Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270108016995/sk3244sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270108016995/sk3244Isup2.hkl |
CCDC reference: 697582
A mixture of 2-amino-4-chloro-6-(N-ethyl-N-phenylamino)pyrimidin- 5-carbaldehyde (0.18 mmol) and 4-toluenesulfonic acid monohydrate (0.18 mmol) in ethanol (3 ml) was subjected to microwave irradiation in a sealed tube under magnetic stirring, using a CEM monomode microwave reactor (maximum power 300 W, ramp time 15 min, hold time 10 min, maximum temperature 573 K). The reaction mixture was then cooled in a refrigerator and the resulting solid, which proved to be a mixture of several products, was collected by filtration. Recrystallization from ethanol afforded a few crystals of the title compound as brown blocks, which proved to be suitable for single-crystal X-ray diffraction (m.p. 537–538 K).
The space group P21/n was uniquely assigned from the systematic absences. All H atoms were located in difference maps and then treated as riding atoms in geometrically idealized positions, with C—H = 0.95 (aryl), 0.98 (CH3) or 0.99 Å (CH2), and N—H = 0.88 Å, and with Uiso(H) = kUeq(carrier) where k = 1.5 for the methyl groups and 1.2 for all other H atoms.
Data collection: COLLECT (Nonius, 1999); cell refinement: DIRAX/LSQ (Duisenberg et al., 2000); data reduction: EVALCCD (Duisenberg et al., 2003); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: OSCAIL (McArdle, 2003) and SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PRPKAPPA (Ferguson, 1999).
C13H13N4O−·C7H7O3S− | F(000) = 864 |
Mr = 412.46 | Dx = 1.440 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4370 reflections |
a = 9.0213 (7) Å | θ = 3.0–27.5° |
b = 20.2880 (18) Å | µ = 0.21 mm−1 |
c = 10.3932 (6) Å | T = 120 K |
β = 90.245 (5)° | Block, brown |
V = 1902.2 (2) Å3 | 0.41 × 0.40 × 0.39 mm |
Z = 4 |
Bruker Nonius KappaCCD area-detector diffractometer | 4370 independent reflections |
Radiation source: Bruker Nonius FR591 rotating anode | 3363 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.045 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
ϕ and ω scans | h = −11→11 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −26→26 |
Tmin = 0.920, Tmax = 0.924 | l = −13→13 |
43973 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0558P)2 + 1.7964P] where P = (Fo2 + 2Fc2)/3 |
4370 reflections | (Δ/σ)max = 0.001 |
265 parameters | Δρmax = 0.67 e Å−3 |
0 restraints | Δρmin = −0.53 e Å−3 |
C13H13N4O−·C7H7O3S− | V = 1902.2 (2) Å3 |
Mr = 412.46 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.0213 (7) Å | µ = 0.21 mm−1 |
b = 20.2880 (18) Å | T = 120 K |
c = 10.3932 (6) Å | 0.41 × 0.40 × 0.39 mm |
β = 90.245 (5)° |
Bruker Nonius KappaCCD area-detector diffractometer | 4370 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 3363 reflections with I > 2σ(I) |
Tmin = 0.920, Tmax = 0.924 | Rint = 0.045 |
43973 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.67 e Å−3 |
4370 reflections | Δρmin = −0.53 e Å−3 |
265 parameters |
x | y | z | Uiso*/Ueq | ||
O4 | 0.64589 (16) | 0.54921 (7) | 0.33102 (14) | 0.0266 (3) | |
N1 | 0.29440 (18) | 0.43190 (8) | 0.23268 (15) | 0.0194 (3) | |
N2 | 0.17135 (19) | 0.48063 (8) | 0.39913 (16) | 0.0238 (4) | |
N3 | 0.41094 (18) | 0.51349 (8) | 0.36439 (15) | 0.0199 (3) | |
N10 | 0.42389 (18) | 0.38463 (8) | 0.06496 (15) | 0.0203 (3) | |
C2 | 0.2930 (2) | 0.47483 (9) | 0.33136 (18) | 0.0199 (4) | |
C4 | 0.5437 (2) | 0.51338 (9) | 0.29960 (18) | 0.0202 (4) | |
C4a | 0.5482 (2) | 0.46738 (9) | 0.19008 (17) | 0.0191 (4) | |
C5 | 0.6715 (2) | 0.46203 (10) | 0.11567 (18) | 0.0218 (4) | |
C5a | 0.6715 (2) | 0.41993 (9) | 0.00712 (18) | 0.0208 (4) | |
C6 | 0.7934 (2) | 0.41660 (10) | −0.07698 (19) | 0.0253 (4) | |
C7 | 0.7895 (2) | 0.37683 (11) | −0.18338 (19) | 0.0277 (5) | |
C8 | 0.6627 (3) | 0.33927 (11) | −0.20807 (19) | 0.0280 (5) | |
C9 | 0.5418 (2) | 0.34050 (10) | −0.12797 (19) | 0.0258 (4) | |
C9a | 0.5442 (2) | 0.38107 (9) | −0.01786 (18) | 0.0207 (4) | |
C10a | 0.4193 (2) | 0.42838 (9) | 0.16462 (17) | 0.0179 (4) | |
C101 | 0.2940 (2) | 0.34104 (10) | 0.04370 (19) | 0.0247 (4) | |
C102 | 0.1849 (3) | 0.37210 (11) | −0.0497 (2) | 0.0310 (5) | |
S21 | 0.21577 (5) | 0.63290 (2) | 0.57680 (4) | 0.01933 (14) | |
O21 | 0.16066 (18) | 0.67555 (8) | 0.47577 (13) | 0.0325 (4) | |
O22 | 0.36624 (15) | 0.60961 (7) | 0.55342 (13) | 0.0236 (3) | |
O23 | 0.11580 (16) | 0.57842 (7) | 0.60677 (15) | 0.0312 (4) | |
C21 | 0.2251 (2) | 0.68253 (9) | 0.71609 (17) | 0.0180 (4) | |
C22 | 0.3549 (2) | 0.71581 (10) | 0.74558 (19) | 0.0222 (4) | |
C23 | 0.3588 (2) | 0.75895 (10) | 0.84913 (19) | 0.0249 (4) | |
C24 | 0.2331 (2) | 0.76964 (9) | 0.92384 (18) | 0.0225 (4) | |
C25 | 0.1042 (2) | 0.73578 (10) | 0.89278 (19) | 0.0241 (4) | |
C26 | 0.0988 (2) | 0.69193 (10) | 0.79000 (18) | 0.0221 (4) | |
C241 | 0.2368 (3) | 0.81646 (11) | 1.0356 (2) | 0.0305 (5) | |
H2A | 0.0959 | 0.4547 | 0.3811 | 0.029* | |
H2B | 0.1676 | 0.5059 | 0.4678 | 0.029* | |
H3 | 0.4008 | 0.5422 | 0.4272 | 0.024* | |
H5 | 0.7579 | 0.4866 | 0.1367 | 0.026* | |
H6 | 0.8793 | 0.4422 | −0.0596 | 0.030* | |
H7 | 0.8719 | 0.3748 | −0.2398 | 0.033* | |
H8 | 0.6600 | 0.3120 | −0.2824 | 0.034* | |
H9 | 0.4572 | 0.3142 | −0.1467 | 0.031* | |
H10a | 0.2442 | 0.3327 | 0.1268 | 0.030* | |
H10B | 0.3279 | 0.2982 | 0.0091 | 0.030* | |
H10C | 0.1460 | 0.4130 | −0.0127 | 0.047* | |
H10D | 0.1030 | 0.3415 | −0.0658 | 0.047* | |
H10E | 0.2352 | 0.3819 | −0.1308 | 0.047* | |
H22 | 0.4411 | 0.7091 | 0.6950 | 0.027* | |
H23 | 0.4483 | 0.7815 | 0.8694 | 0.030* | |
H25 | 0.0177 | 0.7427 | 0.9428 | 0.029* | |
H26 | 0.0100 | 0.6687 | 0.7706 | 0.027* | |
H24a | 0.2238 | 0.7918 | 1.1159 | 0.046* | |
H24B | 0.1566 | 0.8487 | 1.0264 | 0.046* | |
H24C | 0.3323 | 0.8394 | 1.0375 | 0.046* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O4 | 0.0260 (7) | 0.0255 (8) | 0.0283 (7) | −0.0034 (6) | −0.0009 (6) | −0.0060 (6) |
N1 | 0.0244 (8) | 0.0147 (7) | 0.0192 (7) | −0.0007 (6) | 0.0020 (6) | −0.0023 (6) |
N2 | 0.0264 (9) | 0.0196 (8) | 0.0254 (8) | −0.0032 (7) | 0.0040 (7) | −0.0072 (7) |
N3 | 0.0236 (8) | 0.0165 (8) | 0.0196 (8) | 0.0016 (6) | 0.0004 (6) | −0.0041 (6) |
N10 | 0.0258 (9) | 0.0159 (8) | 0.0191 (8) | 0.0004 (6) | 0.0014 (6) | −0.0017 (6) |
C2 | 0.0240 (10) | 0.0149 (9) | 0.0209 (9) | 0.0007 (7) | −0.0009 (7) | 0.0021 (7) |
C4 | 0.0237 (10) | 0.0167 (9) | 0.0203 (9) | 0.0017 (7) | −0.0011 (7) | 0.0006 (7) |
C4a | 0.0239 (10) | 0.0145 (9) | 0.0189 (9) | 0.0014 (7) | −0.0005 (7) | 0.0013 (7) |
C5 | 0.0235 (10) | 0.0204 (9) | 0.0213 (9) | 0.0016 (8) | −0.0014 (7) | 0.0008 (7) |
C5a | 0.0234 (10) | 0.0199 (9) | 0.0190 (9) | 0.0055 (8) | 0.0005 (7) | 0.0020 (7) |
C6 | 0.0257 (10) | 0.0267 (10) | 0.0233 (10) | 0.0032 (8) | 0.0019 (8) | 0.0022 (8) |
C7 | 0.0304 (11) | 0.0315 (11) | 0.0213 (10) | 0.0094 (9) | 0.0047 (8) | 0.0020 (8) |
C8 | 0.0390 (12) | 0.0251 (11) | 0.0199 (9) | 0.0072 (9) | 0.0029 (8) | −0.0027 (8) |
C9 | 0.0349 (11) | 0.0206 (10) | 0.0220 (9) | 0.0015 (8) | 0.0009 (8) | −0.0020 (8) |
C9a | 0.0263 (10) | 0.0174 (9) | 0.0184 (9) | 0.0046 (8) | 0.0019 (7) | 0.0008 (7) |
C10a | 0.0243 (10) | 0.0130 (8) | 0.0162 (8) | 0.0025 (7) | −0.0007 (7) | 0.0014 (7) |
C101 | 0.0332 (11) | 0.0177 (9) | 0.0233 (9) | −0.0065 (8) | 0.0043 (8) | −0.0035 (8) |
C102 | 0.0320 (12) | 0.0312 (12) | 0.0299 (11) | −0.0089 (9) | −0.0033 (9) | −0.0032 (9) |
S21 | 0.0218 (2) | 0.0176 (2) | 0.0186 (2) | 0.00133 (18) | −0.00020 (17) | −0.00366 (17) |
O21 | 0.0461 (9) | 0.0324 (8) | 0.0189 (7) | 0.0144 (7) | −0.0065 (6) | −0.0030 (6) |
O22 | 0.0223 (7) | 0.0231 (7) | 0.0254 (7) | 0.0029 (6) | 0.0011 (6) | −0.0069 (6) |
O23 | 0.0291 (8) | 0.0268 (8) | 0.0377 (8) | −0.0098 (6) | 0.0075 (7) | −0.0123 (6) |
C21 | 0.0228 (9) | 0.0138 (8) | 0.0173 (8) | 0.0013 (7) | −0.0003 (7) | 0.0010 (7) |
C22 | 0.0213 (10) | 0.0222 (10) | 0.0230 (9) | −0.0005 (8) | 0.0023 (8) | −0.0029 (8) |
C23 | 0.0251 (10) | 0.0231 (10) | 0.0264 (10) | −0.0038 (8) | −0.0027 (8) | −0.0045 (8) |
C24 | 0.0316 (10) | 0.0173 (9) | 0.0185 (9) | 0.0040 (8) | −0.0032 (8) | −0.0011 (7) |
C25 | 0.0258 (10) | 0.0239 (10) | 0.0226 (9) | 0.0015 (8) | 0.0044 (8) | −0.0019 (8) |
C26 | 0.0209 (9) | 0.0221 (10) | 0.0233 (9) | −0.0018 (8) | 0.0008 (7) | −0.0029 (8) |
C241 | 0.0390 (12) | 0.0274 (11) | 0.0250 (10) | 0.0023 (9) | −0.0040 (9) | −0.0095 (9) |
N1—C2 | 1.346 (2) | C9—H9 | 0.95 |
C2—N3 | 1.364 (2) | C101—C102 | 1.516 (3) |
N3—C4 | 1.377 (2) | C101—H10a | 0.99 |
C4—C4a | 1.473 (3) | C101—H10B | 0.99 |
C4a—C5 | 1.362 (3) | C102—H10C | 0.98 |
C5—C5a | 1.415 (3) | C102—H10D | 0.98 |
C5a—C6 | 1.410 (3) | C102—H10E | 0.98 |
C6—C7 | 1.369 (3) | S21—O21 | 1.4471 (15) |
C7—C8 | 1.397 (3) | S21—O22 | 1.4586 (14) |
C8—C9 | 1.376 (3) | S21—O23 | 1.4610 (15) |
C9—C9a | 1.410 (3) | S21—C21 | 1.7650 (18) |
C9a—N10 | 1.390 (2) | C21—C22 | 1.385 (3) |
N10—C10a | 1.365 (2) | C21—C26 | 1.390 (3) |
C10a—N1 | 1.335 (2) | C22—C23 | 1.387 (3) |
C4a—C10a | 1.430 (3) | C22—H22 | 0.95 |
C5a—C9a | 1.416 (3) | C23—C24 | 1.395 (3) |
C2—N2 | 1.312 (3) | C23—H23 | 0.95 |
C4—O4 | 1.217 (2) | C24—C25 | 1.387 (3) |
N2—H2A | 0.88 | C24—C241 | 1.501 (3) |
N2—H2B | 0.88 | C25—C26 | 1.391 (3) |
N3—H3 | 0.88 | C25—H25 | 0.95 |
N10—C101 | 1.484 (3) | C26—H26 | 0.95 |
C5—H5 | 0.95 | C241—H24a | 0.98 |
C6—H6 | 0.95 | C241—H24B | 0.98 |
C7—H7 | 0.95 | C241—H24C | 0.98 |
C8—H8 | 0.95 | ||
C10a—N1—C2 | 116.69 (16) | N10—C101—C102 | 110.95 (16) |
C2—N2—H2A | 118.7 | N10—C101—H10a | 109.4 |
C2—N2—H2B | 121.6 | C102—C101—H10a | 109.4 |
H2A—N2—H2B | 119.3 | N10—C101—H10B | 109.4 |
C2—N3—C4 | 123.72 (16) | C102—C101—H10B | 109.4 |
C2—N3—H3 | 118.9 | H10a—C101—H10B | 108.0 |
C4—N3—H3 | 117.2 | C101—C102—H10C | 109.5 |
C10a—N10—C9a | 122.03 (16) | C101—C102—H10D | 109.5 |
C10a—N10—C101 | 118.30 (16) | H10C—C102—H10D | 109.5 |
C9a—N10—C101 | 119.65 (16) | C101—C102—H10E | 109.5 |
N2—C2—N1 | 118.54 (17) | H10C—C102—H10E | 109.5 |
N2—C2—N3 | 117.81 (17) | H10D—C102—H10E | 109.5 |
N1—C2—N3 | 123.65 (17) | O21—S21—O22 | 112.95 (9) |
O4—C4—N3 | 121.81 (17) | O21—S21—O23 | 113.37 (10) |
O4—C4—C4a | 124.25 (18) | O22—S21—O23 | 111.48 (9) |
N3—C4—C4a | 113.93 (16) | O21—S21—C21 | 105.60 (9) |
C5—C4a—C10a | 121.09 (17) | O22—S21—C21 | 106.28 (9) |
C5—C4a—C4 | 120.94 (17) | O23—S21—C21 | 106.49 (9) |
C10a—C4a—C4 | 117.97 (16) | C22—C21—C26 | 120.34 (17) |
C4a—C5—C5a | 120.20 (18) | C22—C21—S21 | 119.78 (14) |
C4a—C5—H5 | 119.9 | C26—C21—S21 | 119.69 (15) |
C5a—C5—H5 | 119.9 | C21—C22—C23 | 119.85 (18) |
C6—C5a—C5 | 121.70 (19) | C21—C22—H22 | 120.1 |
C6—C5a—C9a | 119.61 (18) | C23—C22—H22 | 120.1 |
C5—C5a—C9a | 118.68 (17) | C22—C23—C24 | 120.80 (18) |
C7—C6—C5a | 120.7 (2) | C22—C23—H23 | 119.6 |
C7—C6—H6 | 119.6 | C24—C23—H23 | 119.6 |
C5a—C6—H6 | 119.6 | C25—C24—C23 | 118.46 (18) |
C6—C7—C8 | 119.24 (19) | C25—C24—C241 | 120.62 (19) |
C6—C7—H7 | 120.4 | C23—C24—C241 | 120.92 (19) |
C8—C7—H7 | 120.4 | C24—C25—C26 | 121.46 (18) |
C9—C8—C7 | 121.99 (19) | C24—C25—H25 | 119.3 |
C9—C8—H8 | 119.0 | C26—C25—H25 | 119.3 |
C7—C8—H8 | 119.0 | C21—C26—C25 | 119.09 (18) |
C8—C9—C9a | 119.5 (2) | C21—C26—H26 | 120.5 |
C8—C9—H9 | 120.3 | C25—C26—H26 | 120.5 |
C9a—C9—H9 | 120.3 | C24—C241—H24a | 109.5 |
N10—C9a—C9 | 121.59 (18) | C24—C241—H24B | 109.5 |
N10—C9a—C5a | 119.48 (17) | H24a—C241—H24B | 109.5 |
C9—C9a—C5a | 118.91 (18) | C24—C241—H24C | 109.5 |
N1—C10a—N10 | 117.75 (17) | H24a—C241—H24C | 109.5 |
N1—C10a—C4a | 124.03 (17) | H24B—C241—H24C | 109.5 |
N10—C10a—C4a | 118.22 (16) | ||
C10a—N1—C2—N2 | 178.75 (17) | C2—N1—C10a—N10 | 179.26 (16) |
C10a—N1—C2—N3 | −0.5 (3) | C2—N1—C10a—C4a | −0.5 (3) |
C4—N3—C2—N2 | −178.48 (17) | C9a—N10—C10a—N1 | 174.71 (17) |
C4—N3—C2—N1 | 0.7 (3) | C101—N10—C10a—N1 | −3.7 (2) |
C2—N3—C4—O4 | 179.07 (17) | C9a—N10—C10a—C4a | −5.5 (3) |
C2—N3—C4—C4a | 0.0 (3) | C101—N10—C10a—C4a | 176.05 (16) |
O4—C4—C4a—C5 | 0.3 (3) | C5—C4a—C10a—N1 | −179.06 (18) |
N3—C4—C4a—C5 | 179.39 (17) | C4—C4a—C10a—N1 | 1.2 (3) |
O4—C4—C4a—C10a | −179.91 (18) | C5—C4a—C10a—N10 | 1.2 (3) |
N3—C4—C4a—C10a | −0.8 (2) | C4—C4a—C10a—N10 | −178.60 (16) |
C10a—C4a—C5—C5a | 3.3 (3) | C9a—N10—C101—C102 | −86.8 (2) |
C4—C4a—C5—C5a | −176.96 (17) | C10a—N10—C101—C102 | 91.7 (2) |
C4a—C5—C5a—C6 | 175.58 (18) | O21—S21—C21—C22 | −91.58 (17) |
C4a—C5—C5a—C9a | −3.5 (3) | O22—S21—C21—C22 | 28.64 (18) |
C5—C5a—C6—C7 | −178.24 (18) | O23—S21—C21—C22 | 147.61 (16) |
C9a—C5a—C6—C7 | 0.8 (3) | O21—S21—C21—C26 | 83.54 (17) |
C5a—C6—C7—C8 | 0.0 (3) | O22—S21—C21—C26 | −156.24 (15) |
C6—C7—C8—C9 | −0.6 (3) | O23—S21—C21—C26 | −37.27 (18) |
C7—C8—C9—C9a | 0.4 (3) | C26—C21—C22—C23 | −0.2 (3) |
C10a—N10—C9a—C9 | −173.51 (18) | S21—C21—C22—C23 | 174.84 (15) |
C101—N10—C9a—C9 | 4.9 (3) | C21—C22—C23—C24 | −0.4 (3) |
C10a—N10—C9a—C5a | 5.3 (3) | C22—C23—C24—C25 | 0.4 (3) |
C101—N10—C9a—C5a | −176.29 (17) | C22—C23—C24—C241 | −179.77 (19) |
C8—C9—C9a—N10 | 179.13 (18) | C23—C24—C25—C26 | 0.1 (3) |
C8—C9—C9a—C5a | 0.3 (3) | C241—C24—C25—C26 | −179.65 (19) |
C6—C5a—C9a—N10 | −179.76 (17) | C22—C21—C26—C25 | 0.8 (3) |
C5—C5a—C9a—N10 | −0.7 (3) | S21—C21—C26—C25 | −174.28 (15) |
C6—C5a—C9a—C9 | −0.9 (3) | C24—C25—C26—C21 | −0.8 (3) |
C5—C5a—C9a—C9 | 178.14 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O23i | 0.88 | 2.03 | 2.855 (2) | 156 |
N2—H2B···O23 | 0.88 | 2.11 | 2.976 (2) | 166 |
N3—H3···O22 | 0.88 | 1.92 | 2.799 (2) | 174 |
C23—H23···O21ii | 0.95 | 2.37 | 3.299 (3) | 164 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x+1/2, −y+3/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C13H13N4O−·C7H7O3S− |
Mr | 412.46 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 120 |
a, b, c (Å) | 9.0213 (7), 20.2880 (18), 10.3932 (6) |
β (°) | 90.245 (5) |
V (Å3) | 1902.2 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.21 |
Crystal size (mm) | 0.41 × 0.40 × 0.39 |
Data collection | |
Diffractometer | Bruker Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.920, 0.924 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 43973, 4370, 3363 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.127, 1.08 |
No. of reflections | 4370 |
No. of parameters | 265 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.67, −0.53 |
Computer programs: COLLECT (Nonius, 1999), DIRAX/LSQ (Duisenberg et al., 2000), EVALCCD (Duisenberg et al., 2003), SIR2004 (Burla et al., 2005), OSCAIL (McArdle, 2003) and SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2003), SHELXL97 (Sheldrick, 2008) and PRPKAPPA (Ferguson, 1999).
N1—C2 | 1.346 (2) | C8—C9 | 1.376 (3) |
C2—N3 | 1.364 (2) | C9—C9a | 1.410 (3) |
N3—C4 | 1.377 (2) | C9a—N10 | 1.390 (2) |
C4—C4a | 1.473 (3) | N10—C10a | 1.365 (2) |
C4a—C5 | 1.362 (3) | C10a—N1 | 1.335 (2) |
C5—C5a | 1.415 (3) | C4a—C10a | 1.430 (3) |
C5a—C6 | 1.410 (3) | C5a—C9a | 1.416 (3) |
C6—C7 | 1.369 (3) | C2—N2 | 1.312 (3) |
C7—C8 | 1.397 (3) | C4—O4 | 1.217 (2) |
C9a—N10—C101—C102 | −86.8 (2) | C10a—N10—C101—C102 | 91.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O23i | 0.88 | 2.03 | 2.855 (2) | 156 |
N2—H2B···O23 | 0.88 | 2.11 | 2.976 (2) | 166 |
N3—H3···O22 | 0.88 | 1.92 | 2.799 (2) | 174 |
C23—H23···O21ii | 0.95 | 2.37 | 3.299 (3) | 164 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x+1/2, −y+3/2, z+1/2. |
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The synthesis and study of fused pyrimidine compounds is of interest due to the wide variety of their biological and pharmacological properties. In particular, pyrimidinoquinolines have found application as antitumour agents (Chua et al., 2008; Weissman & Yang, 2007), as biocidal agents (Kumar et al., 2002) and as antiallergic agents (Althuis et al., 1980). Compounds of this type have been prepared from 5-formyl-4,6-dichloropyrimidines using a two-step sequence consisting of a monosubstitution with aromatic amines (Quiroga et al., 2008) followed by an acid-catalysed Bradsher-type cyclocondensation. The title compound, (I), was isolated in small quantity from an attempt to induce such cyclocondensation using 4-toluenesulfonic acid under microwave irradiation.
The title compound is a salt, C13H13N4O+.C7H7O3S-, for which the asymmetric unit was selected so that the two independent ions are linked within the asymmetric unit by two N—H···O hydrogen bonds, which are both almost linear (Fig. 1, Table 2). The dihedral angle between the mean plane of the tricyclic ring system of the cation and the aryl ring of the anion is only 5.4 (2)°, so that the non-H atoms of the ring systems within the asymmetric unit are almost coplanar. The main deviations from the near-planarity are found for the O atoms of the sulfonate group and the N-ethyl group pendent from the cation, the plane of which is almost orthogonal to that of the adjacent ring (Table 1).
Within the cation, the peripheral and exocyclic bond distances (Table 1) exhibit some interesting values. Amongst the peripheral C—C distances, the bonds C4a—C5, C6—C7 and C8—C9 are all significantly shorter than the remainder, indicating a degree of double-bond fixation. Of the C—N distances, the exocyclic distance C2—N2 is the shortest by some margin, the ring distances C2—N1 and C8a—N1 [C10a—N1?] are longer than C2—N2, and fairly similar to each other, the distances C2—N3 and C8a—N10 [C10a—N10?] are longer still and are also similar to each other, the amidic bond C4—N3 is long for its type with a distance more typical of C—N bonds in bis-acyl imines (Allen et al., 1987), while C9a—N10 is the longest of all the C—N bonds. The C2—N2 distance is, in fact, rather typical of those found in guanidinium cations (Allen et al., 1987), and it is close in value to the length of 1.3195 (9) Å of the corresponding bond in the cation, (II), in its sulfate salt [Cambridge Structural Database (Allen, 2002) refcode HACDEU; Bieri et al., 1993]. This distance is also consistent with the character of the C4—N3 bond, and these observations suggest that the positive charge which is formally localized at N2 is, in fact, best described as delocalized over atoms N2, N3 and N10, as in forms (Ia)–(Ic) (see scheme). The cation can thus be regarded as a protonated iminouracil derivative.
As noted above, the two independent ions within the asymmetric unit of (I) are linked by two N—H···O hydrogen bonds, both of which are almost linear. In addition, pairs of these units are linked by a third N—H···O hydrogen bond (Table 2) to form a centrosymmetric four-ion aggregate in which the central R24(8) (Bernstein et al., 1995) ring is flanked by two symmetry-equivalent R22(8) rings (Fig. 2). These aggregates can be regarded as the basic building block for the structure as a whole and a single C—H···O hydrogen bond (Table 2) links these building blocks into sheets.
The aryl atoms C23 at (x, y, z) and (-x, 1 - y, 1 - z) are components of the aggregate centred at (0, 1/2, 1/2). These two atoms act as hydrogen-bond donors to the sulfonate atoms O21 at (1/2 + x, 1.5 - y, 1/2 + z) and (-1/2 - x, -1/2 + y, 1/2 - z), respectively, which themselves are components of the aggregates centred at (1/2, 1, 1) and (-1/2, 0, 0), respectively. Similarly, the atoms O21 at (x, y, z) and (-x, 1 - y, 1 - z) accept hydrogen bonds from the atoms C23 at (-1/2 + x, 3/2 - y, -1/2 + z) and (1/2 - x, -1/2 + y, 3/2 - z), respectively, which are components of the aggregates centred at (-1/2, 1, 0) and (1/2, 0, 1). Propagation of this interaction by the space group links the centrosymmetric four-ion aggregates into a sheet parallel to (101) and built from a combination of R22(8), R24(8) and R88(40) rings (Fig. 3). Thus, a single hydrogen bond is sufficient to link the centrosymmetric four-ion entities into a two-dimensional structure. There are no direction-specific interactions between adjacent sheets. By contrast, in HACDEU, where there are nine independent N—H bonds all participating in hydrogen-bond formation, the overall hydrogen-bonded supramolecular structure is three-dimensional.