Buy article online - an online subscription or single-article purchase is required to access this article.
The molecules of ethyl 2-methoxy-6-[(triphenylphosphoranylidene)amino]nicotinate, C27H25N2O3P, (I), and ethyl 2-methylsulfanyl-6-[(triphenylphosphoranylidene)amino]nicotinate, C27H25N2O2PS, (II), have almost identical bond lengths and molecular conformations, and both show evidence for polarized electronic structures. However, the crystal structures, as illustrated by the weak hydrogen bonds linking the molecules, are significantly different. The significance of this study lies in the observation that two compounds which are almost identical in constitution, configuration and conformation nonetheless adopt different crystal structures.
Supporting information
CCDC references: 686448; 686449
For the synthesis of compounds (I) and (II), mixtures of the precursors, (III)
or (IV), respectively (0.5 mmol), and ethyl propiolate (2.5 mmol) in dry
acetonitrile (0.9 ml) were subjected to microwave irradiation (100 W for 0.5 h) in sealed tubes under magnetic stirring. The resulting mixtures were
evaporated to dryness under reduced pressure, and the products were purified
by chromatography on silica using dichloromethane–acetone (98:2,
v/v) as eluent. After removal of the solvent, crystallization
from ethanol gave samples of (I) and (II) suitable for single-crystal X-ray
diffraction. Compound (I), yellow blocks, m. p. 483–484 K, yield 54%.
Compound (II), yellow blocks, m. p. 492 K, yield 18%.
Crystals of (I) and (II) are triclinic. For each, the space group P1
was selected, and confirmed by the structure analysis. All H atoms were
located in difference maps and then treated as riding atoms in geometrically
idealized positions with C—H = 0.95 (aromatic and heteroaromatic), 0.98
(CH3) or 0.99 Å (CH2), and with Uiso(H) = kUeq(C),
where k = 1.5 for the methyl groups and 1.2 for all other H atoms.
For both compounds, data collection: COLLECT (Nonius, 1999); cell refinement: DIRAX/LSQ (Duisenberg et al., 2000); data reduction: EVALCCD (Duisenberg et al., 2003); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: OSCAIL (McArdle, 2003) and SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PRPKAPPA (Ferguson, 1999).
(I) ethyl 2-methoxy-6-[(triphenylphosphoranylidene)amino]nicotinate
top
Crystal data top
C27H25N2O3P | Z = 2 |
Mr = 456.46 | F(000) = 480 |
Triclinic, P1 | Dx = 1.307 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.5336 (18) Å | Cell parameters from 5321 reflections |
b = 11.063 (3) Å | θ = 2.2–27.5° |
c = 13.426 (3) Å | µ = 0.15 mm−1 |
α = 73.722 (18)° | T = 120 K |
β = 72.389 (16)° | Block, yellow |
γ = 85.93 (2)° | 0.22 × 0.20 × 0.15 mm |
V = 1159.5 (5) Å3 | |
Data collection top
Bruker Nonius KappaCCD area-detector diffractometer | 5321 independent reflections |
Radiation source: Bruker Nonius FR591 rotating anode | 3750 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.080 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 2.2° |
ϕ and ω scans | h = −10→11 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −14→14 |
Tmin = 0.972, Tmax = 0.978 | l = −17→17 |
30925 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.055 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0304P)2 + 1.1007P] where P = (Fo2 + 2Fc2)/3 |
5321 reflections | (Δ/σ)max < 0.001 |
300 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.40 e Å−3 |
Crystal data top
C27H25N2O3P | γ = 85.93 (2)° |
Mr = 456.46 | V = 1159.5 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.5336 (18) Å | Mo Kα radiation |
b = 11.063 (3) Å | µ = 0.15 mm−1 |
c = 13.426 (3) Å | T = 120 K |
α = 73.722 (18)° | 0.22 × 0.20 × 0.15 mm |
β = 72.389 (16)° | |
Data collection top
Bruker Nonius KappaCCD area-detector diffractometer | 5321 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 3750 reflections with I > 2σ(I) |
Tmin = 0.972, Tmax = 0.978 | Rint = 0.080 |
30925 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.055 | 0 restraints |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.32 e Å−3 |
5321 reflections | Δρmin = −0.40 e Å−3 |
300 parameters | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
P6 | 0.42082 (7) | 0.76380 (5) | 0.41097 (5) | 0.01679 (14) | |
O21 | 0.7713 (2) | 0.73146 (15) | 0.04432 (13) | 0.0259 (4) | |
O31 | 0.8155 (2) | 0.56356 (16) | −0.07349 (14) | 0.0351 (4) | |
O32 | 0.6941 (2) | 0.37623 (14) | 0.01935 (12) | 0.0239 (4) | |
N1 | 0.5680 (2) | 0.69210 (17) | 0.20646 (15) | 0.0189 (4) | |
N6 | 0.3660 (2) | 0.64965 (17) | 0.37722 (15) | 0.0195 (4) | |
C2 | 0.6495 (3) | 0.6544 (2) | 0.12023 (17) | 0.0197 (5) | |
C3 | 0.6204 (3) | 0.5403 (2) | 0.10165 (18) | 0.0200 (5) | |
C4 | 0.4932 (3) | 0.4646 (2) | 0.18253 (18) | 0.0216 (5) | |
C5 | 0.4064 (3) | 0.5009 (2) | 0.27276 (18) | 0.0217 (5) | |
C6 | 0.4478 (3) | 0.6161 (2) | 0.28530 (18) | 0.0194 (5) | |
C21 | 0.8079 (3) | 0.8419 (2) | 0.0698 (2) | 0.0340 (6) | |
C31 | 0.7198 (3) | 0.4995 (2) | 0.00711 (18) | 0.0219 (5) | |
C32 | 0.7958 (3) | 0.3266 (2) | −0.06761 (19) | 0.0277 (5) | |
C33 | 0.7453 (3) | 0.1914 (2) | −0.0417 (2) | 0.0360 (6) | |
C61 | 0.3189 (3) | 0.7353 (2) | 0.55353 (17) | 0.0184 (4) | |
C62 | 0.3765 (3) | 0.7890 (2) | 0.61844 (19) | 0.0236 (5) | |
C63 | 0.2907 (3) | 0.7701 (2) | 0.72700 (19) | 0.0253 (5) | |
C64 | 0.1479 (3) | 0.6973 (2) | 0.77224 (19) | 0.0260 (5) | |
C65 | 0.0922 (3) | 0.6420 (2) | 0.70846 (19) | 0.0253 (5) | |
C66 | 0.1762 (3) | 0.6613 (2) | 0.59944 (19) | 0.0231 (5) | |
C71 | 0.3557 (3) | 0.9185 (2) | 0.34794 (18) | 0.0188 (4) | |
C72 | 0.2649 (3) | 0.9969 (2) | 0.4092 (2) | 0.0260 (5) | |
C73 | 0.2129 (3) | 1.1131 (2) | 0.3582 (2) | 0.0314 (6) | |
C74 | 0.2494 (3) | 1.1524 (2) | 0.2464 (2) | 0.0303 (6) | |
C75 | 0.3381 (3) | 1.0743 (2) | 0.1858 (2) | 0.0335 (6) | |
C76 | 0.3909 (3) | 0.9588 (2) | 0.2350 (2) | 0.0285 (5) | |
C81 | 0.6387 (3) | 0.7744 (2) | 0.39215 (17) | 0.0187 (5) | |
C82 | 0.7251 (3) | 0.8878 (2) | 0.34761 (19) | 0.0233 (5) | |
C83 | 0.8943 (3) | 0.8902 (2) | 0.3303 (2) | 0.0279 (5) | |
C84 | 0.9758 (3) | 0.7795 (2) | 0.3571 (2) | 0.0316 (6) | |
C85 | 0.8895 (3) | 0.6666 (2) | 0.4026 (2) | 0.0330 (6) | |
C86 | 0.7211 (3) | 0.6633 (2) | 0.4206 (2) | 0.0265 (5) | |
H4 | 0.4669 | 0.3866 | 0.1744 | 0.026* | |
H5 | 0.3193 | 0.4493 | 0.3264 | 0.026* | |
H21A | 0.8340 | 0.8172 | 0.1389 | 0.051* | |
H21B | 0.7123 | 0.8970 | 0.0757 | 0.051* | |
H21C | 0.9023 | 0.8869 | 0.0121 | 0.051* | |
H32A | 0.9133 | 0.3326 | −0.0728 | 0.033* | |
H32B | 0.7795 | 0.3749 | −0.1378 | 0.033* | |
H33A | 0.6290 | 0.1868 | −0.0371 | 0.054* | |
H33B | 0.7618 | 0.1447 | 0.0280 | 0.054* | |
H33C | 0.8121 | 0.1546 | −0.0990 | 0.054* | |
H62 | 0.4747 | 0.8386 | 0.5880 | 0.028* | |
H63 | 0.3299 | 0.8073 | 0.7709 | 0.030* | |
H64 | 0.0886 | 0.6854 | 0.8467 | 0.031* | |
H65 | −0.0043 | 0.5905 | 0.7397 | 0.030* | |
H66 | 0.1365 | 0.6240 | 0.5559 | 0.028* | |
H72 | 0.2385 | 0.9707 | 0.4862 | 0.031* | |
H73 | 0.1516 | 1.1660 | 0.4005 | 0.038* | |
H74 | 0.2140 | 1.2320 | 0.2117 | 0.036* | |
H75 | 0.3630 | 1.1007 | 0.1089 | 0.040* | |
H76 | 0.4517 | 0.9064 | 0.1920 | 0.034* | |
H82 | 0.6688 | 0.9641 | 0.3288 | 0.028* | |
H83 | 0.9534 | 0.9680 | 0.3002 | 0.034* | |
H84 | 1.0915 | 0.7808 | 0.3443 | 0.038* | |
H85 | 0.9460 | 0.5905 | 0.4216 | 0.040* | |
H86 | 0.6622 | 0.5854 | 0.4523 | 0.032* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
P6 | 0.0148 (3) | 0.0156 (3) | 0.0199 (3) | −0.0025 (2) | −0.0041 (2) | −0.0051 (2) |
O21 | 0.0269 (9) | 0.0213 (8) | 0.0252 (9) | −0.0071 (7) | −0.0003 (7) | −0.0055 (7) |
O31 | 0.0433 (11) | 0.0269 (10) | 0.0257 (9) | −0.0085 (8) | 0.0061 (8) | −0.0077 (8) |
O32 | 0.0281 (9) | 0.0210 (8) | 0.0222 (8) | −0.0008 (7) | −0.0045 (7) | −0.0081 (7) |
N1 | 0.0171 (9) | 0.0184 (9) | 0.0214 (10) | −0.0015 (7) | −0.0054 (8) | −0.0057 (8) |
N6 | 0.0179 (9) | 0.0185 (9) | 0.0231 (10) | −0.0044 (7) | −0.0044 (8) | −0.0081 (8) |
C2 | 0.0187 (11) | 0.0187 (11) | 0.0188 (11) | −0.0023 (9) | −0.0050 (9) | −0.0003 (9) |
C3 | 0.0200 (11) | 0.0182 (11) | 0.0215 (11) | 0.0022 (9) | −0.0066 (9) | −0.0052 (9) |
C4 | 0.0239 (12) | 0.0159 (11) | 0.0259 (12) | −0.0017 (9) | −0.0088 (9) | −0.0054 (9) |
C5 | 0.0197 (11) | 0.0202 (11) | 0.0233 (12) | −0.0042 (9) | −0.0022 (9) | −0.0068 (9) |
C6 | 0.0166 (11) | 0.0194 (11) | 0.0227 (11) | 0.0004 (8) | −0.0071 (9) | −0.0047 (9) |
C21 | 0.0301 (14) | 0.0268 (13) | 0.0386 (15) | −0.0139 (11) | 0.0042 (11) | −0.0108 (12) |
C31 | 0.0243 (12) | 0.0197 (11) | 0.0212 (12) | 0.0011 (9) | −0.0065 (10) | −0.0052 (10) |
C32 | 0.0335 (14) | 0.0264 (13) | 0.0223 (12) | 0.0038 (10) | −0.0049 (10) | −0.0093 (10) |
C33 | 0.0400 (15) | 0.0289 (14) | 0.0416 (16) | −0.0011 (11) | −0.0062 (12) | −0.0196 (12) |
C61 | 0.0191 (11) | 0.0161 (11) | 0.0195 (11) | 0.0007 (8) | −0.0057 (9) | −0.0042 (9) |
C62 | 0.0254 (12) | 0.0203 (12) | 0.0253 (12) | −0.0037 (9) | −0.0077 (10) | −0.0055 (10) |
C63 | 0.0320 (13) | 0.0229 (12) | 0.0241 (12) | 0.0023 (10) | −0.0126 (10) | −0.0070 (10) |
C64 | 0.0268 (13) | 0.0288 (13) | 0.0190 (12) | 0.0053 (10) | −0.0036 (10) | −0.0055 (10) |
C65 | 0.0205 (12) | 0.0277 (13) | 0.0239 (12) | −0.0030 (9) | −0.0003 (9) | −0.0072 (10) |
C66 | 0.0192 (11) | 0.0237 (12) | 0.0272 (12) | −0.0031 (9) | −0.0064 (9) | −0.0079 (10) |
C71 | 0.0138 (10) | 0.0155 (10) | 0.0268 (12) | −0.0028 (8) | −0.0060 (9) | −0.0044 (9) |
C72 | 0.0270 (13) | 0.0242 (12) | 0.0299 (13) | 0.0015 (10) | −0.0120 (10) | −0.0085 (10) |
C73 | 0.0331 (14) | 0.0231 (13) | 0.0433 (16) | 0.0061 (10) | −0.0151 (12) | −0.0144 (12) |
C74 | 0.0223 (12) | 0.0227 (13) | 0.0433 (16) | −0.0007 (10) | −0.0136 (11) | −0.0001 (11) |
C75 | 0.0297 (14) | 0.0334 (14) | 0.0292 (14) | 0.0016 (11) | −0.0061 (11) | 0.0014 (11) |
C76 | 0.0248 (13) | 0.0287 (13) | 0.0262 (13) | 0.0041 (10) | −0.0036 (10) | −0.0037 (10) |
C81 | 0.0154 (10) | 0.0228 (11) | 0.0193 (11) | −0.0037 (8) | −0.0052 (8) | −0.0068 (9) |
C82 | 0.0227 (12) | 0.0211 (12) | 0.0263 (12) | −0.0047 (9) | −0.0065 (10) | −0.0064 (10) |
C83 | 0.0213 (12) | 0.0292 (13) | 0.0332 (14) | −0.0114 (10) | −0.0056 (10) | −0.0081 (11) |
C84 | 0.0180 (12) | 0.0384 (15) | 0.0423 (15) | −0.0048 (10) | −0.0095 (11) | −0.0154 (12) |
C85 | 0.0238 (13) | 0.0315 (14) | 0.0483 (16) | 0.0035 (10) | −0.0181 (12) | −0.0107 (12) |
C86 | 0.0227 (12) | 0.0211 (12) | 0.0357 (14) | −0.0025 (9) | −0.0102 (10) | −0.0055 (10) |
Geometric parameters (Å, º) top
P6—N6 | 1.5975 (18) | C62—H62 | 0.95 |
P6—C61 | 1.792 (2) | C63—C64 | 1.386 (3) |
P6—C81 | 1.807 (2) | C63—H63 | 0.95 |
P6—C71 | 1.814 (2) | C64—C65 | 1.384 (3) |
O21—C2 | 1.358 (3) | C64—H64 | 0.95 |
O21—C21 | 1.435 (3) | C65—C66 | 1.383 (3) |
O31—C31 | 1.207 (3) | C65—H65 | 0.95 |
O32—C31 | 1.352 (3) | C66—H66 | 0.95 |
O32—C32 | 1.448 (3) | C71—C72 | 1.396 (3) |
N1—C2 | 1.319 (3) | C71—C76 | 1.397 (3) |
N1—C6 | 1.359 (3) | C72—C73 | 1.388 (3) |
N6—C6 | 1.359 (3) | C72—H72 | 0.95 |
C2—C3 | 1.406 (3) | C73—C74 | 1.381 (4) |
C3—C4 | 1.401 (3) | C73—H73 | 0.95 |
C3—C31 | 1.466 (3) | C74—C75 | 1.382 (4) |
C4—C5 | 1.365 (3) | C74—H74 | 0.95 |
C4—H4 | 0.95 | C75—C76 | 1.377 (3) |
C5—C6 | 1.413 (3) | C75—H75 | 0.95 |
C5—H5 | 0.95 | C76—H76 | 0.95 |
C21—H21A | 0.98 | C81—C82 | 1.385 (3) |
C21—H21B | 0.98 | C81—C86 | 1.389 (3) |
C21—H21C | 0.98 | C82—C83 | 1.392 (3) |
C32—C33 | 1.500 (3) | C82—H82 | 0.95 |
C32—H32A | 0.99 | C83—C84 | 1.377 (4) |
C32—H32B | 0.99 | C83—H83 | 0.95 |
C33—H33A | 0.98 | C84—C85 | 1.381 (4) |
C33—H33B | 0.98 | C84—H84 | 0.95 |
C33—H33C | 0.98 | C85—C86 | 1.384 (3) |
C61—C66 | 1.392 (3) | C85—H85 | 0.95 |
C61—C62 | 1.394 (3) | C86—H86 | 0.95 |
C62—C63 | 1.382 (3) | | |
| | | |
N6—P6—C61 | 105.47 (10) | C63—C62—H62 | 120.0 |
N6—P6—C81 | 114.99 (10) | C61—C62—H62 | 120.0 |
C61—P6—C81 | 107.20 (10) | C62—C63—C64 | 120.4 (2) |
N6—P6—C71 | 115.46 (10) | C62—C63—H63 | 119.8 |
C61—P6—C71 | 105.61 (10) | C64—C63—H63 | 119.8 |
C81—P6—C71 | 107.39 (10) | C63—C64—C65 | 119.7 (2) |
C2—O21—C21 | 116.54 (18) | C63—C64—H64 | 120.2 |
C31—O32—C32 | 115.16 (18) | C65—C64—H64 | 120.2 |
C2—N1—C6 | 118.93 (19) | C66—C65—C64 | 120.4 (2) |
C6—N6—P6 | 124.02 (15) | C66—C65—H65 | 119.8 |
N1—C2—O21 | 117.30 (19) | C64—C65—H65 | 119.8 |
N1—C2—C3 | 124.9 (2) | C65—C66—C61 | 120.0 (2) |
O21—C2—C3 | 117.8 (2) | C65—C66—H66 | 120.0 |
C4—C3—C2 | 115.3 (2) | C61—C66—H66 | 120.0 |
C4—C3—C31 | 121.7 (2) | C72—C71—C76 | 118.6 (2) |
C2—C3—C31 | 122.9 (2) | C72—C71—P6 | 121.92 (18) |
C5—C4—C3 | 121.3 (2) | C76—C71—P6 | 119.38 (17) |
C5—C4—H4 | 119.4 | C73—C72—C71 | 120.2 (2) |
C3—C4—H4 | 119.4 | C73—C72—H72 | 119.9 |
C4—C5—C6 | 119.2 (2) | C71—C72—H72 | 119.9 |
C4—C5—H5 | 120.4 | C74—C73—C72 | 120.6 (2) |
C6—C5—H5 | 120.4 | C74—C73—H73 | 119.7 |
N6—C6—N1 | 120.49 (19) | C72—C73—H73 | 119.7 |
N6—C6—C5 | 119.1 (2) | C73—C74—C75 | 119.1 (2) |
N1—C6—C5 | 120.4 (2) | C73—C74—H74 | 120.4 |
O21—C21—H21A | 109.5 | C75—C74—H74 | 120.4 |
O21—C21—H21B | 109.5 | C76—C75—C74 | 121.1 (2) |
H21A—C21—H21B | 109.5 | C76—C75—H75 | 119.5 |
O21—C21—H21C | 109.5 | C74—C75—H75 | 119.5 |
H21A—C21—H21C | 109.5 | C75—C76—C71 | 120.3 (2) |
H21B—C21—H21C | 109.5 | C75—C76—H76 | 119.9 |
O31—C31—O32 | 121.6 (2) | C71—C76—H76 | 119.9 |
O31—C31—C3 | 126.6 (2) | C82—C81—C86 | 119.8 (2) |
O32—C31—C3 | 111.79 (19) | C82—C81—P6 | 122.38 (18) |
O32—C32—C33 | 107.3 (2) | C86—C81—P6 | 117.81 (17) |
O32—C32—H32A | 110.3 | C81—C82—C83 | 120.1 (2) |
C33—C32—H32A | 110.3 | C81—C82—H82 | 119.9 |
O32—C32—H32B | 110.3 | C83—C82—H82 | 119.9 |
C33—C32—H32B | 110.3 | C84—C83—C82 | 119.9 (2) |
H32A—C32—H32B | 108.5 | C84—C83—H83 | 120.1 |
C32—C33—H33A | 109.5 | C82—C83—H83 | 120.1 |
C32—C33—H33B | 109.5 | C83—C84—C85 | 120.0 (2) |
H33A—C33—H33B | 109.5 | C83—C84—H84 | 120.0 |
C32—C33—H33C | 109.5 | C85—C84—H84 | 120.0 |
H33A—C33—H33C | 109.5 | C84—C85—C86 | 120.5 (2) |
H33B—C33—H33C | 109.5 | C84—C85—H85 | 119.7 |
C66—C61—C62 | 119.4 (2) | C86—C85—H85 | 119.7 |
C66—C61—P6 | 119.08 (17) | C85—C86—C81 | 119.7 (2) |
C62—C61—P6 | 121.44 (17) | C85—C86—H86 | 120.2 |
C63—C62—C61 | 120.0 (2) | C81—C86—H86 | 120.2 |
| | | |
C61—P6—N6—C6 | −161.23 (18) | C61—C62—C63—C64 | 0.4 (3) |
C81—P6—N6—C6 | −43.4 (2) | C62—C63—C64—C65 | 0.8 (4) |
C71—P6—N6—C6 | 82.6 (2) | C63—C64—C65—C66 | −1.4 (4) |
C6—N1—C2—O21 | −178.51 (19) | C64—C65—C66—C61 | 0.8 (4) |
C6—N1—C2—C3 | 1.0 (3) | C62—C61—C66—C65 | 0.4 (3) |
C21—O21—C2—N1 | 4.8 (3) | P6—C61—C66—C65 | −177.57 (18) |
C21—O21—C2—C3 | −174.7 (2) | N6—P6—C71—C72 | 124.57 (19) |
N1—C2—C3—C4 | 0.6 (3) | C61—P6—C71—C72 | 8.5 (2) |
O21—C2—C3—C4 | −179.9 (2) | C81—P6—C71—C72 | −105.68 (19) |
N1—C2—C3—C31 | −176.8 (2) | N6—P6—C71—C76 | −52.7 (2) |
O21—C2—C3—C31 | 2.7 (3) | C61—P6—C71—C76 | −168.77 (18) |
C2—C3—C4—C5 | −0.5 (3) | C81—P6—C71—C76 | 77.1 (2) |
C31—C3—C4—C5 | 176.9 (2) | C76—C71—C72—C73 | −0.7 (3) |
C3—C4—C5—C6 | −1.0 (3) | P6—C71—C72—C73 | −178.01 (18) |
P6—N6—C6—N1 | −11.1 (3) | C71—C72—C73—C74 | 0.3 (4) |
P6—N6—C6—C5 | 168.82 (17) | C72—C73—C74—C75 | 0.2 (4) |
C2—N1—C6—N6 | 177.3 (2) | C73—C74—C75—C76 | −0.3 (4) |
C2—N1—C6—C5 | −2.6 (3) | C74—C75—C76—C71 | −0.1 (4) |
C4—C5—C6—N6 | −177.3 (2) | C72—C71—C76—C75 | 0.6 (4) |
C4—C5—C6—N1 | 2.6 (3) | P6—C71—C76—C75 | 177.96 (19) |
C32—O32—C31—O31 | 3.4 (3) | N6—P6—C81—C82 | 136.53 (19) |
C32—O32—C31—C3 | −176.17 (19) | C61—P6—C81—C82 | −106.6 (2) |
C4—C3—C31—O31 | 169.0 (2) | C71—P6—C81—C82 | 6.5 (2) |
C2—C3—C31—O31 | −13.8 (4) | N6—P6—C81—C86 | −41.3 (2) |
C4—C3—C31—O32 | −11.5 (3) | C61—P6—C81—C86 | 75.6 (2) |
C2—C3—C31—O32 | 165.7 (2) | C71—P6—C81—C86 | −171.33 (18) |
C31—O32—C32—C33 | −177.9 (2) | C86—C81—C82—C83 | 0.7 (3) |
N6—P6—C61—C66 | −23.7 (2) | P6—C81—C82—C83 | −177.12 (18) |
C81—P6—C61—C66 | −146.68 (18) | C81—C82—C83—C84 | 0.3 (4) |
C71—P6—C61—C66 | 99.03 (19) | C82—C83—C84—C85 | −1.0 (4) |
N6—P6—C61—C62 | 158.42 (18) | C83—C84—C85—C86 | 0.7 (4) |
C81—P6—C61—C62 | 35.4 (2) | C84—C85—C86—C81 | 0.3 (4) |
C71—P6—C61—C62 | −78.9 (2) | C82—C81—C86—C85 | −1.0 (4) |
C66—C61—C62—C63 | −1.0 (3) | P6—C81—C86—C85 | 176.87 (19) |
P6—C61—C62—C63 | 176.91 (18) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C76—H76···N1 | 0.95 | 2.48 | 3.284 (3) | 142 |
C64—H64···O31i | 0.95 | 2.55 | 3.138 (3) | 120 |
C65—H65···O31i | 0.95 | 2.46 | 3.096 (3) | 124 |
C74—H74···O31ii | 0.95 | 2.54 | 3.466 (3) | 164 |
Symmetry codes: (i) x−1, y, z+1; (ii) −x+1, −y+2, −z. |
(II) Ethyl 2-methylsulfanyl-6-[(triphenylphosphoranylidene)amino]nicotinate
top
Crystal data top
C27H25N2O2PS | Z = 2 |
Mr = 472.52 | F(000) = 496 |
Triclinic, P1 | Dx = 1.323 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.5671 (14) Å | Cell parameters from 5400 reflections |
b = 11.0617 (6) Å | θ = 3.2–27.5° |
c = 13.547 (2) Å | µ = 0.23 mm−1 |
α = 102.987 (8)° | T = 120 K |
β = 106.417 (12)° | Block, yellow |
γ = 94.596 (10)° | 0.46 × 0.31 × 0.29 mm |
V = 1185.7 (3) Å3 | |
Data collection top
Bruker Nonius KappaCCD area-detector diffractometer | 5400 independent reflections |
Radiation source: Bruker Nonius FR591 rotating anode | 4362 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.2° |
ϕ and ω scans | h = −11→11 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −14→13 |
Tmin = 0.901, Tmax = 0.936 | l = −17→17 |
24840 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0409P)2 + 0.7635P] where P = (Fo2 + 2Fc2)/3 |
5400 reflections | (Δ/σ)max = 0.001 |
300 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.36 e Å−3 |
Crystal data top
C27H25N2O2PS | γ = 94.596 (10)° |
Mr = 472.52 | V = 1185.7 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.5671 (14) Å | Mo Kα radiation |
b = 11.0617 (6) Å | µ = 0.23 mm−1 |
c = 13.547 (2) Å | T = 120 K |
α = 102.987 (8)° | 0.46 × 0.31 × 0.29 mm |
β = 106.417 (12)° | |
Data collection top
Bruker Nonius KappaCCD area-detector diffractometer | 5400 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 4362 reflections with I > 2σ(I) |
Tmin = 0.901, Tmax = 0.936 | Rint = 0.033 |
24840 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.29 e Å−3 |
5400 reflections | Δρmin = −0.36 e Å−3 |
300 parameters | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S21 | 0.66708 (5) | 0.74151 (4) | 0.96911 (3) | 0.02315 (11) | |
P6 | 0.66502 (5) | 0.75652 (4) | 0.58072 (3) | 0.01650 (10) | |
O31 | 0.77752 (16) | 0.55697 (12) | 1.06406 (9) | 0.0302 (3) | |
O32 | 0.80751 (15) | 0.36788 (11) | 0.97403 (9) | 0.0242 (3) | |
N1 | 0.71708 (16) | 0.67783 (12) | 0.78131 (10) | 0.0178 (3) | |
N6 | 0.74784 (16) | 0.63978 (12) | 0.60969 (10) | 0.0187 (3) | |
C2 | 0.72802 (19) | 0.64059 (14) | 0.86988 (12) | 0.0185 (3) | |
C3 | 0.78322 (19) | 0.52838 (15) | 0.88577 (12) | 0.0193 (3) | |
C4 | 0.8278 (2) | 0.45357 (15) | 0.80280 (12) | 0.0206 (3) | |
C5 | 0.8181 (2) | 0.49073 (15) | 0.71169 (12) | 0.0205 (3) | |
C6 | 0.76002 (19) | 0.60440 (14) | 0.70141 (12) | 0.0177 (3) | |
C21 | 0.5695 (3) | 0.84629 (17) | 0.89579 (15) | 0.0316 (4) | |
C31 | 0.7891 (2) | 0.48939 (16) | 0.98338 (12) | 0.0214 (3) | |
C32 | 0.8040 (2) | 0.32149 (17) | 1.06586 (13) | 0.0263 (4) | |
C33 | 0.8286 (3) | 0.18668 (18) | 1.04022 (16) | 0.0361 (4) | |
C61 | 0.6295 (2) | 0.73180 (14) | 0.44001 (12) | 0.0192 (3) | |
C62 | 0.5093 (2) | 0.78628 (15) | 0.37914 (13) | 0.0234 (3) | |
C63 | 0.4863 (2) | 0.76680 (17) | 0.27077 (13) | 0.0270 (4) | |
C64 | 0.5804 (2) | 0.69269 (17) | 0.22276 (13) | 0.0284 (4) | |
C65 | 0.6988 (2) | 0.63766 (17) | 0.28251 (14) | 0.0289 (4) | |
C66 | 0.7246 (2) | 0.65804 (16) | 0.39133 (13) | 0.0235 (3) | |
C71 | 0.79198 (19) | 0.90912 (15) | 0.64353 (13) | 0.0196 (3) | |
C72 | 0.8179 (2) | 0.99309 (16) | 0.58480 (14) | 0.0264 (4) | |
C73 | 0.9195 (2) | 1.10820 (17) | 0.63560 (16) | 0.0309 (4) | |
C74 | 0.9966 (2) | 1.13934 (16) | 0.74425 (15) | 0.0288 (4) | |
C75 | 0.9735 (2) | 1.05526 (17) | 0.80279 (14) | 0.0289 (4) | |
C76 | 0.8719 (2) | 0.94080 (16) | 0.75309 (13) | 0.0249 (4) | |
C81 | 0.46807 (19) | 0.76946 (15) | 0.60262 (12) | 0.0190 (3) | |
C82 | 0.4237 (2) | 0.88451 (16) | 0.64168 (13) | 0.0233 (3) | |
C83 | 0.2713 (2) | 0.88936 (17) | 0.65897 (14) | 0.0291 (4) | |
C84 | 0.1643 (2) | 0.77977 (19) | 0.63712 (15) | 0.0316 (4) | |
C85 | 0.2075 (2) | 0.66544 (18) | 0.59706 (16) | 0.0322 (4) | |
C86 | 0.3588 (2) | 0.65907 (16) | 0.57938 (14) | 0.0248 (4) | |
H4 | 0.8650 | 0.3764 | 0.8099 | 0.025* | |
H5 | 0.8500 | 0.4406 | 0.6561 | 0.025* | |
H21A | 0.6518 | 0.8951 | 0.8767 | 0.047* | |
H21B | 0.5192 | 0.9034 | 0.9399 | 0.047* | |
H21C | 0.4841 | 0.7975 | 0.8308 | 0.047* | |
H32A | 0.6970 | 0.3284 | 1.0793 | 0.032* | |
H32B | 0.8928 | 0.3708 | 1.1301 | 0.032* | |
H33A | 0.7428 | 0.1398 | 0.9747 | 0.054* | |
H33B | 0.8221 | 0.1506 | 1.0990 | 0.054* | |
H33C | 0.9371 | 0.1815 | 1.0303 | 0.054* | |
H62 | 0.4435 | 0.8365 | 0.4117 | 0.028* | |
H63 | 0.4053 | 0.8046 | 0.2294 | 0.032* | |
H64 | 0.5638 | 0.6795 | 0.1485 | 0.034* | |
H65 | 0.7625 | 0.5859 | 0.2492 | 0.035* | |
H66 | 0.8074 | 0.6215 | 0.4326 | 0.028* | |
H72 | 0.7661 | 0.9718 | 0.5099 | 0.032* | |
H73 | 0.9358 | 1.1655 | 0.5953 | 0.037* | |
H74 | 1.0651 | 1.2181 | 0.7788 | 0.035* | |
H75 | 1.0277 | 1.0762 | 0.8774 | 0.035* | |
H76 | 0.8566 | 0.8838 | 0.7938 | 0.030* | |
H82 | 0.4974 | 0.9599 | 0.6566 | 0.028* | |
H83 | 0.2411 | 0.9680 | 0.6858 | 0.035* | |
H84 | 0.0608 | 0.7829 | 0.6496 | 0.038* | |
H85 | 0.1328 | 0.5904 | 0.5815 | 0.039* | |
H86 | 0.3877 | 0.5802 | 0.5517 | 0.030* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S21 | 0.0275 (2) | 0.0245 (2) | 0.0178 (2) | 0.00471 (16) | 0.00973 (16) | 0.00253 (15) |
P6 | 0.0181 (2) | 0.0167 (2) | 0.01467 (19) | 0.00265 (14) | 0.00539 (15) | 0.00361 (14) |
O31 | 0.0410 (8) | 0.0341 (7) | 0.0201 (6) | 0.0118 (6) | 0.0126 (5) | 0.0100 (5) |
O32 | 0.0304 (7) | 0.0246 (6) | 0.0183 (6) | 0.0028 (5) | 0.0057 (5) | 0.0096 (5) |
N1 | 0.0187 (7) | 0.0186 (6) | 0.0158 (6) | 0.0016 (5) | 0.0059 (5) | 0.0036 (5) |
N6 | 0.0211 (7) | 0.0193 (6) | 0.0178 (6) | 0.0052 (5) | 0.0077 (5) | 0.0062 (5) |
C2 | 0.0168 (7) | 0.0191 (7) | 0.0167 (7) | −0.0014 (6) | 0.0043 (6) | 0.0013 (6) |
C3 | 0.0188 (8) | 0.0218 (8) | 0.0159 (7) | 0.0001 (6) | 0.0041 (6) | 0.0045 (6) |
C4 | 0.0223 (8) | 0.0190 (8) | 0.0193 (8) | 0.0032 (6) | 0.0037 (6) | 0.0059 (6) |
C5 | 0.0243 (8) | 0.0202 (8) | 0.0177 (7) | 0.0054 (6) | 0.0079 (6) | 0.0036 (6) |
C6 | 0.0172 (7) | 0.0182 (7) | 0.0162 (7) | 0.0000 (6) | 0.0043 (6) | 0.0035 (6) |
C21 | 0.0428 (11) | 0.0276 (9) | 0.0331 (10) | 0.0138 (8) | 0.0218 (9) | 0.0093 (8) |
C31 | 0.0181 (8) | 0.0262 (8) | 0.0190 (8) | 0.0022 (6) | 0.0035 (6) | 0.0073 (6) |
C32 | 0.0280 (9) | 0.0312 (9) | 0.0215 (8) | 0.0010 (7) | 0.0065 (7) | 0.0133 (7) |
C33 | 0.0464 (12) | 0.0337 (10) | 0.0332 (10) | 0.0064 (9) | 0.0128 (9) | 0.0179 (8) |
C61 | 0.0212 (8) | 0.0183 (7) | 0.0163 (7) | −0.0009 (6) | 0.0047 (6) | 0.0038 (6) |
C62 | 0.0250 (8) | 0.0227 (8) | 0.0208 (8) | 0.0025 (6) | 0.0048 (7) | 0.0057 (6) |
C63 | 0.0278 (9) | 0.0294 (9) | 0.0206 (8) | −0.0013 (7) | 0.0009 (7) | 0.0104 (7) |
C64 | 0.0332 (10) | 0.0317 (9) | 0.0174 (8) | −0.0059 (7) | 0.0071 (7) | 0.0053 (7) |
C65 | 0.0355 (10) | 0.0304 (9) | 0.0233 (9) | 0.0035 (8) | 0.0143 (8) | 0.0056 (7) |
C66 | 0.0275 (9) | 0.0239 (8) | 0.0217 (8) | 0.0054 (7) | 0.0097 (7) | 0.0080 (6) |
C71 | 0.0171 (7) | 0.0187 (7) | 0.0225 (8) | 0.0039 (6) | 0.0068 (6) | 0.0034 (6) |
C72 | 0.0260 (9) | 0.0245 (9) | 0.0271 (9) | 0.0022 (7) | 0.0033 (7) | 0.0101 (7) |
C73 | 0.0301 (10) | 0.0215 (9) | 0.0401 (10) | 0.0002 (7) | 0.0070 (8) | 0.0123 (8) |
C74 | 0.0231 (9) | 0.0205 (8) | 0.0380 (10) | −0.0005 (7) | 0.0095 (8) | −0.0005 (7) |
C75 | 0.0277 (9) | 0.0281 (9) | 0.0249 (9) | −0.0028 (7) | 0.0083 (7) | −0.0026 (7) |
C76 | 0.0268 (9) | 0.0253 (9) | 0.0204 (8) | −0.0017 (7) | 0.0080 (7) | 0.0026 (7) |
C81 | 0.0195 (8) | 0.0218 (8) | 0.0167 (7) | 0.0046 (6) | 0.0056 (6) | 0.0063 (6) |
C82 | 0.0263 (9) | 0.0211 (8) | 0.0237 (8) | 0.0056 (6) | 0.0087 (7) | 0.0063 (6) |
C83 | 0.0287 (9) | 0.0311 (9) | 0.0321 (9) | 0.0151 (7) | 0.0119 (8) | 0.0104 (7) |
C84 | 0.0213 (9) | 0.0433 (11) | 0.0345 (10) | 0.0104 (8) | 0.0113 (8) | 0.0133 (8) |
C85 | 0.0224 (9) | 0.0328 (10) | 0.0398 (11) | −0.0007 (7) | 0.0095 (8) | 0.0080 (8) |
C86 | 0.0225 (8) | 0.0221 (8) | 0.0285 (9) | 0.0024 (6) | 0.0082 (7) | 0.0038 (7) |
Geometric parameters (Å, º) top
S21—C2 | 1.7724 (16) | C62—H62 | 0.95 |
S21—C21 | 1.7980 (19) | C63—C64 | 1.382 (3) |
P6—N6 | 1.5944 (13) | C63—H63 | 0.95 |
P6—C61 | 1.7959 (16) | C64—C65 | 1.382 (3) |
P6—C81 | 1.8050 (16) | C64—H64 | 0.95 |
P6—C71 | 1.8148 (17) | C65—C66 | 1.390 (2) |
O31—C31 | 1.212 (2) | C65—H65 | 0.95 |
O32—C31 | 1.348 (2) | C66—H66 | 0.95 |
O32—C32 | 1.4551 (19) | C71—C72 | 1.394 (2) |
N1—C2 | 1.335 (2) | C71—C76 | 1.396 (2) |
N1—C6 | 1.3581 (19) | C72—C73 | 1.394 (2) |
N6—C6 | 1.3637 (19) | C72—H72 | 0.95 |
C2—C3 | 1.403 (2) | C73—C74 | 1.381 (3) |
C3—C4 | 1.403 (2) | C73—H73 | 0.95 |
C3—C31 | 1.470 (2) | C74—C75 | 1.387 (3) |
C4—C5 | 1.369 (2) | C74—H74 | 0.95 |
C4—H4 | 0.95 | C75—C76 | 1.387 (2) |
C5—C6 | 1.410 (2) | C75—H75 | 0.95 |
C5—H5 | 0.95 | C76—H76 | 0.95 |
C21—H21A | 0.98 | C81—C82 | 1.390 (2) |
C21—H21B | 0.98 | C81—C86 | 1.394 (2) |
C21—H21C | 0.98 | C82—C83 | 1.394 (2) |
C32—C33 | 1.499 (3) | C82—H82 | 0.95 |
C32—H32A | 0.99 | C83—C84 | 1.380 (3) |
C32—H32B | 0.99 | C83—H83 | 0.95 |
C33—H33A | 0.98 | C84—C85 | 1.382 (3) |
C33—H33B | 0.98 | C84—H84 | 0.95 |
C33—H33C | 0.98 | C85—C86 | 1.388 (2) |
C61—C66 | 1.390 (2) | C85—H85 | 0.95 |
C61—C62 | 1.395 (2) | C86—H86 | 0.95 |
C62—C63 | 1.389 (2) | | |
| | | |
C2—S21—C21 | 100.65 (8) | C63—C62—H62 | 120.1 |
N6—P6—C61 | 104.98 (7) | C61—C62—H62 | 120.1 |
N6—P6—C81 | 115.68 (7) | C64—C63—C62 | 120.36 (16) |
C61—P6—C81 | 106.65 (7) | C64—C63—H63 | 119.8 |
N6—P6—C71 | 115.61 (7) | C62—C63—H63 | 119.8 |
C61—P6—C71 | 106.30 (7) | C63—C64—C65 | 120.13 (16) |
C81—P6—C71 | 106.87 (7) | C63—C64—H64 | 119.9 |
C31—O32—C32 | 115.20 (13) | C65—C64—H64 | 119.9 |
C2—N1—C6 | 119.34 (13) | C64—C65—C66 | 119.99 (17) |
C6—N6—P6 | 124.59 (11) | C64—C65—H65 | 120.0 |
N1—C2—C3 | 123.27 (14) | C66—C65—H65 | 120.0 |
N1—C2—S21 | 116.16 (12) | C65—C66—C61 | 120.16 (16) |
C3—C2—S21 | 120.57 (12) | C65—C66—H66 | 119.9 |
C2—C3—C4 | 116.84 (14) | C61—C66—H66 | 119.9 |
C2—C3—C31 | 121.43 (14) | C72—C71—C76 | 119.12 (15) |
C4—C3—C31 | 121.70 (14) | C72—C71—P6 | 121.89 (13) |
C5—C4—C3 | 120.61 (15) | C76—C71—P6 | 118.92 (12) |
C5—C4—H4 | 119.7 | C73—C72—C71 | 120.21 (16) |
C3—C4—H4 | 119.7 | C73—C72—H72 | 119.9 |
C4—C5—C6 | 119.13 (14) | C71—C72—H72 | 119.9 |
C4—C5—H5 | 120.4 | C74—C73—C72 | 120.25 (17) |
C6—C5—H5 | 120.4 | C74—C73—H73 | 119.9 |
N1—C6—N6 | 120.36 (14) | C72—C73—H73 | 119.9 |
N1—C6—C5 | 120.80 (14) | C73—C74—C75 | 119.79 (16) |
N6—C6—C5 | 118.85 (14) | C73—C74—H74 | 120.1 |
S21—C21—H21A | 109.5 | C75—C74—H74 | 120.1 |
S21—C21—H21B | 109.5 | C74—C75—C76 | 120.39 (17) |
H21A—C21—H21B | 109.5 | C74—C75—H75 | 119.8 |
S21—C21—H21C | 109.5 | C76—C75—H75 | 119.8 |
H21A—C21—H21C | 109.5 | C75—C76—C71 | 120.22 (16) |
H21B—C21—H21C | 109.5 | C75—C76—H76 | 119.9 |
O31—C31—O32 | 122.60 (15) | C71—C76—H76 | 119.9 |
O31—C31—C3 | 124.81 (15) | C82—C81—C86 | 119.88 (15) |
O32—C31—C3 | 112.59 (13) | C82—C81—P6 | 122.25 (13) |
O32—C32—C33 | 106.83 (14) | C86—C81—P6 | 117.87 (12) |
O32—C32—H32A | 110.4 | C81—C82—C83 | 120.06 (16) |
C33—C32—H32A | 110.4 | C81—C82—H82 | 120.0 |
O32—C32—H32B | 110.4 | C83—C82—H82 | 120.0 |
C33—C32—H32B | 110.4 | C84—C83—C82 | 119.90 (16) |
H32A—C32—H32B | 108.6 | C84—C83—H83 | 120.1 |
C32—C33—H33A | 109.5 | C82—C83—H83 | 120.1 |
C32—C33—H33B | 109.5 | C83—C84—C85 | 120.07 (17) |
H33A—C33—H33B | 109.5 | C83—C84—H84 | 120.0 |
C32—C33—H33C | 109.5 | C85—C84—H84 | 120.0 |
H33A—C33—H33C | 109.5 | C84—C85—C86 | 120.70 (17) |
H33B—C33—H33C | 109.5 | C84—C85—H85 | 119.6 |
C66—C61—C62 | 119.58 (15) | C86—C85—H85 | 119.6 |
C66—C61—P6 | 119.31 (12) | C85—C86—C81 | 119.38 (16) |
C62—C61—P6 | 121.11 (12) | C85—C86—H86 | 120.3 |
C63—C62—C61 | 119.76 (16) | C81—C86—H86 | 120.3 |
| | | |
C61—P6—N6—C6 | −163.70 (13) | C61—C62—C63—C64 | 0.7 (3) |
C81—P6—N6—C6 | −46.46 (16) | C62—C63—C64—C65 | −0.2 (3) |
C71—P6—N6—C6 | 79.53 (15) | C63—C64—C65—C66 | −0.8 (3) |
C6—N1—C2—C3 | 0.4 (2) | C64—C65—C66—C61 | 1.2 (3) |
C6—N1—C2—S21 | −179.28 (11) | C62—C61—C66—C65 | −0.7 (3) |
C21—S21—C2—N1 | 11.65 (14) | P6—C61—C66—C65 | 179.90 (13) |
C21—S21—C2—C3 | −168.05 (14) | N6—P6—C71—C72 | 128.28 (14) |
N1—C2—C3—C4 | −0.2 (2) | C61—P6—C71—C72 | 12.25 (16) |
S21—C2—C3—C4 | 179.50 (12) | C81—P6—C71—C72 | −101.37 (14) |
N1—C2—C3—C31 | −178.32 (14) | N6—P6—C71—C76 | −48.76 (15) |
S21—C2—C3—C31 | 1.4 (2) | C61—P6—C71—C76 | −164.78 (13) |
C2—C3—C4—C5 | 0.5 (2) | C81—P6—C71—C76 | 81.60 (14) |
C31—C3—C4—C5 | 178.65 (15) | C76—C71—C72—C73 | −1.4 (2) |
C3—C4—C5—C6 | −1.0 (2) | P6—C71—C72—C73 | −178.42 (13) |
C2—N1—C6—N6 | 179.16 (14) | C71—C72—C73—C74 | 0.7 (3) |
C2—N1—C6—C5 | −1.0 (2) | C72—C73—C74—C75 | 0.5 (3) |
P6—N6—C6—N1 | −7.7 (2) | C73—C74—C75—C76 | −0.9 (3) |
P6—N6—C6—C5 | 172.42 (12) | C74—C75—C76—C71 | 0.1 (3) |
C4—C5—C6—N1 | 1.3 (2) | C72—C71—C76—C75 | 1.0 (2) |
C4—C5—C6—N6 | −178.83 (15) | P6—C71—C76—C75 | 178.11 (13) |
C32—O32—C31—O31 | 3.1 (2) | N6—P6—C81—C82 | 141.77 (13) |
C32—O32—C31—C3 | −176.39 (13) | C61—P6—C81—C82 | −101.93 (14) |
C2—C3—C31—O31 | −14.1 (3) | C71—P6—C81—C82 | 11.45 (16) |
C4—C3—C31—O31 | 167.84 (16) | N6—P6—C81—C86 | −38.00 (15) |
C2—C3—C31—O32 | 165.35 (14) | C61—P6—C81—C86 | 78.30 (14) |
C4—C3—C31—O32 | −12.7 (2) | C71—P6—C81—C86 | −168.32 (13) |
C31—O32—C32—C33 | −179.24 (15) | C86—C81—C82—C83 | 0.9 (2) |
N6—P6—C61—C66 | −23.95 (15) | P6—C81—C82—C83 | −178.88 (13) |
C81—P6—C61—C66 | −147.19 (13) | C81—C82—C83—C84 | −0.1 (3) |
C71—P6—C61—C66 | 99.03 (14) | C82—C83—C84—C85 | −0.7 (3) |
N6—P6—C61—C62 | 156.65 (13) | C83—C84—C85—C86 | 0.7 (3) |
C81—P6—C61—C62 | 33.41 (15) | C84—C85—C86—C81 | 0.1 (3) |
C71—P6—C61—C62 | −80.36 (15) | C82—C81—C86—C85 | −0.9 (2) |
C66—C61—C62—C63 | −0.3 (2) | P6—C81—C86—C85 | 178.88 (14) |
P6—C61—C62—C63 | 179.14 (13) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C76—H76···N1 | 0.95 | 2.43 | 3.246 (2) | 143 |
C65—H65···O31i | 0.95 | 2.50 | 3.170 (2) | 128 |
C33—H33B···Cgii | 0.99 | 2.73 | 3.560 (2) | 141 |
Symmetry codes: (i) x, y, z−1; (ii) −x+2, −y+1, −z+2. |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | C27H25N2O3P | C27H25N2O2PS |
Mr | 456.46 | 472.52 |
Crystal system, space group | Triclinic, P1 | Triclinic, P1 |
Temperature (K) | 120 | 120 |
a, b, c (Å) | 8.5336 (18), 11.063 (3), 13.426 (3) | 8.5671 (14), 11.0617 (6), 13.547 (2) |
α, β, γ (°) | 73.722 (18), 72.389 (16), 85.93 (2) | 102.987 (8), 106.417 (12), 94.596 (10) |
V (Å3) | 1159.5 (5) | 1185.7 (3) |
Z | 2 | 2 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.15 | 0.23 |
Crystal size (mm) | 0.22 × 0.20 × 0.15 | 0.46 × 0.31 × 0.29 |
|
Data collection |
Diffractometer | Bruker Nonius KappaCCD area-detector diffractometer | Bruker Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.972, 0.978 | 0.901, 0.936 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 30925, 5321, 3750 | 24840, 5400, 4362 |
Rint | 0.080 | 0.033 |
(sin θ/λ)max (Å−1) | 0.650 | 0.650 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.055, 0.121, 1.08 | 0.037, 0.098, 1.06 |
No. of reflections | 5321 | 5400 |
No. of parameters | 300 | 300 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.40 | 0.29, −0.36 |
Selected geometric parameters (Å, °) for compounds (I) and (II) topParameter | (I) | (II) |
N1-C2 | 1.319 (3) | 1.335 (2) |
C2-C3 | 1.406 (3) | 1.403 (2) |
C3-C4 | 1.401 (3) | 1.403 (2) |
C4-C5 | 1.365 (3) | 1.369 (2) |
C5-C6 | 1.413 (3) | 1.410 (2) |
C6-N1 | 1.359 (3) | 1.3581 (19) |
C3-C31 | 1.466 (3) | 1.470 (2) |
C31-O31 | 1.207 (3) | 1.212 (2) |
C6-N6 | 1.359 (3) | 1.3637 (19) |
N6-P6 | 1.5975 (18) | 1.5944 (13) |
P6-C61 | 1.792 (2) | 1.7959 (16) |
P6-C71 | 1.814 (2) | 1.8148 (17) |
P6-C81 | 1.807 (2) | 1.8050 (16) |
C6-N6-P6 | 124.01 (15) | 124.59 (11) |
N6-P6-C61 | 105.47 (10) | 104.98 (7) |
N6-P6-C71 | 115.46 (10) | 115.61 (7) |
N6-P6-C81 | 114.99 (10) | 115.68 (7) |
C61-P6-C71 | 105.61 (10) | 106.30 (7) |
C71-P6-C81 | 107.39 (10) | 106.87 (7) |
C81-P6-C61 | 107.20 (10) | 106.65 (7) |
N6-P6-C61-C62 | 158.42 (18) | 156.65 (13) |
N6-P6-C71-C72 | 124.5719) | 128.28 (14) |
N6-P6-C81-C82 | 136.53 (19) | 141.77 (13) |
P6-N6-C6-N1 | -11.1 (3) | -7.7 (2) |
N1-C2-X21-C21a | 4.8 (3) | 11.65 (14) |
C2-C3-C31-O32 | 165.7 (2) | 165.35 (14) |
C3-C31-O32-C32 | -176.17 (19) | -176.39 (13) |
C31-O32-C32-C33 | -177.9 (2) | -179.24 (15) |
Note: (a) the site X21 represents O21 in compound (I)
and S21 in compound (II). |
Hydrogen bonds and short intramolecular contacts (Å, °)
for compounds (I) and (II) topCompound | D-H···A | D-H | H···A | D···A | D-H···A |
(I) | C76-H76···N1 | 0.95 | 2.48 | 3.284 (3) | 142 |
| C64-H64···O31i | 0.95 | 2.55 | 3.138 (3) | 120 |
| C65-H65···O31i | 0.95 | 2.46 | 3.096 (3) | 124 |
| C74-H74···O31ii | 0.95 | 2.54 | 3.466 (3) | 164 |
(II) | C76-H76···N1 | 0.95 | 2.43 | 3.246 (3) | 143 |
| C65-H65···O31iii | 0.95 | 2.50 | 3.170 (2) | 128 |
| C33-H33B···Cgiv | 0.99 | 2.73 | 3.560 (2) | 141 |
Symmetry codes: (i) -1 + x, y, 1 + z; (ii) 1 - x, 2 - y, -z;
(iii) x, y, -1 + z; (iv) 2 - x, 1 - y, 2 - z.
Cg represents the centroid of the ring N1/C2–C6. |
Subscribe to Acta Crystallographica Section C: Structural Chemistry
The full text of this article is available to subscribers to the journal.
If you have already registered and are using a computer listed in your registration details, please email
support@iucr.org for assistance.
2-Aminopyridines are an important class of heterocyclic compounds with applications in the agrochemical and pharmaceutical sectors (Vijn et al., 1993), and an effective route to substituted 2-aminopyridines has been developed (Cobo et al., 1994) based on tandem Diels–Alder/retro Diels–Alder reactions of 6-aminopyrimidin-4(3H)-ones with acetylenic esters. The structures of two such products have been reported (Low et al., 1996). The triphenylphosphoranylidene unit is an effective protecting group for the 6-amino substituent (Wamhoff et al., 1986), and this is readily introduced by reaction of the aminopyrimidine precursor with triphenylphosphine in the presence of hexachloroethane (Wamhoff et al., 1986). The structures of the protected precursors, (III) and (IV) (see scheme), were reported several years ago (Low et al., 1998), and here we report the structures of the title compounds, (I) and (II), derived from (III) and (IV), respectively, using their reactions with ethyl propiolate (ethyl acetylenemonocarboxylate) conducted under microwave irradiation. While the molecular structures of compounds (I) and (II) are almost identical, their crystal structures differ considerably.
Compounds (I) and (II) both crystallize in space group P1 and the repeat vectors of the two unit cells are extremely similar, with the maximum difference, in c, being less than 1%. However, the cell angles in (II) are all close to the supplementary values in (I), i.e. each angle θ (θ = α, β or γ) in (II) corresponds rather closely to (180° - θ) in (I), such that no transformation can interconvert the two unit cells.
The molecular structures of (I) and (II) (Figs. 1 and 2) are very similar. The conformations, as defined by the leading torsion angles (Table 1), are almost identical, with the Ph3P═N fragments adopting approximate local threefold rotational symmetry, while the chain-extended ester fragment is, in both compounds, directed away from the MeX (X = O, S) substituent at C2. In each compound, there is a reasonably short intramolecular C—H···N hydrogen bond, with almost identical dimensions in the two compounds (Table 2), and these interactions may be of significance in influencing the overall molecular conformations. No such contacts are apparent in the structures of (III) and (IV) (Low et al., 1998).
With the exception of the parameters involving the MeX substituents, the corresponding bond distances in (I) and (II) are also very similar. The distances and angles around the P atoms are similar to the corresponding parameters in the precursor compounds, (III) and (IV) (Low et al., 1998). In particular, all of (I)–(IV) exhibit wide angles at N6 and all exhibit a range of ca 10° in the bond angles at P6. Within each pyridine ring, the N1—C2 bond is significantly shorter than N1—C6, while C4—C5 is significantly shorter than all of the other C—C bonds in this ring. In addition, the C3—C31 bond is somewhat short for its type (mean value 1.487 Å; Allen et al., 1987), while C31—O31 is somewhat long (mean value 1.196 Å). These observations, taken all together, support a degree of quinonoidal bond fixation within the pyridine rings, corresponding to the polarized forms (Ia) and (IIa). The bond distances in the precursor compounds, (III) and (IV), similarly show clear evidence for polarization of the molecular-electronic structures, with the short exocyclic C—N bonds, the long carbonyl C—O bonds and the similarity of the two C—C distances in the polarized fragments all pointing towards the significance of the forms (IIIa) and (IVa) in addition to the classical forms (III) and (IV).
The molecules of (I) are linked, albeit rather weakly, by three C—H···O hydrogen bonds, all involving the polarized carbonyl atom O31 as the acceptor. Atoms C64 and C65 in the molecule at (x, y, z) both act as hydrogen-bond donors to atom O31 in the molecule at (-1 + x, y, 1 + z), so forming a C(12)C(13)[R12(5)] (Bernstein et al., 1995) chain of rings running parallel to the [101] direction. Anti-parallel pairs of such chains are linked by the third C—H···O hydrogen bond to form a more complex chain containing three types of ring, with alternating centrosymmetric R22(26) and R24(24) rings and pairs of R12(5) rings flanking the R24(24) rings (Fig. 3).
By contrast, the molecules of (II) are linked by one C—H···O hydrogen bond and one C—H···π(pyridyl) hydrogen bond (Table 2), with the former generating C(12) chains running parallel to the [001] direction and the latter linking anti-parallel pairs of such chains into a chain of edge-fused centrosymmetric rings (Fig. 4). Hence, despite the almost identical intramolecular geometries of (I) and (II), their patterns of supramolecular aggregation are different. Such a contrast between the similarity in molecular structures and the difference in crystal structures could provide an interesting test for methods for crystal-structure prediction from first principles.
The original report on the structures of the precursor compounds, (III) and (IV), did not discuss the intermolecular interactions (Low et al., 1998). Analysis using the original atom coordinates shows that the molecules of (III) are linked by paired C—H···O hydrogen bonds to form a centrosymmetric R22(20) dimer (Fig. 5), while in (IV) a single C—H···O hydrogen bond links molecules related by translation into a C(9) chain (Fig. 6).