |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 562 reflections |
a = 6.517 (1) Å | θ = 2.8–28.4° |
b = 6.807 (1) Å | µ = 0.80 mm−1 |
c = 14.777 (3) Å | T = 295 K |
β = 90.36 (2)° | Paralellepiped, colourless |
V = 655.51 (19) Å3 | 0.37 × 0.22 × 0.17 mm |
Z = 4 | |
Data collection top
Kuma KM-4 with area CCD detector diffractometer | 1635 independent reflections |
Radiation source: fine-focus sealed tube | 1164 reflections with σ > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
Detector resolution: 1024x1024 with blocks 2x2 pixels mm-1 | θmax = 28.4°, θmin = 2.8° |
ω–scan | h = −8→8 |
Absorption correction: analytical (face-indexed; SHELXTL; Sheldrick, 2008) | k = −9→8 |
Tmin = 0.760, Tmax = 0.878 | l = −18→19 |
6665 measured reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | Only H-atom coordinates refined |
wR(F2) = 0.062 | w = 1/[σ2(Fo2) + (0.0275P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.99 | (Δ/σ)max < 0.001 |
1635 reflections | Δρmax = 0.21 e Å−3 |
95 parameters | Δρmin = −0.20 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.041 (3) |
Crystal data top
C2H7N4S+·Cl− | V = 655.51 (19) Å3 |
Mr = 154.63 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.517 (1) Å | µ = 0.80 mm−1 |
b = 6.807 (1) Å | T = 295 K |
c = 14.777 (3) Å | 0.37 × 0.22 × 0.17 mm |
β = 90.36 (2)° | |
Data collection top
Kuma KM-4 with area CCD detector diffractometer | 1635 independent reflections |
Absorption correction: analytical (face-indexed; SHELXTL; Sheldrick, 2008) | 1164 reflections with σ > 2σ(I) |
Tmin = 0.760, Tmax = 0.878 | Rint = 0.031 |
6665 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.062 | Only H-atom coordinates refined |
S = 0.99 | Δρmax = 0.21 e Å−3 |
1635 reflections | Δρmin = −0.20 e Å−3 |
95 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cl1 | 0.51493 (6) | 0.72135 (7) | 0.41465 (3) | 0.04362 (16) | |
S1 | 0.89198 (7) | 0.05688 (7) | 0.26804 (3) | 0.03941 (16) | |
C1 | 0.7581 (2) | 0.2129 (2) | 0.33105 (10) | 0.0295 (4) | |
N1 | 0.8064 (2) | 0.2597 (2) | 0.42000 (9) | 0.0339 (4) | |
H1 | 0.719 (3) | 0.302 (3) | 0.4489 (12) | 0.041* | |
C2 | 0.9855 (2) | 0.2404 (2) | 0.46644 (10) | 0.0293 (4) | |
N2 | 0.5888 (2) | 0.3002 (3) | 0.30276 (11) | 0.0444 (4) | |
H21 | 0.532 (3) | 0.393 (3) | 0.3335 (12) | 0.053* | |
H22 | 0.553 (3) | 0.277 (3) | 0.2486 (14) | 0.053* | |
N3 | 0.9824 (3) | 0.2867 (3) | 0.55275 (10) | 0.0402 (4) | |
H31 | 0.869 (3) | 0.304 (3) | 0.5781 (13) | 0.048* | |
H32 | 1.084 (3) | 0.269 (3) | 0.5815 (13) | 0.048* | |
N4 | 1.1546 (2) | 0.1858 (3) | 0.42755 (11) | 0.0436 (4) | |
H41 | 1.150 (3) | 0.147 (3) | 0.3760 (13) | 0.052* | |
H42 | 1.268 (3) | 0.190 (3) | 0.4549 (13) | 0.052* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cl1 | 0.0321 (2) | 0.0687 (4) | 0.0300 (2) | −0.0027 (2) | −0.00419 (17) | −0.0038 (2) |
S1 | 0.0482 (3) | 0.0429 (3) | 0.0271 (2) | 0.0086 (2) | −0.00226 (18) | −0.00554 (19) |
C1 | 0.0305 (8) | 0.0304 (10) | 0.0277 (8) | −0.0028 (7) | −0.0030 (7) | 0.0011 (7) |
N1 | 0.0267 (7) | 0.0491 (10) | 0.0260 (7) | 0.0046 (7) | −0.0007 (6) | −0.0085 (6) |
C2 | 0.0292 (8) | 0.0306 (10) | 0.0281 (8) | −0.0040 (7) | −0.0036 (7) | 0.0023 (7) |
N2 | 0.0452 (9) | 0.0523 (11) | 0.0354 (8) | 0.0157 (8) | −0.0129 (7) | −0.0094 (8) |
N3 | 0.0375 (8) | 0.0553 (11) | 0.0277 (8) | −0.0032 (9) | −0.0053 (6) | −0.0007 (7) |
N4 | 0.0278 (8) | 0.0638 (12) | 0.0389 (8) | 0.0025 (8) | −0.0059 (7) | −0.0103 (8) |
Geometric parameters (Å, º) top
S1—C1 | 1.6636 (17) | N2—H21 | 0.86 (2) |
C1—N2 | 1.319 (2) | N2—H22 | 0.85 (2) |
C1—N1 | 1.3866 (19) | N3—H31 | 0.84 (2) |
N1—C2 | 1.3565 (19) | N3—H32 | 0.79 (2) |
N1—H1 | 0.773 (17) | N4—H41 | 0.806 (19) |
C2—N4 | 1.300 (2) | N4—H42 | 0.844 (19) |
C2—N3 | 1.314 (2) | | |
| | | |
N2—C1—N1 | 112.45 (15) | C1—N2—H21 | 121.5 (13) |
N2—C1—S1 | 123.43 (12) | C1—N2—H22 | 116.1 (13) |
N1—C1—S1 | 124.07 (12) | H21—N2—H22 | 121.2 (18) |
C2—N1—C1 | 130.32 (14) | C2—N3—H31 | 119.1 (13) |
C2—N1—H1 | 113.2 (14) | C2—N3—H32 | 117.8 (14) |
C1—N1—H1 | 116.5 (14) | H31—N3—H32 | 121.0 (19) |
N4—C2—N3 | 121.03 (15) | C2—N4—H41 | 118.8 (14) |
N4—C2—N1 | 122.20 (15) | C2—N4—H42 | 121.5 (13) |
N3—C2—N1 | 116.73 (15) | H41—N4—H42 | 119.6 (19) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Cl1i | 0.773 (17) | 2.539 (18) | 3.2305 (16) | 149.9 (18) |
N2—H21···Cl1 | 0.86 (2) | 2.54 (2) | 3.3458 (18) | 156.0 (16) |
N2—H22···Cl1ii | 0.85 (2) | 2.48 (2) | 3.3225 (18) | 174.2 (18) |
N3—H31···Cl1i | 0.84 (2) | 2.51 (2) | 3.2804 (18) | 152.9 (17) |
N3—H32···Cl1iii | 0.79 (2) | 2.62 (2) | 3.3084 (18) | 146.9 (18) |
N4—H41···S1 | 0.806 (19) | 2.390 (19) | 3.0339 (17) | 137.5 (18) |
N4—H42···Cl1iii | 0.844 (19) | 2.46 (2) | 3.2268 (17) | 152.2 (17) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, y−1/2, −z+1/2; (iii) −x+2, −y+1, −z+1. |
(Ib) 1-(diaminomethylene)thiouron-1-ium bromide
top
Crystal data top
C2H7N4S+·Br− | Z = 2 |
Mr = 199.09 | F(000) = 196 |
Triclinic, P1 | Dx = 1.921 Mg m−3 Dm = 1.92 Mg m−3 Dm measured by flotation |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 4.9661 (9) Å | Cell parameters from 827 reflections |
b = 7.4841 (17) Å | θ = 3.4–29.4° |
c = 9.5739 (19) Å | µ = 6.18 mm−1 |
α = 94.220 (14)° | T = 295 K |
β = 90.091 (11)° | Paralellepiped, colourless |
γ = 104.012 (15)° | 0.32 × 0.22 × 0.16 mm |
V = 344.23 (12) Å3 | |
Data collection top
Kuma KM-4 with area CCD detector diffractometer | 1737 independent reflections |
Radiation source: fine-focus sealed tube | 1295 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
Detector resolution: 1024x1024 with blocks 2x2 pixels mm-1 | θmax = 29.4°, θmin = 3.4° |
ω–scan | h = −5→6 |
Absorption correction: analytical (face-indexed; SHELXTL; Sheldrick, 2008) | k = −9→9 |
Tmin = 0.244, Tmax = 0.441 | l = −12→12 |
4034 measured reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Only H-atom coordinates refined |
wR(F2) = 0.085 | w = 1/[σ2(Fo2) + (0.0481P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.99 | (Δ/σ)max = 0.005 |
1737 reflections | Δρmax = 0.76 e Å−3 |
95 parameters | Δρmin = −0.51 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.079 (6) |
Crystal data top
C2H7N4S+·Br− | γ = 104.012 (15)° |
Mr = 199.09 | V = 344.23 (12) Å3 |
Triclinic, P1 | Z = 2 |
a = 4.9661 (9) Å | Mo Kα radiation |
b = 7.4841 (17) Å | µ = 6.18 mm−1 |
c = 9.5739 (19) Å | T = 295 K |
α = 94.220 (14)° | 0.32 × 0.22 × 0.16 mm |
β = 90.091 (11)° | |
Data collection top
Kuma KM-4 with area CCD detector diffractometer | 1737 independent reflections |
Absorption correction: analytical (face-indexed; SHELXTL; Sheldrick, 2008) | 1295 reflections with I > 2σ(I) |
Tmin = 0.244, Tmax = 0.441 | Rint = 0.017 |
4034 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.085 | Only H-atom coordinates refined |
S = 0.99 | Δρmax = 0.76 e Å−3 |
1737 reflections | Δρmin = −0.51 e Å−3 |
95 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Br1 | 0.78860 (7) | 0.69979 (4) | 0.10439 (3) | 0.05125 (18) | |
S1 | 0.1687 (2) | 0.25428 (13) | 0.48486 (9) | 0.0536 (3) | |
C1 | 0.2765 (6) | 0.3567 (4) | 0.3381 (3) | 0.0370 (6) | |
N1 | 0.4595 (6) | 0.3053 (4) | 0.2455 (3) | 0.0464 (6) | |
H1 | 0.545 (8) | 0.397 (5) | 0.196 (4) | 0.056* | |
N2 | 0.1940 (7) | 0.5028 (4) | 0.3028 (3) | 0.0540 (7) | |
H21 | 0.244 (8) | 0.554 (5) | 0.230 (4) | 0.065* | |
H22 | 0.067 (8) | 0.542 (5) | 0.366 (4) | 0.065* | |
C2 | 0.5473 (6) | 0.1463 (4) | 0.2300 (3) | 0.0407 (7) | |
N3 | 0.7246 (8) | 0.1378 (5) | 0.1304 (4) | 0.0591 (8) | |
H31 | 0.782 (8) | 0.049 (6) | 0.118 (4) | 0.071* | |
H32 | 0.777 (8) | 0.236 (5) | 0.080 (4) | 0.071* | |
N4 | 0.4618 (6) | 0.0105 (4) | 0.3068 (3) | 0.0546 (8) | |
H41 | 0.549 (8) | −0.092 (6) | 0.289 (4) | 0.066* | |
H42 | 0.357 (9) | 0.033 (6) | 0.368 (4) | 0.066* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Br1 | 0.0621 (3) | 0.0501 (3) | 0.0452 (2) | 0.01754 (17) | 0.00881 (15) | 0.01380 (15) |
S1 | 0.0645 (6) | 0.0557 (5) | 0.0500 (5) | 0.0273 (4) | 0.0219 (4) | 0.0213 (4) |
C1 | 0.0341 (14) | 0.0353 (15) | 0.0425 (15) | 0.0090 (12) | 0.0044 (12) | 0.0059 (13) |
N1 | 0.0595 (17) | 0.0462 (15) | 0.0403 (14) | 0.0219 (13) | 0.0146 (12) | 0.0159 (12) |
N2 | 0.068 (2) | 0.0515 (17) | 0.0526 (17) | 0.0297 (15) | 0.0117 (15) | 0.0176 (14) |
C2 | 0.0427 (16) | 0.0420 (16) | 0.0390 (15) | 0.0141 (13) | 0.0008 (13) | 0.0016 (13) |
N3 | 0.070 (2) | 0.0545 (19) | 0.0586 (18) | 0.0255 (17) | 0.0214 (15) | 0.0063 (15) |
N4 | 0.0586 (19) | 0.0464 (16) | 0.064 (2) | 0.0213 (15) | 0.0182 (15) | 0.0113 (15) |
Geometric parameters (Å, º) top
S1—C1 | 1.676 (3) | C2—N4 | 1.286 (4) |
C1—N2 | 1.322 (4) | C2—N3 | 1.308 (4) |
C1—N1 | 1.372 (4) | N3—H31 | 0.79 (4) |
N1—C2 | 1.362 (4) | N3—H32 | 0.90 (4) |
N1—H1 | 0.89 (4) | N4—H41 | 0.97 (4) |
N2—H21 | 0.83 (4) | N4—H42 | 0.82 (4) |
N2—H22 | 0.96 (4) | | |
| | | |
N2—C1—N1 | 113.0 (3) | N4—C2—N3 | 121.2 (3) |
N2—C1—S1 | 121.6 (2) | N4—C2—N1 | 123.0 (3) |
N1—C1—S1 | 125.4 (2) | N3—C2—N1 | 115.9 (3) |
C2—N1—C1 | 130.2 (3) | C2—N3—H31 | 119 (3) |
C2—N1—H1 | 117 (2) | C2—N3—H32 | 117 (3) |
C1—N1—H1 | 112 (2) | H31—N3—H32 | 123 (4) |
C1—N2—H21 | 123 (3) | C2—N4—H41 | 115 (2) |
C1—N2—H22 | 114 (2) | C2—N4—H42 | 113 (3) |
H21—N2—H22 | 123 (4) | H41—N4—H42 | 132 (4) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Br1 | 0.89 (4) | 2.51 (4) | 3.387 (3) | 167 (3) |
N2—H21···Br1 | 0.83 (4) | 2.95 (4) | 3.580 (4) | 134 (3) |
N2—H22···S1i | 0.96 (4) | 2.50 (4) | 3.426 (3) | 161 (3) |
N3—H31···Br1ii | 0.79 (4) | 2.61 (4) | 3.361 (3) | 159 (4) |
N3—H32···Br1iii | 0.90 (4) | 2.76 (4) | 3.372 (4) | 126 (3) |
N4—H41···Br1ii | 0.97 (4) | 2.73 (4) | 3.601 (3) | 149 (3) |
N4—H42···S1 | 0.82 (4) | 2.32 (4) | 3.031 (3) | 147 (4) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x, y−1, z; (iii) −x+2, −y+1, −z. |
(Ic) 1-(diaminomethylene)thiouron-1-ium iodide
top
Crystal data top
C2H7N4S+·I− | F(000) = 464 |
Mr = 246.08 | Dx = 2.153 Mg m−3 Dm = 2.15 Mg m−3 Dm measured by flotation |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 876 reflections |
a = 10.929 (3) Å | θ = 3.3–29.0° |
b = 7.875 (1) Å | µ = 4.41 mm−1 |
c = 9.456 (2) Å | T = 295 K |
β = 111.10 (1)° | Paralellepiped, colourless |
V = 759.3 (3) Å3 | 0.38 × 0.24 × 0.22 mm |
Z = 4 | |
Data collection top
Kuma KM-4 with area CCD detector diffractometer | 2001 independent reflections |
Radiation source: fine-focus sealed tube | 1785 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.013 |
Detector resolution: 1024x1024 with blocks 2x2 pixels mm-1 | θmax = 29.0°, θmin = 3.3° |
ω–scan | h = −14→14 |
Absorption correction: analytical (face-indexed; SHELXTL; Sheldrick, 2008) | k = −10→10 |
Tmin = 0.286, Tmax = 0.445 | l = −9→12 |
10077 measured reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.021 | Only H-atom coordinates refined |
wR(F2) = 0.055 | w = 1/[σ2(Fo2) + (0.0332P)2 + 0.3719P] where P = (Fo2 + 2Fc2)/3 |
S = 1.00 | (Δ/σ)max = 0.004 |
2001 reflections | Δρmax = 0.81 e Å−3 |
95 parameters | Δρmin = −0.68 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0257 (9) |
Crystal data top
C2H7N4S+·I− | V = 759.3 (3) Å3 |
Mr = 246.08 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.929 (3) Å | µ = 4.41 mm−1 |
b = 7.875 (1) Å | T = 295 K |
c = 9.456 (2) Å | 0.38 × 0.24 × 0.22 mm |
β = 111.10 (1)° | |
Data collection top
Kuma KM-4 with area CCD detector diffractometer | 2001 independent reflections |
Absorption correction: analytical (face-indexed; SHELXTL; Sheldrick, 2008) | 1785 reflections with I > 2σ(I) |
Tmin = 0.286, Tmax = 0.445 | Rint = 0.013 |
10077 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.021 | 0 restraints |
wR(F2) = 0.055 | Only H-atom coordinates refined |
S = 1.00 | Δρmax = 0.81 e Å−3 |
2001 reflections | Δρmin = −0.68 e Å−3 |
95 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
I1 | 0.373664 (15) | 0.34350 (2) | 0.591594 (16) | 0.04108 (9) | |
S1 | 0.04026 (6) | 0.76529 (8) | 0.09361 (7) | 0.04611 (16) | |
C1 | 0.1532 (2) | 0.6433 (3) | 0.2193 (3) | 0.0327 (4) | |
N1 | 0.2498 (2) | 0.7006 (3) | 0.3494 (2) | 0.0386 (4) | |
H1 | 0.293 (3) | 0.627 (4) | 0.411 (4) | 0.046* | |
N2 | 0.1595 (3) | 0.4770 (3) | 0.2012 (3) | 0.0462 (5) | |
H21 | 0.215 (3) | 0.414 (5) | 0.268 (4) | 0.055* | |
H22 | 0.106 (3) | 0.428 (4) | 0.123 (4) | 0.055* | |
C2 | 0.2737 (2) | 0.8575 (3) | 0.4123 (3) | 0.0343 (4) | |
N3 | 0.3736 (2) | 0.8725 (4) | 0.5399 (3) | 0.0520 (6) | |
H31 | 0.386 (3) | 0.964 (6) | 0.586 (4) | 0.062* | |
H32 | 0.420 (4) | 0.797 (5) | 0.575 (4) | 0.062* | |
N4 | 0.1994 (2) | 0.9890 (3) | 0.3521 (3) | 0.0455 (5) | |
H41 | 0.220 (3) | 1.083 (5) | 0.392 (4) | 0.055* | |
H42 | 0.140 (3) | 0.978 (4) | 0.269 (4) | 0.055* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
I1 | 0.04361 (12) | 0.03428 (11) | 0.03844 (12) | −0.00127 (5) | 0.00640 (7) | 0.00020 (5) |
S1 | 0.0429 (3) | 0.0382 (3) | 0.0424 (3) | 0.0049 (2) | −0.0025 (3) | −0.0033 (2) |
C1 | 0.0342 (10) | 0.0313 (10) | 0.0334 (10) | −0.0004 (8) | 0.0132 (9) | −0.0031 (8) |
N1 | 0.0386 (10) | 0.0320 (9) | 0.0365 (10) | 0.0079 (8) | 0.0029 (8) | −0.0025 (8) |
N2 | 0.0548 (13) | 0.0310 (9) | 0.0420 (11) | −0.0001 (9) | 0.0045 (10) | −0.0022 (8) |
C2 | 0.0343 (10) | 0.0360 (11) | 0.0326 (10) | −0.0022 (8) | 0.0120 (9) | −0.0037 (8) |
N3 | 0.0427 (12) | 0.0492 (13) | 0.0489 (13) | 0.0041 (10) | −0.0020 (10) | −0.0180 (11) |
N4 | 0.0558 (13) | 0.0286 (9) | 0.0422 (11) | −0.0003 (9) | 0.0056 (10) | −0.0039 (8) |
Geometric parameters (Å, º) top
S1—C1 | 1.674 (2) | C2—N3 | 1.309 (3) |
C1—N2 | 1.326 (3) | C2—N4 | 1.312 (3) |
C1—N1 | 1.377 (3) | N3—H31 | 0.83 (4) |
N1—C2 | 1.355 (3) | N3—H32 | 0.78 (4) |
N1—H1 | 0.84 (3) | N4—H41 | 0.82 (4) |
N2—H21 | 0.86 (4) | N4—H42 | 0.82 (3) |
N2—H22 | 0.85 (4) | | |
| | | |
N2—C1—N1 | 112.3 (2) | N3—C2—N4 | 120.6 (2) |
N2—C1—S1 | 122.29 (19) | N3—C2—N1 | 116.9 (2) |
N1—C1—S1 | 125.36 (16) | N4—C2—N1 | 122.5 (2) |
C2—N1—C1 | 130.9 (2) | C2—N3—H31 | 119 (2) |
C2—N1—H1 | 111 (2) | C2—N3—H32 | 122 (3) |
C1—N1—H1 | 117 (2) | H31—N3—H32 | 119 (4) |
C1—N2—H21 | 122 (2) | C2—N4—H41 | 119 (2) |
C1—N2—H22 | 121 (2) | C2—N4—H42 | 119 (2) |
H21—N2—H22 | 117 (3) | H41—N4—H42 | 122 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···I1 | 0.84 (3) | 2.75 (3) | 3.571 (2) | 165 (3) |
N2—H21···I1 | 0.86 (4) | 2.98 (4) | 3.741 (3) | 149 (3) |
N2—H22···S1i | 0.85 (4) | 2.59 (4) | 3.434 (2) | 171 (3) |
N3—H31···I1ii | 0.83 (4) | 2.99 (5) | 3.741 (3) | 151 (3) |
N4—H41···I1ii | 0.82 (4) | 2.88 (4) | 3.667 (2) | 160 (3) |
N4—H42···S1 | 0.82 (3) | 2.33 (3) | 3.007 (2) | 140 (3) |
Symmetry codes: (i) −x, −y+1, −z; (ii) x, y+1, z. |
Experimental details
| (Ia) | (Ib) | (Ic) |
Crystal data |
Chemical formula | C2H7N4S+·Cl− | C2H7N4S+·Br− | C2H7N4S+·I− |
Mr | 154.63 | 199.09 | 246.08 |
Crystal system, space group | Monoclinic, P21/c | Triclinic, P1 | Monoclinic, P21/c |
Temperature (K) | 295 | 295 | 295 |
a, b, c (Å) | 6.517 (1), 6.807 (1), 14.777 (3) | 4.9661 (9), 7.4841 (17), 9.5739 (19) | 10.929 (3), 7.875 (1), 9.456 (2) |
α, β, γ (°) | 90, 90.36 (2), 90 | 94.220 (14), 90.091 (11), 104.012 (15) | 90, 111.10 (1), 90 |
V (Å3) | 655.51 (19) | 344.23 (12) | 759.3 (3) |
Z | 4 | 2 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.80 | 6.18 | 4.41 |
Crystal size (mm) | 0.37 × 0.22 × 0.17 | 0.32 × 0.22 × 0.16 | 0.38 × 0.24 × 0.22 |
|
Data collection |
Diffractometer | Kuma KM-4 with area CCD detector diffractometer | Kuma KM-4 with area CCD detector diffractometer | Kuma KM-4 with area CCD detector diffractometer |
Absorption correction | Analytical (face-indexed; SHELXTL; Sheldrick, 2008) | Analytical (face-indexed; SHELXTL; Sheldrick, 2008) | Analytical (face-indexed; SHELXTL; Sheldrick, 2008) |
Tmin, Tmax | 0.760, 0.878 | 0.244, 0.441 | 0.286, 0.445 |
No. of measured, independent and observed reflections | 6665, 1635, 1164 [σ > 2σ(I)] | 4034, 1737, 1295 [I > 2σ(I)] | 10077, 2001, 1785 [I > 2σ(I)] |
Rint | 0.031 | 0.017 | 0.013 |
(sin θ/λ)max (Å−1) | 0.669 | 0.690 | 0.682 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.062, 0.99 | 0.036, 0.085, 0.99 | 0.021, 0.055, 1.00 |
No. of reflections | 1635 | 1737 | 2001 |
No. of parameters | 95 | 95 | 95 |
H-atom treatment | Only H-atom coordinates refined | Only H-atom coordinates refined | Only H-atom coordinates refined |
Δρmax, Δρmin (e Å−3) | 0.21, −0.20 | 0.76, −0.51 | 0.81, −0.68 |
Selected geometric parameters (Å, º) for (Ia) topS1—C1 | 1.6636 (17) | N1—C2 | 1.3565 (19) |
C1—N2 | 1.319 (2) | C2—N4 | 1.300 (2) |
C1—N1 | 1.3866 (19) | C2—N3 | 1.314 (2) |
| | | |
N2—C1—N1 | 112.45 (15) | N4—C2—N3 | 121.03 (15) |
N2—C1—S1 | 123.43 (12) | N4—C2—N1 | 122.20 (15) |
N1—C1—S1 | 124.07 (12) | N3—C2—N1 | 116.73 (15) |
C2—N1—C1 | 130.32 (14) | | |
Hydrogen-bond geometry (Å, º) for (Ia) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Cl1i | 0.773 (17) | 2.539 (18) | 3.2305 (16) | 149.9 (18) |
N2—H21···Cl1 | 0.86 (2) | 2.54 (2) | 3.3458 (18) | 156.0 (16) |
N2—H22···Cl1ii | 0.85 (2) | 2.48 (2) | 3.3225 (18) | 174.2 (18) |
N3—H31···Cl1i | 0.84 (2) | 2.51 (2) | 3.2804 (18) | 152.9 (17) |
N3—H32···Cl1iii | 0.79 (2) | 2.62 (2) | 3.3084 (18) | 146.9 (18) |
N4—H41···S1 | 0.806 (19) | 2.390 (19) | 3.0339 (17) | 137.5 (18) |
N4—H42···Cl1iii | 0.844 (19) | 2.46 (2) | 3.2268 (17) | 152.2 (17) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, y−1/2, −z+1/2; (iii) −x+2, −y+1, −z+1. |
Selected geometric parameters (Å, º) for (Ib) topS1—C1 | 1.676 (3) | N1—C2 | 1.362 (4) |
C1—N2 | 1.322 (4) | C2—N4 | 1.286 (4) |
C1—N1 | 1.372 (4) | C2—N3 | 1.308 (4) |
| | | |
N2—C1—N1 | 113.0 (3) | N4—C2—N3 | 121.2 (3) |
N2—C1—S1 | 121.6 (2) | N4—C2—N1 | 123.0 (3) |
N1—C1—S1 | 125.4 (2) | N3—C2—N1 | 115.9 (3) |
C2—N1—C1 | 130.2 (3) | | |
Hydrogen-bond geometry (Å, º) for (Ib) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Br1 | 0.89 (4) | 2.51 (4) | 3.387 (3) | 167 (3) |
N2—H21···Br1 | 0.83 (4) | 2.95 (4) | 3.580 (4) | 134 (3) |
N2—H22···S1i | 0.96 (4) | 2.50 (4) | 3.426 (3) | 161 (3) |
N3—H31···Br1ii | 0.79 (4) | 2.61 (4) | 3.361 (3) | 159 (4) |
N3—H32···Br1iii | 0.90 (4) | 2.76 (4) | 3.372 (4) | 126 (3) |
N4—H41···Br1ii | 0.97 (4) | 2.73 (4) | 3.601 (3) | 149 (3) |
N4—H42···S1 | 0.82 (4) | 2.32 (4) | 3.031 (3) | 147 (4) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x, y−1, z; (iii) −x+2, −y+1, −z. |
Selected geometric parameters (Å, º) for (Ic) topS1—C1 | 1.674 (2) | N1—C2 | 1.355 (3) |
C1—N2 | 1.326 (3) | C2—N3 | 1.309 (3) |
C1—N1 | 1.377 (3) | C2—N4 | 1.312 (3) |
| | | |
N2—C1—N1 | 112.3 (2) | N3—C2—N4 | 120.6 (2) |
N2—C1—S1 | 122.29 (19) | N3—C2—N1 | 116.9 (2) |
N1—C1—S1 | 125.36 (16) | N4—C2—N1 | 122.5 (2) |
C2—N1—C1 | 130.9 (2) | | |
Hydrogen-bond geometry (Å, º) for (Ic) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···I1 | 0.84 (3) | 2.75 (3) | 3.571 (2) | 165 (3) |
N2—H21···I1 | 0.86 (4) | 2.98 (4) | 3.741 (3) | 149 (3) |
N2—H22···S1i | 0.85 (4) | 2.59 (4) | 3.434 (2) | 171 (3) |
N3—H31···I1ii | 0.83 (4) | 2.99 (5) | 3.741 (3) | 151 (3) |
N4—H41···I1ii | 0.82 (4) | 2.88 (4) | 3.667 (2) | 160 (3) |
N4—H42···S1 | 0.82 (3) | 2.33 (3) | 3.007 (2) | 140 (3) |
Symmetry codes: (i) −x, −y+1, −z; (ii) x, y+1, z. |
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The oresent work continues our investigations of the characterization of the compounds that in solids form multiple hydrogen-bonding systems (Janczak & Perpétuo, 2008a; Perpétuo & Janczak, 2007, 2008; Janczak & Kubiak, 2005a,b). Previously, we have investigated the crystal structure of commercially available 2-imino-4-thiobiuret (Aldrich, CAS No. 2114–02–05) and stated that it exists in the tautomeric form, i.e. 1-(diaminomethylene)thiourea (Janczak & Perpétuo, 2008b). 2-Iminio-4-thiourea and its tautomer have several potential coordinating modes, since they can act as N,N- or N,S-donor ligands and can form several different complexes with metal ions. The coordination of metals by this ligand is possible by either the neutral or a deprotonated (anionic) form. A search of the Cambridge Structural Database (Version 5.29 of November 2007; Allen, 2002) for structures containing this ligand yielded only three structures of Pt complexes in which Pt is coordinated by 2-imino-4-thiobiuret or its deprotonated form (Doxiadi et al., 2003). Besides these known Pt complexes with neutral and deproronated negatively charged ligands, 2-iminio-4-thiobiuret and its tautomer [i.e. 1-(diaminomethylene)thiourea] can form salts, since they contain an N atom with a lone pair of electron, which can accept an H atom forming a positively charged C2H7N4S+ unit. In the present work, we investigate the crystal structures of three salts, namely 1-(diaminomethylene)thiouron-1-ium chloride, (Ia), bromide, (Ib), and iodide, (Ic). In addition the X-ray geometry and the conformation of the protonated C2H7N4S+ cation is compared with that in the gas-phase, as predicted for an isolated cation by density functional theory (Frisch et al., 1998), as well as with the geometry of the neutral C2H6N4S molecule reported previously (Janczak & Perpétuo, 2008b). Ab-initio molecular orbital (MO) calculations were performed at the B3LYP/6–31+G* level and the results are illustrated in Fig. 1.
The asymmetric units of the title salts are illustrated in Fig. 2. The geometry of the 1-(diaminomethylene)thiouron-1-ium cation in these salts is not planar. However, both arms of the cation, containing atoms N1, C2, N3 and N4, and atoms N1, C1, N2 and S1, are planar. The deviations of the non-H atoms from these planes are smaller than 0.029 (2) and 0.014 (2) Å, respectively. The two arms of the cation are oppositely turned around the C—N bonds involving the central N1 atom. Thus the conformation of the 1-(diaminomethylene)thiouron-1-ium cation is twisted. The dihedral angles between the planes are 22.9 (1), 15.2 (1) and 4.2 (1)° in the chloride, bromide and iodide salts, respectively. The rotation angles correlate with the electronegativity of the halogen: 3.16 for Cl, 2.96 for Br and 2.66 for I (Pauling, 1960). A similar twisted conformation is observed in the crystal structure of neutral 1-(diaminomethylene)thiourea [22.2 (1)°; Janczak & Perpétuo, 2008b]. The gas-phase conformation of the 1-(diaminomethylene)thiouron-1-ium cation as shown by ab-initio MO calculations is also twisted, with a dihedral angle of 6.2°. The difference between the conformation of the cation in the crystal and in the gas phase results from the interionic and hydrogen-bonding interactions present in the crystals.
In the present salts, the respective C—N and C═S bond lengths are essentially the same. The C—N bond lengths involving the central N1 atom are significantly longer than the other C—N bond lengths linking the amine groups (Tables 1, 3 and 5). The C1═S1 bond lengths in these salts are comparable to those in thiourea derivatives (where the average C═S distance is 1.663 Å; Allen et al. 1997). However the gas-phase data for thioformaldehyde, CH2═S, give for the C═S bond distance a value of 1.6109 (8) Å, which represents 100% double-bond character (Johnson et al., 1971), while C═S bond lengths of ca 1.74 Å are cited as representing 50% double-bond character, as observed in dithiolate anions (Abrahams, 1956; Allen et al., 1987). The planarity of the amine groups indicates the sp2-hybridization of the orbitals on the amine N atoms, and the lone pair of electrons occupies the p orbital, which is perpendicular to the plane of the NH2 groups. The p orbitals of the C and S atoms, forming the π bonds of the C2═N1 and C1═S1 double bonds, are also perpendicular to the plane; therefore, partial delocalization, due to the symmetry of the p orbitals, of the π electrons over whole cation is possible, and leads to elongation of the C1═S1 and C2═N1 double bonds and to shortening of the other single C—N bonds (Table 1, 3 and 5). Thus, the bond order of C1═ S1 and C2═N1 is smaller than 2, and the bond order of the C—N bonds linking the amine groups is greater than 1. The bond order of the C—N bonds joining the amine groups is greater than the bond order of the C—N bonds involved the central N1 atom. The repulsion between the S atom and the amine group at N4 causes the rotation of both arms of the cation around the C—N1 bonds and is responsible for the twisted conformation of the cation. This interaction decreases the overlapping of the p orbitals of atoms C2 and N1 and of atoms N1 and C1, and leads to the elongation of the C2—N1 and N1—C1 bonds compared with the other C—Namine bonds, in which the overlapping of the p orbitals is more effective. The steric interaction between atom S1 and amine atom N4 is also responsible for the distortion of the N—C—N, C—N1—C and N—C1—S1 angles, as expected for sp2-hybridization. A similar correlation between the bond lengths and angles can be found in the gas-phase structure as obtained by ab-initio MO calculations (Fig. 1). The protonation of the central N1 atom leads to a decrease of the steric effect of the lone pair of electron on atom N1 and makes the C2—N1—C1 angle greater by \sim 6° in relation to that in the neutral diaminomethylenethiourea molecule (Janczak & Perpétuo, 2008b). This is consistent with the valence-shell electron-pair repulsion model (Gillespie, 1963, 1992), according to which the lone pair of electrons on the N atom occupies a wider region than the bonding pair N—H.
In the crystal structures, besides the interionic interactions, the oppositely charged units are linked by hydrogen bonds. In the crystal structure of (Ia), the 1-(diaminomethylene)thiouron-1-ium cations are arranged almost parallel to the (100) crystallographic plane, forming layers with a distance of a/2 (~3.26 Å) between the layers (Fig. 3a). Within the layers, as well as between the layers, the cations are interconnected by N—H···Cl hydrogen bonds (Table 2). In the crystal structures of both (Ib) and (Ic), C2H7N4S+ cations related by an inversion center interact via N—H···S hydrogen bonds, forming a dimeric structure (Figs. 2b and 2c). The S atom contains two lone pairs of electrons that can be involved in hydrogen bonds as acceptors. The non-bonded S···H contact requires that the distance between the S and H atoms should be less than the sum of the van der Waals radii of S and H atoms [rS = 1.80 Å (Bondi, 1964) and rH = 1.10 Å (Rowland & Taylor, 1996)]. S···H contacts shorter than 2.90 Å are observed in both (Ib) and (Ic) (Tables 4 and 6). The dimers of C2H7N4S+ cations in (Ib) are interconnected by N—H···Br hydrogen bonds, forming layers that lie almost parallel to the (102) plane and are separated by a distance of ~3.16 Å. No hydrogen bonds of the Br···H type with a distance shorter than the sum of the van der Waals radii of Br and H (rBr=1.81 and rH=1.10 Å; Rowland & Taylor, 1996; Pauling, 1960) were found between the layers; therefore, they interact only by the van der Waals forces. In the crystal structure of (Ic), the dimers interact via N—H···I hydrogen bonds, forming layers almost parallel to (302). Similarly to the crystal structure of (Ib), there are no I···H contacts with a distance shorter than the sum of the van der Waals radii of I and H (rI = 2.20 Å; Pauling, 1960).
This study underscores the utility of 1-(diaminomethylene)thiourea for developing supramolecular structures with acids. The larger anions, such as Br- and I- , interconnect the 1-(diaminomethylene)thiouron-1-ium dimers into layers. The large anionic radii cause the layers to be separated by a greater distance than the sum of van der Waals radii of I or Br and H atoms, and therefore there are no hydrogen-bonding interactions between the layers in (Ib) and (Ic). However, in the chloride salt, the smaller chloride anions link the 1-(diaminomethylene)thiouron-1-ium cations into layers that are interconnected via Cl···H interactions into a three-dimensional network.