Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270108010019/sq3139sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270108010019/sq3139Isup2.hkl |
CCDC reference: 690202
For related literature, see: Deecher et al. (2006); Desiraju & Steiner (1999); DeVita Dufort et al. (2007); Hadfield et al. (2004); Hibbert & Emsley (1990); Vishweshwar et al. (2004).
The title compound was synthesized and purified in our laboratory by following Dr Reddy's Laboratories' (proprietary) process. Diffraction quality single crystals of (I) were obtained by slow evaporation from an isopropyl alcohol solution under ambient conditions.
H atoms bound to C atoms were positioned geometrically [C—H = 0.95 Å and Uiso(H) = 1.2Ueq(C)] and refined using a riding model. The positions of H atoms bound to N and O atoms were refined [Uiso(H) = 1.5Ueq(N,O) {please check; values in CIF do not agree with this}].
Data collection: CrystalClear (Rigaku, 1999); cell refinement: CrystalClear (Rigaku, 1999); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), X-SEED (Barbour, 2001) and Mercury (Macrae et al., 2006; software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2004).
C16H26NO2+·C4H5O4−·H2O | Z = 2 |
Mr = 399.48 | F(000) = 432.00 |
Triclinic, P1 | Dx = 1.270 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71070 Å |
a = 6.542 (5) Å | Cell parameters from 3898 reflections |
b = 9.324 (8) Å | θ = 1.2–28.7° |
c = 17.631 (14) Å | µ = 0.10 mm−1 |
α = 77.594 (17)° | T = 298 K |
β = 84.00 (2)° | Block, colorless |
γ = 89.39 (2)° | 0.50 × 0.30 × 0.12 mm |
V = 1044.5 (15) Å3 |
Rigaku Mercury diffractometer | 2265 reflections with F2 > 2σ(F2) |
Detector resolution: 7.31 pixels mm-1 | Rint = 0.045 |
ω scans | θmax = 29.3° |
Absorption correction: multi-scan (Jacobson, 1998) | h = −8→6 |
Tmin = 0.964, Tmax = 0.989 | k = −12→12 |
11016 measured reflections | l = −22→22 |
3995 independent reflections |
Refinement on F2 | Chebychev polynomial with 3 parameters: 4182.1300 5759.2800 1682.9900 [Carruthers, J. R. & Watkin, D. J. (1979). Acta Cryst. A35, 698–699] |
R[F2 > 2σ(F2)] = 0.065 | (Δ/σ)max < 0.001 |
wR(F2) = 0.101 | Δρmax = 0.36 e Å−3 |
S = 1.25 | Δρmin = −0.34 e Å−3 |
3875 reflections | Extinction correction: Larson, A. C. (1970). Crystallographic Computing, edited by F. R. Ahmed, p. 291-294. Munksgaard: Copenhagen. |
299 parameters | Extinction coefficient: 410 (24) |
H atoms treated by a mixture of independent and constrained refinement |
C16H26NO2+·C4H5O4−·H2O | γ = 89.39 (2)° |
Mr = 399.48 | V = 1044.5 (15) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.542 (5) Å | Mo Kα radiation |
b = 9.324 (8) Å | µ = 0.10 mm−1 |
c = 17.631 (14) Å | T = 298 K |
α = 77.594 (17)° | 0.50 × 0.30 × 0.12 mm |
β = 84.00 (2)° |
Rigaku Mercury diffractometer | 3995 independent reflections |
Absorption correction: multi-scan (Jacobson, 1998) | 2265 reflections with F2 > 2σ(F2) |
Tmin = 0.964, Tmax = 0.989 | Rint = 0.045 |
11016 measured reflections |
R[F2 > 2σ(F2)] = 0.065 | 299 parameters |
wR(F2) = 0.101 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.25 | Δρmax = 0.36 e Å−3 |
3875 reflections | Δρmin = −0.34 e Å−3 |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement was performed using reflections with F2 > 0.5 σ(F2). The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
O1 | 0.3698 (3) | 0.8465 (2) | 0.18421 (13) | 0.0558 (7) | |
O2 | 0.0718 (3) | 0.04218 (18) | 0.16404 (11) | 0.0443 (6) | |
N1 | 0.2141 (3) | 0.1799 (2) | 0.36417 (13) | 0.0483 (8) | |
C1 | 0.1866 (4) | 0.4083 (2) | 0.21436 (14) | 0.0374 (8) | |
C2 | 0.0427 (4) | 0.5173 (2) | 0.21364 (15) | 0.0416 (8) | |
C3 | 0.0986 (4) | 0.6638 (2) | 0.20413 (15) | 0.0424 (8) | |
C4 | 0.3048 (4) | 0.7023 (2) | 0.19388 (15) | 0.0422 (8) | |
C5 | 0.4512 (4) | 0.5960 (2) | 0.19441 (16) | 0.0467 (9) | |
C6 | 0.3923 (4) | 0.4499 (2) | 0.20530 (15) | 0.0446 (9) | |
C7 | 0.1178 (4) | 0.2495 (2) | 0.22566 (15) | 0.0412 (8) | |
C8 | 0.1227 (3) | 0.1966 (2) | 0.14596 (15) | 0.0374 (8) | |
C9 | 0.3308 (4) | 0.2116 (3) | 0.09773 (15) | 0.0447 (9) | |
C10 | 0.3262 (4) | 0.1621 (3) | 0.02144 (17) | 0.0584 (11) | |
C11 | 0.1667 (5) | 0.2455 (4) | −0.02677 (18) | 0.0714 (11) | |
C12 | −0.0456 (5) | 0.2316 (3) | 0.01962 (18) | 0.0653 (12) | |
C13 | −0.0377 (4) | 0.2802 (2) | 0.09704 (16) | 0.0495 (9) | |
C14 | 0.2282 (4) | 0.1421 (2) | 0.28475 (15) | 0.0458 (9) | |
C15 | 0.3259 (5) | 0.0671 (3) | 0.41607 (18) | 0.0654 (11) | |
C16 | 0.0015 (5) | 0.1928 (3) | 0.39983 (18) | 0.0619 (11) | |
O3 | 0.2483 (3) | 0.4888 (2) | 0.39876 (12) | 0.0591 (8) | |
O4 | 0.5369 (3) | 0.3750 (2) | 0.37900 (14) | 0.0642 (8) | |
O5 | 1.1001 (3) | 0.7299 (2) | 0.40258 (14) | 0.0662 (8) | |
O6 | 0.8204 (3) | 0.8619 (2) | 0.38551 (14) | 0.0655 (8) | |
C17 | 0.4458 (4) | 0.4846 (3) | 0.39106 (16) | 0.0458 (9) | |
C18 | 0.5596 (4) | 0.6220 (2) | 0.39617 (18) | 0.0493 (9) | |
C19 | 0.7874 (3) | 0.6023 (2) | 0.39817 (16) | 0.0445 (8) | |
C20 | 0.9061 (4) | 0.7418 (3) | 0.39506 (17) | 0.0478 (10) | |
O7 | 0.6943 (3) | 0.9781 (2) | 0.24101 (16) | 0.0718 (10) | |
H1 | 0.265 (4) | 0.916 (3) | 0.1776 (16) | 0.0658* | |
H2 | −0.09900 | 0.49100 | 0.22020 | 0.0510* | |
H3 | −0.00320 | 0.73720 | 0.20430 | 0.0520* | |
H5 | 0.59260 | 0.62310 | 0.18770 | 0.0560* | |
H6 | 0.49460 | 0.37650 | 0.20660 | 0.0540* | |
H7 | −0.02240 | 0.24520 | 0.24660 | 0.0500* | |
H11 | 0.282 (4) | 0.270 (3) | 0.3644 (16) | 0.0604* | |
H21 | −0.056 (4) | 0.028 (2) | 0.1848 (15) | 0.0479* | |
H91 | 0.37260 | 0.31190 | 0.08550 | 0.0540* | |
H92 | 0.42760 | 0.15480 | 0.12760 | 0.0540* | |
H101 | 0.45800 | 0.17500 | −0.00760 | 0.0700* | |
H102 | 0.28900 | 0.06090 | 0.03360 | 0.0700* | |
H111 | 0.20620 | 0.34620 | −0.04070 | 0.0870* | |
H112 | 0.16100 | 0.20860 | −0.07270 | 0.0870* | |
H121 | −0.08820 | 0.13160 | 0.03100 | 0.0810* | |
H122 | −0.14130 | 0.28970 | −0.01030 | 0.0810* | |
H131 | −0.16870 | 0.26440 | 0.12650 | 0.0600* | |
H132 | −0.00420 | 0.38200 | 0.08530 | 0.0600* | |
H141 | 0.36890 | 0.14260 | 0.26490 | 0.0560* | |
H142 | 0.17140 | 0.04650 | 0.29060 | 0.0550* | |
H151 | 0.23340 | −0.01030 | 0.44150 | 0.0790* | |
H152 | 0.38140 | 0.10940 | 0.45410 | 0.0790* | |
H153 | 0.43420 | 0.02950 | 0.38600 | 0.0790* | |
H161 | −0.04150 | 0.29150 | 0.38450 | 0.0760* | |
H162 | −0.00220 | 0.16690 | 0.45510 | 0.0760* | |
H163 | −0.08800 | 0.12950 | 0.38280 | 0.0760* | |
H31 | 0.172 (5) | 0.603 (4) | 0.400 (2) | 0.0979* | |
H181 | 0.50590 | 0.65310 | 0.44210 | 0.0600* | |
H182 | 0.53930 | 0.69650 | 0.35160 | 0.0600* | |
H191 | 0.80860 | 0.53510 | 0.44540 | 0.0540* | |
H192 | 0.83820 | 0.56170 | 0.35500 | 0.0540* | |
H71 | 0.735 (6) | 0.958 (4) | 0.292 (2) | 0.1089* | |
H72 | 0.638 (5) | 0.918 (4) | 0.225 (2) | 0.0796* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0507 (12) | 0.0283 (9) | 0.0887 (15) | −0.0013 (8) | −0.0156 (10) | −0.0091 (9) |
O2 | 0.0476 (10) | 0.0280 (8) | 0.0590 (12) | −0.0020 (8) | −0.0055 (9) | −0.0129 (8) |
N1 | 0.0640 (15) | 0.0383 (12) | 0.0442 (13) | −0.0139 (11) | −0.0043 (11) | −0.0124 (10) |
C1 | 0.0466 (15) | 0.0294 (12) | 0.0381 (13) | 0.0007 (10) | −0.0075 (11) | −0.0099 (10) |
C2 | 0.0416 (14) | 0.0313 (12) | 0.0541 (16) | −0.0015 (11) | −0.0113 (12) | −0.0108 (11) |
C3 | 0.0434 (15) | 0.0304 (12) | 0.0556 (16) | 0.0072 (11) | −0.0110 (12) | −0.0116 (11) |
C4 | 0.0526 (16) | 0.0249 (12) | 0.0494 (15) | −0.0002 (11) | −0.0094 (12) | −0.0064 (10) |
C5 | 0.0391 (15) | 0.0368 (14) | 0.0643 (18) | 0.0027 (11) | −0.0069 (12) | −0.0108 (12) |
C6 | 0.0500 (16) | 0.0289 (12) | 0.0564 (17) | 0.0083 (11) | −0.0081 (13) | −0.0114 (11) |
C7 | 0.0504 (16) | 0.0273 (12) | 0.0465 (15) | 0.0000 (11) | −0.0032 (12) | −0.0103 (10) |
C8 | 0.0422 (14) | 0.0241 (11) | 0.0469 (14) | 0.0018 (10) | −0.0083 (11) | −0.0080 (10) |
C9 | 0.0429 (15) | 0.0438 (15) | 0.0481 (15) | 0.0025 (11) | −0.0018 (12) | −0.0129 (12) |
C10 | 0.062 (2) | 0.0628 (19) | 0.0514 (18) | 0.0045 (15) | 0.0032 (14) | −0.0192 (14) |
C11 | 0.093 (2) | 0.077 (2) | 0.0484 (18) | 0.011 (2) | −0.0175 (18) | −0.0182 (16) |
C12 | 0.071 (2) | 0.065 (2) | 0.066 (2) | 0.0111 (17) | −0.0308 (17) | −0.0170 (16) |
C13 | 0.0532 (17) | 0.0400 (15) | 0.0570 (17) | 0.0069 (12) | −0.0135 (13) | −0.0107 (12) |
C14 | 0.0564 (17) | 0.0340 (13) | 0.0487 (15) | −0.0016 (12) | −0.0077 (13) | −0.0118 (11) |
C15 | 0.086 (2) | 0.0531 (18) | 0.0587 (19) | −0.0045 (17) | −0.0212 (17) | −0.0085 (15) |
C16 | 0.070 (2) | 0.0548 (18) | 0.065 (2) | −0.0037 (15) | −0.0028 (16) | −0.0238 (15) |
O3 | 0.0453 (12) | 0.0586 (13) | 0.0761 (15) | −0.0156 (9) | −0.0085 (10) | −0.0184 (11) |
O4 | 0.0614 (13) | 0.0407 (11) | 0.0961 (17) | −0.0066 (10) | −0.0211 (11) | −0.0204 (11) |
O5 | 0.0439 (12) | 0.0608 (13) | 0.1017 (18) | −0.0105 (10) | −0.0107 (11) | −0.0330 (12) |
O6 | 0.0616 (13) | 0.0435 (12) | 0.0986 (17) | −0.0073 (10) | −0.0204 (12) | −0.0250 (11) |
C17 | 0.0504 (17) | 0.0394 (14) | 0.0483 (16) | −0.0081 (12) | −0.0122 (12) | −0.0069 (12) |
C18 | 0.0446 (15) | 0.0401 (14) | 0.0663 (19) | −0.0092 (12) | −0.0084 (13) | −0.0165 (13) |
C19 | 0.0413 (14) | 0.0423 (14) | 0.0515 (16) | −0.0067 (11) | −0.0007 (12) | −0.0150 (12) |
C20 | 0.0495 (17) | 0.0439 (16) | 0.0543 (17) | −0.0096 (13) | −0.0056 (13) | −0.0194 (12) |
O7 | 0.0540 (14) | 0.0689 (16) | 0.0901 (19) | −0.0141 (11) | −0.0125 (12) | −0.0088 (13) |
O1—C4 | 1.384 (3) | C2—H2 | 0.9500 |
O2—C8 | 1.441 (3) | C3—H3 | 0.9500 |
O1—H1 | 0.94 (3) | C5—H5 | 0.9500 |
O2—H21 | 0.88 (3) | C6—H6 | 0.9500 |
O3—C17 | 1.286 (3) | C7—H7 | 0.9500 |
O4—C17 | 1.224 (4) | C9—H92 | 0.9500 |
O5—C20 | 1.291 (3) | C9—H91 | 0.9500 |
O6—C20 | 1.234 (4) | C10—H101 | 0.9500 |
O3—H31 | 1.18 (4) | C10—H102 | 0.9500 |
O5—H31i | 1.28 (4) | C11—H112 | 0.9500 |
O7—H71 | 0.94 (4) | C11—H111 | 0.9500 |
O7—H72 | 0.79 (4) | C12—H122 | 0.9500 |
N1—C16 | 1.480 (4) | C12—H121 | 0.9500 |
N1—C14 | 1.509 (4) | C13—H132 | 0.9500 |
N1—C15 | 1.479 (4) | C13—H131 | 0.9500 |
N1—H11 | 0.96 (3) | C14—H142 | 0.9500 |
C1—C6 | 1.388 (4) | C14—H141 | 0.9500 |
C1—C2 | 1.377 (3) | C15—H153 | 0.9500 |
C1—C7 | 1.518 (3) | C15—H152 | 0.9500 |
C2—C3 | 1.388 (3) | C15—H151 | 0.9500 |
C3—C4 | 1.383 (4) | C16—H161 | 0.9500 |
C4—C5 | 1.370 (3) | C16—H162 | 0.9500 |
C5—C6 | 1.387 (3) | C16—H163 | 0.9500 |
C7—C14 | 1.518 (4) | C17—C18 | 1.513 (4) |
C7—C8 | 1.583 (4) | C18—C19 | 1.503 (4) |
C8—C13 | 1.528 (4) | C19—C20 | 1.510 (4) |
C8—C9 | 1.519 (4) | C18—H181 | 0.9500 |
C9—C10 | 1.516 (4) | C18—H182 | 0.9500 |
C10—C11 | 1.517 (5) | C19—H192 | 0.9500 |
C11—C12 | 1.528 (5) | C19—H191 | 0.9500 |
C12—C13 | 1.534 (4) | ||
C4—O1—H1 | 114.7 (17) | C9—C10—H101 | 110.00 |
C8—O2—H21 | 110.2 (13) | C9—C10—H102 | 108.00 |
C17—O3—H31 | 117.4 (17) | H101—C10—H102 | 109.00 |
C20—O5—H31i | 114.1 (15) | C10—C11—H112 | 110.00 |
H71—O7—H72 | 121 (3) | H111—C11—H112 | 110.00 |
C15—N1—C16 | 110.2 (2) | C10—C11—H111 | 108.00 |
C14—N1—C16 | 114.3 (2) | C12—C11—H112 | 109.00 |
C14—N1—C15 | 108.22 (19) | C12—C11—H111 | 109.00 |
C15—N1—H11 | 104.2 (16) | C11—C12—H121 | 109.00 |
C14—N1—H11 | 113.7 (17) | C13—C12—H122 | 110.00 |
C16—N1—H11 | 105.8 (16) | C13—C12—H121 | 108.00 |
C2—C1—C7 | 120.0 (2) | H121—C12—H122 | 109.00 |
C6—C1—C7 | 122.5 (2) | C11—C12—H122 | 110.00 |
C2—C1—C6 | 117.48 (19) | C12—C13—H131 | 109.00 |
C1—C2—C3 | 122.0 (2) | C12—C13—H132 | 108.00 |
C2—C3—C4 | 119.3 (2) | C8—C13—H132 | 109.00 |
O1—C4—C3 | 121.9 (2) | C8—C13—H131 | 109.00 |
C3—C4—C5 | 120.0 (2) | H131—C13—H132 | 109.00 |
O1—C4—C5 | 118.2 (2) | C7—C14—H141 | 108.00 |
C4—C5—C6 | 119.9 (2) | N1—C14—H142 | 108.00 |
C1—C6—C5 | 121.4 (2) | H141—C14—H142 | 109.00 |
C8—C7—C14 | 111.01 (17) | N1—C14—H141 | 109.00 |
C1—C7—C14 | 114.4 (2) | C7—C14—H142 | 109.00 |
C1—C7—C8 | 112.78 (19) | N1—C15—H151 | 109.00 |
O2—C8—C7 | 107.97 (19) | H151—C15—H153 | 110.00 |
O2—C8—C9 | 105.90 (18) | N1—C15—H153 | 110.00 |
C7—C8—C13 | 109.48 (18) | H151—C15—H152 | 109.00 |
O2—C8—C13 | 109.06 (17) | N1—C15—H152 | 110.00 |
C9—C8—C13 | 109.5 (2) | H152—C15—H153 | 109.00 |
C7—C8—C9 | 114.77 (19) | N1—C16—H163 | 110.00 |
C8—C9—C10 | 112.7 (2) | H161—C16—H162 | 109.00 |
C9—C10—C11 | 111.2 (2) | H162—C16—H163 | 109.00 |
C10—C11—C12 | 111.2 (3) | N1—C16—H162 | 110.00 |
C11—C12—C13 | 110.7 (3) | N1—C16—H161 | 109.00 |
C8—C13—C12 | 112.4 (2) | H161—C16—H163 | 109.00 |
N1—C14—C7 | 113.58 (18) | O3—C17—O4 | 121.4 (3) |
C1—C2—H2 | 119.00 | O4—C17—C18 | 121.7 (2) |
C3—C2—H2 | 119.00 | O3—C17—C18 | 116.9 (2) |
C4—C3—H3 | 120.00 | C17—C18—C19 | 113.85 (19) |
C2—C3—H3 | 121.00 | C18—C19—C20 | 114.53 (18) |
C4—C5—H5 | 120.00 | O6—C20—C19 | 121.1 (2) |
C6—C5—H5 | 121.00 | O5—C20—C19 | 117.3 (2) |
C1—C6—H6 | 119.00 | O5—C20—O6 | 121.7 (3) |
C5—C6—H6 | 120.00 | C17—C18—H182 | 109.00 |
C14—C7—H7 | 106.00 | C19—C18—H181 | 108.00 |
C1—C7—H7 | 106.00 | C17—C18—H181 | 109.00 |
C8—C7—H7 | 106.00 | H181—C18—H182 | 110.00 |
C10—C9—H92 | 109.00 | C19—C18—H182 | 107.00 |
C8—C9—H92 | 109.00 | C18—C19—H191 | 108.00 |
C10—C9—H91 | 108.00 | C18—C19—H192 | 108.00 |
C8—C9—H91 | 109.00 | C20—C19—H192 | 109.00 |
H91—C9—H92 | 109.00 | H191—C19—H192 | 109.00 |
C11—C10—H101 | 110.00 | C20—C19—H191 | 108.00 |
C11—C10—H102 | 108.00 | ||
C15—N1—C14—C7 | 179.6 (2) | C14—C7—C8—C9 | −72.5 (3) |
C16—N1—C14—C7 | 56.5 (3) | C14—C7—C8—C13 | 164.0 (2) |
C6—C1—C2—C3 | 0.1 (4) | C1—C7—C14—N1 | 55.7 (3) |
C7—C1—C2—C3 | 179.5 (2) | C8—C7—C14—N1 | −175.30 (18) |
C2—C1—C6—C5 | −1.2 (4) | O2—C8—C9—C10 | 62.1 (3) |
C7—C1—C6—C5 | 179.5 (2) | C7—C8—C9—C10 | −179.0 (2) |
C2—C1—C7—C8 | 98.4 (3) | C13—C8—C9—C10 | −55.4 (3) |
C2—C1—C7—C14 | −133.5 (2) | O2—C8—C13—C12 | −60.6 (3) |
C6—C1—C7—C8 | −82.3 (3) | C7—C8—C13—C12 | −178.5 (2) |
C6—C1—C7—C14 | 45.8 (3) | C9—C8—C13—C12 | 54.9 (3) |
C1—C2—C3—C4 | 1.0 (4) | C8—C9—C10—C11 | 56.5 (3) |
C2—C3—C4—O1 | −179.9 (2) | C9—C10—C11—C12 | −55.4 (3) |
C2—C3—C4—C5 | −1.0 (4) | C10—C11—C12—C13 | 54.8 (3) |
O1—C4—C5—C6 | 178.9 (2) | C11—C12—C13—C8 | −55.3 (3) |
C3—C4—C5—C6 | −0.1 (4) | O3—C17—C18—C19 | 171.7 (2) |
C4—C5—C6—C1 | 1.2 (4) | O4—C17—C18—C19 | −9.3 (4) |
C1—C7—C8—O2 | 175.20 (19) | C17—C18—C19—C20 | 174.1 (2) |
C1—C7—C8—C9 | 57.4 (3) | C18—C19—C20—O5 | 174.9 (3) |
C1—C7—C8—C13 | −66.2 (3) | C18—C19—C20—O6 | −5.3 (4) |
C14—C7—C8—O2 | 45.4 (2) |
Symmetry code: (i) x+1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2ii | 0.94 (3) | 1.72 (3) | 2.655 (4) | 179 (3) |
O2—H21···O7iii | 0.88 (3) | 1.83 (3) | 2.698 (4) | 171 (2) |
O7—H72···O1 | 0.79 (4) | 2.13 (3) | 2.836 (4) | 149 (3) |
O3—H31···O5iv | 1.18 (4) | 1.28 (4) | 2.450 (3) | 176 (3) |
N1—H11···O3 | 0.96 (3) | 2.25 (3) | 3.085 (4) | 145 (2) |
N1—H11···O4 | 0.96 (3) | 2.01 (3) | 2.870 (4) | 149 (2) |
O7—H71···O6 | 0.94 (4) | 1.84 (4) | 2.753 (4) | 162 (3) |
C10—H102···O2 | 0.95 | 2.55 | 2.881 (4) | 101 |
C14—H142···O2 | 0.95 | 2.40 | 2.788 (4) | 104 |
C16—H163···O6iii | 0.95 | 2.56 | 3.386 (5) | 145 |
C14—H141···O7v | 0.95 | 2.66 | 3.485 (4) | 145 |
Symmetry codes: (ii) x, y+1, z; (iii) x−1, y−1, z; (iv) x−1, y, z; (v) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C16H26NO2+·C4H5O4−·H2O |
Mr | 399.48 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 6.542 (5), 9.324 (8), 17.631 (14) |
α, β, γ (°) | 77.594 (17), 84.00 (2), 89.39 (2) |
V (Å3) | 1044.5 (15) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.50 × 0.30 × 0.12 |
Data collection | |
Diffractometer | Rigaku Mercury diffractometer |
Absorption correction | Multi-scan (Jacobson, 1998) |
Tmin, Tmax | 0.964, 0.989 |
No. of measured, independent and observed [F2 > 2σ(F2)] reflections | 11016, 3995, 2265 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.689 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.065, 0.101, 1.25 |
No. of reflections | 3875 |
No. of parameters | 299 |
No. of restraints | ? |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.36, −0.34 |
Computer programs: CrystalClear (Rigaku, 1999), CrystalStructure (Rigaku/MSC, 2004), SIR2004 (Burla et al., 2005), CRYSTALS (Betteridge et al., 2003), ORTEPIII (Burnett & Johnson, 1996), X-SEED (Barbour, 2001) and Mercury (Macrae et al., 2006.
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2i | 0.94 (3) | 1.72 (3) | 2.655 (4) | 179 (3) |
O2—H21···O7ii | 0.88 (3) | 1.83 (3) | 2.698 (4) | 171 (2) |
O7—H72···O1 | 0.79 (4) | 2.13 (3) | 2.836 (4) | 149 (3) |
O3—H31···O5iii | 1.18 (4) | 1.28 (4) | 2.450 (3) | 176 (3) |
N1—H11···O3 | 0.96 (3) | 2.25 (3) | 3.085 (4) | 145 (2) |
N1—H11···O4 | 0.96 (3) | 2.01 (3) | 2.870 (4) | 149 (2) |
O7—H71···O6 | 0.94 (4) | 1.84 (4) | 2.753 (4) | 162 (3) |
C16—H163···O6ii | 0.9500 | 2.5600 | 3.386 (5) | 145.00 |
C14—H141···O7iv | 0.9500 | 2.6600 | 3.485 (4) | 145.00 |
Symmetry codes: (i) x, y+1, z; (ii) x−1, y−1, z; (iii) x−1, y, z; (iv) x, y−1, z. |
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The title compound, (I), is a monohydrate of the 1:1 salt of 1-[2-dimethylamino)-1-(4-hydroxyphenyl)ethyl]cyclohexanol with succinic acid. Desvenlafaxine succinate is an antidepressant drug belonging to the class of serotonin–norepinephrine reuptake inhibitors and is expected to be marketed as Pristiq (Deecher et al., 2006). It is a racemic mixture and is reported to exist in four crystalline polymorphs (Hadfield et al., 2004). The crystalline form reported here is Form I.
The asymmetric unit consists of one desvenalfaxine cation, a succinate anion and a water molecule (Fig. 1). The dimethylaminomethyl group of the desvenlafaxine molecule is protonated by succinic acid. The hydroxy group lies perpendicular to the cyclohexane ring, while the bulkier dimethylaminohydroxyphenylethyl group is coplanar with this ring, adopting a rigid T-shaped geometry with the dimethylaminomethyl and cyclohexanol groups representing the arms. The cyclohexyl ring assumes a chair conformation, with the endocyclic bond angles close to the tetrahedral value [109.5 (2)–112.7 (2)°] and with average endocyclic torsion angle values of about ±55°. Interestingly, the carboxyl group adopts the uncommon anti conformation (i.e. the acid H atom points away from the carbonyl O atom). The occurrence and energetics of this conformation have been discussed by DeVita Dufort et al. (2007).
Desvenlafaxine cations and water molecules self-assemble to form a honeycomb-like hydrogen-bonded network parallel to the ab crystallographic plane, in such a way that all the dimethylammonium groups point in one direction perpendicular to the hydrogen-bonded layer, while all the cyclohexane groups point in the opposite direction, generating a series of hydrophilic and hydrophobic grooves on opposite sides of the hydrogen-bonded layer (Fig. 2). The cations and water molecules in this layer are connected by infinite (OH)phenyl···(OH)cyclohexyl···(OH)water···(OH)phenyl hydrogen-bonded chains running parallel to [100] (entries 1–3, respectively, Table 1). The hydrophilic grooves are lined with the OH and NH+ groups of water molecules and desvenlafaxine cations, respectively. Infinite hydrogen-bonded tapes of succinate anions connected by a short O—H···O- hydrogen bond (entry 4, Table 1) fill these hydrophilic grooves. The succinate anion also forms hydrogen-bonding contacts with both NH+ and OH groups, coating the grooves (entries 5–7, Table 1). In addition, there is a C—H···O hydrogen bond with the N-methyl group (entry 8 [or entry 10?], Table 1, Desiraju & Steiner, 1999). Thus, in order to maximize the attractive interactions, the carboxylic acid group must adopt the anti conformation. The inversion-related layers stack to form alternating hydrophobic and hydrophilic layers along [001], with layer thicknesses of about 7 and 11 Å, respectively. The hydrophobic grooves interdigitate with one another, while the hydrophilic grooves filled with the succinate anion tapes do not. As a result, the hydrophobic layer is thinner than the hydrophilic layer.
The water molecules are so tightly held in the crystal structure that desolvation and melting occur almost simultaneously. The differential scanning calorimetry trace shows a single endotherm with a mid-point temperature of 401.8 K (heating rate 10 K min-1). The water molecule is involved in the formation of as many as three strong hydrogen bonds, bridging the desvenlafaxine ions and linking the desvenlafaxine cations and succinate anions (Fig. 2 and Table 1). In addition, it also accepts a C—H···O hydrogen bond from atom C14 (entry 9, Table 1). The donor and acceptor groups around the water molecules are in nearly ideal tetrahedral positions. Another interesting feature is the occurrence of a short O—H···O- hydrogen bond between the indistinguishable carboxylic acid and carboxylate groups. Thus, one C—O bond [C17—O3 = 1.286 (3) Å and C20—O5 = 1.291 (3) Å] is longer than the other [C17—O4 = 1.224 (4) Å and C20—O6 = 1.234 (4) Å] on each acid group. On the other hand, if the acidic H atom were owned completely by one acid group, one would expect two sets of C—O bond distances, one corresponding to the carboxylic acid group (one C—O bond distance much longer than the other) and the other corresponding to a delocalized carboxylate group (nearly equivalent C—O distances). The acidic H atom is actually shared between atoms O3 and O5 in the short hydrogen bond. Such interactions are known as low-barrier hydrogen bonds and are considered to be very strong (Vishweshwar et al., 2004; Hibbert & Emsley, 1990).