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An interesting case of `halogen-bonding-promoted' crystal structure architecture is presented. The two title compounds, C
8H
8Br
2O
2 and C
8H
8I
2O
2, have almost indistinguishable molecular structures but very different spatial organization, and this is mainly due to differences in the halogen-bonding interactions in which the different species present,
i.e. Br and I, take part. The dibromo structure exhibits a
-bonded columnar array involving all four independent molecules in the asymmetric unit, with intercolumnar interactions governed by C-Br
Br-C links and with no C-Br
O/N interactions present. In the diiodo structure, instead, the C-I
O synthon prevails, defining linear chains, in turn interlinked by C-I
I-C interactions.
Supporting information
CCDC references: 710755; 710756
Both compounds were prepared by direct halogenation of dimethoxybenzene, using
Br2 and ICl for the dibromo and diiodo compounds, respectively.
For the synthesis of (I), in a three-necked 250 ml flask equipped with a
thermometer and a pressure-compensated addition funnel were placed veratrole
(10.141 g) and dichloromethane (125 ml) with a magnetic stirring bar. The
flask was placed in an ice-bath, and while the mixture cooled to 278 K, a hose
with a funnel was attached to the remaining neck. The funnel was carefully
placed facing down just over the surface of an Na2CO3 solution, in such a
way that the acid vapours generated would be neutralized by the carbonate. A
solution of Br2 (8 ml) in CH2Cl2 (20 ml) was loaded on the addition
funnel and added dropwise with continuous stirring for a period of 1 h. The
ice-bath was removed and the solution was stirred overnight. The contents of
the flask were carefully poured into a separation funnel containing a solution
of sodium bisulphite. The organic phase was washed with water, Na2CO3 and
water again, dried over MgSO4, and evaporated. The crude product was
recrystallized from ethanol until no traces of the monobrominated product were
detected by thin-layer chromatography, yielding 20.96 g (96%) of white
[colourless according to CIF] crystals (m.p. 362–364 K).
The diiodo compound was prepared in a similar fashion to the brominated
analogue. Namely, veratrole (9.106 g), dichloromethane (125 ml) and a magnetic
stirring bar were placed in a 250 ml three-necked flask. The mixture was
cooled to 278 K using an ice-bath, and a pressure-compensated addition funnel
and a system for the evacuation of the generated acidic vapours similar to
that used in the synthesis of the dibromo compound were attached to the flask.
A solution of ICl (22.5 g) in CH2Cl2 (20 ml) was loaded into the addition
funnel and then added slowly dropwise (0.2 ml min-1), with continuous
stirring. The cold bath was removed, and after 1 h of stirring at room
temperature, the solution was poured into a separation funnel containing
sodium bisulphite. The organic phase was separated, washed with water,
Na2CO3 and then water again, and dried over MgSO4. The solvent was
evaporated and the purple tar obtained was passed quickly through a fritted
disc funnel filled with a short column of silica, eluting with a mixture of
dichloromethane and cyclohexane. The almost colourless solution was evaporated
and the white solid was recrystallized several times from ethanol, yielding
18.22 g (70.9%) of white needles [colourless blocks according to CIF] (m.p. 404–405 K).
Crystals of both compounds were obtained by slow evaporation of an ethanol
solution of the corresponding dihalodimethoxybenzene. Depending on the speed
of evaporation, crystals with dimensions ranging from less than a millimeter
up to a centimeter were obtained. Both compounds showed 1H NMR spectra
consistent on two singlets, one corresponding to the aromatic H atoms (at 7.06
and 7.23 p.p.m. for the dibromo and diiodo compounds) and one corresponding to
the methoxy H atoms at 3.83 p.p.m. Elemental analysis: expected (calculated)
for C8H8O2Br2: C 32.6 (32.47), H 2.7 (2.72)%; for C8H8O2I2: C
24.8 (24.64), H 2.1 (2.07)%.
H atoms were placed at calculated positions [C—H = 0.93 Å (aromatic) and
0.96 Å (methyl)] and allowed to ride; methyl groups were allowed to rotate
as well. Uiso(H) values were taken as xUeq(host) [x =
1.2 (aromatic) and 1.5 (methyl)].
Data collection: SMART (Bruker, 2001) for (I); MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1988) for (II). Cell refinement: SAINT (Bruker, 2002) for (I); MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1988) for (II). Data reduction: SAINT (Bruker, 2002) for (I); MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1988) for (II). For both compounds, program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003).
(I) 1,2-Dibromo-4,5-dimethoxybenzene
top
Crystal data top
C8H8Br2O2 | Z = 8 |
Mr = 295.96 | F(000) = 1136 |
Triclinic, P1 | Dx = 2.020 Mg m−3 |
Hall symbol: -P 1 | Melting point: 363(1) K |
a = 10.1172 (5) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.2052 (5) Å | Cell parameters from 6539 reflections |
c = 20.2764 (10) Å | θ = 2.5–24.7° |
α = 104.1710 (12)° | µ = 8.29 mm−1 |
β = 98.9405 (10)° | T = 294 K |
γ = 101.0630 (12)° | Blocks, colourless |
V = 1946.46 (17) Å3 | 0.16 × 0.14 × 0.14 mm |
Data collection top
Bruker SMART APEX CCD area-detector diffractometer | 8656 independent reflections |
Radiation source: fine-focus sealed tube | 5046 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
phi and ω scans | θmax = 27.9°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | h = −13→13 |
Tmin = 0.28, Tmax = 0.32 | k = −13→13 |
30774 measured reflections | l = −26→26 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.038P)2 + 0.6302P] where P = (Fo2 + 2Fc2)/3 |
8656 reflections | (Δ/σ)max = 0.001 |
441 parameters | Δρmax = 0.44 e Å−3 |
0 restraints | Δρmin = −0.46 e Å−3 |
Crystal data top
C8H8Br2O2 | γ = 101.0630 (12)° |
Mr = 295.96 | V = 1946.46 (17) Å3 |
Triclinic, P1 | Z = 8 |
a = 10.1172 (5) Å | Mo Kα radiation |
b = 10.2052 (5) Å | µ = 8.29 mm−1 |
c = 20.2764 (10) Å | T = 294 K |
α = 104.1710 (12)° | 0.16 × 0.14 × 0.14 mm |
β = 98.9405 (10)° | |
Data collection top
Bruker SMART APEX CCD area-detector diffractometer | 8656 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2002) | 5046 reflections with I > 2σ(I) |
Tmin = 0.28, Tmax = 0.32 | Rint = 0.033 |
30774 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.44 e Å−3 |
8656 reflections | Δρmin = −0.46 e Å−3 |
441 parameters | |
Special details top
Experimental. Characterization was performed by NMR (Bruker Avance300 using CDCl3 as solvent
and its residual peak as internal reference at 7.26 p.p.m.) and elemental
analysis (Carlo Erba CHNS-O EA1108 at the Servicio de Microanálisis of
Inquimae). |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Br1A | 0.18852 (5) | 0.84633 (5) | 0.56347 (2) | 0.08861 (16) | |
Br2A | −0.11747 (5) | 0.62952 (5) | 0.47438 (2) | 0.08819 (15) | |
O1A | 0.1572 (3) | 1.0684 (3) | 0.35540 (14) | 0.0836 (8) | |
O2A | −0.0780 (3) | 0.9081 (3) | 0.29058 (14) | 0.0872 (9) | |
C1A | 0.0987 (4) | 0.8591 (4) | 0.47729 (18) | 0.0612 (9) | |
C2A | 0.1624 (4) | 0.9604 (4) | 0.44997 (19) | 0.0646 (10) | |
H2A | 0.2471 | 1.0193 | 0.4743 | 0.077* | |
C3A | 0.1027 (4) | 0.9747 (4) | 0.38795 (18) | 0.0645 (10) | |
C4A | −0.0254 (4) | 0.8857 (4) | 0.35145 (18) | 0.0657 (10) | |
C5A | −0.0879 (4) | 0.7858 (4) | 0.37868 (19) | 0.0668 (10) | |
H5A | −0.1727 | 0.7269 | 0.3546 | 0.080* | |
C6A | −0.0262 (4) | 0.7716 (4) | 0.44160 (18) | 0.0618 (9) | |
C7A | 0.2883 (4) | 1.1603 (5) | 0.3899 (2) | 0.0869 (13) | |
H7AA | 0.3152 | 1.2215 | 0.3626 | 0.130* | |
H7AB | 0.3556 | 1.1069 | 0.3954 | 0.130* | |
H7AC | 0.2821 | 1.2141 | 0.4348 | 0.130* | |
C8A | −0.2073 (4) | 0.8181 (6) | 0.2512 (2) | 0.1095 (18) | |
H8AA | −0.2320 | 0.8416 | 0.2086 | 0.164* | |
H8AB | −0.2770 | 0.8292 | 0.2779 | 0.164* | |
H8AC | −0.1997 | 0.7232 | 0.2407 | 0.164* | |
Br1B | 0.51028 (5) | 0.84947 (5) | 0.39054 (2) | 0.09023 (16) | |
Br2B | 0.40577 (5) | 0.60365 (5) | 0.46979 (2) | 0.08438 (15) | |
O1B | 0.0405 (3) | 0.6253 (3) | 0.21122 (14) | 0.0760 (8) | |
O2B | −0.0379 (3) | 0.4381 (3) | 0.27175 (14) | 0.0773 (7) | |
C1B | 0.3397 (4) | 0.7172 (4) | 0.35633 (19) | 0.0602 (9) | |
C2B | 0.2559 (4) | 0.7211 (4) | 0.29605 (19) | 0.0640 (10) | |
H2B | 0.2854 | 0.7874 | 0.2738 | 0.077* | |
C3B | 0.1298 (4) | 0.6281 (4) | 0.26885 (18) | 0.0587 (9) | |
C4B | 0.0868 (4) | 0.5265 (4) | 0.30234 (19) | 0.0594 (9) | |
C5B | 0.1704 (4) | 0.5233 (4) | 0.36135 (18) | 0.0604 (9) | |
H5B | 0.1421 | 0.4564 | 0.3835 | 0.073* | |
C6B | 0.2966 (4) | 0.6177 (4) | 0.38877 (18) | 0.0599 (9) | |
C7B | 0.0833 (5) | 0.7271 (5) | 0.1756 (2) | 0.0865 (13) | |
H7BA | 0.0120 | 0.7163 | 0.1361 | 0.130* | |
H7BB | 0.1661 | 0.7138 | 0.1603 | 0.130* | |
H7BC | 0.1003 | 0.8189 | 0.2068 | 0.130* | |
C8B | −0.0872 (4) | 0.3350 (4) | 0.3047 (2) | 0.0772 (11) | |
H8BA | −0.1749 | 0.2779 | 0.2777 | 0.116* | |
H8BB | −0.0971 | 0.3800 | 0.3505 | 0.116* | |
H8BC | −0.0226 | 0.2780 | 0.3081 | 0.116* | |
Br1C | 0.15911 (5) | 0.45176 (5) | 0.02682 (2) | 0.09230 (17) | |
Br2C | 0.47373 (5) | 0.65530 (5) | 0.11271 (2) | 0.08761 (16) | |
O1C | 0.1936 (3) | 0.2113 (3) | 0.22690 (13) | 0.0698 (7) | |
O2C | 0.4349 (3) | 0.3628 (3) | 0.29126 (13) | 0.0693 (7) | |
C1C | 0.2523 (4) | 0.4309 (4) | 0.11005 (18) | 0.0610 (9) | |
C2C | 0.1871 (4) | 0.3281 (4) | 0.13655 (19) | 0.0619 (9) | |
H2C | 0.1005 | 0.2725 | 0.1129 | 0.074* | |
C3C | 0.2494 (4) | 0.3082 (4) | 0.19688 (18) | 0.0572 (9) | |
C4C | 0.3800 (4) | 0.3909 (4) | 0.23244 (17) | 0.0559 (9) | |
C5C | 0.4440 (4) | 0.4937 (4) | 0.20656 (18) | 0.0585 (9) | |
H5C | 0.5303 | 0.5502 | 0.2302 | 0.070* | |
C6C | 0.3789 (4) | 0.5125 (4) | 0.14515 (19) | 0.0595 (9) | |
C7C | 0.0615 (4) | 0.1217 (4) | 0.1909 (2) | 0.0764 (11) | |
H7CA | 0.0294 | 0.0632 | 0.2185 | 0.115* | |
H7CB | 0.0696 | 0.0648 | 0.1470 | 0.115* | |
H7CC | −0.0028 | 0.1771 | 0.1830 | 0.115* | |
C8C | 0.5725 (4) | 0.4376 (5) | 0.3258 (2) | 0.0782 (12) | |
H8CA | 0.6008 | 0.4056 | 0.3652 | 0.117* | |
H8CB | 0.5761 | 0.5352 | 0.3411 | 0.117* | |
H8CC | 0.6331 | 0.4222 | 0.2941 | 0.117* | |
Br1D | 0.13475 (5) | −0.12779 (5) | 0.02042 (2) | 0.08027 (14) | |
Br2D | 0.26373 (5) | 0.09162 (5) | −0.06800 (2) | 0.08695 (15) | |
O1D | 0.5780 (3) | 0.1239 (3) | 0.21456 (13) | 0.0792 (8) | |
O2D | 0.6751 (3) | 0.2925 (3) | 0.14934 (13) | 0.0783 (8) | |
C1D | 0.3045 (4) | 0.0067 (4) | 0.05654 (18) | 0.0573 (9) | |
C2D | 0.3764 (4) | 0.0138 (4) | 0.12185 (18) | 0.0602 (9) | |
H2D | 0.3411 | −0.0468 | 0.1459 | 0.072* | |
C3D | 0.4984 (4) | 0.1094 (4) | 0.15087 (18) | 0.0608 (9) | |
C4D | 0.5534 (4) | 0.2009 (4) | 0.11520 (18) | 0.0618 (9) | |
C5D | 0.4818 (4) | 0.1936 (4) | 0.05073 (18) | 0.0620 (9) | |
H5D | 0.5171 | 0.2538 | 0.0265 | 0.074* | |
C6D | 0.3564 (4) | 0.0962 (4) | 0.02122 (18) | 0.0596 (9) | |
C7D | 0.5192 (5) | 0.0460 (5) | 0.2567 (2) | 0.0939 (15) | |
H7DA | 0.5817 | 0.0683 | 0.3008 | 0.141* | |
H7DB | 0.5026 | −0.0517 | 0.2338 | 0.141* | |
H7DC | 0.4338 | 0.0688 | 0.2638 | 0.141* | |
C8D | 0.7344 (4) | 0.3886 (4) | 0.1158 (2) | 0.0839 (12) | |
H8DA | 0.8199 | 0.4464 | 0.1450 | 0.126* | |
H8DB | 0.6723 | 0.4457 | 0.1071 | 0.126* | |
H8DC | 0.7512 | 0.3387 | 0.0724 | 0.126* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Br1A | 0.0960 (3) | 0.0955 (3) | 0.0719 (3) | 0.0127 (3) | −0.0071 (2) | 0.0427 (2) |
Br2A | 0.1043 (4) | 0.0785 (3) | 0.0778 (3) | −0.0019 (3) | 0.0137 (3) | 0.0368 (2) |
O1A | 0.0754 (19) | 0.102 (2) | 0.0684 (17) | −0.0081 (16) | 0.0056 (14) | 0.0438 (16) |
O2A | 0.0713 (18) | 0.124 (2) | 0.0612 (16) | −0.0050 (17) | −0.0042 (14) | 0.0500 (16) |
C1A | 0.070 (3) | 0.070 (2) | 0.0483 (19) | 0.024 (2) | 0.0111 (18) | 0.0212 (18) |
C2A | 0.059 (2) | 0.073 (3) | 0.057 (2) | 0.0090 (19) | 0.0055 (18) | 0.0204 (19) |
C3A | 0.065 (2) | 0.075 (3) | 0.053 (2) | 0.006 (2) | 0.0108 (18) | 0.0265 (19) |
C4A | 0.064 (2) | 0.084 (3) | 0.050 (2) | 0.009 (2) | 0.0092 (18) | 0.0277 (19) |
C5A | 0.060 (2) | 0.078 (3) | 0.057 (2) | 0.005 (2) | 0.0086 (18) | 0.020 (2) |
C6A | 0.071 (3) | 0.060 (2) | 0.057 (2) | 0.013 (2) | 0.0166 (19) | 0.0212 (18) |
C7A | 0.075 (3) | 0.094 (3) | 0.086 (3) | −0.004 (2) | 0.011 (2) | 0.039 (3) |
C8A | 0.072 (3) | 0.169 (5) | 0.075 (3) | −0.013 (3) | −0.009 (2) | 0.058 (3) |
Br1B | 0.0765 (3) | 0.0857 (3) | 0.0943 (3) | −0.0094 (2) | −0.0129 (2) | 0.0412 (3) |
Br2B | 0.0791 (3) | 0.1052 (3) | 0.0695 (3) | 0.0147 (3) | −0.0057 (2) | 0.0450 (2) |
O1B | 0.0723 (18) | 0.0818 (18) | 0.0744 (17) | 0.0076 (14) | −0.0081 (14) | 0.0466 (15) |
O2B | 0.0623 (17) | 0.0847 (19) | 0.0833 (18) | 0.0007 (15) | −0.0009 (14) | 0.0444 (15) |
C1B | 0.055 (2) | 0.059 (2) | 0.062 (2) | 0.0094 (18) | 0.0004 (17) | 0.0202 (18) |
C2B | 0.070 (3) | 0.063 (2) | 0.064 (2) | 0.015 (2) | 0.0088 (19) | 0.0334 (19) |
C3B | 0.058 (2) | 0.064 (2) | 0.059 (2) | 0.0192 (19) | 0.0036 (18) | 0.0277 (18) |
C4B | 0.054 (2) | 0.066 (2) | 0.062 (2) | 0.0144 (19) | 0.0083 (18) | 0.0278 (19) |
C5B | 0.057 (2) | 0.069 (2) | 0.062 (2) | 0.0150 (19) | 0.0074 (18) | 0.0345 (19) |
C6B | 0.062 (2) | 0.069 (2) | 0.054 (2) | 0.022 (2) | 0.0048 (17) | 0.0260 (18) |
C7B | 0.091 (3) | 0.098 (3) | 0.078 (3) | 0.017 (3) | 0.001 (2) | 0.055 (3) |
C8B | 0.068 (3) | 0.083 (3) | 0.086 (3) | 0.005 (2) | 0.018 (2) | 0.043 (2) |
Br1C | 0.1027 (4) | 0.0917 (3) | 0.0714 (3) | 0.0022 (3) | −0.0193 (2) | 0.0430 (2) |
Br2C | 0.0905 (3) | 0.0816 (3) | 0.0888 (3) | −0.0050 (2) | 0.0015 (2) | 0.0514 (2) |
O1C | 0.0701 (17) | 0.0681 (16) | 0.0683 (16) | −0.0005 (14) | 0.0031 (13) | 0.0344 (13) |
O2C | 0.0641 (17) | 0.0800 (18) | 0.0633 (15) | 0.0076 (14) | −0.0029 (13) | 0.0368 (13) |
C1C | 0.067 (2) | 0.058 (2) | 0.057 (2) | 0.0122 (19) | 0.0017 (18) | 0.0249 (18) |
C2C | 0.058 (2) | 0.058 (2) | 0.062 (2) | 0.0034 (18) | −0.0028 (18) | 0.0213 (18) |
C3C | 0.061 (2) | 0.053 (2) | 0.057 (2) | 0.0108 (18) | 0.0065 (18) | 0.0224 (17) |
C4C | 0.060 (2) | 0.055 (2) | 0.053 (2) | 0.0146 (18) | 0.0037 (17) | 0.0204 (17) |
C5C | 0.055 (2) | 0.053 (2) | 0.064 (2) | 0.0069 (17) | 0.0008 (17) | 0.0212 (17) |
C6C | 0.064 (2) | 0.054 (2) | 0.063 (2) | 0.0103 (18) | 0.0079 (19) | 0.0270 (17) |
C7C | 0.076 (3) | 0.061 (2) | 0.085 (3) | −0.004 (2) | 0.015 (2) | 0.025 (2) |
C8C | 0.064 (3) | 0.096 (3) | 0.069 (2) | 0.009 (2) | −0.010 (2) | 0.035 (2) |
Br1D | 0.0746 (3) | 0.0780 (3) | 0.0734 (3) | −0.0069 (2) | 0.0003 (2) | 0.0236 (2) |
Br2D | 0.0798 (3) | 0.1106 (4) | 0.0657 (3) | 0.0040 (3) | −0.0051 (2) | 0.0437 (2) |
O1D | 0.086 (2) | 0.0850 (19) | 0.0561 (15) | −0.0008 (15) | −0.0084 (14) | 0.0320 (14) |
O2D | 0.0746 (18) | 0.0818 (18) | 0.0661 (16) | −0.0087 (15) | −0.0006 (14) | 0.0292 (14) |
C1D | 0.059 (2) | 0.053 (2) | 0.057 (2) | 0.0097 (17) | 0.0081 (17) | 0.0160 (17) |
C2D | 0.067 (2) | 0.053 (2) | 0.060 (2) | 0.0079 (19) | 0.0086 (18) | 0.0238 (17) |
C3D | 0.070 (3) | 0.060 (2) | 0.053 (2) | 0.015 (2) | 0.0076 (18) | 0.0212 (18) |
C4D | 0.063 (2) | 0.063 (2) | 0.055 (2) | 0.0074 (19) | 0.0063 (18) | 0.0189 (18) |
C5D | 0.065 (2) | 0.065 (2) | 0.059 (2) | 0.0070 (19) | 0.0103 (18) | 0.0311 (18) |
C6D | 0.061 (2) | 0.064 (2) | 0.054 (2) | 0.0149 (19) | 0.0061 (18) | 0.0210 (18) |
C7D | 0.121 (4) | 0.093 (3) | 0.060 (2) | 0.000 (3) | −0.005 (2) | 0.043 (2) |
C8D | 0.074 (3) | 0.083 (3) | 0.088 (3) | −0.004 (2) | 0.008 (2) | 0.035 (2) |
Geometric parameters (Å, º) top
Br1A—C1A | 1.887 (3) | Br1C—C1C | 1.881 (3) |
Br2A—C6A | 1.883 (4) | Br2C—C6C | 1.899 (4) |
O1A—C3A | 1.369 (4) | O1C—C3C | 1.361 (4) |
O1A—C7A | 1.429 (5) | O1C—C7C | 1.434 (4) |
O2A—C4A | 1.356 (4) | O2C—C4C | 1.355 (4) |
O2A—C8A | 1.431 (5) | O2C—C8C | 1.428 (4) |
C1A—C6A | 1.373 (5) | C1C—C6C | 1.363 (5) |
C1A—C2A | 1.388 (5) | C1C—C2C | 1.395 (5) |
C2A—C3A | 1.362 (5) | C2C—C3C | 1.366 (5) |
C2A—H2A | 0.9300 | C2C—H2C | 0.9300 |
C3A—C4A | 1.405 (5) | C3C—C4C | 1.398 (5) |
C4A—C5A | 1.371 (5) | C4C—C5C | 1.383 (5) |
C5A—C6A | 1.384 (5) | C5C—C6C | 1.389 (5) |
C5A—H5A | 0.9300 | C5C—H5C | 0.9300 |
C7A—H7AA | 0.9600 | C7C—H7CA | 0.9600 |
C7A—H7AB | 0.9600 | C7C—H7CB | 0.9600 |
C7A—H7AC | 0.9600 | C7C—H7CC | 0.9600 |
C8A—H8AA | 0.9600 | C8C—H8CA | 0.9600 |
C8A—H8AB | 0.9600 | C8C—H8CB | 0.9600 |
C8A—H8AC | 0.9600 | C8C—H8CC | 0.9600 |
Br1B—C1B | 1.886 (4) | Br1D—C1D | 1.893 (4) |
Br2B—C6B | 1.885 (3) | Br2D—C6D | 1.889 (3) |
O1B—C3B | 1.352 (4) | O1D—C3D | 1.369 (4) |
O1B—C7B | 1.442 (5) | O1D—C7D | 1.423 (5) |
O2B—C4B | 1.355 (4) | O2D—C4D | 1.358 (4) |
O2B—C8B | 1.431 (4) | O2D—C8D | 1.420 (5) |
C1B—C6B | 1.379 (5) | C1D—C6D | 1.370 (5) |
C1B—C2B | 1.389 (5) | C1D—C2D | 1.386 (5) |
C2B—C3B | 1.376 (5) | C2D—C3D | 1.362 (5) |
C2B—H2B | 0.9300 | C2D—H2D | 0.9300 |
C3B—C4B | 1.410 (5) | C3D—C4D | 1.401 (5) |
C4B—C5B | 1.365 (5) | C4D—C5D | 1.369 (5) |
C5B—C6B | 1.383 (5) | C5D—C6D | 1.394 (5) |
C5B—H5B | 0.9300 | C5D—H5D | 0.9300 |
C7B—H7BA | 0.9600 | C7D—H7DA | 0.9600 |
C7B—H7BB | 0.9600 | C7D—H7DB | 0.9600 |
C7B—H7BC | 0.9600 | C7D—H7DC | 0.9600 |
C8B—H8BA | 0.9600 | C8D—H8DA | 0.9600 |
C8B—H8BB | 0.9600 | C8D—H8DB | 0.9600 |
C8B—H8BC | 0.9600 | C8D—H8DC | 0.9600 |
| | | |
C3A—O1A—C7A | 117.0 (3) | C3C—O1C—C7C | 116.9 (3) |
C4A—O2A—C8A | 117.1 (3) | C4C—O2C—C8C | 117.4 (3) |
C6A—C1A—C2A | 119.9 (3) | C6C—C1C—C2C | 119.4 (3) |
C6A—C1A—Br1A | 121.9 (3) | C6C—C1C—Br1C | 122.7 (3) |
C2A—C1A—Br1A | 118.2 (3) | C2C—C1C—Br1C | 117.9 (3) |
C3A—C2A—C1A | 120.9 (4) | C3C—C2C—C1C | 120.6 (3) |
C3A—C2A—H2A | 119.5 | C3C—C2C—H2C | 119.7 |
C1A—C2A—H2A | 119.5 | C1C—C2C—H2C | 119.7 |
C2A—C3A—O1A | 126.0 (4) | O1C—C3C—C2C | 124.8 (3) |
C2A—C3A—C4A | 119.3 (4) | O1C—C3C—C4C | 115.2 (3) |
O1A—C3A—C4A | 114.7 (3) | C2C—C3C—C4C | 120.0 (3) |
O2A—C4A—C5A | 125.1 (4) | O2C—C4C—C5C | 124.5 (3) |
O2A—C4A—C3A | 115.4 (3) | O2C—C4C—C3C | 116.0 (3) |
C5A—C4A—C3A | 119.5 (3) | C5C—C4C—C3C | 119.5 (3) |
C4A—C5A—C6A | 120.8 (4) | C4C—C5C—C6C | 119.7 (3) |
C4A—C5A—H5A | 119.6 | C4C—C5C—H5C | 120.1 |
C6A—C5A—H5A | 119.6 | C6C—C5C—H5C | 120.1 |
C1A—C6A—C5A | 119.5 (4) | C1C—C6C—C5C | 120.9 (3) |
C1A—C6A—Br2A | 122.4 (3) | C1C—C6C—Br2C | 121.9 (3) |
C5A—C6A—Br2A | 118.1 (3) | C5C—C6C—Br2C | 117.3 (3) |
O1A—C7A—H7AA | 109.5 | O1C—C7C—H7CA | 109.5 |
O1A—C7A—H7AB | 109.5 | O1C—C7C—H7CB | 109.5 |
H7AA—C7A—H7AB | 109.5 | H7CA—C7C—H7CB | 109.5 |
O1A—C7A—H7AC | 109.5 | O1C—C7C—H7CC | 109.5 |
H7AA—C7A—H7AC | 109.5 | H7CA—C7C—H7CC | 109.5 |
H7AB—C7A—H7AC | 109.5 | H7CB—C7C—H7CC | 109.5 |
O2A—C8A—H8AA | 109.5 | O2C—C8C—H8CA | 109.5 |
O2A—C8A—H8AB | 109.5 | O2C—C8C—H8CB | 109.5 |
H8AA—C8A—H8AB | 109.5 | H8CA—C8C—H8CB | 109.5 |
O2A—C8A—H8AC | 109.5 | O2C—C8C—H8CC | 109.5 |
H8AA—C8A—H8AC | 109.5 | H8CA—C8C—H8CC | 109.5 |
H8AB—C8A—H8AC | 109.5 | H8CB—C8C—H8CC | 109.5 |
C3B—O1B—C7B | 116.7 (3) | C3D—O1D—C7D | 116.8 (3) |
C4B—O2B—C8B | 117.4 (3) | C4D—O2D—C8D | 117.8 (3) |
C6B—C1B—C2B | 119.5 (3) | C6D—C1D—C2D | 119.9 (3) |
C6B—C1B—Br1B | 122.4 (3) | C6D—C1D—Br1D | 122.7 (3) |
C2B—C1B—Br1B | 118.1 (3) | C2D—C1D—Br1D | 117.4 (3) |
C3B—C2B—C1B | 120.9 (3) | C3D—C2D—C1D | 120.1 (3) |
C3B—C2B—H2B | 119.6 | C3D—C2D—H2D | 119.9 |
C1B—C2B—H2B | 119.6 | C1D—C2D—H2D | 119.9 |
O1B—C3B—C2B | 125.0 (3) | C2D—C3D—O1D | 124.7 (3) |
O1B—C3B—C4B | 115.8 (3) | C2D—C3D—C4D | 120.7 (3) |
C2B—C3B—C4B | 119.2 (3) | O1D—C3D—C4D | 114.6 (3) |
O2B—C4B—C5B | 125.2 (3) | O2D—C4D—C5D | 125.5 (4) |
O2B—C4B—C3B | 115.4 (3) | O2D—C4D—C3D | 115.6 (3) |
C5B—C4B—C3B | 119.4 (3) | C5D—C4D—C3D | 118.9 (3) |
C4B—C5B—C6B | 121.1 (3) | C4D—C5D—C6D | 120.4 (3) |
C4B—C5B—H5B | 119.4 | C4D—C5D—H5D | 119.8 |
C6B—C5B—H5B | 119.4 | C6D—C5D—H5D | 119.8 |
C1B—C6B—C5B | 119.9 (3) | C1D—C6D—C5D | 120.0 (3) |
C1B—C6B—Br2B | 122.0 (3) | C1D—C6D—Br2D | 121.9 (3) |
C5B—C6B—Br2B | 118.1 (3) | C5D—C6D—Br2D | 118.0 (3) |
O1B—C7B—H7BA | 109.5 | O1D—C7D—H7DA | 109.5 |
O1B—C7B—H7BB | 109.5 | O1D—C7D—H7DB | 109.5 |
H7BA—C7B—H7BB | 109.5 | H7DA—C7D—H7DB | 109.5 |
O1B—C7B—H7BC | 109.5 | O1D—C7D—H7DC | 109.5 |
H7BA—C7B—H7BC | 109.5 | H7DA—C7D—H7DC | 109.5 |
H7BB—C7B—H7BC | 109.5 | H7DB—C7D—H7DC | 109.5 |
O2B—C8B—H8BA | 109.5 | O2D—C8D—H8DA | 109.5 |
O2B—C8B—H8BB | 109.5 | O2D—C8D—H8DB | 109.5 |
H8BA—C8B—H8BB | 109.5 | H8DA—C8D—H8DB | 109.5 |
O2B—C8B—H8BC | 109.5 | O2D—C8D—H8DC | 109.5 |
H8BA—C8B—H8BC | 109.5 | H8DA—C8D—H8DC | 109.5 |
H8BB—C8B—H8BC | 109.5 | H8DB—C8D—H8DC | 109.5 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C7A—H7AA···O2Ci | 0.96 | 2.56 | 3.498 (5) | 167 |
C8D—H8DA···O1Bii | 0.96 | 2.53 | 3.485 (5) | 171 |
Symmetry codes: (i) x, y+1, z; (ii) x+1, y, z. |
(II) 1,2-Diiodo-4,5-dimethoxybenzene
top
Crystal data top
C8H8I2O2 | Dx = 2.514 Mg m−3 |
Mr = 389.94 | Melting point: 404(1) K |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 25 reflections |
a = 8.993 (4) Å | θ = 7.5–17.5° |
b = 13.882 (9) Å | µ = 6.07 mm−1 |
c = 16.506 (4) Å | T = 294 K |
V = 2060.7 (17) Å3 | Blocks, colourless |
Z = 8 | 0.32 × 0.26 × 0.16 mm |
F(000) = 1424 | |
Data collection top
Rigaku AFC6 difractometer diffractometer | 1441 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.039 |
Graphite monochromator | θmax = 26.0°, θmin = 2.5° |
ω/2θ scans | h = −1→11 |
Absorption correction: ψ scan (North et al., 1968) | k = −1→17 |
Tmin = 0.18, Tmax = 0.38 | l = −1→20 |
2652 measured reflections | 3 standard reflections every 150 reflections |
2023 independent reflections | intensity decay: <2% |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.042 | H-atom parameters constrained |
wR(F2) = 0.108 | w = 1/[σ2(Fo2) + (0.0345P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.41 | (Δ/σ)max = 0.001 |
2023 reflections | Δρmax = 0.82 e Å−3 |
112 parameters | Δρmin = −0.76 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0159 (6) |
Crystal data top
C8H8I2O2 | V = 2060.7 (17) Å3 |
Mr = 389.94 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 8.993 (4) Å | µ = 6.07 mm−1 |
b = 13.882 (9) Å | T = 294 K |
c = 16.506 (4) Å | 0.32 × 0.26 × 0.16 mm |
Data collection top
Rigaku AFC6 difractometer diffractometer | 1441 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.039 |
Tmin = 0.18, Tmax = 0.38 | 3 standard reflections every 150 reflections |
2652 measured reflections | intensity decay: <2% |
2023 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 1.41 | Δρmax = 0.82 e Å−3 |
2023 reflections | Δρmin = −0.76 e Å−3 |
112 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
I1 | 0.08039 (8) | 0.74558 (4) | 0.55011 (4) | 0.0553 (3) | |
I2 | 0.31872 (6) | 0.53741 (4) | 0.59939 (3) | 0.0433 (2) | |
O1 | −0.0021 (6) | 0.5609 (4) | 0.2648 (3) | 0.0420 (13) | |
O2 | 0.1706 (6) | 0.4178 (4) | 0.2970 (3) | 0.0437 (13) | |
C1 | 0.1135 (8) | 0.6290 (5) | 0.4722 (4) | 0.0305 (16) | |
C2 | 0.0389 (8) | 0.6337 (5) | 0.3974 (4) | 0.0343 (16) | |
H2 | −0.0246 | 0.6849 | 0.3862 | 0.041* | |
C3 | 0.0605 (7) | 0.5616 (6) | 0.3403 (4) | 0.0334 (16) | |
C4 | 0.1547 (8) | 0.4835 (5) | 0.3572 (4) | 0.0305 (16) | |
C5 | 0.2286 (8) | 0.4803 (5) | 0.4318 (4) | 0.0334 (17) | |
H5 | 0.2928 | 0.4295 | 0.4431 | 0.040* | |
C6 | 0.2070 (8) | 0.5521 (6) | 0.4891 (4) | 0.0342 (17) | |
C7 | −0.0979 (9) | 0.6405 (6) | 0.2433 (5) | 0.049 (2) | |
H7A | −0.1316 | 0.6326 | 0.1885 | 0.074* | |
H7B | −0.0436 | 0.6998 | 0.2479 | 0.074* | |
H7C | −0.1819 | 0.6419 | 0.2791 | 0.074* | |
C8 | 0.2883 (10) | 0.3511 (6) | 0.3043 (5) | 0.049 (2) | |
H8A | 0.2903 | 0.3101 | 0.2575 | 0.073* | |
H8B | 0.2738 | 0.3126 | 0.3520 | 0.073* | |
H8C | 0.3809 | 0.3851 | 0.3085 | 0.073* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
I1 | 0.0778 (5) | 0.0460 (4) | 0.0419 (4) | 0.0067 (3) | 0.0007 (3) | −0.0115 (3) |
I2 | 0.0490 (4) | 0.0532 (4) | 0.0277 (3) | −0.0079 (3) | −0.0105 (2) | 0.0019 (2) |
O1 | 0.044 (3) | 0.053 (3) | 0.028 (2) | 0.004 (3) | −0.008 (2) | 0.004 (2) |
O2 | 0.052 (3) | 0.050 (3) | 0.029 (3) | 0.008 (3) | −0.006 (2) | −0.012 (3) |
C1 | 0.030 (4) | 0.030 (3) | 0.032 (4) | −0.007 (3) | 0.001 (3) | 0.001 (3) |
C2 | 0.033 (4) | 0.036 (4) | 0.033 (4) | 0.005 (3) | 0.003 (3) | −0.001 (3) |
C3 | 0.027 (3) | 0.051 (4) | 0.022 (3) | −0.008 (3) | 0.004 (3) | 0.007 (3) |
C4 | 0.035 (4) | 0.032 (4) | 0.025 (3) | −0.002 (3) | 0.002 (3) | 0.004 (3) |
C5 | 0.037 (4) | 0.038 (4) | 0.025 (4) | 0.003 (3) | −0.004 (3) | −0.002 (3) |
C6 | 0.039 (4) | 0.044 (4) | 0.020 (3) | −0.009 (3) | 0.003 (3) | 0.003 (3) |
C7 | 0.046 (5) | 0.055 (5) | 0.047 (5) | −0.011 (4) | −0.011 (4) | 0.016 (4) |
C8 | 0.058 (5) | 0.046 (5) | 0.043 (4) | 0.014 (4) | −0.001 (4) | −0.010 (4) |
Geometric parameters (Å, º) top
I1—C1 | 2.089 (7) | C3—C4 | 1.404 (10) |
I2—C6 | 2.090 (7) | C4—C5 | 1.401 (10) |
O1—C3 | 1.366 (8) | C5—C6 | 1.387 (11) |
O1—C7 | 1.446 (10) | C5—H5 | 0.9300 |
O2—C4 | 1.356 (9) | C7—H7A | 0.9600 |
O2—C8 | 1.412 (9) | C7—H7B | 0.9600 |
C1—C6 | 1.387 (10) | C7—H7C | 0.9600 |
C1—C2 | 1.408 (10) | C8—H8A | 0.9600 |
C2—C3 | 1.389 (10) | C8—H8B | 0.9600 |
C2—H2 | 0.9300 | C8—H8C | 0.9600 |
| | | |
C3—O1—C7 | 117.7 (6) | C4—C5—H5 | 119.7 |
C4—O2—C8 | 117.2 (6) | C1—C6—C5 | 120.1 (7) |
C6—C1—C2 | 120.1 (6) | C1—C6—I2 | 122.7 (5) |
C6—C1—I1 | 124.0 (5) | C5—C6—I2 | 117.1 (5) |
C2—C1—I1 | 115.8 (5) | O1—C7—H7A | 109.5 |
C3—C2—C1 | 119.7 (6) | O1—C7—H7B | 109.5 |
C3—C2—H2 | 120.2 | H7A—C7—H7B | 109.5 |
C1—C2—H2 | 120.2 | O1—C7—H7C | 109.5 |
O1—C3—C2 | 124.5 (7) | H7A—C7—H7C | 109.5 |
O1—C3—C4 | 115.1 (6) | H7B—C7—H7C | 109.5 |
C2—C3—C4 | 120.4 (6) | O2—C8—H8A | 109.5 |
O2—C4—C5 | 124.9 (6) | O2—C8—H8B | 109.5 |
O2—C4—C3 | 115.9 (6) | H8A—C8—H8B | 109.5 |
C5—C4—C3 | 119.1 (6) | O2—C8—H8C | 109.5 |
C6—C5—C4 | 120.6 (7) | H8A—C8—H8C | 109.5 |
C6—C5—H5 | 119.7 | H8B—C8—H8C | 109.5 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H7A···Cg1i | 0.96 | 2.90 | 3.747 (8) | 147 |
Symmetry code: (i) x−1/2, y, −z+1/2. |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | C8H8Br2O2 | C8H8I2O2 |
Mr | 295.96 | 389.94 |
Crystal system, space group | Triclinic, P1 | Orthorhombic, Pbca |
Temperature (K) | 294 | 294 |
a, b, c (Å) | 10.1172 (5), 10.2052 (5), 20.2764 (10) | 8.993 (4), 13.882 (9), 16.506 (4) |
α, β, γ (°) | 104.1710 (12), 98.9405 (10), 101.0630 (12) | 90, 90, 90 |
V (Å3) | 1946.46 (17) | 2060.7 (17) |
Z | 8 | 8 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 8.29 | 6.07 |
Crystal size (mm) | 0.16 × 0.14 × 0.14 | 0.32 × 0.26 × 0.16 |
|
Data collection |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer | Rigaku AFC6 difractometer diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2002) | ψ scan (North et al., 1968) |
Tmin, Tmax | 0.28, 0.32 | 0.18, 0.38 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 30774, 8656, 5046 | 2652, 2023, 1441 |
Rint | 0.033 | 0.039 |
(sin θ/λ)max (Å−1) | 0.659 | 0.617 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.097, 1.02 | 0.042, 0.108, 1.41 |
No. of reflections | 8656 | 2023 |
No. of parameters | 441 | 112 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.44, −0.46 | 0.82, −0.76 |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
C7A—H7AA···O2Ci | 0.96 | 2.56 | 3.498 (5) | 167.2 |
C8D—H8DA···O1Bii | 0.96 | 2.53 | 3.485 (5) | 171.0 |
Symmetry codes: (i) x, y+1, z; (ii) x+1, y, z. |
Table 1. π-π interactions (Å, °) for (I) topGroup 1/Group 2 | ccd(Å) | sa(°) | ipd(Å) |
Cg1/Cg1i | 4.061 (2) | 25.(1) | 3.66 (1) |
Cg1/Cg2 | 3.639 (2) | 4.(2) | 3.62 (2) |
Cg2/Cg3 | 3.802 (2) | 21.(1) | 3.55 (4) |
Cg3/Cg4 | 3.670 (2) | 13.(1) | 3.58 (1) |
Cg4/Cg4ii | 4.227 (2) | 28.(1) | 3.71 (1) |
Symmetry codes: (i) -x,-y+2,-z+1; (ii) -x+1,-y,-z.
Cg1: C1A–C6A; Cg2: C1B–C6B; Cg3: C1C–C6C; Cg4: C1D–C6D.
ccd: center-to-center distance (distance between ring centroids);
sa: mean slippage angle (angle subtended by the intercentroid vector
to the plane normal);
ipd: mean interplanar distance (distance from one plane to the
neighbouring centroid) [for details, see Janiak (2000)]. |
Table 2. C-Br···Br-C interactions (Å, °) for (I) topC'-X'···X"-C" | C'-X' | C"-X" | X'···X" | θ1 | θ2 |
C1A-Br1A···(Br1B-C1B)i | 1.887 (3) | 1.886 (4) | 3.7231 (7) | 100.44 (13) | 167.87 (11) |
C6B-Br2B···(Br2A-C6A)ii | 1.885 (4) | 1.883 (4) | 3.8901 (6) | 97.45 (12) | 160.75 (12) |
C1C-Br1C···(Br1D-C1D)iii | 1.881 (4) | 1.893 (4) | 3.8051 (6) | 98.06 (12) | 165.23 (11) |
C6D-Br2D···(Br2C-C6C)iv | 1.889 (4) | 1.899 (4) | 3.7161 (6) | 100.38 (12) | 165.64 (11) |
| | | | | |
C6B-Br2B···(Br2B-C6B)v | 1.885 (4) | 1.885 (4) | 3.4210 (9) | 142.59 (11) | 142.59 (11) |
C1C-Br1C···(Br1C-C1C)vi | 1.881 (4) | 1.881 (4) | 3.6291 (10) | 135.24 (12) | 135.24 (12) |
Symmetry codes: (i) -x+1, -y+2, -z+1; (ii) -x, -y+1, -z+1; (iii) -x, -y, -z;
(iv) -x+1, -y+1, -z; (v) -x+1, -y+1, -z+1; (vi) -x, -y+1, -z.
θ1: C'-X'···X", the smallest of the two XB angles;
θ2: X'···X"-C", the largest of the two XB angles;
expected values: θ1 ~ 90° and θ2 ~ 180°
(for I2 interactions), or θ1 ~ θ2 (for I1 interactions)
[for details, see Desiraju & Parthasarathy (1989)]. |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H7A···Cg1i | 0.96 | 2.90 | 3.747 (8) | 147.2 |
Symmetry code: (i) x−1/2, y, −z+1/2. |
Table 6. π–π interactions (Å, °) for (II) topGroup 1/Group 2 | ccd(Å) | ipd(Å) | sa(°) |
Cg1/Cg1iv | 4.036 (4) | 3.75 (1) | 22.(1) |
Symmetry code: (iv) -x,-y+1,-z+1.
Cg1: C1–C6;
ccd: center-to-center distance (distance
between ring centroids); sa: mean slippage angle (angle subtended by
the intercentroid vector to the plane normal); ipd: mean interplanar distance
(distance from one plane to the neighbouring centroid)
[for details, see Janiak (2000)]. |
Table 5. C-I···I-C interactions (Å, °) for (II) topC'-X'···X"-C" | C'-X' | C"-X" | X'···X" | θ1 | θ2 |
C6-I2···(I1-C1)ii | 2.090 (7) | 2.089 (7) | 4.231 (3) | 91.7 (2) | 146.1 (2) |
Symmetry codes: (i) -x+1/2, -y+1, z+1/2, (ii) -x+1/2, y-1/2, z.
θ1: C1-X1···X2, the smallest of the two XB angles;
θ2: X1···X2-C2, the largest of the two XB angles;
expected values: θ1 ~ 90° and θ2 ~ 180°,
or θ1 ~θ2 .
[for details, see Desiraju & Parthasarathy (1989)]. |
Table 4. C–I···O interactions (Å, °) for (II) topC-X···O | C-X | X···O | C-X···O |
C6—I2···O1i | 2.090 (7) | 3.470 (5) | 162.3 (2) |
C6—I2···O2i | 2.090 (7) | 3.321 (5) | 148.3 (2) |
Symmetry codes: (i) -x+1/2, -y+1, z+1/2
[for details, see Desiraju & Parthasarathy (1989)]. |
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For many years, interest in the study of noncovalent interactions has been monopolized almost entirely by hydrogen bonding and, more recently, π–π and C—H···π interactions. The driving force for this interest was (and still is) the fundamental role these interactions play in molecular recognition, a chemical process basic to life itself but nowadays also closely related to many frontier technology enterprises. In the past few years, however, a different (though closely related) type of noncovalent interactions has begun to attract the scientist's attention, the so called `halogen bond', where the main actor is a highly polarized halogen species. Under this wide umbrella, however, shelter a large variety of interactions of different aspects and behaviours; since only some of these will be used in the present work we will briefly introduce them here, directing the interested reader to more specific and qualified literature (e.g. Metrangolo et al., 2007).
In particular, we shall deal with interactions of the C—X···O/N and C—X···X—C type (where X is a halogen). The main aspects of the former type are quite in tune with the conventional hydrogen bond, and accordingly its most conspicuous geometrical characteristics are (a) a rather large C—X···O/N angle (> 150°) and (b) an X···O distance shorter than the sum of the van der Waals radii. The second type is rather more complex from a descriptive point of view, but the main aspects could be summarized as follows: If we denote the larger of the two C—X···X angles as θ1, and the smaller as θ2, then two types of C—X···X—C interactions can be envisaged (Desiraju & Parthasarathy, 1989): the (so-called) I1 interactions, which have θ1 = θ2, and the I2 interactions, which have θ1 ≈ 180 ° and θ2 ≈ 90 °. In both cases, the X···X distance is shorter than the sum of the van der Waals radii.
The structures reported herein correspond to some of the simplest systems where this type of interaction can take place: a couple of dihalogenated aryl derivatives, namely 1,2-dibromo-4,5-dimethoxybenzene, C8H8Br2O2, (I) (or dibromo veratrole), and 1,2-diiodo-4,5-dimethoxybenzene, C8H8I2O2, (II) (or diiodo veratrole). Diiodo veratrole is a versatile starting point in many chemical reactions, including the synthesis of electron-rich phtalocyanines, conductive polymers (Bhongale et al., 2006) and cathecol-based ligands (Kinder & Youngs, 1996). It belongs to the same family of diiodobenzene, but the methoxy substituents makes this compound more electron-rich, thus rendering it more reactive towards electrophiles. The crystal structures of these closely related compounds are governed by a variety of nonbonding interactions, but the leading organizing forces are the above-mentioned `halogen bonds', which differences we will discuss in detail.
The asymmetric unit of (I) is composed of four identical, though non-equivalent, C8H8Br2O2 molecules (A–D, Fig. 1), disposed one on top of the other in an almost perfect 41 arrangement, with a relative rotation of ~π/2 and a graphitic translation shift (range \sim 3.64–3.80 Å; Table 1) when going from one to the next. This almost perfect columnar disposition is maintained by the fact that the array is continued via two inversion operations with their centres in the column axis, at (0, 1, 1/2) and (1/2, 0, 0) (marked as x and y in Fig. 2).
This preserves the alignment along the [121] columnar direction of the π-bonded chain, while disrupting the pseudo 41 piling sequence, turning it into a ···ABCD–DCBA–ABCD··· array (Fig. 2) with D–D and A–A related by inversion operations, and at a slightly longer than typical center-to-center distance [4.061 (1) and 4.227 (1) Å, respectively; Table 1]. The columnar alignment seems to be the consequence of both π–π and dipolar C—O—C interactions: the dipole of the C3/O1/C7 ether group is almost aligned with that of the C4/O2/C8 group of the adjacent molecule, but with opposite sense (see Fig. 1).
Besides these π–π interactions connecting aromatic rings in a columnar-like array, the structure presents some other nonbonding interactions at nearly right angles to the column direction, of which the most important are the C—Br···Br—C (type I2) halogen-bond contacts linking molecules with their nearest neighbours. The most relevant of these contacts (d < 3.9 Å) are shown in Fig. 1 and Table 2, all of them fulfilling the above-mentioned conditions for an I2 interaction (first four entries) and for an I1 interaction (last two entries). There are in addition a couple of nonconventional C—H···O bonds, presented in Table 3. All these interactions link neighbouring chains together into a densely connected three-dimensional structure (Fig. 3).
At a molecular level, (II) (Fig. 4) is almost identical to its Br analogue (I).
The main interactions in the structure are mediated by the halogen atoms, and in this respect the situation is highly asymmetric, atom I2 being much more active than I1. The strongest interaction is the head-to-tail link in which I2 makes a bifurcated contact with atoms O1 and O2 in a neighbouring molecule (Table 4 and Fig. 4), thus defining a wavy chain running along the b-axis direction. These chains, in turn, are linked by a halogen–halogen contact (Table 5), into an, also wavy, two-dimensional structure parallel to (100). Both interactions are illustrated as broken lines in Fig. 4, where the two-dimensional array is shown; Fig. 5, in turn, exemplifies though a side view of the latter the wavy nature of the chain juxtaposition. Piling of these two-dimensional elements promotes a couple of π interactions of different type, viz. a π–π contact (Table 6) and a C—H···π hydrogen bond (Table 7), which link the two-dimensional structures into a three-dimensional one.
Thus, we have described two compounds that present almost indistinguishable molecular structures but which, in spite of the molecular similarities, give rise to absolutely different packing arrangements, and this seems to be a result of the different strengths of the C—X···O and C—X···X—C interactions as a result of the change in the corresponding halogen species involved. In this respect, the C—Br···Br—C interaction appears to be much more feasible than C—Br···O [not a single example of the latter interaction is present in (I)]; conversely, the main synthon in (II), which leads to the formation of the chains, is constructed out of the C—I···O link, the C—I···I—C interaction appearing as second order and serving as an interchain linkage.
It is to be expected that these types of interactions will become more fully recognized and their incidence in crystal architectures will be analyzed in more detail, so that better and more efficient ab initio molecular designs can be achieved through their statistical rationalization.