Buy article online - an online subscription or single-article purchase is required to access this article.
The structures of orthorhombic (E)-4-(2-{[amino(iminio)methyl]amino}vinyl)-3,5-dichlorophenolate dihydrate, C8H8Cl2N4O·2H2O, (I), triclinic (E)-4-(2-{[amino(iminio)methyl]amino}vinyl)-3,5-dichlorophenolate methanol disolvate, C8H8Cl2N4O·2CH4O, (II), and orthorhombic (E)-amino[(2,6-dichloro-4-hydroxystyryl)amino]methaniminium acetate, C8H9Cl2N4O+·C2H3O2-, (III), all crystallize with one formula unit in the asymmetric unit, with the molecule in an E configuration and the phenol H atom transferred to the guanidine N atom. Although the molecules of the title compounds form extended chains via hydrogen bonding in all three forms, owing to the presence of different solvent molecules, those chains are connected differently in the individual forms. In (II), the molecules are all coplanar, while in (I) and (III), adjacent molecules are tilted relative to one another to varying degrees. Also, because of the variation in hydrogen-bond-formation ability of the solvents, the hydrogen-bonding arrangements vary in the three forms.
Supporting information
CCDC references: 842148; 842149; 842150
Compound (1) was synthesized according to a modified literature procedure (Li
et al., 2010; Holzer et al., 1992; Gug et
al., 2010). To
a solution of HCl (20%, 1 ml) in ethanol (17 ml) was added
2,6-dichloro-4-hydroxybenzaldehyde (0.5g, 2.62 mmol), followed by a solution
of aminoguanidin bicarbonate in H2O (3 ml) slowly. After liberation of
CO2, the solution was heated to reflux and then cooled to room temperature.
Then, an aqueous solution of 40% KOH (8.5 ml) was added and the solution was
refluxed for 10 min. Afterward, the solution was left stirring overnight at
room temperature. To quench the reaction, the pH was adjusted to 7 using 5N
NaOH. NaHCO3 (15 ml) and dichloromethane (15 ml) were added and the mixture
was stirred for 30 min. The product precipitated as an orange powder. The
crystals were grown from acetone, (I), methanol, (II), and acetic acid, (III).
For (II) and (III), H atoms were found in difference Fourier maps and were
subsequently placed in idealized positions, with O—H = 0.84 Å, N—H =
0.88 Å, Csp2—H = 0.93 Å and Csp3—H = 0.96 Å for methyl H atoms.
For (I), H atoms were all found in difference Fourier maps and were
subsequently placed in idealized positions, except for those on the water
molecules, with N—H = 0.88 Å, Csp2—H = 0.93 Å and Csp3—H =
0.96 Å for methyl H atoms. The water H atoms were refined with restraints
of O—H = 0.82 (2) Å and H···H = 1.30 (3) Å. Isotropic displacement
parameters for all H atoms were fixed at Uiso(H) = 1.5Ueq(parent atoms)
for hydroxy and methyl H atoms and 1.2Ueq(parent atoms) for all others.
For all compounds, data collection: COLLECT (Nonius, 1998); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO-SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008). Software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and local procedures for (I), (II); SHELX97 (Sheldrick, 2008) and local procedures for (III).
(I) (
E)-4-(2-{[amino(iminio)methyl]amino}vinyl)-3,5-dichlorophenolate
dihydrate
top
Crystal data top
C8H8Cl2N4O·2H2O | Dx = 1.485 Mg m−3 |
Mr = 283.12 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 3301 reflections |
a = 6.8802 (1) Å | θ = 1.0–27.5° |
b = 16.7892 (4) Å | µ = 0.52 mm−1 |
c = 21.9240 (5) Å | T = 90 K |
V = 2532.51 (9) Å3 | Needle, colorless |
Z = 8 | 0.40 × 0.10 × 0.03 mm |
F(000) = 1168 | |
Data collection top
Nonius KappaCCD diffractometer | 2898 independent reflections |
Radiation source: fine-focus sealed tube | 1692 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.061 |
Detector resolution: 18 pixels mm-1 | θmax = 27.5°, θmin = 1.9° |
ω scans at fixed χ = 55° | h = −8→8 |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | k = −21→21 |
Tmin = 0.820, Tmax = 0.985 | l = −28→28 |
5390 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.071P)2] where P = (Fo2 + 2Fc2)/3 |
2898 reflections | (Δ/σ)max = 0.001 |
167 parameters | Δρmax = 0.66 e Å−3 |
6 restraints | Δρmin = −0.41 e Å−3 |
Crystal data top
C8H8Cl2N4O·2H2O | V = 2532.51 (9) Å3 |
Mr = 283.12 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 6.8802 (1) Å | µ = 0.52 mm−1 |
b = 16.7892 (4) Å | T = 90 K |
c = 21.9240 (5) Å | 0.40 × 0.10 × 0.03 mm |
Data collection top
Nonius KappaCCD diffractometer | 2898 independent reflections |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | 1692 reflections with I > 2σ(I) |
Tmin = 0.820, Tmax = 0.985 | Rint = 0.061 |
5390 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.053 | 6 restraints |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.66 e Å−3 |
2898 reflections | Δρmin = −0.41 e Å−3 |
167 parameters | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cl1 | 0.53741 (12) | 0.40341 (4) | 0.77631 (3) | 0.0226 (2) | |
O1 | 0.5751 (3) | 0.31245 (11) | 0.55752 (8) | 0.0228 (5) | |
C4 | 0.6041 (4) | 0.24863 (16) | 0.74267 (13) | 0.0183 (7) | |
Cl2 | 0.67992 (12) | 0.09293 (4) | 0.70898 (3) | 0.0240 (2) | |
C3 | 0.5685 (5) | 0.32651 (16) | 0.72278 (13) | 0.0193 (7) | |
C2 | 0.5581 (4) | 0.34924 (17) | 0.66244 (13) | 0.0195 (7) | |
H2 | 0.5337 | 0.4033 | 0.6522 | 0.023* | |
C1 | 0.5836 (5) | 0.29268 (18) | 0.61650 (13) | 0.0212 (7) | |
C6 | 0.6226 (5) | 0.21380 (18) | 0.63426 (13) | 0.0205 (7) | |
H6 | 0.6429 | 0.1742 | 0.6040 | 0.025* | |
C5 | 0.6316 (5) | 0.19333 (16) | 0.69504 (14) | 0.0198 (7) | |
C7 | 0.6033 (5) | 0.23057 (16) | 0.80773 (13) | 0.0185 (7) | |
H7 | 0.5600 | 0.2705 | 0.8353 | 0.022* | |
N8 | 0.6579 (4) | 0.16375 (14) | 0.82941 (11) | 0.0215 (6) | |
N9 | 0.6422 (4) | 0.15480 (14) | 0.89184 (11) | 0.0226 (6) | |
H9 | 0.6046 | 0.1938 | 0.9159 | 0.027* | |
C10 | 0.6885 (5) | 0.08229 (17) | 0.91313 (14) | 0.0210 (7) | |
N11 | 0.7468 (4) | 0.02731 (14) | 0.87434 (11) | 0.0297 (7) | |
H11A | 0.7800 | −0.0202 | 0.8877 | 0.036* | |
H11B | 0.7527 | 0.0381 | 0.8351 | 0.036* | |
N12 | 0.6793 (4) | 0.06648 (15) | 0.97222 (11) | 0.0246 (7) | |
H12A | 0.7123 | 0.0190 | 0.9858 | 0.030* | |
H12B | 0.6403 | 0.1034 | 0.9979 | 0.030* | |
O1W | 0.2315 (4) | 0.39940 (12) | 0.54192 (12) | 0.0307 (6) | |
H1W1 | 0.333 (4) | 0.3727 (19) | 0.5475 (17) | 0.046* | |
H2W1 | 0.141 (4) | 0.3696 (19) | 0.5391 (17) | 0.046* | |
O2W | 0.4685 (3) | 0.22363 (12) | 0.46540 (9) | 0.0229 (5) | |
H1W2 | 0.485 (4) | 0.243 (2) | 0.4996 (11) | 0.034* | |
H2W2 | 0.350 (3) | 0.217 (2) | 0.4613 (14) | 0.034* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cl1 | 0.0293 (5) | 0.0189 (4) | 0.0195 (4) | 0.0008 (3) | −0.0006 (3) | −0.0038 (3) |
O1 | 0.0327 (14) | 0.0232 (11) | 0.0125 (11) | −0.0010 (10) | −0.0021 (10) | 0.0008 (9) |
C4 | 0.0172 (16) | 0.0196 (15) | 0.0183 (17) | −0.0025 (14) | −0.0004 (14) | 0.0003 (12) |
Cl2 | 0.0350 (5) | 0.0159 (4) | 0.0211 (4) | 0.0013 (4) | −0.0003 (4) | 0.0003 (3) |
C3 | 0.0212 (19) | 0.0167 (15) | 0.0200 (17) | −0.0004 (13) | 0.0006 (14) | −0.0029 (13) |
C2 | 0.0215 (19) | 0.0138 (15) | 0.0232 (17) | −0.0003 (13) | −0.0022 (14) | 0.0016 (12) |
C1 | 0.0246 (19) | 0.0252 (17) | 0.0138 (16) | −0.0019 (15) | 0.0010 (14) | 0.0019 (13) |
C6 | 0.0241 (19) | 0.0216 (16) | 0.0160 (17) | −0.0020 (15) | 0.0009 (14) | −0.0017 (13) |
C5 | 0.0200 (19) | 0.0166 (15) | 0.0230 (17) | −0.0013 (13) | −0.0006 (14) | 0.0006 (13) |
C7 | 0.0207 (18) | 0.0181 (15) | 0.0167 (16) | −0.0048 (14) | 0.0013 (14) | −0.0005 (12) |
N8 | 0.0235 (16) | 0.0262 (14) | 0.0146 (14) | −0.0003 (12) | 0.0018 (12) | 0.0019 (11) |
N9 | 0.0337 (18) | 0.0208 (14) | 0.0133 (14) | 0.0017 (12) | 0.0032 (12) | 0.0005 (11) |
C10 | 0.0229 (19) | 0.0205 (16) | 0.0197 (17) | 0.0012 (14) | 0.0003 (14) | 0.0007 (13) |
N11 | 0.051 (2) | 0.0195 (14) | 0.0183 (15) | 0.0071 (14) | 0.0067 (14) | 0.0006 (11) |
N12 | 0.0428 (19) | 0.0172 (13) | 0.0139 (14) | 0.0052 (13) | 0.0033 (13) | 0.0017 (10) |
O1W | 0.0339 (16) | 0.0203 (12) | 0.0379 (15) | −0.0037 (11) | −0.0032 (13) | 0.0009 (11) |
O2W | 0.0276 (14) | 0.0241 (12) | 0.0170 (12) | −0.0020 (11) | −0.0026 (11) | −0.0014 (9) |
Geometric parameters (Å, º) top
Cl1—C3 | 1.758 (3) | N8—N9 | 1.381 (3) |
O1—C1 | 1.336 (3) | N9—C10 | 1.342 (3) |
C4—C3 | 1.400 (4) | N9—H9 | 0.8800 |
C4—C5 | 1.410 (4) | C10—N11 | 1.318 (4) |
C4—C7 | 1.458 (4) | C10—N12 | 1.324 (4) |
Cl2—C5 | 1.745 (3) | N11—H11A | 0.8800 |
C3—C2 | 1.379 (4) | N11—H11B | 0.8800 |
C2—C1 | 1.395 (4) | N12—H12A | 0.8800 |
C2—H2 | 0.9500 | N12—H12B | 0.8800 |
C1—C6 | 1.406 (4) | O1W—H1W1 | 0.84 (2) |
C6—C5 | 1.377 (4) | O1W—H2W1 | 0.80 (2) |
C6—H6 | 0.9500 | O2W—H1W2 | 0.82 (2) |
C7—N8 | 1.275 (3) | O2W—H2W2 | 0.82 (2) |
C7—H7 | 0.9500 | | |
| | | |
C3—C4—C5 | 114.1 (3) | N8—C7—C4 | 123.1 (3) |
C3—C4—C7 | 119.9 (3) | N8—C7—H7 | 118.4 |
C5—C4—C7 | 126.0 (3) | C4—C7—H7 | 118.4 |
C2—C3—C4 | 124.5 (3) | C7—N8—N9 | 116.2 (2) |
C2—C3—Cl1 | 115.5 (2) | C10—N9—N8 | 115.1 (2) |
C4—C3—Cl1 | 120.0 (2) | C10—N9—H9 | 122.4 |
C3—C2—C1 | 119.8 (3) | N8—N9—H9 | 122.4 |
C3—C2—H2 | 120.1 | N11—C10—N12 | 120.4 (3) |
C1—C2—H2 | 120.1 | N11—C10—N9 | 118.9 (3) |
O1—C1—C2 | 121.6 (3) | N12—C10—N9 | 120.7 (3) |
O1—C1—C6 | 120.7 (3) | C10—N11—H11A | 120.0 |
C2—C1—C6 | 117.7 (3) | C10—N11—H11B | 120.0 |
C5—C6—C1 | 120.8 (3) | H11A—N11—H11B | 120.0 |
C5—C6—H6 | 119.6 | C10—N12—H12A | 120.0 |
C1—C6—H6 | 119.6 | C10—N12—H12B | 120.0 |
C6—C5—C4 | 123.1 (3) | H12A—N12—H12B | 120.0 |
C6—C5—Cl2 | 114.8 (2) | H1W1—O1W—H2W1 | 109 (3) |
C4—C5—Cl2 | 122.1 (2) | H1W2—O2W—H2W2 | 107 (3) |
| | | |
C5—C4—C3—C2 | 0.7 (4) | C1—C6—C5—Cl2 | 179.7 (3) |
C7—C4—C3—C2 | −177.2 (3) | C3—C4—C5—C6 | −0.5 (4) |
C5—C4—C3—Cl1 | −178.3 (2) | C7—C4—C5—C6 | 177.2 (3) |
C7—C4—C3—Cl1 | 3.8 (4) | C3—C4—C5—Cl2 | 179.5 (2) |
C4—C3—C2—C1 | 0.1 (5) | C7—C4—C5—Cl2 | −2.8 (4) |
Cl1—C3—C2—C1 | 179.1 (2) | C3—C4—C7—N8 | −171.0 (3) |
C3—C2—C1—O1 | −179.8 (3) | C5—C4—C7—N8 | 11.4 (5) |
C3—C2—C1—C6 | −1.0 (5) | C4—C7—N8—N9 | −177.8 (3) |
O1—C1—C6—C5 | 179.9 (3) | C7—N8—N9—C10 | 175.9 (3) |
C2—C1—C6—C5 | 1.1 (5) | N8—N9—C10—N11 | 1.2 (4) |
C1—C6—C5—C4 | −0.3 (5) | N8—N9—C10—N12 | 179.9 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N9—H9···O2Wi | 0.88 | 1.99 | 2.863 (3) | 169 |
N11—H11A···O1Wii | 0.88 | 2.05 | 2.829 (3) | 147 |
N11—H11B···Cl2 | 0.88 | 2.96 | 3.817 (3) | 166 |
N12—H12A···O1Wii | 0.88 | 2.13 | 2.888 (3) | 143 |
N12—H12B···O1i | 0.88 | 1.98 | 2.854 (3) | 175 |
O1W—H1W1···O1 | 0.84 (2) | 1.96 (2) | 2.800 (3) | 178 (4) |
O1W—H2W1···O2Wiii | 0.80 (2) | 1.97 (2) | 2.751 (3) | 166 (3) |
O2W—H1W2···O1 | 0.82 (2) | 1.83 (2) | 2.616 (3) | 158 (3) |
O2W—H2W2···O1iii | 0.82 (2) | 2.00 (2) | 2.819 (3) | 171 (3) |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) −x+1, y−1/2, −z+3/2; (iii) x−1/2, −y+1/2, −z+1. |
(II) (
E)-4-(2-{[amino(iminio)methyl]amino}vinyl)-3,5-dichlorophenolate
methanol disolvate
top
Crystal data top
C8H8Cl2N4O·2CH4O | Z = 2 |
Mr = 311.17 | F(000) = 324 |
Triclinic, P1 | Dx = 1.439 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.0255 (1) Å | Cell parameters from 3251 reflections |
b = 10.0683 (2) Å | θ = 1.0–27.5° |
c = 11.7580 (2) Å | µ = 0.46 mm−1 |
α = 112.3416 (8)° | T = 90 K |
β = 93.9597 (9)° | Block, colourless |
γ = 107.4271 (9)° | 0.40 × 0.30 × 0.20 mm |
V = 718.02 (2) Å3 | |
Data collection top
Nonius KappaCCD diffractometer | 3269 independent reflections |
Radiation source: fine-focus sealed tube | 2673 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
Detector resolution: 9.1 pixels mm-1 | θmax = 27.5°, θmin = 1.9° |
ω scans at fixed χ = 55° | h = −9→9 |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | k = −13→12 |
Tmin = 0.837, Tmax = 0.913 | l = −15→15 |
6495 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.095 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0453P)2 + 0.3166P] where P = (Fo2 + 2Fc2)/3 |
3269 reflections | (Δ/σ)max = 0.001 |
176 parameters | Δρmax = 0.34 e Å−3 |
0 restraints | Δρmin = −0.33 e Å−3 |
Crystal data top
C8H8Cl2N4O·2CH4O | γ = 107.4271 (9)° |
Mr = 311.17 | V = 718.02 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.0255 (1) Å | Mo Kα radiation |
b = 10.0683 (2) Å | µ = 0.46 mm−1 |
c = 11.7580 (2) Å | T = 90 K |
α = 112.3416 (8)° | 0.40 × 0.30 × 0.20 mm |
β = 93.9597 (9)° | |
Data collection top
Nonius KappaCCD diffractometer | 3269 independent reflections |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | 2673 reflections with I > 2σ(I) |
Tmin = 0.837, Tmax = 0.913 | Rint = 0.027 |
6495 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.095 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.34 e Å−3 |
3269 reflections | Δρmin = −0.33 e Å−3 |
176 parameters | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against all reflections. The weighted R-value wR and
goodness of fit S are based on F2. Conventional R-values R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-values based
on F2 are statistically about twice as large as those based on F, and
R-values based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cl1 | 0.87919 (6) | 1.04881 (4) | 0.31259 (4) | 0.02157 (12) | |
Cl2 | 0.53514 (7) | 0.75447 (5) | 0.59664 (4) | 0.02501 (13) | |
O1 | 0.68224 (19) | 0.47871 (13) | 0.17692 (11) | 0.0246 (3) | |
C4 | 0.7178 (2) | 0.90206 (17) | 0.45646 (14) | 0.0154 (3) | |
C3 | 0.7800 (2) | 0.88676 (19) | 0.34198 (15) | 0.0175 (3) | |
C2 | 0.7675 (2) | 0.74826 (19) | 0.24789 (15) | 0.0188 (3) | |
H2 | 0.8128 | 0.7458 | 0.1731 | 0.023* | |
C1 | 0.6886 (2) | 0.61173 (19) | 0.26242 (15) | 0.0191 (3) | |
C6 | 0.6182 (3) | 0.62176 (19) | 0.37365 (16) | 0.0203 (3) | |
H6 | 0.5597 | 0.5310 | 0.3854 | 0.024* | |
C5 | 0.6331 (2) | 0.76164 (19) | 0.46573 (15) | 0.0175 (3) | |
C7 | 0.7447 (2) | 1.05409 (19) | 0.55230 (15) | 0.0176 (3) | |
H7 | 0.7964 | 1.1402 | 0.5334 | 0.021* | |
N8 | 0.7017 (2) | 1.07651 (15) | 0.66070 (13) | 0.0184 (3) | |
N9 | 0.7384 (2) | 1.22675 (15) | 0.74020 (12) | 0.0185 (3) | |
H9 | 0.7884 | 1.3012 | 0.7167 | 0.022* | |
C10 | 0.6954 (2) | 1.25627 (19) | 0.85477 (15) | 0.0187 (3) | |
N12 | 0.7304 (2) | 1.40192 (16) | 0.93120 (13) | 0.0230 (3) | |
H12A | 0.7051 | 1.4255 | 1.0073 | 0.028* | |
H12B | 0.7790 | 1.4746 | 0.9057 | 0.028* | |
N11 | 0.6228 (2) | 1.14271 (16) | 0.88806 (13) | 0.0233 (3) | |
H11A | 0.5957 | 1.1619 | 0.9634 | 0.028* | |
H11B | 0.6016 | 1.0477 | 0.8349 | 0.028* | |
C13 | 1.0498 (4) | 0.4265 (3) | 0.3339 (3) | 0.0527 (7) | |
H13A | 1.1524 | 0.3783 | 0.3330 | 0.079* | |
H13B | 0.9145 | 0.3522 | 0.3222 | 0.079* | |
H13C | 1.0804 | 0.5154 | 0.4147 | 0.079* | |
O15 | 1.0532 (2) | 0.47495 (15) | 0.23545 (13) | 0.0292 (3) | |
H15 | 0.9352 | 0.4687 | 0.2089 | 0.044* | |
C14 | 0.2570 (3) | 0.1542 (3) | 0.0776 (2) | 0.0382 (5) | |
H14A | 0.1854 | 0.1259 | 0.1383 | 0.057* | |
H14B | 0.2032 | 0.0692 | −0.0062 | 0.057* | |
H14C | 0.2362 | 0.2456 | 0.0761 | 0.057* | |
O16 | 0.46957 (19) | 0.18621 (14) | 0.11360 (12) | 0.0264 (3) | |
H16 | 0.5313 | 0.2816 | 0.1485 | 0.040* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cl1 | 0.0273 (2) | 0.0184 (2) | 0.0195 (2) | 0.00569 (17) | 0.00861 (16) | 0.00966 (17) |
Cl2 | 0.0392 (3) | 0.0182 (2) | 0.0200 (2) | 0.00961 (18) | 0.01616 (18) | 0.00922 (17) |
O1 | 0.0344 (7) | 0.0157 (6) | 0.0177 (6) | 0.0078 (5) | 0.0089 (5) | 0.0011 (5) |
C4 | 0.0154 (8) | 0.0147 (8) | 0.0144 (8) | 0.0044 (6) | 0.0034 (6) | 0.0049 (6) |
C3 | 0.0165 (8) | 0.0170 (8) | 0.0182 (8) | 0.0045 (6) | 0.0042 (6) | 0.0077 (6) |
C2 | 0.0204 (8) | 0.0205 (8) | 0.0140 (8) | 0.0068 (7) | 0.0065 (6) | 0.0055 (7) |
C1 | 0.0196 (8) | 0.0180 (8) | 0.0161 (8) | 0.0059 (6) | 0.0042 (6) | 0.0040 (7) |
C6 | 0.0240 (9) | 0.0156 (8) | 0.0196 (8) | 0.0058 (7) | 0.0062 (7) | 0.0063 (7) |
C5 | 0.0193 (8) | 0.0199 (8) | 0.0140 (7) | 0.0074 (7) | 0.0065 (6) | 0.0070 (6) |
C7 | 0.0205 (8) | 0.0155 (8) | 0.0170 (8) | 0.0066 (6) | 0.0048 (6) | 0.0065 (6) |
N8 | 0.0205 (7) | 0.0156 (7) | 0.0166 (7) | 0.0071 (6) | 0.0046 (5) | 0.0037 (6) |
N9 | 0.0242 (7) | 0.0133 (7) | 0.0160 (7) | 0.0053 (6) | 0.0072 (6) | 0.0047 (5) |
C10 | 0.0186 (8) | 0.0197 (8) | 0.0161 (8) | 0.0073 (7) | 0.0044 (6) | 0.0051 (7) |
N12 | 0.0313 (8) | 0.0164 (7) | 0.0156 (7) | 0.0059 (6) | 0.0065 (6) | 0.0027 (6) |
N11 | 0.0338 (8) | 0.0175 (7) | 0.0151 (7) | 0.0074 (6) | 0.0099 (6) | 0.0037 (6) |
C13 | 0.0514 (15) | 0.0628 (17) | 0.0685 (17) | 0.0225 (13) | 0.0216 (13) | 0.0496 (15) |
O15 | 0.0307 (7) | 0.0261 (7) | 0.0357 (8) | 0.0105 (6) | 0.0131 (6) | 0.0168 (6) |
C14 | 0.0339 (11) | 0.0430 (12) | 0.0349 (11) | 0.0091 (9) | 0.0074 (9) | 0.0168 (10) |
O16 | 0.0309 (7) | 0.0208 (6) | 0.0226 (6) | 0.0048 (5) | 0.0086 (5) | 0.0069 (5) |
Geometric parameters (Å, º) top
Cl1—C3 | 1.7459 (17) | C10—N11 | 1.319 (2) |
Cl2—C5 | 1.7460 (16) | C10—N12 | 1.330 (2) |
O1—C1 | 1.3194 (19) | N12—H12A | 0.8800 |
C4—C5 | 1.410 (2) | N12—H12B | 0.8800 |
C4—C3 | 1.411 (2) | N11—H11A | 0.8800 |
C4—C7 | 1.461 (2) | N11—H11B | 0.8800 |
C3—C2 | 1.384 (2) | C13—O15 | 1.416 (3) |
C2—C1 | 1.401 (2) | C13—H13A | 0.9800 |
C2—H2 | 0.9500 | C13—H13B | 0.9800 |
C1—C6 | 1.408 (2) | C13—H13C | 0.9800 |
C6—C5 | 1.380 (2) | O15—H15 | 0.8400 |
C6—H6 | 0.9500 | C14—O16 | 1.426 (2) |
C7—N8 | 1.282 (2) | C14—H14A | 0.9800 |
C7—H7 | 0.9500 | C14—H14B | 0.9800 |
N8—N9 | 1.3735 (19) | C14—H14C | 0.9800 |
N9—C10 | 1.342 (2) | O16—H16 | 0.8400 |
N9—H9 | 0.8800 | | |
| | | |
C5—C4—C3 | 113.95 (14) | N8—N9—H9 | 121.1 |
C5—C4—C7 | 126.11 (14) | N11—C10—N12 | 122.59 (15) |
C3—C4—C7 | 119.94 (14) | N11—C10—N9 | 119.84 (15) |
C2—C3—C4 | 123.96 (15) | N12—C10—N9 | 117.57 (15) |
C2—C3—Cl1 | 116.17 (13) | C10—N12—H12A | 120.0 |
C4—C3—Cl1 | 119.88 (12) | C10—N12—H12B | 120.0 |
C3—C2—C1 | 120.36 (15) | H12A—N12—H12B | 120.0 |
C3—C2—H2 | 119.8 | C10—N11—H11A | 120.0 |
C1—C2—H2 | 119.8 | C10—N11—H11B | 120.0 |
O1—C1—C2 | 121.91 (14) | H11A—N11—H11B | 120.0 |
O1—C1—C6 | 120.78 (15) | O15—C13—H13A | 109.5 |
C2—C1—C6 | 117.30 (14) | O15—C13—H13B | 109.5 |
C5—C6—C1 | 120.90 (16) | H13A—C13—H13B | 109.5 |
C5—C6—H6 | 119.6 | O15—C13—H13C | 109.5 |
C1—C6—H6 | 119.6 | H13A—C13—H13C | 109.5 |
C6—C5—C4 | 123.47 (15) | H13B—C13—H13C | 109.5 |
C6—C5—Cl2 | 115.35 (13) | C13—O15—H15 | 109.5 |
C4—C5—Cl2 | 121.17 (12) | O16—C14—H14A | 109.5 |
N8—C7—C4 | 122.97 (15) | O16—C14—H14B | 109.5 |
N8—C7—H7 | 118.5 | H14A—C14—H14B | 109.5 |
C4—C7—H7 | 118.5 | O16—C14—H14C | 109.5 |
C7—N8—N9 | 115.51 (14) | H14A—C14—H14C | 109.5 |
C10—N9—N8 | 117.82 (14) | H14B—C14—H14C | 109.5 |
C10—N9—H9 | 121.1 | C14—O16—H16 | 109.5 |
| | | |
C5—C4—C3—C2 | −2.3 (2) | C1—C6—C5—Cl2 | 178.97 (13) |
C7—C4—C3—C2 | 177.49 (15) | C3—C4—C5—C6 | 2.2 (2) |
C5—C4—C3—Cl1 | 177.54 (12) | C7—C4—C5—C6 | −177.61 (15) |
C7—C4—C3—Cl1 | −2.6 (2) | C3—C4—C5—Cl2 | −176.82 (12) |
C4—C3—C2—C1 | 0.4 (3) | C7—C4—C5—Cl2 | 3.4 (2) |
Cl1—C3—C2—C1 | −179.53 (12) | C5—C4—C7—N8 | 3.7 (3) |
C3—C2—C1—O1 | −177.18 (15) | C3—C4—C7—N8 | −176.12 (15) |
C3—C2—C1—C6 | 1.9 (2) | C4—C7—N8—N9 | 179.24 (14) |
O1—C1—C6—C5 | 177.06 (15) | C7—N8—N9—C10 | 179.85 (14) |
C2—C1—C6—C5 | −2.0 (2) | N8—N9—C10—N11 | 0.8 (2) |
C1—C6—C5—C4 | −0.1 (3) | N8—N9—C10—N12 | −179.74 (14) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O15—H15···O1 | 0.84 | 1.83 | 2.6640 (18) | 171 |
O16—H16···O1 | 0.84 | 1.83 | 2.6464 (17) | 163 |
N9—H9···O15i | 0.88 | 2.02 | 2.8109 (18) | 149 |
N12—H12A···O1ii | 0.88 | 1.89 | 2.7665 (19) | 173 |
N12—H12B···O15i | 0.88 | 2.23 | 2.969 (2) | 142 |
N11—H11A···O16ii | 0.88 | 1.99 | 2.8596 (19) | 167 |
N11—H11B···O16iii | 0.88 | 2.57 | 3.1702 (19) | 127 |
Symmetry codes: (i) −x+2, −y+2, −z+1; (ii) x, y+1, z+1; (iii) −x+1, −y+1, −z+1. |
(III) (
E)-amino[(2,6-dichloro-4-hydroxystyryl)amino]methaniminium acetate
top
Crystal data top
C8H9Cl2N4O+·C2H3O2− | Dx = 1.584 Mg m−3 |
Mr = 307.14 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 3373 reflections |
a = 15.9630 (1) Å | θ = 1.0–27.5° |
b = 7.4060 (2) Å | µ = 0.51 mm−1 |
c = 21.7930 (3) Å | T = 90 K |
V = 2576.41 (8) Å3 | Plate, yellow |
Z = 8 | 0.40 × 0.20 × 0.10 mm |
F(000) = 1264 | |
Data collection top
Nonius KappaCCD diffractometer | 2952 independent reflections |
Radiation source: fine-focus sealed tube | 2375 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.020 |
Detector resolution: 18 pixels mm-1 | θmax = 27.5°, θmin = 1.9° |
ω scans at fixed χ = 55° | h = −20→20 |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | k = −9→9 |
Tmin = 0.821, Tmax = 0.950 | l = −28→28 |
5505 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.045P)2 + 2.1571P] where P = (Fo2 + 2Fc2)/3 |
2952 reflections | (Δ/σ)max = 0.001 |
174 parameters | Δρmax = 0.38 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
Crystal data top
C8H9Cl2N4O+·C2H3O2− | V = 2576.41 (8) Å3 |
Mr = 307.14 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 15.9630 (1) Å | µ = 0.51 mm−1 |
b = 7.4060 (2) Å | T = 90 K |
c = 21.7930 (3) Å | 0.40 × 0.20 × 0.10 mm |
Data collection top
Nonius KappaCCD diffractometer | 2952 independent reflections |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | 2375 reflections with I > 2σ(I) |
Tmin = 0.821, Tmax = 0.950 | Rint = 0.020 |
5505 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.38 e Å−3 |
2952 reflections | Δρmin = −0.34 e Å−3 |
174 parameters | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cl2 | 1.07155 (3) | 0.28736 (7) | 0.45954 (2) | 0.01973 (13) | |
O1 | 0.88677 (8) | −0.0078 (2) | 0.30487 (6) | 0.0233 (3) | |
H1 | 0.8373 | −0.0403 | 0.2977 | 0.035* | |
C4 | 0.91343 (11) | 0.1639 (3) | 0.48732 (8) | 0.0164 (4) | |
Cl1 | 0.75724 (3) | 0.03255 (7) | 0.51572 (2) | 0.02042 (13) | |
C3 | 0.84077 (11) | 0.0771 (3) | 0.46581 (8) | 0.0173 (4) | |
C2 | 0.82964 (11) | 0.0180 (3) | 0.40625 (8) | 0.0182 (4) | |
H2 | 0.7794 | −0.0416 | 0.3946 | 0.022* | |
C1 | 0.89309 (11) | 0.0468 (3) | 0.36348 (8) | 0.0178 (4) | |
C6 | 0.96676 (11) | 0.1323 (3) | 0.38199 (8) | 0.0187 (4) | |
H6 | 1.0106 | 0.1523 | 0.3533 | 0.022* | |
C5 | 0.97596 (11) | 0.1879 (3) | 0.44206 (9) | 0.0168 (4) | |
C7 | 0.91835 (11) | 0.2184 (3) | 0.55131 (8) | 0.0167 (4) | |
H7 | 0.8701 | 0.2008 | 0.5762 | 0.020* | |
N8 | 0.98321 (10) | 0.2886 (2) | 0.57661 (7) | 0.0185 (3) | |
N9 | 0.97274 (10) | 0.3331 (2) | 0.63747 (7) | 0.0195 (4) | |
H9 | 0.9253 | 0.3109 | 0.6566 | 0.023* | |
C10 | 1.03725 (11) | 0.4115 (3) | 0.66666 (8) | 0.0180 (4) | |
N11 | 1.10909 (10) | 0.4393 (2) | 0.63789 (7) | 0.0213 (4) | |
H11A | 1.1510 | 0.4916 | 0.6572 | 0.026* | |
H11B | 1.1150 | 0.4055 | 0.5994 | 0.026* | |
N12 | 1.02762 (10) | 0.4618 (2) | 0.72464 (7) | 0.0233 (4) | |
H12A | 1.0692 | 0.5142 | 0.7443 | 0.028* | |
H12B | 0.9796 | 0.4429 | 0.7435 | 0.028* | |
C13 | 0.70888 (13) | 0.2009 (3) | 0.68690 (9) | 0.0249 (4) | |
H13A | 0.6850 | 0.0907 | 0.6692 | 0.037* | |
H13B | 0.7292 | 0.2795 | 0.6539 | 0.037* | |
H13C | 0.6657 | 0.2644 | 0.7105 | 0.037* | |
C14 | 0.78090 (12) | 0.1520 (3) | 0.72871 (9) | 0.0204 (4) | |
O15 | 0.76421 (8) | 0.0862 (2) | 0.78087 (6) | 0.0250 (3) | |
O16 | 0.85473 (9) | 0.1725 (2) | 0.70986 (6) | 0.0266 (3) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cl2 | 0.0144 (2) | 0.0244 (3) | 0.0203 (2) | −0.00447 (18) | −0.00047 (16) | 0.00180 (18) |
O1 | 0.0145 (6) | 0.0389 (9) | 0.0165 (6) | −0.0032 (6) | −0.0008 (5) | −0.0033 (6) |
C4 | 0.0150 (8) | 0.0169 (9) | 0.0174 (9) | 0.0025 (7) | −0.0008 (7) | 0.0025 (7) |
Cl1 | 0.0143 (2) | 0.0251 (3) | 0.0219 (2) | −0.00211 (18) | 0.00351 (16) | −0.00007 (18) |
C3 | 0.0135 (8) | 0.0172 (9) | 0.0212 (9) | 0.0025 (7) | 0.0035 (7) | 0.0042 (7) |
C2 | 0.0108 (8) | 0.0219 (10) | 0.0218 (9) | 0.0000 (7) | −0.0025 (7) | 0.0003 (8) |
C1 | 0.0150 (9) | 0.0216 (10) | 0.0168 (8) | 0.0036 (8) | −0.0018 (7) | 0.0005 (7) |
C6 | 0.0130 (8) | 0.0244 (10) | 0.0186 (9) | 0.0017 (8) | 0.0000 (7) | 0.0034 (8) |
C5 | 0.0122 (8) | 0.0164 (9) | 0.0216 (9) | 0.0014 (7) | −0.0030 (7) | 0.0029 (7) |
C7 | 0.0158 (8) | 0.0145 (9) | 0.0198 (9) | 0.0018 (7) | 0.0008 (7) | 0.0026 (7) |
N8 | 0.0200 (8) | 0.0201 (8) | 0.0154 (7) | 0.0000 (7) | 0.0003 (6) | 0.0002 (6) |
N9 | 0.0143 (7) | 0.0294 (9) | 0.0147 (7) | −0.0029 (7) | 0.0013 (6) | 0.0005 (7) |
C10 | 0.0162 (9) | 0.0196 (10) | 0.0182 (9) | 0.0022 (8) | −0.0005 (7) | 0.0024 (8) |
N11 | 0.0160 (8) | 0.0304 (10) | 0.0175 (8) | −0.0029 (7) | 0.0018 (6) | −0.0036 (7) |
N12 | 0.0159 (8) | 0.0371 (10) | 0.0169 (8) | −0.0007 (7) | 0.0018 (6) | −0.0025 (7) |
C13 | 0.0222 (10) | 0.0325 (12) | 0.0200 (9) | 0.0011 (9) | −0.0018 (8) | 0.0044 (8) |
C14 | 0.0202 (9) | 0.0205 (10) | 0.0205 (9) | −0.0013 (8) | 0.0010 (7) | 0.0015 (8) |
O15 | 0.0168 (7) | 0.0383 (9) | 0.0200 (6) | −0.0006 (6) | 0.0019 (5) | 0.0088 (6) |
O16 | 0.0186 (7) | 0.0374 (9) | 0.0239 (7) | −0.0030 (6) | 0.0039 (6) | 0.0086 (6) |
Geometric parameters (Å, º) top
Cl2—C5 | 1.7367 (18) | N8—N9 | 1.377 (2) |
O1—C1 | 1.344 (2) | N9—C10 | 1.342 (2) |
O1—H1 | 0.8400 | N9—H9 | 0.8800 |
C4—C3 | 1.406 (3) | C10—N11 | 1.323 (2) |
C4—C5 | 1.414 (3) | C10—N12 | 1.326 (2) |
C4—C7 | 1.454 (3) | N11—H11A | 0.8800 |
Cl1—C3 | 1.7520 (18) | N11—H11B | 0.8800 |
C3—C2 | 1.381 (3) | N12—H12A | 0.8800 |
C2—C1 | 1.393 (3) | N12—H12B | 0.8800 |
C2—H2 | 0.9500 | C13—C14 | 1.511 (3) |
C1—C6 | 1.395 (3) | C13—H13A | 0.9800 |
C6—C5 | 1.380 (3) | C13—H13B | 0.9800 |
C6—H6 | 0.9500 | C13—H13C | 0.9800 |
C7—N8 | 1.283 (2) | C14—O16 | 1.257 (2) |
C7—H7 | 0.9500 | C14—O15 | 1.265 (2) |
| | | |
C1—O1—H1 | 109.5 | C7—N8—N9 | 114.39 (15) |
C3—C4—C5 | 114.02 (16) | C10—N9—N8 | 117.83 (15) |
C3—C4—C7 | 119.42 (16) | C10—N9—H9 | 121.1 |
C5—C4—C7 | 126.56 (17) | N8—N9—H9 | 121.1 |
C2—C3—C4 | 124.34 (17) | N11—C10—N12 | 120.55 (17) |
C2—C3—Cl1 | 115.21 (14) | N11—C10—N9 | 120.50 (17) |
C4—C3—Cl1 | 120.44 (14) | N12—C10—N9 | 118.95 (17) |
C3—C2—C1 | 119.13 (17) | C10—N11—H11A | 120.0 |
C3—C2—H2 | 120.4 | C10—N11—H11B | 120.0 |
C1—C2—H2 | 120.4 | H11A—N11—H11B | 120.0 |
O1—C1—C2 | 122.38 (17) | C10—N12—H12A | 120.0 |
O1—C1—C6 | 118.34 (17) | C10—N12—H12B | 120.0 |
C2—C1—C6 | 119.26 (17) | H12A—N12—H12B | 120.0 |
C5—C6—C1 | 119.96 (17) | C14—C13—H13A | 109.5 |
C5—C6—H6 | 120.0 | C14—C13—H13B | 109.5 |
C1—C6—H6 | 120.0 | H13A—C13—H13B | 109.5 |
C6—C5—C4 | 123.28 (17) | C14—C13—H13C | 109.5 |
C6—C5—Cl2 | 115.34 (14) | H13A—C13—H13C | 109.5 |
C4—C5—Cl2 | 121.37 (14) | H13B—C13—H13C | 109.5 |
N8—C7—C4 | 124.63 (17) | O16—C14—O15 | 122.53 (18) |
N8—C7—H7 | 117.7 | O16—C14—C13 | 119.14 (17) |
C4—C7—H7 | 117.7 | O15—C14—C13 | 118.29 (17) |
| | | |
C5—C4—C3—C2 | 0.4 (3) | C1—C6—C5—Cl2 | 178.44 (15) |
C7—C4—C3—C2 | −179.33 (18) | C3—C4—C5—C6 | 0.3 (3) |
C5—C4—C3—Cl1 | 179.00 (14) | C7—C4—C5—C6 | 179.97 (19) |
C7—C4—C3—Cl1 | −0.7 (3) | C3—C4—C5—Cl2 | −178.42 (14) |
C4—C3—C2—C1 | −1.0 (3) | C7—C4—C5—Cl2 | 1.2 (3) |
Cl1—C3—C2—C1 | −179.66 (15) | C3—C4—C7—N8 | 175.70 (19) |
C3—C2—C1—O1 | 179.66 (18) | C5—C4—C7—N8 | −3.9 (3) |
C3—C2—C1—C6 | 0.9 (3) | C4—C7—N8—N9 | 178.65 (17) |
O1—C1—C6—C5 | −179.08 (17) | C7—N8—N9—C10 | −178.35 (17) |
C2—C1—C6—C5 | −0.2 (3) | N8—N9—C10—N11 | −2.0 (3) |
C1—C6—C5—C4 | −0.4 (3) | N8—N9—C10—N12 | 177.47 (17) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O15i | 0.84 | 1.70 | 2.5336 (19) | 175 |
N9—H9···O16 | 0.88 | 1.91 | 2.730 (2) | 153 |
N11—H11A···O15ii | 0.88 | 2.04 | 2.900 (2) | 167 |
N12—H12A···O16ii | 0.88 | 1.96 | 2.828 (2) | 168 |
N12—H12B···O1iii | 0.88 | 2.05 | 2.868 (2) | 153 |
Symmetry codes: (i) −x+3/2, −y, z−1/2; (ii) −x+2, y+1/2, −z+3/2; (iii) x, −y+1/2, z+1/2. |
Experimental details
| (I) | (II) | (III) |
Crystal data |
Chemical formula | C8H8Cl2N4O·2H2O | C8H8Cl2N4O·2CH4O | C8H9Cl2N4O+·C2H3O2− |
Mr | 283.12 | 311.17 | 307.14 |
Crystal system, space group | Orthorhombic, Pbca | Triclinic, P1 | Orthorhombic, Pbca |
Temperature (K) | 90 | 90 | 90 |
a, b, c (Å) | 6.8802 (1), 16.7892 (4), 21.9240 (5) | 7.0255 (1), 10.0683 (2), 11.7580 (2) | 15.9630 (1), 7.4060 (2), 21.7930 (3) |
α, β, γ (°) | 90, 90, 90 | 112.3416 (8), 93.9597 (9), 107.4271 (9) | 90, 90, 90 |
V (Å3) | 2532.51 (9) | 718.02 (2) | 2576.41 (8) |
Z | 8 | 2 | 8 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.52 | 0.46 | 0.51 |
Crystal size (mm) | 0.40 × 0.10 × 0.03 | 0.40 × 0.30 × 0.20 | 0.40 × 0.20 × 0.10 |
|
Data collection |
Diffractometer | Nonius KappaCCD diffractometer | Nonius KappaCCD diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | Multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | Multi-scan (SCALEPACK; Otwinowski & Minor, 1997) |
Tmin, Tmax | 0.820, 0.985 | 0.837, 0.913 | 0.821, 0.950 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5390, 2898, 1692 | 6495, 3269, 2673 | 5505, 2952, 2375 |
Rint | 0.061 | 0.027 | 0.020 |
(sin θ/λ)max (Å−1) | 0.649 | 0.649 | 0.649 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.053, 0.142, 1.05 | 0.035, 0.095, 1.06 | 0.037, 0.100, 1.09 |
No. of reflections | 2898 | 3269 | 2952 |
No. of parameters | 167 | 176 | 174 |
No. of restraints | 6 | 0 | 0 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.66, −0.41 | 0.34, −0.33 | 0.38, −0.34 |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N9—H9···O2Wi | 0.88 | 1.99 | 2.863 (3) | 169.1 |
N11—H11A···O1Wii | 0.88 | 2.05 | 2.829 (3) | 146.8 |
N11—H11B···Cl2 | 0.88 | 2.96 | 3.817 (3) | 166.1 |
N12—H12A···O1Wii | 0.88 | 2.13 | 2.888 (3) | 143.4 |
N12—H12B···O1i | 0.88 | 1.98 | 2.854 (3) | 175.3 |
O1W—H1W1···O1 | 0.84 (2) | 1.96 (2) | 2.800 (3) | 178 (4) |
O1W—H2W1···O2Wiii | 0.80 (2) | 1.97 (2) | 2.751 (3) | 166 (3) |
O2W—H1W2···O1 | 0.82 (2) | 1.83 (2) | 2.616 (3) | 158 (3) |
O2W—H2W2···O1iii | 0.82 (2) | 2.00 (2) | 2.819 (3) | 171 (3) |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) −x+1, y−1/2, −z+3/2; (iii) x−1/2, −y+1/2, −z+1. |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
O15—H15···O1 | 0.84 | 1.83 | 2.6640 (18) | 170.6 |
O16—H16···O1 | 0.84 | 1.83 | 2.6464 (17) | 162.5 |
N9—H9···O15i | 0.88 | 2.02 | 2.8109 (18) | 148.9 |
N12—H12A···O1ii | 0.88 | 1.89 | 2.7665 (19) | 173.4 |
N12—H12B···O15i | 0.88 | 2.23 | 2.969 (2) | 142.1 |
N11—H11A···O16ii | 0.88 | 1.99 | 2.8596 (19) | 167.2 |
N11—H11B···O16iii | 0.88 | 2.57 | 3.1702 (19) | 126.6 |
Symmetry codes: (i) −x+2, −y+2, −z+1; (ii) x, y+1, z+1; (iii) −x+1, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) for (III) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O15i | 0.84 | 1.70 | 2.5336 (19) | 174.7 |
N9—H9···O16 | 0.88 | 1.91 | 2.730 (2) | 153.3 |
N11—H11A···O15ii | 0.88 | 2.04 | 2.900 (2) | 166.9 |
N12—H12A···O16ii | 0.88 | 1.96 | 2.828 (2) | 168.0 |
N12—H12B···O1iii | 0.88 | 2.05 | 2.868 (2) | 153.4 |
Symmetry codes: (i) −x+3/2, −y, z−1/2; (ii) −x+2, y+1/2, −z+3/2; (iii) x, −y+1/2, z+1/2. |
Subscribe to Acta Crystallographica Section C: Structural Chemistry
The full text of this article is available to subscribers to the journal.
If you have already registered and are using a computer listed in your registration details, please email
support@iucr.org for assistance.
Solvatomorphism, the counterpart of polymorphism and sometimes called pseudopolymorphism, deals with systems with different crystal structures of the same substance associated with various amounts or types of solvent molecules (Brittain, 2010; Seddon, 2004; Desiraju, 2004; Bernstein, 2005; Nangia, 2006). Unlike polymorphs, solvatomorphs not only have different molecular arrangements but also possess diverse molecular compositions due to the presence of solvent molecules. Like polymorphism, solvatomorphism is also commonly observed in organics and is of great significance in pharmaceuticals and materials. The title compound (1) is a metabolite of gaunabenz, an antiprion drug for the treatment of neurodegenerative disorders in mammals and also a potent tranquilizer used to sedate horses (Fluck et al. 1983). In this report, we describe three crystal structures of (1) which include two solvates, (I) and (II), and one acetate salt, (III) (Fig. 1).
Our analysis establishes that (I) is orthorhombic (space group Pbca) (Fig. 2), (II) is triclinic (space group P1) (Fig. 3) and (III) is again orthorhombic (space group Pbca) (Fig. 4), with one formula unit in the asymmetric unit in each case. In the water, (I), and methanol, (II), solvates, the title compound exists as a zwitterion with the phenol proton transferred to the guanidine N atom. In the acetate salt, (III), the title compound is protonated by the acetic acid and is thus positively charged. The molecules in the three forms are all in the E configuration and are nearly flat.
Without considering the participation of the solvent molecules, all three forms show the same C11 hydrogen-bonding pattern in the graph-set concept (Bernstein et al., 1995), i.e. one-dimensional chains based on the hydrogen bond between the phenol O and a guanidine NH [for example N12—H12B···O1i in (I); symmetry code: (i) x, -y + 1/2, z + 1/2] (Tables 1–3). The relative positions of the molecules in the chains differ, however, with molecules in the chain of (II) in the same plane, and molecules in the chains of (I) and (III) tilted toward each other to different degrees as indicated by the dihedral angles between the arene rings on adjacent molecules in the three forms: ca 22° for (I), 0° for (II) and 55° for (III) (Fig. 5).
Since compound (1) is associated with different guest molecules in the three forms, the packing is distinct in each case because of different hydrogen-bonding patterns. In (I), there are two equivalents of water, and water is both a hydrogen-bond donor and acceptor (Fig. 6). When acting as a hydrogen-bond donor, one H2O (O1W) forms hydrogen bonds with both O1 of the host molecule and O2W of the other water molecule [O1W—H2W1···O2Wiii; symmetry code: (iii) x - 1/2, -y + 1/2, -z + 1] (Table 1); while serving as a hydrogen-bond acceptor, O1W accepts H atoms from both N11 and N12 from the guanine group of the host molecule [N11—H11A···O1Wii and N12—H12A···O1Wii; symmetry code: (ii) -x + 1, y - 1/2, -z + 3/2]. When the second H2O (O2W) acts as a hydrogen-bond donor, it links two adjacent host molecule chains through hydrogen bonds with O1; when it works as a hydrogen-bond acceptor, it forms hydrogen bonds with the other water molecule and N9—H9 of the host molecule (N9—H9···O2Wi).
Form (II) also contains two equivalents of another solvent molecule, methanol. The O—H of methanol similarly participates in hydrogen bonds as both a donor and acceptor (Fig. 7). The first methanol molecule connects two adjacent chains by using the O15—H15 group as a hydrogen-bond donor to O1 of the host molecule from one chain and meanwhile utilizing O15 as a hydrogen-bond acceptor to accept H atoms from both N9 and N12 of the host molecule from another chain [N9—H9..O15i and N12—H12B···O15i; symmetry code: (i) -x + 2, -y + 2, -z + 1] (Table 2). The second methanol molecule forms hydrogen bonds with O1 as a donor and N11 as an acceptor N11—H11A···O16ii; symmetry code: (ii) x, y + 1, z + 1].
As a 1:1 organic acetate salt in (III), compound (1) is protonated. Both O atoms of the acetate act as hydrogen-bond acceptors (Fig. 8). O15 accepts hydrogen bonds from O1 and N11 from different cations [O1—H1···O15i and N11—H11A···O15ii; symmetry codes: (i) -x + 3/2, -y, z - 1/2; (ii) -x + 2, y + 1/2, -z + 3/2] and O16 also accepts hydrogen bonds from N9 and N12 of two different cations (N9—H9···O16 and N12—H12A···O16ii). Thus, one acetate anion bridges three chains through hydrogen bonding with one cation in each chain.
Attempts were made to obtain good-quality crystals of an unsolvated and/or a neutral form of the title compound without success. A Cambridge Structural Database (CSD; version 5.32; Allen, 2002) search resulted in six structurally related hits. None was found to form multiple solvates though. Among them, the complex chloro-(β-resorcylidene aminoguanidine)-copper(II) tetrahydrate [refcode RIYMIV (Onuska et al., 1996)] is similar to (III) with the O protonated and a hydrogen bond existing between the O and the guanine N leading to one-dimensional chains. In N-(2,4-dimethoxybenzylideneamino)guanidinium dihydrogenphosphate [refcode DAYHOB (Dinçer et al., 2005)], 7-amino-5-(p-tolyl)-4-phenyl-2- (p-methoxyphenyl)-3,4-dihydroimidazo(1,5-b)pyridazine [refcode LORRAL (Kolos et al., 1999)], 2,4,6-trimethoxybenzylidene-aminoguanidinium chloride [refcode MELBIO (Bats & Hoffmann, 2000)] and (4-methoxy-3-nitrobenzylideneamino)guanidinium chloride [refcode RIGKOI (Ring et al., 2007)], the corresponding O is methylated. The chain structure is replaced by a dimer based on two hydrogen bonds between methoxyl O and guanine N [R22(22)] in DAYHOB, and no hydrogen bonds form between the corresponding atoms in the other three compounds. In 2-methyl-4-hydroxybenzaldehyde 2-imidazolin-2-yl-hydrazone hydrochloride monohydrate [refcode FAJHED (Atfani et al., 1986)], the O atom is protonated as in (III), and the two N atoms in the guanine group are integrated into a five-membered ring. Still, a one-dimensional chain similar to that in (III) is observed. Thus, it seems this hydrogen-bonding motif is a common observation in (E)-2-(4-hydroxybenzylidene)hydrazinecarboximidamides likely due to the relatively high strength of the N—H···O interaction.
Our work has thus shown that compound (1) can form at least two solvated crystalline forms and salt formation with acids should be expected as indicated by the existence of an acetate salt. Owing to the presence of different solvents or acids, the crystals have diverse packing and hydrogen-bond arrangements.