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The title compounds, 1,3-dibenzoylimidazolidine-2-thione, C
17H
14N
2O
2S, (I), and 1,3-dibenzoyl-3,4,5,6-tetrahydropyrimidine-2(1
H)-thione, C
18H
16N
2O
2S, (II), were obtained from the reactions of imidazolidine-2-thione and 1,4,5,6-tetrahydropyrimidine-2-thiol, respectively, with benzoyl chloride. Compounds (I) and (II) contain, respectively, imidazolidinethione [C=S = 1.6509 (14) Å] and pyrimidinethione [C=S = 1.6918 (19) Å] moieties bonded to two benzoyl rings. The molecules of (I) exhibit
C2 symmetry, the C=S bond lying along the twofold rotation axis, while the molecules of (II) have mirror symmetry (
Cs). The imidazolidine ring in (I) is essentially planar, while the pyrimidine ring in (II) adopts a boat conformation. Molecules of (I) are linked by weak intermolecular C-H
O interactions, while molecules of (II) are held together by van der Waals interactions.
Supporting information
CCDC references: 275515; 275516
Triethylamine (TEA, 2.02 g, 20 mmol) was added to a solution of 4,5-dihydroimidazole-2(3H)-thione (1.02 g, 10 mmol) dissolved in THF (100 ml) with stirring on an ice bath for 30 min. Benzoyl chloride (2.81 g, 20 mmol) was added to the reaction mixture dropwise and it was refluxed for 4 h. The resulting solution was evaporated under vacuum to half the volume and then poured into ice water to precipitate. The residue was filtered off and single crystals of (I) suitable for X-ray measurements were obtained by crystallization from acetone. The procedure and molar quantities of the reactants for the preparation of (II) were the same as for (I), with 1,4,5,6-tetrahydropyrimidine-2-thiole replacing 4,5-dihydroimidazole-2(3H)-thione.
All H atoms were refined with a riding model [C—H = 0.95 and 0.99 Å, and Uiso(H) = 1.2 Ueq(C)].
For both compounds, data collection: COLLECT (Bruker, 2002); cell refinement: EVALCCD (Bruker, 2002); data reduction: EVALCCD; program(s) used to solve structure: SHELXTL (Bruker, 2002); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
(I) 1,3-Dibenzoyl-4,5-dihydro-1
H-imidazole-2(3
H)-thione
top
Crystal data top
C17H14N2O2S | F(000) = 324 |
Mr = 310.36 | Dx = 1.429 Mg m−3 |
Orthorhombic, P21212 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2 2ab | Cell parameters from 128 reflections |
a = 11.8543 (8) Å | θ = 6.0–20.0° |
b = 5.7221 (2) Å | µ = 0.23 mm−1 |
c = 10.6312 (6) Å | T = 100 K |
V = 721.13 (7) Å3 | Prism, yellow |
Z = 2 | 0.37 × 0.16 × 0.12 mm |
Data collection top
Nonius KappaCCD diffractometer | 1864 independent reflections |
Radiation source: fine-focus sealed tube | 1772 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
Detector resolution: 9 pixels mm-1 | θmax = 28.7°, θmin = 3.4° |
ϕ and ω scans with 2.0° and 80 s per frame | h = −16→16 |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | k = −7→7 |
Tmin = 0.925, Tmax = 0.967 | l = −14→14 |
21502 measured reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.024 | H-atom parameters constrained |
wR(F2) = 0.059 | w = 1/[σ2(Fo2) + (0.0278P)2 + 0.1874P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
1864 reflections | Δρmax = 0.26 e Å−3 |
101 parameters | Δρmin = −0.19 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 757 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.03 (6) |
Crystal data top
C17H14N2O2S | V = 721.13 (7) Å3 |
Mr = 310.36 | Z = 2 |
Orthorhombic, P21212 | Mo Kα radiation |
a = 11.8543 (8) Å | µ = 0.23 mm−1 |
b = 5.7221 (2) Å | T = 100 K |
c = 10.6312 (6) Å | 0.37 × 0.16 × 0.12 mm |
Data collection top
Nonius KappaCCD diffractometer | 1864 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | 1772 reflections with I > 2σ(I) |
Tmin = 0.925, Tmax = 0.967 | Rint = 0.029 |
21502 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.024 | H-atom parameters constrained |
wR(F2) = 0.059 | Δρmax = 0.26 e Å−3 |
S = 1.09 | Δρmin = −0.19 e Å−3 |
1864 reflections | Absolute structure: Flack (1983), 757 Friedel pairs |
101 parameters | Absolute structure parameter: −0.03 (6) |
1 restraint | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.5000 | 1.0000 | 0.68869 (3) | 0.01560 (10) | |
O1 | 0.35542 (8) | 0.50573 (19) | 0.94793 (8) | 0.02187 (19) | |
N1 | 0.43482 (8) | 0.86246 (17) | 0.92143 (9) | 0.0134 (2) | |
C1 | 0.22621 (9) | 0.93431 (19) | 0.76869 (11) | 0.0141 (2) | |
H1A | 0.2426 | 1.0572 | 0.8259 | 0.017* | |
C2 | 0.14397 (9) | 0.9638 (2) | 0.67731 (11) | 0.0158 (2) | |
H2A | 0.1023 | 1.1054 | 0.6733 | 0.019* | |
C3 | 0.12244 (10) | 0.7855 (2) | 0.59125 (12) | 0.0165 (2) | |
H3A | 0.0667 | 0.8068 | 0.5281 | 0.020* | |
C4 | 0.18194 (11) | 0.5772 (2) | 0.59733 (12) | 0.0173 (2) | |
H4A | 0.1678 | 0.4572 | 0.5376 | 0.021* | |
C5 | 0.26257 (10) | 0.54389 (19) | 0.69133 (11) | 0.0159 (2) | |
H5A | 0.3021 | 0.3999 | 0.6973 | 0.019* | |
C6 | 0.28466 (9) | 0.7233 (2) | 0.77616 (11) | 0.0131 (2) | |
C7 | 0.36160 (10) | 0.6815 (2) | 0.88443 (11) | 0.0144 (2) | |
C8 | 0.5000 | 1.0000 | 0.84393 (13) | 0.0121 (3) | |
C9 | 0.47107 (10) | 0.8805 (2) | 1.05407 (11) | 0.0157 (2) | |
H9A | 0.5243 | 0.7541 | 1.0768 | 0.019* | |
H9B | 0.4058 | 0.8772 | 1.1122 | 0.019* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.01409 (17) | 0.02380 (19) | 0.00891 (16) | −0.00350 (16) | 0.000 | 0.000 |
O1 | 0.0273 (4) | 0.0177 (4) | 0.0206 (4) | −0.0021 (4) | −0.0026 (3) | 0.0066 (4) |
N1 | 0.0143 (5) | 0.0162 (5) | 0.0096 (4) | 0.0004 (4) | 0.0001 (4) | 0.0014 (4) |
C1 | 0.0124 (5) | 0.0145 (5) | 0.0153 (5) | −0.0006 (4) | 0.0034 (4) | −0.0019 (4) |
C2 | 0.0124 (5) | 0.0155 (6) | 0.0196 (5) | 0.0010 (4) | 0.0015 (4) | −0.0003 (5) |
C3 | 0.0121 (5) | 0.0203 (6) | 0.0172 (6) | −0.0026 (4) | −0.0001 (4) | 0.0004 (5) |
C4 | 0.0173 (5) | 0.0173 (5) | 0.0174 (5) | −0.0044 (4) | 0.0018 (4) | −0.0036 (5) |
C5 | 0.0168 (5) | 0.0127 (5) | 0.0182 (5) | −0.0001 (4) | 0.0031 (4) | 0.0006 (5) |
C6 | 0.0118 (5) | 0.0146 (5) | 0.0131 (5) | −0.0017 (4) | 0.0020 (4) | 0.0014 (4) |
C7 | 0.0138 (5) | 0.0144 (5) | 0.0151 (5) | 0.0018 (4) | 0.0030 (4) | −0.0006 (4) |
C8 | 0.0103 (6) | 0.0139 (6) | 0.0121 (5) | 0.0028 (6) | 0.000 | 0.000 |
C9 | 0.0199 (6) | 0.0181 (6) | 0.0092 (5) | 0.0013 (5) | −0.0003 (4) | 0.0007 (4) |
Geometric parameters (Å, º) top
N1—C7 | 1.4073 (15) | C3—C4 | 1.3864 (17) |
N1—C8 | 1.3766 (13) | C3—H3A | 0.9500 |
N1—C9 | 1.4777 (15) | C4—C5 | 1.3959 (17) |
O1—C7 | 1.2135 (16) | C4—H4A | 0.9500 |
S1—C8 | 1.6504 (14) | C5—C6 | 1.3915 (16) |
C1—C2 | 1.3866 (16) | C5—H5A | 0.9500 |
C1—C6 | 1.3942 (15) | C6—C7 | 1.4879 (17) |
C1—H1A | 0.9500 | C9—C9i | 1.530 (2) |
C2—C3 | 1.3940 (17) | C9—H9A | 0.9900 |
C2—H2A | 0.9500 | C9—H9B | 0.9900 |
| | | |
C7—N1—C9 | 119.83 (9) | C4—C5—H5A | 120.3 |
C8—N1—C7 | 126.84 (10) | C5—C6—C1 | 120.56 (11) |
C8—N1—C9 | 111.59 (9) | C5—C6—C7 | 119.87 (10) |
C2—C1—C6 | 119.64 (11) | C1—C6—C7 | 119.21 (10) |
C2—C1—H1A | 120.2 | O1—C7—N1 | 119.45 (11) |
C6—C1—H1A | 120.2 | O1—C7—C6 | 121.78 (11) |
C1—C2—C3 | 119.97 (11) | N1—C7—C6 | 118.42 (10) |
C1—C2—H2A | 120.0 | N1i—C8—N1 | 106.48 (13) |
C3—C2—H2A | 120.0 | N1i—C8—S1 | 126.76 (6) |
C4—C3—C2 | 120.36 (11) | N1—C8—S1 | 126.76 (6) |
C4—C3—H3A | 119.8 | N1—C9—C9i | 101.11 (6) |
C2—C3—H3A | 119.8 | N1—C9—H9A | 111.5 |
C3—C4—C5 | 119.93 (11) | C9i—C9—H9A | 111.5 |
C3—C4—H4A | 120.0 | N1—C9—H9B | 111.5 |
C5—C4—H4A | 120.0 | C9i—C9—H9B | 111.5 |
C6—C5—C4 | 119.49 (10) | H9A—C9—H9B | 109.4 |
C6—C5—H5A | 120.3 | | |
| | | |
C6—C1—C2—C3 | −1.87 (17) | C9—N1—C7—C6 | 151.18 (10) |
C1—C2—C3—C4 | 0.76 (17) | C5—C6—C7—O1 | −44.62 (17) |
C2—C3—C4—C5 | 1.07 (18) | C1—C6—C7—O1 | 128.55 (12) |
C3—C4—C5—C6 | −1.76 (18) | C5—C6—C7—N1 | 142.26 (11) |
C4—C5—C6—C1 | 0.65 (17) | C1—C6—C7—N1 | −44.56 (15) |
C4—C5—C6—C7 | 173.73 (11) | C7—N1—C8—N1i | −174.60 (13) |
C2—C1—C6—C5 | 1.17 (17) | C9—N1—C8—N1i | −9.82 (6) |
C2—C1—C6—C7 | −171.95 (10) | C7—N1—C8—S1 | 5.40 (13) |
C8—N1—C7—O1 | 141.55 (10) | C9—N1—C8—S1 | 170.18 (6) |
C9—N1—C7—O1 | −22.10 (17) | C8—N1—C9—C9i | 23.99 (13) |
C8—N1—C7—C6 | −45.17 (15) | C7—N1—C9—C9i | −170.02 (11) |
Symmetry code: (i) −x+1, −y+2, z. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9A···O1ii | 0.99 | 2.47 | 3.2231 (16) | 132 |
Symmetry code: (ii) −x+1, −y+1, z. |
(II) 1,3-Dibenzoyl-3,4,5,6-tetrahydropyrimidine-2(1
H)-thione
top
Crystal data top
C18H16N2O2S | F(000) = 680 |
Mr = 324.39 | Dx = 1.382 Mg m−3 |
Orthorhombic, Pnma | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2n | Cell parameters from 150 reflections |
a = 8.6803 (6) Å | θ = 6.0–20.0° |
b = 21.946 (1) Å | µ = 0.22 mm−1 |
c = 8.1845 (9) Å | T = 100 K |
V = 1559.1 (2) Å3 | Irregular, colorless |
Z = 4 | 0.23 × 0.23 × 0.16 mm |
Data collection top
Nonius KappaCCD diffractometer | 2051 independent reflections |
Radiation source: fine-focus sealed tube | 1707 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
Detector resolution: 9 pixels mm-1 | θmax = 28.7°, θmin = 3.4° |
ϕ and ω scans with 1.4° and 126 s per frame | h = −11→11 |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | k = −24→29 |
Tmin = 0.941, Tmax = 0.972 | l = −11→11 |
22525 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.095 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0438P)2 + 0.7208P] where P = (Fo2 + 2Fc2)/3 |
2051 reflections | (Δ/σ)max = 0.001 |
109 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
Crystal data top
C18H16N2O2S | V = 1559.1 (2) Å3 |
Mr = 324.39 | Z = 4 |
Orthorhombic, Pnma | Mo Kα radiation |
a = 8.6803 (6) Å | µ = 0.22 mm−1 |
b = 21.946 (1) Å | T = 100 K |
c = 8.1845 (9) Å | 0.23 × 0.23 × 0.16 mm |
Data collection top
Nonius KappaCCD diffractometer | 2051 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | 1707 reflections with I > 2σ(I) |
Tmin = 0.941, Tmax = 0.972 | Rint = 0.040 |
22525 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.095 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.32 e Å−3 |
2051 reflections | Δρmin = −0.28 e Å−3 |
109 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.03972 (5) | 0.7500 | 0.05041 (6) | 0.01700 (13) | |
O1 | 0.18277 (15) | 0.61397 (5) | −0.15616 (13) | 0.0334 (3) | |
N1 | 0.30041 (13) | 0.69748 (5) | −0.04365 (13) | 0.0183 (2) | |
C1 | 0.27306 (16) | 0.63935 (7) | 0.26952 (17) | 0.0211 (3) | |
H1A | 0.3281 | 0.6765 | 0.2588 | 0.025* | |
C2 | 0.26144 (18) | 0.61116 (8) | 0.42084 (18) | 0.0302 (4) | |
H2A | 0.3088 | 0.6291 | 0.5138 | 0.036* | |
C3 | 0.1815 (2) | 0.55730 (8) | 0.4367 (2) | 0.0378 (4) | |
H3A | 0.1729 | 0.5385 | 0.5408 | 0.045* | |
C4 | 0.1137 (2) | 0.53055 (8) | 0.3019 (2) | 0.0398 (5) | |
H4A | 0.0598 | 0.4931 | 0.3135 | 0.048* | |
C5 | 0.12401 (18) | 0.55813 (7) | 0.1492 (2) | 0.0274 (3) | |
H5A | 0.0771 | 0.5398 | 0.0566 | 0.033* | |
C6 | 0.20375 (15) | 0.61295 (6) | 0.13345 (16) | 0.0177 (3) | |
C7 | 0.21906 (16) | 0.63974 (6) | −0.03214 (16) | 0.0192 (3) | |
C8 | 0.2246 (2) | 0.7500 | −0.0151 (2) | 0.0157 (4) | |
C9 | 0.45417 (16) | 0.69417 (7) | −0.12014 (19) | 0.0257 (3) | |
H9A | 0.4435 | 0.6920 | −0.2404 | 0.031* | |
H9B | 0.5085 | 0.6571 | −0.0825 | 0.031* | |
C10 | 0.5456 (2) | 0.7500 | −0.0738 (3) | 0.0266 (5) | |
H10A | 0.6457 | 0.7500 | −0.1317 | 0.032* | |
H10B | 0.5659 | 0.7500 | 0.0452 | 0.032* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0152 (2) | 0.0180 (2) | 0.0179 (2) | 0.000 | 0.00326 (17) | 0.000 |
O1 | 0.0498 (7) | 0.0282 (6) | 0.0221 (6) | 0.0020 (5) | −0.0116 (5) | −0.0064 (4) |
N1 | 0.0172 (5) | 0.0197 (6) | 0.0179 (5) | 0.0024 (4) | 0.0043 (4) | 0.0013 (4) |
C1 | 0.0194 (6) | 0.0248 (7) | 0.0191 (6) | 0.0018 (5) | −0.0006 (5) | 0.0012 (5) |
C2 | 0.0272 (8) | 0.0447 (10) | 0.0188 (7) | 0.0115 (7) | 0.0016 (6) | 0.0061 (7) |
C3 | 0.0376 (9) | 0.0412 (10) | 0.0345 (9) | 0.0170 (8) | 0.0159 (7) | 0.0198 (8) |
C4 | 0.0354 (9) | 0.0226 (8) | 0.0614 (12) | 0.0027 (7) | 0.0191 (8) | 0.0148 (8) |
C5 | 0.0239 (7) | 0.0187 (7) | 0.0398 (9) | 0.0006 (6) | 0.0026 (6) | −0.0020 (6) |
C6 | 0.0152 (6) | 0.0170 (6) | 0.0209 (6) | 0.0038 (5) | 0.0005 (5) | 0.0009 (5) |
C7 | 0.0210 (6) | 0.0168 (6) | 0.0197 (6) | 0.0043 (5) | −0.0035 (5) | −0.0017 (5) |
C8 | 0.0176 (8) | 0.0190 (9) | 0.0104 (8) | 0.000 | 0.0006 (7) | 0.000 |
C9 | 0.0190 (7) | 0.0310 (8) | 0.0271 (7) | 0.0061 (6) | 0.0066 (6) | −0.0019 (6) |
C10 | 0.0159 (9) | 0.0409 (12) | 0.0231 (10) | 0.000 | 0.0017 (8) | 0.000 |
Geometric parameters (Å, º) top
N1—C7 | 1.4537 (18) | C3—H3A | 0.9500 |
N1—C8 | 1.3478 (15) | C4—C5 | 1.391 (2) |
N1—C9 | 1.4760 (17) | C4—H4A | 0.9500 |
O1—C7 | 1.2039 (17) | C5—C6 | 1.394 (2) |
S1—C8 | 1.6918 (19) | C5—H5A | 0.9500 |
C1—C2 | 1.388 (2) | C6—C7 | 1.4832 (19) |
C1—C6 | 1.3920 (19) | C9—C10 | 1.5082 (19) |
C1—H1A | 0.9500 | C9—H9A | 0.9900 |
C2—C3 | 1.377 (3) | C9—H9B | 0.9900 |
C2—H2A | 0.9500 | C10—H10A | 0.9900 |
C3—C4 | 1.381 (3) | C10—H10B | 0.9900 |
| | | |
C7—N1—C9 | 115.08 (11) | C1—C6—C7 | 121.82 (13) |
C8—N1—C7 | 119.80 (12) | C5—C6—C7 | 118.11 (13) |
C8—N1—C9 | 123.87 (12) | O1—C7—N1 | 118.82 (13) |
C2—C1—C6 | 119.79 (14) | O1—C7—C6 | 124.10 (13) |
C2—C1—H1A | 120.1 | N1—C7—C6 | 116.63 (11) |
C6—C1—H1A | 120.1 | N1i—C8—N1 | 117.56 (16) |
C3—C2—C1 | 120.21 (16) | N1—C8—S1 | 121.21 (8) |
C3—C2—H2A | 119.9 | N1—C9—C10 | 109.21 (13) |
C1—C2—H2A | 119.9 | N1—C9—H9A | 109.8 |
C2—C3—C4 | 120.30 (15) | C10—C9—H9A | 109.8 |
C2—C3—H3A | 119.8 | N1—C9—H9B | 109.8 |
C4—C3—H3A | 119.8 | C10—C9—H9B | 109.8 |
C3—C4—C5 | 120.32 (15) | H9A—C9—H9B | 108.3 |
C3—C4—H4A | 119.8 | C9—C10—C9i | 108.66 (17) |
C5—C4—H4A | 119.8 | C9—C10—H10A | 110.0 |
C4—C5—C6 | 119.38 (15) | C9i—C10—H10A | 110.0 |
C4—C5—H5A | 120.3 | C9—C10—H10B | 110.0 |
C6—C5—H5A | 120.3 | C9i—C10—H10B | 110.0 |
C1—C6—C5 | 119.98 (13) | H10A—C10—H10B | 108.3 |
| | | |
C6—C1—C2—C3 | −0.1 (2) | C1—C6—C7—O1 | 167.71 (14) |
C1—C2—C3—C4 | 0.7 (2) | C5—C6—C7—O1 | −8.9 (2) |
C2—C3—C4—C5 | −0.8 (2) | C1—C6—C7—N1 | −4.47 (19) |
C3—C4—C5—C6 | 0.2 (2) | C5—C6—C7—N1 | 178.89 (12) |
C2—C1—C6—C5 | −0.5 (2) | C7—N1—C8—N1i | −173.28 (10) |
C2—C1—C6—C7 | −177.07 (13) | C9—N1—C8—N1i | −6.7 (2) |
C4—C5—C6—C1 | 0.5 (2) | C7—N1—C8—S1 | 5.5 (2) |
C4—C5—C6—C7 | 177.16 (13) | C9—N1—C8—S1 | 172.02 (11) |
C8—N1—C7—O1 | 103.75 (17) | C8—N1—C9—C10 | 32.02 (19) |
C9—N1—C7—O1 | −63.95 (17) | C7—N1—C9—C10 | −160.84 (12) |
C8—N1—C7—C6 | −83.64 (16) | N1—C9—C10—C9i | −54.9 (2) |
C9—N1—C7—C6 | 108.66 (13) | | |
Symmetry code: (i) x, −y+3/2, z. |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | C17H14N2O2S | C18H16N2O2S |
Mr | 310.36 | 324.39 |
Crystal system, space group | Orthorhombic, P21212 | Orthorhombic, Pnma |
Temperature (K) | 100 | 100 |
a, b, c (Å) | 11.8543 (8), 5.7221 (2), 10.6312 (6) | 8.6803 (6), 21.946 (1), 8.1845 (9) |
V (Å3) | 721.13 (7) | 1559.1 (2) |
Z | 2 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.23 | 0.22 |
Crystal size (mm) | 0.37 × 0.16 × 0.12 | 0.23 × 0.23 × 0.16 |
|
Data collection |
Diffractometer | Nonius KappaCCD diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2002) | Multi-scan (SADABS; Bruker, 2002) |
Tmin, Tmax | 0.925, 0.967 | 0.941, 0.972 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21502, 1864, 1772 | 22525, 2051, 1707 |
Rint | 0.029 | 0.040 |
(sin θ/λ)max (Å−1) | 0.675 | 0.675 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.024, 0.059, 1.09 | 0.038, 0.095, 1.09 |
No. of reflections | 1864 | 2051 |
No. of parameters | 101 | 109 |
No. of restraints | 1 | 0 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.26, −0.19 | 0.32, −0.28 |
Absolute structure | Flack (1983), 757 Friedel pairs | ? |
Absolute structure parameter | −0.03 (6) | ? |
Selected geometric parameters (Å, º) for (I) topN1—C7 | 1.4073 (15) | O1—C7 | 1.2135 (16) |
N1—C8 | 1.3766 (13) | S1—C8 | 1.6504 (14) |
N1—C9 | 1.4777 (15) | C9—C9i | 1.530 (2) |
| | | |
C7—N1—C9 | 119.83 (9) | N1i—C8—N1 | 106.48 (13) |
C8—N1—C7 | 126.84 (10) | N1—C8—S1 | 126.76 (6) |
C8—N1—C9 | 111.59 (9) | | |
| | | |
C9—N1—C8—N1i | −9.82 (6) | C8—N1—C9—C9i | 23.99 (13) |
C9—N1—C8—S1 | 170.18 (6) | C7—N1—C9—C9i | −170.02 (11) |
Symmetry code: (i) −x+1, −y+2, z. |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9A···O1ii | 0.99 | 2.47 | 3.2231 (16) | 132 |
Symmetry code: (ii) −x+1, −y+1, z. |
Selected geometric parameters (Å, º) for (II) topN1—C7 | 1.4537 (18) | O1—C7 | 1.2039 (17) |
N1—C8 | 1.3478 (15) | S1—C8 | 1.6918 (19) |
N1—C9 | 1.4760 (17) | C9—C10 | 1.5082 (19) |
| | | |
C7—N1—C9 | 115.08 (11) | N1i—C8—N1 | 117.56 (16) |
C8—N1—C7 | 119.80 (12) | N1—C8—S1 | 121.21 (8) |
C8—N1—C9 | 123.87 (12) | | |
| | | |
C7—N1—C8—N1i | −173.28 (10) | C8—N1—C9—C10 | 32.02 (19) |
C9—N1—C8—N1i | −6.7 (2) | N1—C9—C10—C9i | −54.9 (2) |
C9—N1—C8—S1 | 172.02 (11) | | |
Symmetry code: (i) x, −y+3/2, z. |
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Heterocyclic thioamides usually occurring in their thioketo form are referred to as `thiones'. Heterocyclic thiones have a wide range of applications as analytical reagents, as metal corrosion inhibitors and in the pharmaceutical field (Hussain et al., 1990). These compounds are of particular interest in coordination chemistry because they display both hard and soft donor sites. In many instances, heterocyclic thiones behave as polyfunctional ligands with monodentate, chelating and bridging coordination modes and form a wide range transition metal complexes, many of which have important chemical and biological properties (Raper, 1985, 1994, 1996, 1997; Akrivos, 2001). Furthermore, metal complexes of heterocyclic thiones exhibit interesting anticarcinogenic properties (Reedijk, 1992; van Boom & Reedijk, 1993; Barnham et al., 1994) and are used in the treatment of rheumatoid arthritis (Haynes & Whitehouse, 1989). Such complexes? are also used as models to understand the electronic and structural properties of the active sites in metalloenzymes (Casella et al., 1988; Gullotti, et al., 1989) and metal–DNA interactions (Tran Qui & Bagieu, 1990). In the course of synthesizing new ligands suitable for coordination chemistry, we prepared two new heterocyclic thiones, namely 1,3-dibenzoyl-4,5-dihydro-1H-imidazole-2-thione, C17H14N2O2S, (I), and 1,3-dibenzoyl-3,4,5,6-tetrahydropyrimidine-2(1H)-thione, C18H16N2O2S, (II), from the reactions of 4,5-dihydroimidazole-2(3H)-thione and 1,4,5,6-tetrahydropyrimidine-2-thiol, respectively, with benzoyl chloride.
Views of the molecules of (I) and (II), including the atom-numbering schemes, are shown in Figs. 1 and 2. Selected bond distances and angles are listed in Tables 1 and 2. Each compound exhibits a soft thione S donor and three hard donor sites (a carbonyl O and two N atoms) and seems to act as a chelating or a bridging ligand. These compounds are also interesting building blocks for generating coordination polymers upon metal complexation. Both (I) and (II) consist of thioimidazole and thiopyrimidine moieties bonded to two benzoyl rings. The thio substituents exist in the thione form. The C—S bond lengths in (I) and (II) are consistent with a double bond and are similar to those in other reported heterocyclic thione derivatives containing thioimidazole and thiopyrimidine cycles (Ozbey et al., 1991; Akkurt et al., 1992, 2000; Cox et al., 1996; Liu et al., 2003; Ozcelik et al., 2004; Brito et al., 2004). The C8—N1 bond distances in both compounds are intermediate between standard single C—N (1.47 Å) and double C═N (1.28 Å) bonds, being significantly shorter than the C9—N1 bonds, because atom C8 is in an sp2 hybridized state, while atom C9 is sp3. The remaining bond lengths in both compounds show no unusual values.
The molecules of (I) show C2 symmetry, and the C8—S1 bond lies on the twofold rotation axis, while the molecules of (II) have mirror symmetry (Cs), with atoms S1, C8, C10, H10A and H10B situated on the mirror plane. The five-membered imidazole ring in (I) is essentially planar, with maximum deviations from the mean plane of −0.1418 (8) and 0.1397 (8) Å for atoms N1 and C9i [symmetry code: (i) 1 − x, 2 − y, z], respectively. The six-membered pyrimidine ring in (II) adopts a half-boat conformation, in which atoms C8 and C10 are displaced from the mean plane by 0.0387 (10) and 0.2561 (13) Å. The benzoyl rings in (I) make dihedral angles of 76.55 (3) and 79.85 (3)° with the mean plane of the imidazole ring. The dihedral angles between the two planar benzoyl fragments are 75.92 (3)° in (I) and 61.08 (4)° in (II). A non-planar disposition of the three rings in both compounds has been observed in other reported heterocyclic thione derivatives with similar fragments (Ozbey et al., 1991; Cox et al., 1996; Akkurt et al., 2000; Ozcelik et al., 2004).
The packing of the molecules in (I) and (II) is shown in Figs. 3 and 4. The molecules of (I) are linked by means of weak intermolecular C—H···O interactions (Table 1). Although there are no π···π stacking interactions in (II), the molecules are approximately paired, the two phenyl rings overlapping, forming channels running parallel to the a axis as shown in Fig 4. Examination of the structures with PLATON (Spek, 2003) indicates that there are no solvent-accesible voids in (I) and (II).