Cl and N—H
O hydrogen bonds to form sheets parallel to (010). In hydrated hydrohalide salt (III), bromide ions are hydrogen bonded to amine and ammonium groups to form R42(8) rings. The water behaves as a double donor/single acceptor and, along with the bromide anions, forms hydrogen bonds involving the nitro, amine, and ammonium groups. The result is sheets parallel to (001) composed of alternating R55(15) and R64(24) rings. Ammonium N—H
Br interactions join the sheets to form a three-dimensional extended structure. Energy-minimized structures obtained using DFT and MP2 calculations are consistent with the solid-state structures. Consistent with (II) and (III), calculations show that protonation of the amine group meta to the nitro group results in a structure that is about 1.5 kJ mol−1 more stable than that obtained by protonation of the para-amine group. DFT calculations on single molecules and hydrogen-bonded pairs of molecules based on structural results obtained for (I) and for 3-nitrobenzene-1,2-diamine, (IV) [Betz & Gerber (2011). Acta Cryst. E67, o1359] were used to estimate the strength of the N—H
O(nitro) interactions for three observed motifs. The hydrogen-bonding interaction between the pairs of molecules examined was found to correspond to 20–30 kJ mol−1.Supporting information
CCDC references: 1007681; 1007682; 1007683
For all compounds, data collection: APEX2 (Bruker, 2013); cell refinement: APEX2 (Bruker, 2013); data reduction: SAINT (Bruker, 2013); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).
| C6H7N3O2 | Dx = 1.530 Mg m−3 |
| Mr = 153.15 | Mo Kα radiation, λ = 0.71073 Å |
| Orthorhombic, P212121 | Cell parameters from 99 reflections |
| a = 3.7492 (6) Å | θ = 4.6–21.5° |
| b = 10.2864 (19) Å | µ = 0.12 mm−1 |
| c = 17.238 (3) Å | T = 199 K |
| V = 664.8 (2) Å3 | Plate, clear orange |
| Z = 4 | 0.65 × 0.50 × 0.05 mm |
| F(000) = 320 |
| Bruker SMART X2S benchtop diffractometer | 1170 independent reflections |
| Radiation source: sealed microfocus tube | 1010 reflections with I > 2σ(I) |
| Doubly curved silicon crystal monochromator | Rint = 0.066 |
| Detector resolution: 8.3330 pixels mm-1 | θmax = 25.0°, θmin = 3.1° |
| ω scans | h = −4→4 |
| Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −12→12 |
| Tmin = 0.46, Tmax = 0.99 | l = −20→20 |
| 7773 measured reflections |
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.030 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.072 | w = 1/[σ2(Fo2) + (0.03917P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.04 | (Δ/σ)max < 0.001 |
| 1170 reflections | Δρmax = 0.12 e Å−3 |
| 116 parameters | Δρmin = −0.15 e Å−3 |
| 0 restraints | Absolute structure: Flack x determined using 354 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.8 (10) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refined as a 2-component inversion twin. |
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.9592 (5) | 1.03420 (17) | 1.12307 (9) | 0.0569 (6) | |
| O2 | 0.7070 (5) | 0.85290 (16) | 1.08963 (9) | 0.0520 (5) | |
| N1 | 0.9475 (7) | 1.1026 (2) | 0.76269 (11) | 0.0475 (6) | |
| H1A | 1.060 (7) | 1.174 (3) | 0.7478 (15) | 0.067 (10)* | |
| H1B | 0.850 (7) | 1.055 (3) | 0.7259 (15) | 0.055 (8)* | |
| N2 | 0.6432 (6) | 0.8605 (2) | 0.79985 (12) | 0.0391 (5) | |
| H2A | 0.543 (7) | 0.902 (3) | 0.7594 (17) | 0.056 (8)* | |
| H2B | 0.525 (8) | 0.804 (3) | 0.8184 (17) | 0.066 (10)* | |
| N3 | 0.8486 (5) | 0.95831 (19) | 1.07251 (9) | 0.0363 (5) | |
| C1 | 0.9249 (6) | 1.0660 (2) | 0.83812 (11) | 0.0300 (5) | |
| C2 | 0.7666 (6) | 0.9449 (2) | 0.85884 (11) | 0.0286 (5) | |
| C3 | 0.7492 (5) | 0.90992 (19) | 0.93576 (11) | 0.0294 (5) | |
| H3 | 0.6461 | 0.8291 | 0.9502 | 0.035* | |
| C4 | 0.8828 (5) | 0.9931 (2) | 0.99237 (11) | 0.0289 (5) | |
| C5 | 1.0380 (5) | 1.11164 (19) | 0.97364 (12) | 0.0299 (5) | |
| H5 | 1.1292 | 1.1671 | 1.013 | 0.036* | |
| C6 | 1.0567 (6) | 1.1467 (2) | 0.89689 (12) | 0.0323 (5) | |
| H6 | 1.1615 | 1.2276 | 0.8833 | 0.039* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0906 (14) | 0.0496 (11) | 0.0305 (8) | −0.0074 (11) | −0.0053 (9) | −0.0078 (8) |
| O2 | 0.0811 (13) | 0.0360 (9) | 0.0389 (9) | −0.0070 (10) | 0.0097 (9) | 0.0071 (8) |
| N1 | 0.0657 (16) | 0.0484 (13) | 0.0282 (10) | −0.0118 (12) | −0.0008 (10) | 0.0069 (10) |
| N2 | 0.0504 (13) | 0.0339 (11) | 0.0329 (10) | −0.0044 (11) | −0.0031 (10) | −0.0060 (9) |
| N3 | 0.0470 (12) | 0.0314 (11) | 0.0304 (9) | 0.0057 (9) | 0.0025 (8) | −0.0011 (9) |
| C1 | 0.0306 (11) | 0.0293 (12) | 0.0301 (10) | 0.0047 (9) | 0.0025 (9) | 0.0018 (9) |
| C2 | 0.0298 (12) | 0.0248 (10) | 0.0312 (10) | 0.0044 (10) | −0.0001 (9) | −0.0042 (9) |
| C3 | 0.0324 (11) | 0.0212 (10) | 0.0347 (10) | 0.0026 (10) | 0.0039 (11) | −0.0014 (9) |
| C4 | 0.0335 (12) | 0.0249 (11) | 0.0282 (10) | 0.0058 (10) | 0.0022 (8) | −0.0013 (8) |
| C5 | 0.0318 (12) | 0.0264 (11) | 0.0316 (10) | 0.0009 (10) | 0.0002 (10) | −0.0050 (9) |
| C6 | 0.0335 (11) | 0.0253 (10) | 0.0380 (11) | −0.0010 (10) | 0.0023 (9) | 0.0009 (9) |
| O1—N3 | 1.241 (2) | C1—C6 | 1.399 (3) |
| O2—N3 | 1.243 (2) | C1—C2 | 1.426 (3) |
| N1—C1 | 1.356 (3) | C2—C3 | 1.375 (3) |
| N1—H1A | 0.88 (3) | C3—C4 | 1.391 (3) |
| N1—H1B | 0.88 (3) | C3—H3 | 0.95 |
| N2—C2 | 1.415 (3) | C4—C5 | 1.389 (3) |
| N2—H2A | 0.90 (3) | C5—C6 | 1.373 (3) |
| N2—H2B | 0.80 (3) | C5—H5 | 0.95 |
| N3—C4 | 1.433 (3) | C6—H6 | 0.95 |
| C1—N1—H1A | 122.5 (18) | N2—C2—C1 | 119.50 (18) |
| C1—N1—H1B | 120.8 (17) | C2—C3—C4 | 119.89 (19) |
| H1A—N1—H1B | 117 (2) | C2—C3—H3 | 120.1 |
| C2—N2—H2A | 113.6 (18) | C4—C3—H3 | 120.1 |
| C2—N2—H2B | 110 (2) | C5—C4—C3 | 121.86 (18) |
| H2A—N2—H2B | 115 (3) | C5—C4—N3 | 118.74 (18) |
| O1—N3—O2 | 121.65 (17) | C3—C4—N3 | 119.36 (18) |
| O1—N3—C4 | 119.33 (19) | C6—C5—C4 | 118.40 (19) |
| O2—N3—C4 | 119.02 (18) | C6—C5—H5 | 120.8 |
| N1—C1—C6 | 120.5 (2) | C4—C5—H5 | 120.8 |
| N1—C1—C2 | 120.6 (2) | C5—C6—C1 | 121.6 (2) |
| C6—C1—C2 | 118.94 (17) | C5—C6—H6 | 119.2 |
| C3—C2—N2 | 121.1 (2) | C1—C6—H6 | 119.2 |
| C3—C2—C1 | 119.32 (18) | ||
| N1—C1—C2—C3 | 179.6 (2) | O2—N3—C4—C5 | 179.37 (18) |
| C6—C1—C2—C3 | −0.4 (3) | O1—N3—C4—C3 | −178.08 (19) |
| N1—C1—C2—N2 | 2.1 (3) | O2—N3—C4—C3 | 1.6 (3) |
| C6—C1—C2—N2 | −177.9 (2) | C3—C4—C5—C6 | 0.3 (3) |
| N2—C2—C3—C4 | 177.97 (19) | N3—C4—C5—C6 | −177.4 (2) |
| C1—C2—C3—C4 | 0.5 (3) | C4—C5—C6—C1 | −0.2 (3) |
| C2—C3—C4—C5 | −0.5 (3) | N1—C1—C6—C5 | −179.8 (2) |
| C2—C3—C4—N3 | 177.19 (19) | C2—C1—C6—C5 | 0.2 (3) |
| O1—N3—C4—C5 | −0.3 (3) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1A···N2i | 0.88 (3) | 2.37 (3) | 3.249 (3) | 177 (2) |
| N1—H1B···O1ii | 0.88 (3) | 2.31 (3) | 3.178 (3) | 169 (2) |
| N1—H1B···O2ii | 0.88 (3) | 2.54 (3) | 3.073 (3) | 120 (2) |
| N2—H2A···O1ii | 0.90 (3) | 2.44 (3) | 3.257 (3) | 151 (2) |
| N2—H2B···O2iii | 0.80 (3) | 2.55 (3) | 3.335 (3) | 165 (3) |
| C3—H3···O2iii | 0.95 | 2.59 | 3.411 (3) | 145 |
| Symmetry codes: (i) −x+2, y+1/2, −z+3/2; (ii) −x+3/2, −y+2, z−1/2; (iii) x−1/2, −y+3/2, −z+2. |
| C6H8N3O2+·Cl− | F(000) = 392 |
| Mr = 189.60 | Dx = 1.547 Mg m−3 |
| Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
| a = 4.4743 (11) Å | Cell parameters from 123 reflections |
| b = 29.757 (7) Å | θ = 0.2–20.7° |
| c = 6.1706 (15) Å | µ = 0.43 mm−1 |
| β = 97.774 (8)° | T = 200 K |
| V = 814.0 (3) Å3 | Plate, colourless |
| Z = 4 | 0.50 × 0.20 × 0.05 mm |
| Bruker SMART X2S benchtop diffractometer | 2353 independent reflections |
| Radiation source: sealed microfocus tube | 1707 reflections with I > 2σ(I) |
| Doubly curved silicon crystal monochromator | Rint = 0.073 |
| Detector resolution: 8.3330 pixels mm-1 | θmax = 25.1°, θmin = 2.7° |
| ω scans | h = −5→4 |
| Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −34→35 |
| Tmin = 0.58, Tmax = 0.98 | l = −7→7 |
| 5088 measured reflections |
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.049 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.102 | w = 1/[σ2(Fo2) + (0.0358P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 0.94 | (Δ/σ)max < 0.001 |
| 2353 reflections | Δρmax = 0.44 e Å−3 |
| 251 parameters | Δρmin = −0.29 e Å−3 |
| 1 restraint | Absolute structure: Flack x determined using 460 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.50 (12) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.8425 (4) | 0.50092 (5) | 0.4491 (3) | 0.0314 (5) | |
| Cl2 | 0.4721 (4) | 0.45202 (5) | 0.9346 (3) | 0.0304 (4) | |
| N3 | 0.3963 (13) | 0.2867 (2) | 0.0126 (10) | 0.0315 (15) | |
| O1 | 0.3220 (15) | 0.24711 (17) | −0.0179 (10) | 0.0579 (18) | |
| O2 | 0.5645 (12) | 0.30679 (18) | −0.0977 (9) | 0.0437 (15) | |
| N6 | 1.0347 (14) | 0.1643 (2) | 0.6032 (11) | 0.0345 (17) | |
| O3 | 1.2238 (12) | 0.14523 (19) | 0.5058 (10) | 0.0452 (15) | |
| O4 | 0.9319 (14) | 0.20114 (19) | 0.5553 (10) | 0.0528 (18) | |
| N1 | −0.0631 (16) | 0.3809 (2) | 0.6825 (11) | 0.0326 (16) | |
| H1A | 0.021 (16) | 0.405 (2) | 0.725 (12) | 0.04 (2)* | |
| H1B | −0.182 (17) | 0.363 (3) | 0.748 (14) | 0.05 (3)* | |
| N2 | 0.3191 (14) | 0.4262 (2) | 0.4200 (12) | 0.0296 (17) | |
| H2A | 0.428 (19) | 0.428 (3) | 0.508 (15) | 0.044* | |
| H2B | 0.174 (14) | 0.458 (2) | 0.461 (12) | 0.044* | |
| H2C | 0.435 (18) | 0.436 (2) | 0.336 (14) | 0.044* | |
| C1 | 0.0597 (15) | 0.3576 (2) | 0.5228 (13) | 0.0244 (17) | |
| C2 | 0.2439 (15) | 0.3784 (2) | 0.3848 (12) | 0.0230 (16) | |
| C3 | 0.3534 (14) | 0.3556 (2) | 0.2208 (12) | 0.0235 (17) | |
| H3 | 0.4796 | 0.3701 | 0.1303 | 0.028* | |
| C4 | 0.2770 (14) | 0.3110 (2) | 0.1892 (12) | 0.0251 (17) | |
| C5 | 0.0995 (16) | 0.2888 (2) | 0.3176 (12) | 0.0280 (17) | |
| H5 | 0.0506 | 0.2581 | 0.291 | 0.034* | |
| C6 | −0.0098 (16) | 0.3116 (2) | 0.4882 (13) | 0.0311 (19) | |
| H6 | −0.1301 | 0.2963 | 0.5804 | 0.037* | |
| N4 | 0.6182 (17) | 0.0721 (2) | 1.2972 (12) | 0.0339 (17) | |
| H4A | 0.728 (15) | 0.049 (2) | 1.367 (12) | 0.04 (2)* | |
| H4B | 0.538 (19) | 0.086 (3) | 1.364 (14) | 0.04 (3)* | |
| N5 | 1.0075 (15) | 0.0276 (2) | 1.0387 (11) | 0.0276 (16) | |
| H5A | 1.093 (18) | 0.018 (2) | 0.937 (13) | 0.041* | |
| H5B | 0.796 (16) | 0.007 (2) | 1.028 (11) | 0.041* | |
| H5C | 1.152 (16) | 0.025 (2) | 1.176 (14) | 0.041* | |
| C7 | 0.7333 (15) | 0.0956 (2) | 1.1374 (12) | 0.0241 (17) | |
| C8 | 0.9220 (15) | 0.0750 (2) | 1.0006 (12) | 0.0245 (17) | |
| C9 | 1.0259 (16) | 0.0970 (2) | 0.8319 (12) | 0.0271 (17) | |
| H9 | 1.1573 | 0.0825 | 0.7452 | 0.032* | |
| C10 | 0.9352 (16) | 0.1412 (2) | 0.7896 (12) | 0.0276 (16) | |
| C11 | 0.7525 (15) | 0.1635 (2) | 0.9185 (13) | 0.0300 (19) | |
| H11 | 0.6961 | 0.194 | 0.89 | 0.036* | |
| C12 | 0.6552 (15) | 0.1405 (2) | 1.0886 (12) | 0.0253 (17) | |
| H12 | 0.5294 | 0.1556 | 1.1772 | 0.03* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0422 (11) | 0.0317 (10) | 0.0222 (10) | −0.0059 (8) | 0.0111 (8) | −0.0012 (8) |
| Cl2 | 0.0399 (11) | 0.0302 (9) | 0.0231 (10) | −0.0051 (8) | 0.0111 (8) | −0.0013 (8) |
| N3 | 0.034 (4) | 0.037 (4) | 0.025 (4) | 0.005 (3) | 0.009 (3) | −0.002 (3) |
| O1 | 0.087 (5) | 0.029 (3) | 0.066 (5) | −0.002 (3) | 0.041 (4) | −0.015 (3) |
| O2 | 0.054 (4) | 0.050 (3) | 0.034 (4) | −0.002 (3) | 0.030 (3) | −0.002 (3) |
| N6 | 0.045 (4) | 0.035 (4) | 0.025 (4) | −0.009 (3) | 0.011 (3) | 0.000 (3) |
| O3 | 0.054 (4) | 0.054 (4) | 0.032 (3) | −0.001 (3) | 0.022 (3) | 0.005 (3) |
| O4 | 0.089 (5) | 0.029 (3) | 0.045 (5) | 0.004 (3) | 0.025 (4) | 0.017 (3) |
| N1 | 0.044 (4) | 0.032 (4) | 0.025 (4) | −0.012 (3) | 0.017 (3) | −0.005 (3) |
| N2 | 0.038 (4) | 0.029 (4) | 0.023 (4) | −0.006 (3) | 0.008 (3) | 0.001 (3) |
| C1 | 0.023 (4) | 0.027 (4) | 0.023 (5) | 0.000 (3) | 0.004 (3) | −0.003 (3) |
| C2 | 0.027 (4) | 0.022 (4) | 0.021 (4) | 0.000 (3) | 0.005 (3) | 0.004 (3) |
| C3 | 0.021 (4) | 0.029 (4) | 0.022 (5) | 0.000 (3) | 0.009 (3) | 0.001 (3) |
| C4 | 0.024 (4) | 0.026 (4) | 0.026 (5) | 0.006 (3) | 0.007 (3) | −0.003 (3) |
| C5 | 0.036 (4) | 0.024 (3) | 0.024 (5) | −0.005 (3) | 0.005 (3) | 0.000 (3) |
| C6 | 0.039 (5) | 0.031 (4) | 0.025 (5) | −0.004 (3) | 0.010 (4) | 0.003 (3) |
| N4 | 0.047 (5) | 0.032 (4) | 0.026 (4) | 0.007 (4) | 0.018 (4) | 0.004 (3) |
| N5 | 0.035 (4) | 0.027 (4) | 0.022 (4) | 0.011 (3) | 0.011 (3) | 0.000 (3) |
| C7 | 0.027 (4) | 0.030 (4) | 0.017 (4) | −0.006 (3) | 0.008 (3) | −0.003 (3) |
| C8 | 0.028 (4) | 0.026 (4) | 0.019 (4) | 0.004 (3) | 0.001 (3) | 0.003 (3) |
| C9 | 0.033 (4) | 0.029 (4) | 0.022 (5) | 0.000 (3) | 0.013 (4) | −0.006 (3) |
| C10 | 0.036 (4) | 0.029 (4) | 0.020 (4) | −0.004 (3) | 0.011 (3) | 0.002 (3) |
| C11 | 0.034 (4) | 0.020 (3) | 0.038 (5) | 0.002 (3) | 0.013 (4) | 0.002 (3) |
| C12 | 0.025 (4) | 0.029 (4) | 0.024 (4) | 0.007 (3) | 0.009 (3) | −0.010 (3) |
| N3—O1 | 1.232 (8) | C5—C6 | 1.395 (10) |
| N3—O2 | 1.235 (8) | C5—H5 | 0.95 |
| N3—C4 | 1.467 (9) | C6—H6 | 0.95 |
| N6—O4 | 1.210 (8) | N4—C7 | 1.366 (9) |
| N6—O3 | 1.240 (8) | N4—H4A | 0.91 (7) |
| N6—C10 | 1.460 (9) | N4—H4B | 0.72 (8) |
| N1—C1 | 1.379 (9) | N5—C8 | 1.473 (9) |
| N1—H1A | 0.84 (7) | N5—H5A | 0.83 (8) |
| N1—H1B | 0.89 (8) | N5—H5B | 1.12 (7) |
| N2—C2 | 1.471 (9) | N5—H5C | 1.00 (8) |
| N2—H2A | 0.68 (8) | C7—C12 | 1.403 (9) |
| N2—H2B | 1.19 (7) | C7—C8 | 1.412 (9) |
| N2—H2C | 0.83 (9) | C8—C9 | 1.364 (10) |
| C1—C2 | 1.407 (9) | C9—C10 | 1.390 (9) |
| C1—C6 | 1.411 (9) | C9—H9 | 0.95 |
| C2—C3 | 1.364 (9) | C10—C11 | 1.385 (10) |
| C3—C4 | 1.378 (8) | C11—C12 | 1.373 (10) |
| C3—H3 | 0.95 | C11—H11 | 0.95 |
| C4—C5 | 1.364 (10) | C12—H12 | 0.95 |
| O1—N3—O2 | 123.4 (7) | C5—C6—C1 | 119.5 (7) |
| O1—N3—C4 | 117.8 (6) | C5—C6—H6 | 120.3 |
| O2—N3—C4 | 118.8 (6) | C1—C6—H6 | 120.3 |
| O4—N6—O3 | 123.9 (7) | C7—N4—H4A | 119 (5) |
| O4—N6—C10 | 118.2 (7) | C7—N4—H4B | 112 (7) |
| O3—N6—C10 | 117.9 (7) | H4A—N4—H4B | 117 (9) |
| C1—N1—H1A | 117 (5) | C8—N5—H5A | 111 (5) |
| C1—N1—H1B | 110 (5) | C8—N5—H5B | 108 (3) |
| H1A—N1—H1B | 130 (8) | H5A—N5—H5B | 104 (6) |
| C2—N2—H2A | 109 (8) | C8—N5—H5C | 110 (4) |
| C2—N2—H2B | 132 (3) | H5A—N5—H5C | 107 (7) |
| H2A—N2—H2B | 96 (8) | H5B—N5—H5C | 117 (5) |
| C2—N2—H2C | 113 (5) | N4—C7—C12 | 122.4 (7) |
| H2A—N2—H2C | 92 (9) | N4—C7—C8 | 121.6 (7) |
| H2B—N2—H2C | 106 (6) | C12—C7—C8 | 115.9 (6) |
| N1—C1—C2 | 122.2 (6) | C9—C8—C7 | 122.8 (6) |
| N1—C1—C6 | 119.7 (7) | C9—C8—N5 | 118.3 (6) |
| C2—C1—C6 | 118.0 (7) | C7—C8—N5 | 118.9 (6) |
| C3—C2—C1 | 121.9 (6) | C8—C9—C10 | 118.5 (7) |
| C3—C2—N2 | 119.6 (6) | C8—C9—H9 | 120.8 |
| C1—C2—N2 | 118.5 (7) | C10—C9—H9 | 120.8 |
| C2—C3—C4 | 118.5 (7) | C11—C10—C9 | 121.7 (7) |
| C2—C3—H3 | 120.7 | C11—C10—N6 | 119.6 (6) |
| C4—C3—H3 | 120.7 | C9—C10—N6 | 118.7 (7) |
| C5—C4—C3 | 122.4 (7) | C12—C11—C10 | 118.2 (6) |
| C5—C4—N3 | 119.6 (6) | C12—C11—H11 | 120.9 |
| C3—C4—N3 | 118.1 (7) | C10—C11—H11 | 120.9 |
| C4—C5—C6 | 119.7 (7) | C11—C12—C7 | 123.0 (7) |
| C4—C5—H5 | 120.2 | C11—C12—H12 | 118.5 |
| C6—C5—H5 | 120.2 | C7—C12—H12 | 118.5 |
| N1—C1—C2—C3 | −177.0 (6) | N4—C7—C8—C9 | 176.2 (7) |
| C6—C1—C2—C3 | 0.3 (10) | C12—C7—C8—C9 | 0.5 (10) |
| N1—C1—C2—N2 | 3.0 (10) | N4—C7—C8—N5 | −2.9 (10) |
| C6—C1—C2—N2 | −179.7 (6) | C12—C7—C8—N5 | −178.5 (6) |
| C1—C2—C3—C4 | 0.8 (10) | C7—C8—C9—C10 | −1.8 (11) |
| N2—C2—C3—C4 | −179.2 (6) | N5—C8—C9—C10 | 177.3 (6) |
| C2—C3—C4—C5 | −0.8 (10) | C8—C9—C10—C11 | 2.3 (11) |
| C2—C3—C4—N3 | −179.9 (6) | C8—C9—C10—N6 | −177.3 (6) |
| O1—N3—C4—C5 | 2.4 (10) | O4—N6—C10—C11 | −6.5 (10) |
| O2—N3—C4—C5 | −177.7 (7) | O3—N6—C10—C11 | 172.3 (6) |
| O1—N3—C4—C3 | −178.5 (6) | O4—N6—C10—C9 | 173.1 (7) |
| O2—N3—C4—C3 | 1.4 (9) | O3—N6—C10—C9 | −8.1 (10) |
| C3—C4—C5—C6 | −0.2 (11) | C9—C10—C11—C12 | −1.5 (11) |
| N3—C4—C5—C6 | 178.9 (6) | N6—C10—C11—C12 | 178.1 (6) |
| C4—C5—C6—C1 | 1.3 (11) | C10—C11—C12—C7 | 0.2 (11) |
| N1—C1—C6—C5 | 176.0 (7) | N4—C7—C12—C11 | −175.3 (7) |
| C2—C1—C6—C5 | −1.3 (10) | C8—C7—C12—C11 | 0.3 (10) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1A···Cl2 | 0.84 (7) | 2.64 (7) | 3.410 (7) | 152 (6) |
| N1—H1B···O2i | 0.89 (8) | 2.30 (8) | 3.176 (9) | 170 (7) |
| N2—H2A···Cl2 | 0.68 (8) | 2.70 (9) | 3.249 (7) | 139 (10) |
| N2—H2B···Cl1ii | 1.19 (7) | 1.95 (7) | 3.103 (7) | 161 (5) |
| N2—H2C···Cl1 | 0.83 (9) | 2.69 (7) | 3.217 (6) | 123 (7) |
| N2—H2C···Cl2iii | 0.83 (9) | 2.55 (9) | 3.254 (7) | 143 (7) |
| C3—H3···Cl2iii | 0.95 | 2.72 | 3.449 (7) | 134 |
| C5—H5···O4ii | 0.95 | 2.46 | 3.134 (9) | 128 |
| C6—H6···O2i | 0.95 | 2.58 | 3.390 (10) | 144 |
| N4—H4A···Cl1iv | 0.91 (7) | 2.54 (7) | 3.426 (8) | 164 (6) |
| N4—H4B···O3i | 0.72 (8) | 2.48 (8) | 3.182 (10) | 166 (9) |
| N5—H5A···Cl1v | 0.83 (8) | 2.49 (8) | 3.269 (6) | 157 (7) |
| N5—H5A···Cl2iv | 0.83 (8) | 2.80 (7) | 3.225 (6) | 114 (6) |
| N5—H5B···Cl2vi | 1.12 (7) | 2.06 (7) | 3.128 (7) | 157 (5) |
| N5—H5C···Cl1iv | 1.00 (8) | 2.42 (8) | 3.240 (7) | 139 (6) |
| N5—H5C···N4vii | 1.00 (8) | 2.54 (7) | 3.253 (10) | 128 (6) |
| Symmetry codes: (i) x−1, y, z+1; (ii) x−1, y, z; (iii) x, y, z−1; (iv) −x+2, y−1/2, −z+2; (v) −x+2, y−1/2, −z+1; (vi) −x+1, y−1/2, −z+2; (vii) x+1, y, z. |
| C6H8N3O2+·Br−·H2O | Dx = 1.791 Mg m−3 |
| Mr = 252.08 | Mo Kα radiation, λ = 0.71073 Å |
| Orthorhombic, Iba2 | Cell parameters from 3357 reflections |
| a = 14.352 (2) Å | θ = 2.8–24.6° |
| b = 20.086 (3) Å | µ = 4.38 mm−1 |
| c = 6.4851 (9) Å | T = 200 K |
| V = 1869.5 (5) Å3 | Plate, clear yellow |
| Z = 8 | 0.40 × 0.40 × 0.05 mm |
| F(000) = 1008 |
| Bruker SMART X2S benchtop diffractometer | 1695 independent reflections |
| Radiation source: sealed microfocus tube | 1387 reflections with I > 2σ(I) |
| Doubly curved silicon crystal monochromator | Rint = 0.069 |
| Detector resolution: 8.3330 pixels mm-1 | θmax = 25.3°, θmin = 2.8° |
| ω scans | h = −17→16 |
| Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −24→24 |
| Tmin = 0.48, Tmax = 0.81 | l = −7→7 |
| 8617 measured reflections |
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.030 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.071 | w = 1/[σ2(Fo2) + (0.0314P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 0.96 | (Δ/σ)max < 0.001 |
| 1695 reflections | Δρmax = 0.40 e Å−3 |
| 146 parameters | Δρmin = −0.34 e Å−3 |
| 1 restraint | Absolute structure: Flack x determined using 554 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.006 (13) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| x | y | z | Uiso*/Ueq | ||
| Br1 | 0.40567 (3) | 0.86365 (3) | 1.00289 (17) | 0.0284 (2) | |
| O1S | 0.1940 (4) | 0.8047 (3) | 0.9423 (9) | 0.0418 (16) | |
| H1SA | 0.240 (6) | 0.830 (4) | 0.969 (13) | 0.07 (3)* | |
| H1SB | 0.153 (5) | 0.827 (3) | 0.933 (10) | 0.02 (2)* | |
| N1 | 0.1130 (4) | 0.5386 (3) | 1.0132 (19) | 0.0363 (14) | |
| H1A | 0.069 (4) | 0.567 (3) | 0.973 (12) | 0.030 (19)* | |
| H1B | 0.105 (4) | 0.500 (4) | 1.002 (19) | 0.041 (19)* | |
| N2 | 0.1359 (4) | 0.6782 (3) | 1.0088 (19) | 0.0291 (12) | |
| H2A | 0.152 (4) | 0.721 (4) | 1.008 (19) | 0.05 (2)* | |
| H2B | 0.108 (6) | 0.671 (6) | 1.15 (2) | 0.09 (4)* | |
| H2C | 0.099 (5) | 0.675 (5) | 0.918 (14) | 0.04 (3)* | |
| N3 | 0.4682 (4) | 0.6423 (3) | 0.8891 (10) | 0.0387 (15) | |
| O1 | 0.4761 (3) | 0.7017 (3) | 0.8467 (10) | 0.0555 (16) | |
| O2 | 0.5364 (3) | 0.6047 (3) | 0.9039 (8) | 0.0497 (15) | |
| C1 | 0.1988 (4) | 0.5642 (3) | 0.9848 (15) | 0.0283 (15) | |
| C2 | 0.2146 (4) | 0.6330 (3) | 0.9782 (16) | 0.0242 (16) | |
| C3 | 0.3024 (5) | 0.6591 (4) | 0.9466 (9) | 0.0316 (19) | |
| H3 | 0.3118 | 0.7059 | 0.9422 | 0.038* | |
| C4 | 0.3762 (4) | 0.6159 (4) | 0.9216 (11) | 0.0293 (17) | |
| C5 | 0.3645 (5) | 0.5471 (4) | 0.9300 (11) | 0.038 (2) | |
| H5 | 0.4164 | 0.5181 | 0.9156 | 0.046* | |
| C6 | 0.2769 (4) | 0.5222 (4) | 0.9592 (10) | 0.036 (2) | |
| H6 | 0.2683 | 0.4753 | 0.9624 | 0.043* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Br1 | 0.0240 (3) | 0.0334 (3) | 0.0277 (3) | −0.0004 (3) | 0.0005 (5) | −0.0017 (6) |
| O1S | 0.028 (3) | 0.032 (3) | 0.065 (5) | −0.003 (3) | −0.002 (3) | 0.007 (3) |
| N1 | 0.034 (3) | 0.024 (3) | 0.051 (4) | −0.003 (2) | −0.005 (5) | 0.000 (6) |
| N2 | 0.029 (3) | 0.026 (3) | 0.033 (3) | −0.003 (2) | −0.008 (5) | −0.004 (5) |
| N3 | 0.030 (3) | 0.039 (4) | 0.047 (4) | −0.001 (3) | 0.003 (3) | −0.003 (3) |
| O1 | 0.030 (3) | 0.043 (4) | 0.093 (5) | −0.002 (3) | 0.003 (3) | −0.001 (3) |
| O2 | 0.026 (2) | 0.046 (3) | 0.078 (4) | 0.010 (3) | 0.003 (3) | −0.004 (3) |
| C1 | 0.032 (3) | 0.030 (3) | 0.022 (4) | 0.000 (2) | −0.005 (4) | 0.000 (4) |
| C2 | 0.023 (2) | 0.031 (3) | 0.019 (5) | 0.003 (2) | −0.002 (4) | 0.003 (3) |
| C3 | 0.034 (4) | 0.039 (4) | 0.022 (5) | 0.000 (3) | −0.004 (3) | −0.002 (3) |
| C4 | 0.019 (3) | 0.037 (4) | 0.032 (4) | 0.002 (3) | −0.001 (3) | −0.002 (3) |
| C5 | 0.031 (4) | 0.034 (4) | 0.049 (5) | 0.009 (3) | −0.006 (3) | −0.004 (3) |
| C6 | 0.036 (3) | 0.029 (4) | 0.042 (6) | 0.001 (3) | −0.007 (3) | 0.002 (3) |
| O1S—H1SA | 0.85 (8) | N3—C4 | 1.439 (9) |
| O1S—H1SB | 0.74 (7) | C1—C2 | 1.401 (8) |
| N1—C1 | 1.347 (8) | C1—C6 | 1.413 (8) |
| N1—H1A | 0.89 (6) | C2—C3 | 1.380 (9) |
| N1—H1B | 0.79 (7) | C3—C4 | 1.379 (9) |
| N2—C2 | 1.462 (8) | C3—H3 | 0.95 |
| N2—H2A | 0.89 (7) | C4—C5 | 1.393 (10) |
| N2—H2B | 1.03 (12) | C5—C6 | 1.366 (9) |
| N2—H2C | 0.80 (8) | C5—H5 | 0.95 |
| N3—O1 | 1.229 (7) | C6—H6 | 0.95 |
| N3—O2 | 1.239 (7) | ||
| H1SA—O1S—H1SB | 106 (8) | C3—C2—C1 | 121.8 (6) |
| C1—N1—H1A | 112 (4) | C3—C2—N2 | 119.3 (6) |
| C1—N1—H1B | 120 (5) | C1—C2—N2 | 118.9 (5) |
| H1A—N1—H1B | 120 (6) | C4—C3—C2 | 118.6 (7) |
| C2—N2—H2A | 113 (4) | C4—C3—H3 | 120.7 |
| C2—N2—H2B | 110 (6) | C2—C3—H3 | 120.7 |
| H2A—N2—H2B | 104 (10) | C3—C4—C5 | 121.8 (6) |
| C2—N2—H2C | 112 (7) | C3—C4—N3 | 119.4 (7) |
| H2A—N2—H2C | 104 (10) | C5—C4—N3 | 118.8 (6) |
| H2B—N2—H2C | 114 (7) | C6—C5—C4 | 118.6 (6) |
| O1—N3—O2 | 122.4 (6) | C6—C5—H5 | 120.7 |
| O1—N3—C4 | 118.3 (6) | C4—C5—H5 | 120.7 |
| O2—N3—C4 | 119.3 (6) | C5—C6—C1 | 121.9 (6) |
| N1—C1—C2 | 121.9 (6) | C5—C6—H6 | 119.1 |
| N1—C1—C6 | 120.9 (6) | C1—C6—H6 | 119.1 |
| C2—C1—C6 | 117.2 (6) | ||
| N1—C1—C2—C3 | −179.2 (9) | O2—N3—C4—C3 | 167.0 (7) |
| C6—C1—C2—C3 | 0.5 (15) | O1—N3—C4—C5 | 167.7 (7) |
| N1—C1—C2—N2 | 1.7 (17) | O2—N3—C4—C5 | −12.0 (10) |
| C6—C1—C2—N2 | −178.6 (9) | C3—C4—C5—C6 | 1.5 (11) |
| C1—C2—C3—C4 | −0.2 (14) | N3—C4—C5—C6 | −179.5 (6) |
| N2—C2—C3—C4 | 178.9 (9) | C4—C5—C6—C1 | −1.2 (11) |
| C2—C3—C4—C5 | −0.8 (11) | N1—C1—C6—C5 | 179.9 (8) |
| C2—C3—C4—N3 | −179.8 (7) | C2—C1—C6—C5 | 0.2 (14) |
| O1—N3—C4—C3 | −13.3 (10) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1S—H1SA···Br1 | 0.85 (8) | 2.48 (8) | 3.284 (6) | 158 (7) |
| O1S—H1SB···O2i | 0.74 (7) | 2.17 (7) | 2.914 (8) | 178 (7) |
| N1—H1A···Br1i | 0.89 (6) | 2.73 (6) | 3.565 (6) | 156 (6) |
| N1—H1B···Br1ii | 0.79 (7) | 2.74 (7) | 3.524 (6) | 173 (10) |
| N2—H2A···O1S | 0.89 (7) | 1.83 (8) | 2.708 (7) | 166 (12) |
| N2—H2B···Br1iii | 1.03 (12) | 2.38 (13) | 3.366 (12) | 160 (7) |
| N2—H2C···Br1iv | 0.80 (8) | 2.80 (9) | 3.439 (12) | 138 (7) |
| N2—H2C···Br1i | 0.80 (8) | 2.93 (8) | 3.410 (6) | 121 (7) |
| Symmetry codes: (i) x−1/2, −y+3/2, z; (ii) −x+1/2, y−1/2, z; (iii) −x+1/2, −y+3/2, z+1/2; (iv) −x+1/2, −y+3/2, z−1/2. |
| C—NO2 (Å) | C—Np (Å) | C—No (Å) | C—Nm (Å) | N—O (Å) | N···N (Å) | O—N—C—C (°) | |
| (I) | 1.433 (3) | 1.356 (3) | 1.415 (3) | 1.241 (2), 1.243 (2) | 2.813 (3) | -0.3 (3) | |
| (I) DFTi | 1.464 | 1.389 | 1.404 | 1.228, 1.229 | 2.739 | 1.6 | |
| (I) MP2ii | 1.463 | 1.402 | 1.404 | 1.244, 1.244 | 2.700 | 1.6 | |
| (IIa) | 1.467 (9) | 1.378 (9) | 1.471 (9) | 1.232 (8), 1.235 (8) | 2.848 (10) | 2.4 (10) | |
| (IIb) | 1.460 (9) | 1.366 (9) | 1.472 (9) | 1.210 (8), 1.240 (8) | 2.843 (10) | -6.5 (10) | |
| (II) DFTi | 1.492 | 1.437 | 1.479 | 1.216, 1.221 | 2.643 | 0.2 | |
| (III) | 1.440 (9) | 1.347 (8) | 1.462 (8) | 1.229 (7), 1.239 (7) | 2.824 (8) | -12.0 (10) | |
| (IV)iii | 1.4313 (15) | 1.3642 (15) | 1.4142 (16) | 1.2420 (16), 1.2318 (15) | 2.725 | -3.8 | |
| (IV) DFTi | 1.458 | 1.371 | 1.41 | 1.225, 1.240 | 2.696 | 3.3 |
| Notes: (i) energy-minimized DFT-level calculations were performed with B3LYP/6-331++G**; (ii) energy-minimized Møller-Plesset level calculations were performed with MP2/6-31G**; (iii) structure previously reported (Betz & Gerber, 2011). |

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